RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10939
         (101 letters)



>d1bf5a2 b.2.5.5 (A:317-568) STAT-1, DNA-binding domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 252

 Score = 23.3 bits (50), Expect = 6.8
 Identities = 5/47 (10%), Positives = 16/47 (34%)

Query: 54  SKIGSLDNVKHKPGGGEKKIFDDKDYLKQKAAGDSKPTSEVPSENQF 100
           +++  + + +           D  + L +K  G +     +    +F
Sbjct: 180 AQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPNASPDGLIPWTRF 226


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 352,296
Number of extensions: 14592
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 4
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.3 bits)