Query psy10939
Match_columns 101
No_of_seqs 103 out of 173
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 22:21:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j20_J 30S ribosomal protein S 16.3 65 0.0022 22.7 1.7 51 34-84 7-66 (127)
2 3jyw_S 60S ribosomal protein L 10.4 76 0.0026 18.7 0.5 30 38-67 7-40 (45)
3 1z0s_A Probable inorganic poly 8.2 80 0.0027 24.2 0.0 14 29-42 14-27 (278)
4 3u5c_I RP19, S14, YS9, 40S rib 7.8 1.3E+02 0.0046 22.8 1.1 49 35-84 9-66 (200)
5 2kco_A 30S ribosomal protein S 7.2 41 0.0014 24.1 -1.9 51 34-84 7-66 (133)
6 3agc_A RED chlorophyll catabol 4.7 4.1E+02 0.014 20.9 2.3 32 43-79 63-98 (276)
7 1bm8_A Transcription factor MB 4.5 1.2E+02 0.004 20.2 -0.8 14 2-15 27-40 (99)
8 2j23_A Thioredoxin; immune pro 4.5 4.8E+02 0.016 15.4 2.1 27 57-83 3-29 (121)
9 4i3s_G Outer domain of HIV-1 G 4.3 2.1E+02 0.0072 21.4 0.4 12 61-72 174-185 (190)
10 3j21_V 50S ribosomal protein L 4.2 1.6E+02 0.0056 18.5 -0.2 31 37-67 14-48 (66)
No 1
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=16.26 E-value=65 Score=22.74 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCCCCCCCC---eeeeeecce-----eecccccccCCcc-cCCCCceeeecchhhhhhhh
Q psy10939 34 NVKHKPGGG---IEEQKLDIK-----AQSKIGSLDNVKH-KPGGGEKKIFDDKDYLKQKA 84 (101)
Q Consensus 34 NikHkPgGG---I~~~Kld~k-----~~SK~GS~dNi~H-~PgGG~vKI~~~Kl~~k~~~ 84 (101)
.-+++|.|| ...+|=-|. +.+++|..+-++- .--|||.|+.--.+|+-..+
T Consensus 7 ~~krk~TGGk~~~~rkKRK~ElGr~pa~T~ig~~~r~~~vR~rGGN~K~ralr~~~aNvs 66 (127)
T 3j20_J 7 RSLKKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANVF 66 (127)
T ss_dssp SSSBCTTSCBCCCCSCCCGGGCBCCCCCCEECSSCEEEEEECTTSCEEEEEEEESBCCCC
T ss_pred CCcccCCCCcccccccchhhhcCCCccccEeCCceEEEEEEccCCceEEEEEEeccceEE
Confidence 356789999 334444442 7899998555543 46799999876666654443
No 2
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=10.36 E-value=76 Score=18.70 Aligned_cols=30 Identities=33% Similarity=0.330 Sum_probs=20.6
Q ss_pred CCCCCeeeeeecce----eecccccccCCcccCC
Q psy10939 38 KPGGGIEEQKLDIK----AQSKIGSLDNVKHKPG 67 (101)
Q Consensus 38 kPgGGI~~~Kld~k----~~SK~GS~dNi~H~Pg 67 (101)
-||-|+.-.+-|-+ +.|||=++-..+..|-
T Consensus 7 yPG~G~~~Vr~Dgkvf~FcssKc~k~~~~krnPr 40 (45)
T 3jyw_S 7 YPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPR 40 (45)
T ss_dssp CTTCCCEECTTTSCCCCCCSHHHHGGGTSCCCTT
T ss_pred cCCCCeEEEecCCCEEEEECHHHHHHHHcCCCCc
Confidence 38888666556654 7888877776666663
No 3
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=8.18 E-value=80 Score=24.17 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCC
Q psy10939 29 IGSLDNVKHKPGGG 42 (101)
Q Consensus 29 ~GS~dNikHkPgGG 42 (101)
+-+++|++++||||
T Consensus 14 ~~~~~~~~~~~~~~ 27 (278)
T 1z0s_A 14 IPTTENLYFQGGGG 27 (278)
T ss_dssp --------------
T ss_pred CCccceEEEcCCCc
Confidence 34678999999997
No 4
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I
Probab=7.79 E-value=1.3e+02 Score=22.78 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=33.3
Q ss_pred CCCCCCCC---eeeeeecce-----eecccccccCCcc-cCCCCceeeecchhhhhhhh
Q psy10939 35 VKHKPGGG---IEEQKLDIK-----AQSKIGSLDNVKH-KPGGGEKKIFDDKDYLKQKA 84 (101)
Q Consensus 35 ikHkPgGG---I~~~Kld~k-----~~SK~GS~dNi~H-~PgGG~vKI~~~Kl~~k~~~ 84 (101)
-+++|.|| ...+|=-|. +.+++|. ..++- .--|||.|+---.+|+-..+
T Consensus 9 ~kRk~TGGkr~~~rKKRK~ElGR~pa~TkiG~-~ri~~vR~RGGN~K~Ralr~d~~N~s 66 (200)
T 3u5c_I 9 HKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALRIETGNFS 66 (200)
T ss_dssp SSCBTTTBCCCCCSCCCGGGEECCCCCBCBSS-CCEEEEECSSSCEEEEESSBCEEEEE
T ss_pred cCcCCCCCccccchhhhHHhcCCCCcccccCC-cEEEEEeccCCceeeeeEeeceeEEE
Confidence 46789999 444444442 7899998 55544 34699999987777765443
No 5
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}
Probab=7.24 E-value=41 Score=24.14 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=32.4
Q ss_pred CCCCCCCCC---eeeeeecce-----eecccccccCC-cccCCCCceeeecchhhhhhhh
Q psy10939 34 NVKHKPGGG---IEEQKLDIK-----AQSKIGSLDNV-KHKPGGGEKKIFDDKDYLKQKA 84 (101)
Q Consensus 34 NikHkPgGG---I~~~Kld~k-----~~SK~GS~dNi-~H~PgGG~vKI~~~Kl~~k~~~ 84 (101)
.-+.+|.|| ..-+|=-|. +.+|+|...-+ .=..-|||.|+---.+++-..+
T Consensus 7 ~~krk~TGgk~~~~rkKRk~ElGr~pa~Tkig~~~~~~~vR~rGGN~K~r~lr~~~~nv~ 66 (133)
T 2kco_A 7 PDNRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVL 66 (133)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSHHHHHHHHHTCCCCCCCCCCCCCEEEEE
T ss_pred CCcccCCCCccccccchhhhhcCCCCcccEecCceEEEEEeccCCceeeeEeeeeeEEEE
Confidence 346789999 333444442 78999953333 3457899999877666654443
No 6
>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A
Probab=4.66 E-value=4.1e+02 Score=20.88 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=23.4
Q ss_pred eeeee----ecceeecccccccCCcccCCCCceeeecchhh
Q psy10939 43 IEEQK----LDIKAQSKIGSLDNVKHKPGGGEKKIFDDKDY 79 (101)
Q Consensus 43 I~~~K----ld~k~~SK~GS~dNi~H~PgGG~vKI~~~Kl~ 79 (101)
|.+.+ +||-++|=+.+. .|.||...|.+--..
T Consensus 63 ~~sg~~~s~id~~i~SWl~~~-----l~~G~al~I~nlv~y 98 (276)
T 3agc_A 63 IRSGDKSSPIDFVIGSWIHCK-----IPTGVSLNITSISGF 98 (276)
T ss_dssp EEEBCTTCSEEEEEEEEEEEE-----CTTSCEEEEEEEEEE
T ss_pred eccCCCCCCcceeehhhhcCc-----ccCccceeheeeeee
Confidence 66666 888777777766 788888888654443
No 7
>1bm8_A Transcription factor MBP1; cell cycle, cyclins, DNA synthesis, helix-turn-helix DNA- binding domain; 1.71A {Saccharomyces cerevisiae} SCOP: d.34.1.1
Probab=4.52 E-value=1.2e+02 Score=20.20 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=11.6
Q ss_pred cccccccccccccc
Q psy10939 2 VDSYVNENQLFNGQ 15 (101)
Q Consensus 2 ~~~~~~~~~~~~~k 15 (101)
-|+|||-.|||..-
T Consensus 27 ~d~~VNaT~ilk~a 40 (99)
T 1bm8_A 27 KDDWVNATHILKAA 40 (99)
T ss_dssp TTCCEEHHHHHHHT
T ss_pred CCCeEEHHHhhhhc
Confidence 38999999999873
No 8
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=4.48 E-value=4.8e+02 Score=15.43 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=18.2
Q ss_pred ccccCCcccCCCCceeeecchhhhhhh
Q psy10939 57 GSLDNVKHKPGGGEKKIFDDKDYLKQK 83 (101)
Q Consensus 57 GS~dNi~H~PgGG~vKI~~~Kl~~k~~ 83 (101)
||----.|.||++++...+..-+|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~~f~~~ 29 (121)
T 2j23_A 3 GSHHHHHHLVPRGSVQVISSYDQFKQV 29 (121)
T ss_dssp ----CCCCCCCCCCEEECCSHHHHHHH
T ss_pred CcccccccccCCcceEEcCCHHHHHHH
Confidence 555666788999999887777777754
No 9
>4i3s_G Outer domain of HIV-1 GP120 (KER2018 OD4.2.2); antibody affinity, antibody specificity, binding sites, HIV infections, antibodies, HIV envelope protein GP120; 2.85A {Human immunodeficiency virus} PDB: 4i3r_G
Probab=4.31 E-value=2.1e+02 Score=21.40 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=9.7
Q ss_pred CCcccCCCCcee
Q psy10939 61 NVKHKPGGGEKK 72 (101)
Q Consensus 61 Ni~H~PgGG~vK 72 (101)
|-..+||||+.+
T Consensus 174 ~etfrP~ggdmr 185 (190)
T 4i3s_G 174 CETFRPGGGDMR 185 (190)
T ss_dssp SEEEEECCCSCC
T ss_pred eEEECCCCCccc
Confidence 567899999875
No 10
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=4.23 E-value=1.6e+02 Score=18.49 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=21.9
Q ss_pred CCCCCCeeeeeecce----eecccccccCCcccCC
Q psy10939 37 HKPGGGIEEQKLDIK----AQSKIGSLDNVKHKPG 67 (101)
Q Consensus 37 HkPgGGI~~~Kld~k----~~SK~GS~dNi~H~Pg 67 (101)
=-||-|+.-.+-|-+ +.|||=++-..+..|-
T Consensus 14 IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPR 48 (66)
T 3j21_V 14 FEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPR 48 (66)
T ss_dssp CCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTT
T ss_pred ccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcc
Confidence 358888666666654 7888887776666664
Done!