RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10939
         (101 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.16
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 17/64 (26%)

Query: 6    VNENQLFNGQI----EEQKLDIKAQSKIGSLDNVKHKPGGGIEEQKLDIKAQSKIGSLDN 61
            VN N + N Q     + + LD    + +  L+ +K         QK+DI    K  SL+ 
Sbjct: 1844 VNYN-VENQQYVAAGDLRALD--TVTNV--LNFIK--------LQKIDIIELQKSLSLEE 1890

Query: 62   VKHK 65
            V+  
Sbjct: 1891 VEGH 1894


>1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase,
           propeller, catalysis; 1.50A {Bacillus subtilis} SCOP:
           b.67.2.1
          Length = 293

 Score = 24.2 bits (53), Expect = 9.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 40  GGGIEEQKLDIKAQSKIGSLDNVKHKPGGG 69
             GI+  KLD       GSL ++  +P  G
Sbjct: 152 WSGIKLTKLDKSTMKPTGSLYSIAARPNNG 181


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.306    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,427,274
Number of extensions: 74502
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 5
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.6 bits)