Query psy10939
Match_columns 101
No_of_seqs 103 out of 173
Neff 2.8
Searched_HMMs 13730
Date Fri Aug 16 22:21:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2tpta2 c.27.1.1 (A:71-335) Th 9.3 26 0.0019 24.2 -0.5 14 25-38 47-60 (265)
2 d1brwa2 c.27.1.1 (A:71-330) Py 8.9 29 0.0021 23.9 -0.3 14 25-38 44-57 (260)
3 d1uoua2 c.27.1.1 (A:101-373) T 8.6 25 0.0019 24.4 -0.8 15 52-66 48-62 (273)
4 d1nuia2 g.41.3.2 (A:10-63) Zin 6.8 61 0.0044 18.3 0.5 11 54-64 9-19 (54)
5 d2iu5a2 a.121.1.1 (A:72-180) T 6.8 24 0.0017 22.8 -1.5 15 4-18 13-27 (109)
6 d1rk8b_ d.232.1.1 (B:) Mago na 5.7 63 0.0046 21.9 0.1 14 23-36 95-109 (141)
7 d1a6qa1 a.159.1.1 (A:297-368) 4.8 89 0.0065 18.5 0.4 27 20-47 31-59 (72)
8 d1twfc2 d.181.1.1 (C:42-172) R 4.5 1.4E+02 0.01 18.1 1.2 21 46-66 110-131 (131)
9 d1h7za_ b.21.1.1 (A:) Adenovir 4.3 1E+02 0.0073 21.3 0.4 20 13-32 14-38 (191)
10 d1v4aa1 a.24.16.4 (A:287-437) 4.1 1.6E+02 0.012 17.6 1.3 13 30-42 25-37 (151)
No 1
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=9.31 E-value=26 Score=24.20 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=9.5
Q ss_pred cccccccccCCCCC
Q psy10939 25 AQSKIGSLDNVKHK 38 (101)
Q Consensus 25 v~SK~GS~dNikHk 38 (101)
++|||||-|=+..-
T Consensus 47 vSS~sGSADvLEaL 60 (265)
T d2tpta2 47 LGHTGGTLDKLESI 60 (265)
T ss_dssp CTTSCCHHHHHTTS
T ss_pred CCCCCchHHHHHhc
Confidence 77788877665544
No 2
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.91 E-value=29 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=8.6
Q ss_pred cccccccccCCCCC
Q psy10939 25 AQSKIGSLDNVKHK 38 (101)
Q Consensus 25 v~SK~GS~dNikHk 38 (101)
++|||||-|=+..-
T Consensus 44 vSSksGSADvLEaL 57 (260)
T d1brwa2 44 LGHTGGTIDKLESV 57 (260)
T ss_dssp BTTBCCHHHHHTTS
T ss_pred cCCCCchHHHHHhc
Confidence 66777776655443
No 3
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=25 Score=24.41 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.9
Q ss_pred eecccccccCCcccC
Q psy10939 52 AQSKIGSLDNVKHKP 66 (101)
Q Consensus 52 ~~SK~GS~dNi~H~P 66 (101)
++|||||-|=+.+.+
T Consensus 48 iSS~sGSADvLEaL~ 62 (273)
T d1uoua2 48 LGHTGGTLDKLESIP 62 (273)
T ss_dssp BTTBCCHHHHHTTST
T ss_pred cCCCCchHHHHHhcc
Confidence 899999999888765
No 4
>d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of primase-helicase {Bacteriophage T7 [TaxId: 10760]}
Probab=6.78 E-value=61 Score=18.31 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=8.5
Q ss_pred cccccccCCcc
Q psy10939 54 SKIGSLDNVKH 64 (101)
Q Consensus 54 SK~GS~dNi~H 64 (101)
..|||.|+..-
T Consensus 9 p~CgSSDa~a~ 19 (54)
T d1nuia2 9 DNCGSSDGNSL 19 (54)
T ss_dssp SSSCCSSCEEE
T ss_pred CCCCCCCCCeE
Confidence 57999998763
No 5
>d2iu5a2 a.121.1.1 (A:72-180) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=6.78 E-value=24 Score=22.84 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=11.7
Q ss_pred cccccccccccccce
Q psy10939 4 SYVNENQLFNGQIEE 18 (101)
Q Consensus 4 ~~~~~~~~~~~kI~~ 18 (101)
.|++|||||-.+|.-
T Consensus 13 ryldenqifyqkifv 27 (109)
T d2iu5a2 13 RYLDENQIFYQKIFV 27 (109)
T ss_dssp HHHHHTHHHHHHHHH
T ss_pred HHccccceeheeeeE
Confidence 588899998877743
No 6
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.67 E-value=63 Score=21.85 Aligned_cols=14 Identities=50% Similarity=0.615 Sum_probs=10.4
Q ss_pred cc-cccccccccCCC
Q psy10939 23 IK-AQSKIGSLDNVK 36 (101)
Q Consensus 23 ~~-v~SK~GS~dNik 36 (101)
++ ++||+||+-.+.
T Consensus 95 isF~TsKigSl~dv~ 109 (141)
T d1rk8b_ 95 ISFTTSKTGSLVDVN 109 (141)
T ss_dssp EEEEEECCCSHHHHT
T ss_pred EEEEecccccHhhhc
Confidence 45 789999986554
No 7
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.77 E-value=89 Score=18.54 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=15.2
Q ss_pred ecCcc-cccccccccCCCCCCCCC-eeeee
Q psy10939 20 KLDIK-AQSKIGSLDNVKHKPGGG-IEEQK 47 (101)
Q Consensus 20 Kld~~-v~SK~GS~dNikHkPgGG-I~~~K 47 (101)
..||. |-.-.-| +||-.-|-|| |.+++
T Consensus 31 ~~dl~~Vm~~L~~-e~Ip~LPPGGGL~sK~ 59 (72)
T d1a6qa1 31 VPDLVHVMRTLAS-ENIPSLPPGGELASKR 59 (72)
T ss_dssp CCCHHHHHHHHHH-TTCSSCCTTTGGGGGH
T ss_pred CchHHHHHHHHHh-cCCCCCCCCccHHHHH
Confidence 35666 4444444 4777765555 66554
No 8
>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.55 E-value=1.4e+02 Score=18.07 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=14.8
Q ss_pred eeecceeeccccc-ccCCcccC
Q psy10939 46 QKLDIKAQSKIGS-LDNVKHKP 66 (101)
Q Consensus 46 ~Kld~k~~SK~GS-~dNi~H~P 66 (101)
|+|.|.|..+.|. .+.++..|
T Consensus 110 Q~i~l~a~a~kG~Gk~HAK~sP 131 (131)
T d1twfc2 110 QELKLTCVAKKGIAKEHAKWGP 131 (131)
T ss_dssp CEEEEEEEEEEECTTTCGGGCC
T ss_pred CEEEEEEEEEecccccCcEeCc
Confidence 8888888877775 45566554
No 9
>d1h7za_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human adenovirus type 3 [TaxId: 45659]}
Probab=4.28 E-value=1e+02 Score=21.25 Aligned_cols=20 Identities=40% Similarity=0.307 Sum_probs=11.7
Q ss_pred ccccceeec--Ccc---cccccccc
Q psy10939 13 NGQIEEQKL--DIK---AQSKIGSL 32 (101)
Q Consensus 13 ~~kI~~kKl--d~~---v~SK~GS~ 32 (101)
|.+|...|. |=+ +-+||||.
T Consensus 14 NC~I~~~~~~~DsKLtL~LTKcGsq 38 (191)
T d1h7za_ 14 NCIIEYGKQNPDSKLTLILVKNGGI 38 (191)
T ss_dssp CBCCSTTCSSCCEEEEEEEEEETTE
T ss_pred CEEEeccccCCCceEEEEEEccCCE
Confidence 445654443 333 78889985
No 10
>d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
Probab=4.14 E-value=1.6e+02 Score=17.62 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=9.0
Q ss_pred ccccCCCCCCCCC
Q psy10939 30 GSLDNVKHKPGGG 42 (101)
Q Consensus 30 GS~dNikHkPgGG 42 (101)
|..-|+|+-|||=
T Consensus 25 ~~~~dlK~~~GGL 37 (151)
T d1v4aa1 25 GLTDNIKLGAGGI 37 (151)
T ss_dssp CSCCBTTTSTTSH
T ss_pred CCCCCcCCCCCce
Confidence 3335999988763
Done!