RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10939
         (101 letters)



>gnl|CDD|144129 pfam00418, Tubulin-binding, Tau and MAP protein, tubulin-binding
          repeat.  This family includes the vertebrate proteins
          MAP2, MAP4 and Tau, as well as other animal homologs.
          MAP4 is present in many tissues but is usually absent
          from neurons; MAP2 and Tau are mainly neuronal. Members
          of this family have the ability to bind to and
          stabilise microtubules. As a result, they are involved
          in neuronal migration, supporting dendrite elongation,
          and regulating microtubules during mitotic metaphase.
          Note that Tau is involved in neurofibrillary tangle
          formation in Alzheimer's disease and some other
          dementias. This family features a C-terminal
          microtubule binding repeat that contains a conserved
          KXGS motif.
          Length = 31

 Score = 38.9 bits (91), Expect = 9e-06
 Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 1/29 (3%)

Query: 15 QIEEQKLDIK-AQSKIGSLDNVKHKPGGG 42
          QI  +KLD+K  QSK GS DN+KH+PGGG
Sbjct: 2  QIVNKKLDLKNVQSKCGSTDNIKHQPGGG 30



 Score = 37.0 bits (86), Expect = 4e-05
 Identities = 18/28 (64%), Positives = 22/28 (78%), Gaps = 1/28 (3%)

Query: 43 IEEQKLDIK-AQSKIGSLDNVKHKPGGG 69
          I  +KLD+K  QSK GS DN+KH+PGGG
Sbjct: 3  IVNKKLDLKNVQSKCGSTDNIKHQPGGG 30


>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit
           alpha; Provisional.
          Length = 1046

 Score = 27.2 bits (60), Expect = 1.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 25  AQSKIGSLDNVKHKPGGGIEEQKLDIKAQSKIGSLDNV 62
           A   +GS++ V+H    G++E+KL       I  LDNV
Sbjct: 684 AVCNLGSINLVEHIVNDGLDEEKLSETISIAIRILDNV 721


>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
          Length = 1713

 Score = 26.4 bits (58), Expect = 3.5
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 6   VNENQLF-NGQIEEQKLDIKAQSKIGSLDNVKHKPGGGIEEQKLDIKAQSKIGSLDNVKH 64
           +NE     N    +     K + K  S    K    GG       +KA++ +G ++ +K 
Sbjct: 410 INEQGFLENPSACDSDRSFKTRDKSDSSSVSKEGENGGAAAVSAGLKARA-VGPIEKIKF 468

Query: 65  K 65
           K
Sbjct: 469 K 469


>gnl|CDD|237546 PRK13889, PRK13889, conjugal transfer relaxase TraA; Provisional.
          Length = 988

 Score = 25.0 bits (55), Expect = 8.5
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 7/33 (21%)

Query: 17  EEQKLDIKAQSKIGSLDNVKHKPGGGIEEQKLD 49
           E Q + ++ QS+IG+           IE + ++
Sbjct: 195 EAQGIALEPQSQIGA-------AAQRIEGEGIE 220


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.306    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,952,382
Number of extensions: 413478
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 12
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.1 bits)