Query psy10939
Match_columns 101
No_of_seqs 103 out of 173
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 22:21:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2418|consensus 100.0 2.7E-31 5.9E-36 222.2 3.8 78 21-98 288-374 (448)
2 KOG2418|consensus 100.0 3.4E-30 7.5E-35 215.6 3.9 85 14-98 313-404 (448)
3 PF00418 Tubulin-binding: Tau 99.6 1.1E-16 2.3E-21 93.7 1.6 29 14-42 1-30 (31)
4 PF00418 Tubulin-binding: Tau 99.5 1.7E-15 3.7E-20 88.6 1.7 28 43-70 3-31 (31)
5 TIGR00307 S8e ribosomal protei 14.8 95 0.0021 23.0 1.2 50 34-83 7-64 (127)
6 PF07830 PP2C_C: Protein serin 14.0 52 0.0011 22.5 -0.3 26 21-47 45-72 (81)
7 PF01307 Plant_vir_prot: Plant 13.4 96 0.0021 21.8 0.9 23 59-81 36-58 (104)
8 KOG3822|consensus 11.6 52 0.0011 29.2 -1.1 33 1-34 108-140 (516)
9 PF08111 Pea-VEAacid: Pea-VEAa 11.4 80 0.0017 15.9 -0.0 6 2-7 9-14 (15)
10 PRK14891 50S ribosomal protein 11.3 96 0.0021 23.4 0.4 32 36-67 13-48 (131)
No 1
>KOG2418|consensus
Probab=99.96 E-value=2.7e-31 Score=222.18 Aligned_cols=78 Identities=44% Similarity=0.681 Sum_probs=51.8
Q ss_pred cCcc-cccccccccCCCCCCCCC----eeeeeecce-eecccccccCCcccCCCCceeeecchhhhhhhh---cCCCCCC
Q psy10939 21 LDIK-AQSKIGSLDNVKHKPGGG----IEEQKLDIK-AQSKIGSLDNVKHKPGGGEKKIFDDKDYLKQKA---AGDSKPT 91 (101)
Q Consensus 21 ld~~-v~SK~GS~dNikHkPgGG----I~~~Kld~k-~~SK~GS~dNi~H~PgGG~vKI~~~Kl~~k~~~---~gs~~n~ 91 (101)
.||+ |+|||||.+||||+|||| |+++|+||+ |+||||||-||.|+||||+|+|++.|||||+++ +||+||+
T Consensus 288 pdlkNVKSKIGSt~NiKhqpgGG~IVqIv~kk~dlshvtSKcGSLkNi~H~pGGG~V~Ies~KLDFk~~~qaKVGSldNa 367 (448)
T KOG2418|consen 288 PDLKNVKSKIGSTTNIKHQPGGGNIVQIVSKKRDLSHVTSKCGSLKNITHVPGGGNVQIESRKLDFKAAVQAKVGSLDNA 367 (448)
T ss_pred chhhhhhhhccccccccccCCCCcEEEEEeechhhhhhhhhhcccccccccCCCceeeeeeeecchhhhhhhhccccccc
Confidence 4555 666666666666666666 666666665 666666666666666666666666666666553 4666666
Q ss_pred cCCCCCC
Q psy10939 92 SEVPSEN 98 (101)
Q Consensus 92 ~hvPg~~ 98 (101)
+|||||-
T Consensus 368 hhvPggg 374 (448)
T KOG2418|consen 368 HHVPGGG 374 (448)
T ss_pred ccccCCC
Confidence 6666653
No 2
>KOG2418|consensus
Probab=99.96 E-value=3.4e-30 Score=215.58 Aligned_cols=85 Identities=47% Similarity=0.734 Sum_probs=79.1
Q ss_pred cccceeecCcc-cccccccccCCCCCCCCC---eeeeeecce--eecccccccCCcccCCCCceeeecchhhhhhhhc-C
Q psy10939 14 GQIEEQKLDIK-AQSKIGSLDNVKHKPGGG---IEEQKLDIK--AQSKIGSLDNVKHKPGGGEKKIFDDKDYLKQKAA-G 86 (101)
Q Consensus 14 ~kI~~kKld~~-v~SK~GS~dNikHkPgGG---I~~~Kld~k--~~SK~GS~dNi~H~PgGG~vKI~~~Kl~~k~~~~-g 86 (101)
|||+++|+||+ |+||||||.||.|+|||| |++.||||+ +++|+|||||++|+||||||||.++||.|++.++ +
T Consensus 313 VqIv~kk~dlshvtSKcGSLkNi~H~pGGG~V~Ies~KLDFk~~~qaKVGSldNahhvPgggnvKI~S~KLtfre~aKa~ 392 (448)
T KOG2418|consen 313 VQIVSKKRDLSHVTSKCGSLKNITHVPGGGNVQIESRKLDFKAAVQAKVGSLDNAHHVPGGGNVKIVSEKLTFREKAKAG 392 (448)
T ss_pred EEEEeechhhhhhhhhhcccccccccCCCceeeeeeeecchhhhhhhhcccccccccccCCCceeeeeeecchhhhcccc
Confidence 89999999999 999999999999999999 999999997 8999999999999999999999999999999975 5
Q ss_pred CCCCCcCCCCCC
Q psy10939 87 DSKPTSEVPSEN 98 (101)
Q Consensus 87 s~~n~~hvPg~~ 98 (101)
+-.++-++|-++
T Consensus 393 ~dhgAei~~~sp 404 (448)
T KOG2418|consen 393 SDHGAEIKPASP 404 (448)
T ss_pred ccCCceeeccCC
Confidence 667777777544
No 3
>PF00418 Tubulin-binding: Tau and MAP protein, tubulin-binding repeat; InterPro: IPR001084 Microtubules consist of tubulins as well as a group of additional proteins collectively known as the Microtubule Associated Proteins (MAP). MAP's have been classified into two classes: high molecular weight MAP's and Tau protein. The Tau proteins promote microtubule assembly and stabilise microtubules. The C-terminal region of these proteins contains three or four tandem repeats of a conserved domain of about thirty amino acid residues which is implicated in tubulin-binding and which seems to have a stiffening effect on microtubules.; GO: 0007026 negative regulation of microtubule depolymerization
Probab=99.62 E-value=1.1e-16 Score=93.68 Aligned_cols=29 Identities=69% Similarity=1.054 Sum_probs=24.1
Q ss_pred cccceeecCcc-cccccccccCCCCCCCCC
Q psy10939 14 GQIEEQKLDIK-AQSKIGSLDNVKHKPGGG 42 (101)
Q Consensus 14 ~kI~~kKld~~-v~SK~GS~dNikHkPgGG 42 (101)
+||+++|+||+ |+|||||+||++|+||||
T Consensus 1 VkI~~~K~d~~~v~SK~GS~~N~~H~PGGG 30 (31)
T PF00418_consen 1 VKIESKKLDFSNVQSKCGSLDNIKHKPGGG 30 (31)
T ss_pred CceeeeccccccccccccccccccccCCCC
Confidence 57888888887 888888888888888887
No 4
>PF00418 Tubulin-binding: Tau and MAP protein, tubulin-binding repeat; InterPro: IPR001084 Microtubules consist of tubulins as well as a group of additional proteins collectively known as the Microtubule Associated Proteins (MAP). MAP's have been classified into two classes: high molecular weight MAP's and Tau protein. The Tau proteins promote microtubule assembly and stabilise microtubules. The C-terminal region of these proteins contains three or four tandem repeats of a conserved domain of about thirty amino acid residues which is implicated in tubulin-binding and which seems to have a stiffening effect on microtubules.; GO: 0007026 negative regulation of microtubule depolymerization
Probab=99.54 E-value=1.7e-15 Score=88.62 Aligned_cols=28 Identities=71% Similarity=1.124 Sum_probs=26.9
Q ss_pred eeeeeecce-eecccccccCCcccCCCCc
Q psy10939 43 IEEQKLDIK-AQSKIGSLDNVKHKPGGGE 70 (101)
Q Consensus 43 I~~~Kld~k-~~SK~GS~dNi~H~PgGG~ 70 (101)
|+++|+||+ |+|||||+||++|+|||||
T Consensus 3 I~~~K~d~~~v~SK~GS~~N~~H~PGGGn 31 (31)
T PF00418_consen 3 IESKKLDFSNVQSKCGSLDNIKHKPGGGN 31 (31)
T ss_pred eeeeccccccccccccccccccccCCCCC
Confidence 889999996 9999999999999999997
No 5
>TIGR00307 S8e ribosomal protein S8.e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.
Probab=14.76 E-value=95 Score=23.02 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=34.2
Q ss_pred CCCCCCCCC---eeeeeecce-----eecccccccCCcccCCCCceeeecchhhhhhh
Q psy10939 34 NVKHKPGGG---IEEQKLDIK-----AQSKIGSLDNVKHKPGGGEKKIFDDKDYLKQK 83 (101)
Q Consensus 34 NikHkPgGG---I~~~Kld~k-----~~SK~GS~dNi~H~PgGG~vKI~~~Kl~~k~~ 83 (101)
.-+++|.|| ..-+|=-|. +.+++|..--..-.--|||.|+--..+|+-..
T Consensus 7 ~~~rk~TGGr~~~~rkKRk~ElGr~pa~T~ig~~r~~~vR~rGGn~K~Ralr~~~~Nv 64 (127)
T TIGR00307 7 RSRRKPTGGKYRQARKKRKYELGREPAETKIGERRIKKVRTRGGNKKVRLLRDETANV 64 (127)
T ss_pred CCcccCCCCccccccccchhhcCCCccccccCccEEEEEEcCCCceEEEEEEeeeeEE
Confidence 346789999 334444442 88999996434456789999998777776544
No 6
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=14.03 E-value=52 Score=22.49 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=11.8
Q ss_pred cCcc-cccccccccCCCC-CCCCCeeeee
Q psy10939 21 LDIK-AQSKIGSLDNVKH-KPGGGIEEQK 47 (101)
Q Consensus 21 ld~~-v~SK~GS~dNikH-kPgGGI~~~K 47 (101)
.|+. |-.-..|-+ |-. -|||||.+++
T Consensus 45 ~~l~~V~~~L~~e~-ip~LPPGGGl~sKr 72 (81)
T PF07830_consen 45 PDLVYVMRTLASED-IPGLPPGGGLASKR 72 (81)
T ss_dssp --HHHHHHHHHHTT--SS--TTTTCGGGH
T ss_pred CCHHHHHHHHHhcc-CCCCcCCcCHHHHH
Confidence 4554 444455554 554 4566676654
No 7
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=13.40 E-value=96 Score=21.85 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=16.5
Q ss_pred ccCCcccCCCCceeeecchhhhh
Q psy10939 59 LDNVKHKPGGGEKKIFDDKDYLK 81 (101)
Q Consensus 59 ~dNi~H~PgGG~vKI~~~Kl~~k 81 (101)
=||+.+.|=||.=+==++.+++-
T Consensus 36 GDniH~LPhGG~YrDGTK~I~Y~ 58 (104)
T PF01307_consen 36 GDNIHSLPHGGRYRDGTKSINYN 58 (104)
T ss_pred CCCCCCCCCCCcccCCCcEEEeC
Confidence 39999999998766555555443
No 8
>KOG3822|consensus
Probab=11.56 E-value=52 Score=29.22 Aligned_cols=33 Identities=36% Similarity=0.544 Sum_probs=26.9
Q ss_pred CcccccccccccccccceeecCcccccccccccC
Q psy10939 1 MVDSYVNENQLFNGQIEEQKLDIKAQSKIGSLDN 34 (101)
Q Consensus 1 ~~~~~~~~~~~~~~kI~~kKld~~v~SK~GS~dN 34 (101)
||.|||-||-.|..|-++--|.+..++ -|+++.
T Consensus 108 ~v~SYVGEN~e~~rQYLsGELelElTP-QGTLAE 140 (516)
T KOG3822|consen 108 MVSSYVGENTEFERQYLSGELELELTP-QGTLAE 140 (516)
T ss_pred HHHhhhccchHHHHHhhcceeEEEecC-CchHHH
Confidence 688999999999999999988887654 356544
No 9
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=11.35 E-value=80 Score=15.92 Aligned_cols=6 Identities=83% Similarity=1.243 Sum_probs=4.7
Q ss_pred cccccc
Q psy10939 2 VDSYVN 7 (101)
Q Consensus 2 ~~~~~~ 7 (101)
|||||.
T Consensus 9 vdsyve 14 (15)
T PF08111_consen 9 VDSYVE 14 (15)
T ss_pred hhhhcc
Confidence 789884
No 10
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=11.28 E-value=96 Score=23.38 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=24.2
Q ss_pred CCCCCCCeeeeeecce----eecccccccCCcccCC
Q psy10939 36 KHKPGGGIEEQKLDIK----AQSKIGSLDNVKHKPG 67 (101)
Q Consensus 36 kHkPgGGI~~~Kld~k----~~SK~GS~dNi~H~Pg 67 (101)
+--||=|+...+-|-+ ++|||=++--++..|.
T Consensus 13 kIyPG~G~~fVR~DGkvf~FcssKC~k~f~~kRnPR 48 (131)
T PRK14891 13 EIEPGTGTMFVRKDGTVLHFVDSKCEKNYDLGREAR 48 (131)
T ss_pred cccCCCCcEEEecCCCEEEEecHHHHHHHHccCCCc
Confidence 3459999777777765 8999988777777774
Done!