Query psy10941
Match_columns 110
No_of_seqs 124 out of 1385
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 22:24:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 3.6E-25 7.9E-30 132.5 10.6 107 1-109 22-150 (160)
2 KOG0027|consensus 99.9 7.4E-23 1.6E-27 123.3 10.9 107 1-109 10-143 (151)
3 KOG0030|consensus 99.9 7.6E-22 1.6E-26 114.2 9.0 106 1-109 13-145 (152)
4 KOG0031|consensus 99.9 4.2E-21 9E-26 112.9 10.1 107 1-109 34-159 (171)
5 KOG0028|consensus 99.8 4.5E-20 9.8E-25 109.2 9.9 107 1-109 35-164 (172)
6 PTZ00183 centrin; Provisional 99.8 6.5E-19 1.4E-23 106.2 10.8 107 1-109 19-148 (158)
7 PTZ00184 calmodulin; Provision 99.8 1.5E-18 3.3E-23 103.5 11.2 106 2-109 14-142 (149)
8 KOG0037|consensus 99.7 6.4E-16 1.4E-20 95.9 9.0 106 3-110 61-183 (221)
9 KOG0036|consensus 99.6 1.1E-14 2.4E-19 97.6 10.6 107 1-109 16-140 (463)
10 cd05022 S-100A13 S-100A13: S-1 99.6 8.4E-15 1.8E-19 80.7 4.9 58 50-109 9-69 (89)
11 KOG0034|consensus 99.5 1.4E-13 3.1E-18 85.1 9.4 105 3-110 37-170 (187)
12 PF13499 EF-hand_7: EF-hand do 99.5 1.2E-13 2.6E-18 72.2 7.0 65 1-75 2-66 (66)
13 PF13499 EF-hand_7: EF-hand do 99.5 1.1E-13 2.4E-18 72.3 5.7 57 51-109 2-62 (66)
14 KOG0044|consensus 99.5 3.4E-13 7.3E-18 83.6 7.3 56 53-110 104-170 (193)
15 cd05027 S-100B S-100B: S-100B 99.5 2.7E-13 5.9E-18 74.7 5.9 58 50-109 9-73 (88)
16 PLN02964 phosphatidylserine de 99.4 6.2E-13 1.4E-17 94.8 8.7 92 1-109 145-237 (644)
17 cd05029 S-100A6 S-100A6: S-100 99.4 3E-12 6.4E-17 70.5 5.7 57 51-109 12-73 (88)
18 cd05031 S-100A10_like S-100A10 99.3 5.4E-12 1.2E-16 70.3 5.7 59 49-109 8-73 (94)
19 cd05026 S-100Z S-100Z: S-100Z 99.3 5.6E-12 1.2E-16 70.2 5.7 59 50-110 11-76 (93)
20 cd05025 S-100A1 S-100A1: S-100 99.3 7.9E-12 1.7E-16 69.4 5.7 59 49-109 9-74 (92)
21 KOG0037|consensus 99.3 1.8E-11 3.8E-16 76.3 7.8 86 2-109 127-214 (221)
22 cd05022 S-100A13 S-100A13: S-1 99.3 1.9E-11 4.2E-16 67.3 5.9 65 1-79 10-77 (89)
23 KOG0027|consensus 99.3 2E-11 4.3E-16 73.5 6.1 59 49-109 8-66 (151)
24 COG5126 FRQ1 Ca2+-binding prot 99.3 3.2E-11 6.8E-16 72.7 6.7 63 1-77 94-156 (160)
25 cd00052 EH Eps15 homology doma 99.3 1.2E-11 2.7E-16 64.4 4.4 54 52-109 2-55 (67)
26 PF13833 EF-hand_8: EF-hand do 99.2 2.1E-11 4.4E-16 61.2 4.8 46 62-109 1-47 (54)
27 smart00027 EH Eps15 homology d 99.2 4E-11 8.6E-16 67.1 5.8 56 50-109 11-66 (96)
28 cd05027 S-100B S-100B: S-100B 99.2 8.1E-11 1.8E-15 64.8 6.9 64 1-78 10-80 (88)
29 cd00052 EH Eps15 homology doma 99.2 2.2E-10 4.8E-15 59.6 7.3 62 1-78 1-62 (67)
30 cd00213 S-100 S-100: S-100 dom 99.2 4.4E-11 9.5E-16 65.8 4.8 59 49-109 8-73 (88)
31 cd00051 EFh EF-hand, calcium b 99.2 1.4E-10 3.1E-15 58.8 5.8 57 51-109 2-58 (63)
32 cd05023 S-100A11 S-100A11: S-1 99.2 1.3E-10 2.7E-15 64.2 5.8 58 50-109 10-74 (89)
33 KOG4223|consensus 99.2 7.8E-11 1.7E-15 77.2 5.8 105 2-108 166-298 (325)
34 smart00027 EH Eps15 homology d 99.2 2E-10 4.3E-15 64.2 6.5 75 1-91 12-91 (96)
35 cd05025 S-100A1 S-100A1: S-100 99.2 2.8E-10 6E-15 63.2 6.9 65 1-79 11-82 (92)
36 cd05031 S-100A10_like S-100A10 99.1 1.9E-10 4.2E-15 64.1 6.1 65 1-79 10-81 (94)
37 KOG0038|consensus 99.1 1.3E-10 2.7E-15 68.6 5.2 93 3-110 75-172 (189)
38 PF14658 EF-hand_9: EF-hand do 99.1 5E-10 1.1E-14 57.8 6.8 61 3-77 2-64 (66)
39 PF13833 EF-hand_8: EF-hand do 99.1 7.6E-10 1.6E-14 55.4 6.9 52 12-77 1-53 (54)
40 cd00051 EFh EF-hand, calcium b 99.1 1.1E-09 2.3E-14 55.5 7.2 61 1-75 2-62 (63)
41 KOG0377|consensus 99.1 1.3E-09 2.7E-14 74.6 9.1 106 2-109 467-609 (631)
42 cd05026 S-100Z S-100Z: S-100Z 99.1 9.5E-10 2.1E-14 61.2 6.8 64 2-79 13-83 (93)
43 KOG0044|consensus 99.1 1.1E-09 2.3E-14 68.2 7.4 91 4-109 31-122 (193)
44 cd05029 S-100A6 S-100A6: S-100 99.0 2.1E-09 4.6E-14 59.2 7.1 62 3-78 14-80 (88)
45 cd00252 SPARC_EC SPARC_EC; ext 99.0 7.5E-10 1.6E-14 63.8 5.0 55 49-109 48-102 (116)
46 PTZ00183 centrin; Provisional 99.0 1.3E-09 2.8E-14 65.6 6.2 77 31-109 33-112 (158)
47 cd05030 calgranulins Calgranul 99.0 7.3E-10 1.6E-14 61.0 4.4 58 50-109 9-73 (88)
48 cd00213 S-100 S-100: S-100 dom 99.0 2.1E-09 4.5E-14 59.1 6.1 64 1-78 10-80 (88)
49 PTZ00184 calmodulin; Provision 99.0 2.2E-09 4.7E-14 63.8 5.9 77 31-109 27-106 (149)
50 PLN02964 phosphatidylserine de 98.9 5.6E-09 1.2E-13 75.0 8.3 79 2-94 182-274 (644)
51 cd00252 SPARC_EC SPARC_EC; ext 98.9 3.9E-09 8.4E-14 60.9 6.0 58 1-76 50-107 (116)
52 KOG4223|consensus 98.9 2.8E-09 6E-14 70.1 4.9 107 2-110 80-223 (325)
53 PF14658 EF-hand_9: EF-hand do 98.9 5.9E-09 1.3E-13 53.9 4.9 54 54-109 3-58 (66)
54 PF00036 EF-hand_1: EF hand; 98.8 9.2E-09 2E-13 45.0 4.0 29 50-78 1-29 (29)
55 KOG0034|consensus 98.8 3E-08 6.5E-13 61.6 7.1 67 2-78 107-176 (187)
56 KOG0031|consensus 98.7 3E-08 6.4E-13 59.1 5.4 54 49-108 32-85 (171)
57 KOG0028|consensus 98.7 2.5E-08 5.4E-13 59.7 4.9 58 50-109 34-91 (172)
58 PF13405 EF-hand_6: EF-hand do 98.7 3.2E-08 6.9E-13 44.0 4.1 30 50-79 1-31 (31)
59 PF00036 EF-hand_1: EF hand; 98.7 1.3E-08 2.9E-13 44.5 2.5 28 1-28 2-29 (29)
60 cd05024 S-100A10 S-100A10: A s 98.7 7.7E-08 1.7E-12 53.0 5.6 56 51-109 10-70 (91)
61 cd05023 S-100A11 S-100A11: S-1 98.7 1.9E-07 4.2E-12 51.5 6.7 64 2-79 12-82 (89)
62 PF14788 EF-hand_10: EF hand; 98.7 2.3E-07 4.9E-12 45.4 6.1 50 15-78 1-50 (51)
63 PF13405 EF-hand_6: EF-hand do 98.6 3.7E-08 7.9E-13 43.8 2.5 29 1-29 2-31 (31)
64 KOG0041|consensus 98.6 6.4E-08 1.4E-12 60.1 4.4 57 51-109 101-157 (244)
65 cd05030 calgranulins Calgranul 98.6 2E-07 4.3E-12 51.3 5.7 62 3-78 12-80 (88)
66 KOG0036|consensus 98.6 3.2E-07 6.9E-12 62.4 7.3 75 2-94 85-159 (463)
67 KOG0030|consensus 98.6 1.2E-07 2.6E-12 55.6 4.1 60 48-109 10-71 (152)
68 PF12763 EF-hand_4: Cytoskelet 98.4 1E-06 2.2E-11 49.9 6.0 56 49-109 10-65 (104)
69 PF13202 EF-hand_5: EF hand; P 98.3 1.4E-06 2.9E-11 36.7 3.5 24 52-75 2-25 (25)
70 PF13202 EF-hand_5: EF hand; P 98.3 5.5E-07 1.2E-11 37.9 2.1 25 1-25 1-25 (25)
71 KOG0040|consensus 98.3 2.6E-06 5.7E-11 65.7 6.6 85 3-94 2257-2343(2399)
72 PF05042 Caleosin: Caleosin re 98.2 3.5E-05 7.6E-10 47.1 8.9 104 2-108 10-159 (174)
73 KOG0377|consensus 98.2 7E-06 1.5E-10 56.7 6.3 63 2-78 550-616 (631)
74 PRK12309 transaldolase/EF-hand 98.2 2.9E-06 6.2E-11 58.3 4.0 47 49-110 334-380 (391)
75 KOG2643|consensus 98.2 3.7E-06 7.9E-11 57.8 4.4 104 4-109 323-447 (489)
76 KOG4666|consensus 98.1 3.9E-06 8.5E-11 55.8 3.6 91 2-109 262-353 (412)
77 PF14788 EF-hand_10: EF hand; 98.1 5.5E-06 1.2E-10 40.6 3.0 44 65-110 1-44 (51)
78 KOG1029|consensus 98.0 1.1E-05 2.5E-10 58.9 5.5 56 51-110 197-252 (1118)
79 PRK12309 transaldolase/EF-hand 98.0 1.3E-05 2.8E-10 55.1 5.3 50 2-78 337-386 (391)
80 cd05024 S-100A10 S-100A10: A s 98.0 0.00013 2.8E-09 40.2 7.6 67 3-79 12-78 (91)
81 KOG2643|consensus 97.9 8E-05 1.7E-09 51.4 7.8 103 4-109 238-378 (489)
82 PF10591 SPARC_Ca_bdg: Secrete 97.9 1.9E-06 4.1E-11 49.5 -0.2 55 51-109 56-110 (113)
83 PF12763 EF-hand_4: Cytoskelet 97.9 0.00016 3.4E-09 41.0 7.1 59 2-77 13-71 (104)
84 KOG4065|consensus 97.9 7.6E-05 1.7E-09 42.7 5.7 57 53-109 71-139 (144)
85 KOG0038|consensus 97.8 8.9E-05 1.9E-09 44.2 5.6 68 3-80 112-180 (189)
86 KOG0041|consensus 97.8 0.00012 2.5E-09 45.9 6.1 57 2-58 102-164 (244)
87 PF10591 SPARC_Ca_bdg: Secrete 97.8 5.4E-06 1.2E-10 47.7 0.1 56 2-73 57-112 (113)
88 KOG0751|consensus 97.7 0.0002 4.4E-09 50.4 6.4 107 2-109 111-238 (694)
89 smart00054 EFh EF-hand, calciu 97.6 0.00011 2.4E-09 30.7 3.2 27 51-77 2-28 (29)
90 smart00054 EFh EF-hand, calciu 97.6 8.8E-05 1.9E-09 31.0 2.8 27 1-27 2-28 (29)
91 KOG0046|consensus 97.6 0.00023 5.1E-09 50.3 5.9 55 52-109 22-79 (627)
92 KOG2562|consensus 97.6 0.0002 4.3E-09 49.8 5.4 103 2-109 228-337 (493)
93 KOG4251|consensus 97.5 0.0002 4.4E-09 46.3 4.1 99 2-108 239-338 (362)
94 KOG0040|consensus 97.4 0.00025 5.5E-09 55.5 4.4 60 48-109 2252-2318(2399)
95 KOG4251|consensus 97.3 0.00018 3.8E-09 46.6 2.3 62 47-110 99-163 (362)
96 KOG2562|consensus 97.1 0.00099 2.1E-08 46.5 4.2 85 5-108 284-372 (493)
97 KOG0169|consensus 96.6 0.0062 1.3E-07 45.0 5.5 92 2-94 139-251 (746)
98 KOG0751|consensus 96.6 0.0063 1.4E-07 43.2 5.1 107 2-110 182-309 (694)
99 KOG0046|consensus 96.5 0.012 2.6E-07 42.1 5.9 56 1-57 21-85 (627)
100 PF09279 EF-hand_like: Phospho 96.4 0.0056 1.2E-07 33.0 3.3 58 51-109 2-63 (83)
101 KOG1029|consensus 96.0 0.015 3.3E-07 43.4 4.7 60 2-77 198-257 (1118)
102 PF08726 EFhand_Ca_insen: Ca2+ 95.5 0.011 2.3E-07 31.0 1.7 55 47-109 4-63 (69)
103 PF09279 EF-hand_like: Phospho 95.4 0.057 1.2E-06 29.0 4.6 63 1-78 2-70 (83)
104 KOG2243|consensus 95.3 0.019 4.2E-07 45.7 3.1 53 54-109 4062-4114(5019)
105 KOG4065|consensus 95.1 0.16 3.5E-06 29.4 5.8 61 4-74 72-142 (144)
106 PF05517 p25-alpha: p25-alpha 94.9 0.16 3.5E-06 30.8 5.8 54 54-109 7-63 (154)
107 KOG3555|consensus 94.9 0.077 1.7E-06 36.3 4.7 60 2-79 253-312 (434)
108 KOG1955|consensus 94.2 0.075 1.6E-06 38.1 3.6 55 51-109 233-287 (737)
109 KOG1707|consensus 94.1 0.2 4.2E-06 36.6 5.6 29 51-79 317-345 (625)
110 KOG4578|consensus 94.1 0.022 4.7E-07 38.6 0.9 55 53-109 337-392 (421)
111 KOG4578|consensus 93.8 0.077 1.7E-06 36.0 2.9 63 3-78 337-399 (421)
112 KOG3555|consensus 93.6 0.11 2.3E-06 35.6 3.4 57 47-109 248-304 (434)
113 KOG0042|consensus 93.5 0.087 1.9E-06 38.3 3.0 59 49-109 593-651 (680)
114 KOG3866|consensus 93.4 0.12 2.6E-06 34.9 3.4 54 54-109 249-318 (442)
115 cd08315 Death_TRAILR_DR4_DR5 D 92.8 0.98 2.1E-05 25.2 7.6 76 15-92 16-91 (96)
116 KOG0042|consensus 92.6 0.34 7.4E-06 35.4 4.8 62 3-78 597-658 (680)
117 KOG2871|consensus 92.4 0.39 8.4E-06 33.3 4.7 46 47-92 307-352 (449)
118 KOG1955|consensus 92.0 0.43 9.3E-06 34.4 4.7 37 41-77 257-293 (737)
119 KOG0998|consensus 91.5 0.1 2.2E-06 39.8 1.4 59 47-109 281-339 (847)
120 PF05517 p25-alpha: p25-alpha 90.9 2.4 5.1E-05 25.7 6.7 63 2-78 2-70 (154)
121 PF05042 Caleosin: Caleosin re 90.7 1.2 2.6E-05 27.6 5.2 67 2-76 99-165 (174)
122 KOG4347|consensus 90.6 0.66 1.4E-05 34.3 4.6 51 53-106 559-609 (671)
123 KOG0035|consensus 90.0 0.58 1.2E-05 35.9 4.1 60 49-110 747-811 (890)
124 KOG4666|consensus 89.0 0.56 1.2E-05 32.1 3.1 57 51-109 261-318 (412)
125 KOG4347|consensus 88.4 0.45 9.7E-06 35.2 2.5 55 2-71 558-612 (671)
126 cd08316 Death_FAS_TNFRSF6 Deat 87.1 3.7 8E-05 23.0 8.0 78 14-93 16-94 (97)
127 PF11116 DUF2624: Protein of u 85.4 2.5 5.4E-05 23.1 3.8 31 64-94 13-43 (85)
128 KOG0169|consensus 84.9 0.87 1.9E-05 34.3 2.5 55 53-109 140-194 (746)
129 KOG2871|consensus 84.2 1.4 3E-05 30.7 3.0 40 1-40 311-350 (449)
130 cd08313 Death_TNFR1 Death doma 83.7 5.1 0.00011 21.6 5.9 65 15-81 8-73 (80)
131 PF01023 S_100: S-100/ICaBP ty 83.6 3.4 7.4E-05 19.5 3.8 28 50-77 7-36 (44)
132 KOG4004|consensus 83.1 0.37 7.9E-06 30.6 -0.0 51 54-109 192-244 (259)
133 PLN02952 phosphoinositide phos 82.7 17 0.00036 27.3 8.1 68 12-94 13-84 (599)
134 KOG2303|consensus 82.6 17 0.00037 26.8 7.8 86 7-94 533-639 (706)
135 PTZ00373 60S Acidic ribosomal 82.0 7.3 0.00016 22.5 5.0 44 51-94 5-48 (112)
136 KOG1707|consensus 81.8 3.9 8.4E-05 30.3 4.6 31 2-32 318-348 (625)
137 KOG0035|consensus 81.0 8.6 0.00019 30.0 6.3 34 1-34 749-782 (890)
138 cd08784 Death_DRs Death Domain 80.1 7.1 0.00015 20.8 6.1 68 15-85 8-76 (79)
139 PF00404 Dockerin_1: Dockerin 79.2 3.2 7E-05 16.4 2.2 16 9-24 1-16 (21)
140 KOG1265|consensus 79.2 25 0.00054 27.9 8.1 61 49-109 221-293 (1189)
141 PF11116 DUF2624: Protein of u 79.0 8.5 0.00018 21.0 6.6 67 14-94 13-82 (85)
142 cd05833 Ribosomal_P2 Ribosomal 79.0 9.9 0.00021 21.8 5.0 43 52-94 4-46 (109)
143 KOG3442|consensus 78.6 8.3 0.00018 22.6 4.5 46 11-67 51-96 (132)
144 PF03672 UPF0154: Uncharacteri 78.1 7.2 0.00016 20.1 3.7 32 63-94 29-60 (64)
145 TIGR01639 P_fal_TIGR01639 Plas 77.1 7.8 0.00017 19.6 3.7 31 64-94 8-38 (61)
146 PF12174 RST: RCD1-SRO-TAF4 (R 76.7 3.2 6.9E-05 21.8 2.3 54 22-93 12-66 (70)
147 KOG3449|consensus 75.2 13 0.00029 21.3 4.9 44 51-94 3-46 (112)
148 TIGR03573 WbuX N-acetyl sugar 74.6 25 0.00054 24.3 6.7 58 28-91 285-342 (343)
149 PF09336 Vps4_C: Vps4 C termin 74.2 9.2 0.0002 19.5 3.6 26 15-40 29-54 (62)
150 KOG3449|consensus 73.2 11 0.00024 21.6 4.0 38 4-41 6-43 (112)
151 PRK00523 hypothetical protein; 73.1 11 0.00023 19.9 3.6 32 63-94 37-68 (72)
152 PF04558 tRNA_synt_1c_R1: Glut 72.6 8.4 0.00018 23.7 3.7 61 33-94 68-129 (164)
153 PF03979 Sigma70_r1_1: Sigma-7 70.4 6.1 0.00013 21.2 2.5 31 62-94 18-48 (82)
154 PLN00138 large subunit ribosom 69.7 19 0.00041 20.8 4.9 42 53-94 5-46 (113)
155 PF09068 EF-hand_2: EF hand; 69.6 20 0.00044 21.0 7.1 26 53-78 101-126 (127)
156 PF09069 EF-hand_3: EF-hand; 68.7 18 0.00038 20.0 6.5 63 2-77 6-75 (90)
157 COG3763 Uncharacterized protei 68.3 16 0.00034 19.2 3.6 32 63-94 36-67 (71)
158 COG2818 Tag 3-methyladenine DN 68.3 5.4 0.00012 25.1 2.2 42 47-88 53-94 (188)
159 PF08328 ASL_C: Adenylosuccina 67.5 22 0.00047 20.6 5.6 55 15-91 53-107 (115)
160 PF06384 ICAT: Beta-catenin-in 66.8 9.8 0.00021 20.4 2.7 24 69-92 20-43 (78)
161 TIGR00135 gatC glutamyl-tRNA(G 66.2 17 0.00036 19.9 3.8 29 66-94 1-29 (93)
162 PF07879 PHB_acc_N: PHB/PHA ac 65.7 17 0.00037 18.7 3.4 36 56-91 10-55 (64)
163 PRK01844 hypothetical protein; 65.4 19 0.0004 19.1 3.6 32 63-94 36-67 (72)
164 PF07492 Trehalase_Ca-bi: Neut 64.8 5.3 0.00011 17.3 1.2 19 88-108 2-20 (30)
165 KOG3866|consensus 63.6 47 0.001 23.0 6.1 68 3-76 248-323 (442)
166 PF08672 APC2: Anaphase promot 62.5 19 0.00041 18.2 3.4 31 64-94 10-45 (60)
167 PRK00034 gatC aspartyl/glutamy 61.8 23 0.0005 19.4 3.8 30 65-94 2-31 (95)
168 KOG0506|consensus 61.8 9.3 0.0002 27.8 2.6 67 4-77 91-158 (622)
169 KOG0869|consensus 61.6 20 0.00043 22.0 3.7 42 53-94 74-115 (168)
170 PF08461 HTH_12: Ribonuclease 61.4 14 0.0003 19.0 2.7 33 62-94 10-42 (66)
171 PTZ00373 60S Acidic ribosomal 61.3 27 0.00059 20.2 4.1 37 5-41 9-45 (112)
172 KOG1954|consensus 60.5 9.6 0.00021 27.1 2.5 52 53-109 448-499 (532)
173 KOG2301|consensus 59.4 12 0.00026 31.3 3.2 59 47-108 1415-1477(1592)
174 PF01885 PTS_2-RNA: RNA 2'-pho 58.0 33 0.00072 21.6 4.4 36 59-94 26-61 (186)
175 cd05833 Ribosomal_P2 Ribosomal 57.4 35 0.00076 19.6 4.1 37 5-41 7-43 (109)
176 PF09373 PMBR: Pseudomurein-bi 57.2 16 0.00035 15.9 2.2 16 62-77 1-16 (33)
177 PF11848 DUF3368: Domain of un 57.0 21 0.00046 17.0 3.6 33 62-94 14-47 (48)
178 PRK00819 RNA 2'-phosphotransfe 57.0 38 0.00083 21.2 4.5 36 59-94 27-62 (179)
179 PF05379 Peptidase_C23: Carlav 56.8 32 0.00069 18.9 3.9 27 33-59 30-56 (89)
180 PF02761 Cbl_N2: CBL proto-onc 56.7 32 0.00069 18.9 4.0 44 64-109 21-64 (85)
181 KOG2243|consensus 56.0 28 0.00061 29.5 4.5 55 4-59 4062-4122(5019)
182 TIGR00624 tag DNA-3-methyladen 55.5 12 0.00026 23.4 2.2 46 47-92 51-96 (179)
183 TIGR02675 tape_meas_nterm tape 55.3 17 0.00036 19.2 2.4 16 12-27 27-42 (75)
184 PF02037 SAP: SAP domain; Int 55.1 19 0.00041 15.9 2.3 18 15-32 3-20 (35)
185 TIGR03573 WbuX N-acetyl sugar 53.8 15 0.00032 25.4 2.5 33 62-94 299-331 (343)
186 PLN02952 phosphoinositide phos 53.6 22 0.00047 26.7 3.5 32 63-94 14-47 (599)
187 PF07862 Nif11: Nitrogen fixat 53.5 20 0.00043 17.0 2.4 21 67-87 28-48 (49)
188 PF05099 TerB: Tellurite resis 53.0 8.5 0.00018 22.4 1.2 17 12-28 36-52 (140)
189 TIGR00988 hip integration host 52.6 30 0.00066 18.8 3.3 43 67-109 2-48 (94)
190 PF13829 DUF4191: Domain of un 52.3 46 0.00099 21.8 4.4 40 55-94 157-196 (224)
191 PF12631 GTPase_Cys_C: Catalyt 52.1 34 0.00073 17.8 3.4 42 53-94 27-72 (73)
192 cd07313 terB_like_2 tellurium 51.9 30 0.00064 19.0 3.3 29 12-40 12-42 (104)
193 PRK14981 DNA-directed RNA poly 51.6 39 0.00084 19.4 3.7 28 67-94 80-107 (112)
194 TIGR01848 PHA_reg_PhaR polyhyd 51.0 46 0.001 19.1 4.9 61 6-80 10-80 (107)
195 PRK10353 3-methyl-adenine DNA 50.9 12 0.00025 23.7 1.6 46 47-92 52-97 (187)
196 smart00513 SAP Putative DNA-bi 50.9 23 0.00049 15.5 2.6 19 15-33 3-21 (35)
197 KOG0039|consensus 50.8 64 0.0014 24.5 5.6 52 54-108 23-82 (646)
198 PLN02222 phosphoinositide phos 50.7 43 0.00094 25.1 4.6 41 52-94 28-70 (581)
199 PLN02228 Phosphoinositide phos 50.5 59 0.0013 24.4 5.2 58 48-109 23-86 (567)
200 COG0721 GatC Asp-tRNAAsn/Glu-t 50.1 43 0.00094 18.6 3.6 30 65-94 2-31 (96)
201 PF13331 DUF4093: Domain of un 50.0 34 0.00073 18.7 3.1 28 62-91 59-86 (87)
202 COG2818 Tag 3-methyladenine DN 49.4 16 0.00034 23.1 1.9 80 2-81 58-156 (188)
203 TIGR02928 orc1/cdc6 family rep 49.3 83 0.0018 21.5 7.9 81 10-94 256-341 (365)
204 KOG0998|consensus 48.9 21 0.00045 28.0 2.9 55 51-109 13-67 (847)
205 COG1460 Uncharacterized protei 48.9 48 0.001 19.2 3.7 29 66-94 80-108 (114)
206 PF13624 SurA_N_3: SurA N-term 48.5 21 0.00047 21.1 2.5 45 44-92 98-145 (154)
207 cd08306 Death_FADD Fas-associa 48.1 45 0.00096 18.0 5.8 67 19-87 14-81 (86)
208 TIGR03798 ocin_TIGR03798 bacte 47.6 38 0.00082 17.1 3.2 28 66-93 25-52 (64)
209 PF07128 DUF1380: Protein of u 47.3 41 0.00089 20.2 3.4 29 66-94 27-55 (139)
210 PF02337 Gag_p10: Retroviral G 46.5 51 0.0011 18.2 4.1 23 19-41 12-34 (90)
211 PF12486 DUF3702: ImpA domain 46.4 41 0.00088 20.5 3.4 23 6-28 76-98 (148)
212 PF01325 Fe_dep_repress: Iron 46.3 39 0.00085 16.9 3.9 45 54-109 13-57 (60)
213 KOG2301|consensus 45.4 50 0.0011 28.0 4.5 66 2-67 1420-1494(1592)
214 PF07553 Lipoprotein_Ltp: Host 45.2 37 0.00081 16.3 3.2 31 63-93 16-47 (48)
215 PF08044 DUF1707: Domain of un 44.6 36 0.00079 16.7 2.5 32 62-93 20-51 (53)
216 PF03352 Adenine_glyco: Methyl 43.6 13 0.00028 23.3 1.0 46 47-92 47-92 (179)
217 PF09682 Holin_LLH: Phage holi 43.3 62 0.0013 18.3 3.8 38 57-94 59-100 (108)
218 PF14513 DAG_kinase_N: Diacylg 43.3 73 0.0016 19.1 6.3 32 63-94 46-78 (138)
219 PF09012 FeoC: FeoC like trans 43.0 33 0.00072 17.5 2.4 28 62-94 11-38 (69)
220 PLN02230 phosphoinositide phos 42.9 1.4E+02 0.0031 22.6 6.2 68 2-77 32-102 (598)
221 PF06648 DUF1160: Protein of u 42.4 71 0.0015 18.8 5.7 41 51-94 39-80 (122)
222 PF12793 SgrR_N: Sugar transpo 41.7 69 0.0015 18.4 4.8 38 51-94 6-43 (115)
223 PF07308 DUF1456: Protein of u 39.0 59 0.0013 16.9 5.4 29 66-94 30-62 (68)
224 PF14848 HU-DNA_bdg: DNA-bindi 38.9 80 0.0017 18.3 4.0 33 62-94 25-57 (124)
225 PF09061 Stirrup: Stirrup; In 38.4 22 0.00049 18.4 1.2 31 63-93 47-77 (79)
226 KOG0719|consensus 38.4 1.2E+02 0.0026 20.2 4.9 71 20-94 94-164 (264)
227 PF08414 NADPH_Ox: Respiratory 37.8 78 0.0017 17.9 4.3 43 47-94 28-70 (100)
228 KOG4403|consensus 36.5 75 0.0016 23.1 3.8 55 2-56 71-128 (575)
229 PF13623 SurA_N_2: SurA N-term 36.3 98 0.0021 18.6 3.9 15 27-41 101-115 (145)
230 PLN02859 glutamine-tRNA ligase 35.9 2E+02 0.0043 22.8 6.1 58 36-94 73-131 (788)
231 COG0735 Fur Fe2+/Zn2+ uptake r 35.7 99 0.0021 18.5 7.6 62 17-94 4-65 (145)
232 cd08815 Death_TNFRSF25_DR3 Dea 35.7 74 0.0016 17.1 3.0 14 66-79 9-22 (77)
233 cd08318 Death_NMPP84 Death dom 35.6 76 0.0016 17.1 6.4 58 20-79 20-77 (86)
234 KOG0713|consensus 35.6 86 0.0019 21.9 3.9 47 47-94 29-81 (336)
235 PRK03095 prsA peptidylprolyl i 35.2 1.4E+02 0.003 20.0 6.5 16 12-27 31-46 (287)
236 PLN02230 phosphoinositide phos 35.1 1.7E+02 0.0038 22.2 5.6 47 47-94 27-76 (598)
237 KOG1411|consensus 34.1 1.2E+02 0.0025 21.7 4.3 53 54-107 352-405 (427)
238 COG5394 Uncharacterized protei 33.3 1.2E+02 0.0027 18.9 5.6 61 6-79 19-89 (193)
239 PRK06585 holA DNA polymerase I 33.3 1.6E+02 0.0034 20.1 6.2 56 22-77 152-209 (343)
240 KOG4403|consensus 33.0 49 0.0011 24.0 2.5 36 42-77 61-96 (575)
241 PF02969 TAF: TATA box binding 33.0 77 0.0017 16.4 3.4 60 16-75 4-65 (66)
242 cd04411 Ribosomal_P1_P2_L12p R 33.0 98 0.0021 17.6 5.3 29 66-94 17-45 (105)
243 PF10281 Ish1: Putative stress 32.9 54 0.0012 14.6 2.3 17 67-83 5-21 (38)
244 PF02459 Adeno_terminal: Adeno 32.8 1.6E+02 0.0035 22.0 5.1 41 54-94 460-500 (548)
245 KOG0506|consensus 32.2 89 0.0019 23.1 3.7 41 54-94 91-131 (622)
246 PF14193 DUF4315: Domain of un 31.6 93 0.002 16.9 3.4 23 70-94 38-60 (83)
247 PF09107 SelB-wing_3: Elongati 31.5 70 0.0015 15.5 2.5 28 62-94 7-34 (50)
248 PF07499 RuvA_C: RuvA, C-termi 31.4 66 0.0014 15.1 3.6 24 69-94 4-27 (47)
249 PF08006 DUF1700: Protein of u 31.2 78 0.0017 19.5 3.1 13 82-94 17-29 (181)
250 PRK05629 hypothetical protein; 31.0 1.7E+02 0.0037 19.8 5.8 51 27-77 141-191 (318)
251 PRK03968 DNA primase large sub 30.9 1.7E+02 0.0037 20.9 4.7 67 11-77 117-189 (399)
252 PRK06402 rpl12p 50S ribosomal 29.4 1.2E+02 0.0025 17.4 5.1 30 65-94 16-45 (106)
253 KOG4070|consensus 29.4 85 0.0018 19.4 2.8 41 54-94 62-107 (180)
254 PF11181 YflT: Heat induced st 29.0 1.1E+02 0.0024 17.0 3.5 24 69-94 71-94 (103)
255 PRK10945 gene expression modul 29.0 98 0.0021 16.4 3.3 22 71-92 24-45 (72)
256 PRK00199 ihfB integration host 28.9 1E+02 0.0023 16.7 3.7 43 67-109 2-48 (94)
257 PRK14958 DNA polymerase III su 28.6 2.5E+02 0.0053 20.8 6.7 75 16-94 178-256 (509)
258 PF04022 Staphylcoagulse: Stap 28.4 30 0.00064 14.2 0.6 9 98-106 17-25 (27)
259 KOG1954|consensus 27.8 89 0.0019 22.5 3.1 22 53-74 481-502 (532)
260 PF14223 UBN2: gag-polypeptide 27.8 1.2E+02 0.0026 17.0 5.8 54 22-77 54-108 (119)
261 TIGR03420 DnaA_homol_Hda DnaA 27.8 1.6E+02 0.0035 18.4 5.3 28 65-94 178-205 (226)
262 PF09494 Slx4: Slx4 endonuclea 27.6 94 0.002 15.7 5.7 47 34-80 13-59 (64)
263 TIGR00159 conserved hypothetic 27.5 52 0.0011 21.3 1.8 84 18-104 38-129 (211)
264 COG1321 TroR Mn-dependent tran 27.3 1.5E+02 0.0033 18.0 4.5 38 62-108 21-58 (154)
265 PF02671 PAH: Paired amphipath 27.2 78 0.0017 14.6 3.3 28 48-78 4-31 (47)
266 PRK00188 trpD anthranilate pho 27.0 2.2E+02 0.0047 19.7 6.3 49 43-94 13-62 (339)
267 PF14164 YqzH: YqzH-like prote 26.6 1E+02 0.0023 15.9 4.5 42 51-92 10-55 (64)
268 cd07894 Adenylation_RNA_ligase 26.5 2.3E+02 0.005 19.8 5.8 27 5-31 131-157 (342)
269 PF08100 Dimerisation: Dimeris 26.4 41 0.0009 16.4 1.0 23 54-76 11-33 (51)
270 cd05831 Ribosomal_P1 Ribosomal 26.2 1.3E+02 0.0029 17.0 4.0 33 62-94 14-46 (103)
271 COG1325 Predicted exosome subu 26.2 76 0.0016 19.3 2.2 38 66-103 61-99 (149)
272 cd00171 Sec7 Sec7 domain; Doma 25.8 1.8E+02 0.0038 18.2 8.9 36 59-94 143-180 (185)
273 COG3877 Uncharacterized protei 25.8 1.4E+02 0.0031 17.2 4.1 10 82-91 111-120 (122)
274 PF14932 HAUS-augmin3: HAUS au 25.7 2.1E+02 0.0045 19.0 5.5 23 55-78 33-55 (256)
275 PF12244 DUF3606: Protein of u 25.6 1E+02 0.0022 15.3 3.8 25 68-94 20-44 (57)
276 PF04282 DUF438: Family of unk 25.3 1.2E+02 0.0025 16.0 6.0 28 65-92 28-56 (71)
277 KOG2351|consensus 25.1 1.1E+02 0.0024 18.2 2.7 26 69-94 102-127 (134)
278 KOG4286|consensus 25.1 98 0.0021 24.3 3.0 38 3-40 474-511 (966)
279 TIGR03830 CxxCG_CxxCG_HTH puta 25.1 1.4E+02 0.0031 16.9 4.4 15 64-78 63-77 (127)
280 PRK12821 aspartyl/glutamyl-tRN 25.1 1.8E+02 0.004 21.3 4.2 35 60-94 383-417 (477)
281 TIGR01321 TrpR trp operon repr 25.0 88 0.0019 17.5 2.2 8 82-89 56-63 (94)
282 COG0541 Ffh Signal recognition 25.0 2.8E+02 0.0061 20.3 7.5 80 13-94 324-418 (451)
283 PRK11858 aksA trans-homoaconit 24.8 2.5E+02 0.0055 19.7 5.8 22 19-40 323-344 (378)
284 PF10437 Lip_prot_lig_C: Bacte 24.8 1.2E+02 0.0026 16.0 4.3 35 41-75 51-86 (86)
285 PF09687 PRESAN: Plasmodium RE 24.7 1.4E+02 0.003 16.7 3.5 29 66-94 6-34 (129)
286 PF03874 RNA_pol_Rpb4: RNA pol 24.6 1.4E+02 0.0031 16.8 4.2 25 69-93 88-112 (117)
287 PF10668 Phage_terminase: Phag 24.5 79 0.0017 16.1 1.8 23 3-26 11-33 (60)
288 cd08780 Death_TRADD Death Doma 24.4 1.4E+02 0.003 16.6 5.7 63 19-81 14-81 (90)
289 COG2058 RPP1A Ribosomal protei 24.2 1.5E+02 0.0033 17.0 4.7 30 65-94 16-45 (109)
290 TIGR02660 nifV_homocitr homoci 24.2 2.5E+02 0.0055 19.6 4.8 22 19-40 320-341 (365)
291 PF11829 DUF3349: Protein of u 24.2 1.5E+02 0.0031 16.7 5.0 65 16-94 20-85 (96)
292 PRK08691 DNA polymerase III su 24.1 3.6E+02 0.0077 21.2 6.7 75 16-94 178-256 (709)
293 PRK10391 oriC-binding nucleoid 23.6 1.3E+02 0.0028 15.9 2.7 26 69-94 17-43 (71)
294 PF06226 DUF1007: Protein of u 23.6 90 0.002 20.0 2.4 24 55-78 56-79 (212)
295 cd04790 HTH_Cfa-like_unk Helix 23.6 1.9E+02 0.0041 17.8 6.4 20 69-90 148-167 (172)
296 PF09066 B2-adapt-app_C: Beta2 23.4 76 0.0017 17.8 1.9 18 12-29 3-20 (114)
297 PF04433 SWIRM: SWIRM domain; 23.3 51 0.0011 17.6 1.1 37 54-94 42-78 (86)
298 PRK09462 fur ferric uptake reg 23.1 1.8E+02 0.0038 17.3 7.0 52 21-87 4-55 (148)
299 PF12995 DUF3879: Domain of un 23.1 2E+02 0.0044 18.0 5.2 48 16-63 2-57 (186)
300 PF03484 B5: tRNA synthetase B 22.9 1.2E+02 0.0027 15.4 3.6 17 78-94 15-31 (70)
301 TIGR01529 argR_whole arginine 22.8 1.6E+02 0.0035 17.7 3.3 30 12-41 13-42 (146)
302 PF13344 Hydrolase_6: Haloacid 22.8 49 0.0011 18.3 1.0 25 12-36 38-62 (101)
303 PF14178 YppF: YppF-like prote 22.8 85 0.0018 16.0 1.7 15 14-28 35-49 (60)
304 PF07592 DDE_Tnp_ISAZ013: Rhod 22.8 2.7E+02 0.0059 19.3 5.1 27 15-41 24-50 (311)
305 PRK07914 hypothetical protein; 22.7 2.5E+02 0.0055 19.0 5.5 54 23-76 139-192 (320)
306 PF13335 Mg_chelatase_2: Magne 22.7 1.5E+02 0.0033 16.3 3.9 61 12-75 28-93 (96)
307 cd01670 Death Death Domain: a 22.5 1.3E+02 0.0027 15.4 6.0 60 19-80 11-70 (79)
308 COG2812 DnaX DNA polymerase II 22.3 2.9E+02 0.0064 20.6 4.9 64 14-77 176-243 (515)
309 PF01369 Sec7: Sec7 domain; I 22.2 1.4E+02 0.0031 18.6 3.1 36 59-94 148-185 (190)
310 PF11236 DUF3037: Protein of u 21.9 74 0.0016 18.3 1.6 45 46-94 73-117 (118)
311 smart00657 RPOL4c DNA-directed 21.8 1.7E+02 0.0038 16.7 3.4 25 69-93 86-110 (118)
312 PF02437 Ski_Sno: SKI/SNO/DAC 21.7 1.8E+02 0.0039 16.9 3.8 51 16-78 56-111 (114)
313 PF09873 DUF2100: Uncharacteri 21.7 2.4E+02 0.0052 18.3 4.1 36 58-93 34-81 (215)
314 PLN02223 phosphoinositide phos 21.6 3.6E+02 0.0078 20.3 5.4 45 49-94 16-65 (537)
315 PRK05439 pantothenate kinase; 21.2 2.4E+02 0.0052 19.4 4.2 26 15-40 12-37 (311)
316 COG1274 PckA Phosphoenolpyruva 21.1 2.3E+02 0.005 21.3 4.1 58 28-90 541-599 (608)
317 PRK15047 N-hydroxyarylamine O- 21.0 2.8E+02 0.006 18.8 5.4 62 21-82 5-87 (281)
318 PRK10788 periplasmic folding c 20.9 3.7E+02 0.0081 20.2 7.6 17 25-41 105-121 (623)
319 smart00540 LEM in nuclear memb 20.9 1.2E+02 0.0025 14.4 1.9 18 15-32 5-22 (44)
320 TIGR01245 trpD anthranilate ph 20.8 3E+02 0.0064 19.0 4.9 14 64-77 25-38 (330)
321 cd00086 homeodomain Homeodomai 20.8 1.2E+02 0.0025 14.3 5.1 29 63-93 22-50 (59)
322 PF05321 HHA: Haemolysin expre 20.6 67 0.0015 16.2 1.1 26 69-94 10-35 (57)
323 PF01479 S4: S4 domain; Inter 20.6 1.1E+02 0.0024 14.0 2.6 22 23-44 5-26 (48)
324 PF07848 PaaX: PaaX-like prote 20.5 1.5E+02 0.0032 15.4 4.4 39 54-94 9-47 (70)
325 PRK15431 ferrous iron transpor 20.4 1.6E+02 0.0035 15.9 2.6 27 63-94 14-40 (78)
326 PHA02943 hypothetical protein; 20.4 2.3E+02 0.005 17.6 4.7 38 51-94 80-117 (165)
327 KOG4286|consensus 20.3 93 0.002 24.4 2.2 42 53-94 474-515 (966)
328 COG5069 SAC6 Ca2+-binding acti 20.3 1.2E+02 0.0027 22.5 2.7 50 54-109 29-81 (612)
329 PF12872 OST-HTH: OST-HTH/LOTU 20.2 1.4E+02 0.003 15.0 3.9 21 54-74 36-56 (74)
330 PF08671 SinI: Anti-repressor 20.1 99 0.0022 13.3 3.2 11 82-92 17-27 (30)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.93 E-value=3.6e-25 Score=132.53 Aligned_cols=107 Identities=38% Similarity=0.631 Sum_probs=98.4
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCC-----CCC-----------------cHHHHHHHHHhh
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGT-----KKK-----------------VYEDFLECLKLY 58 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-----~~~-----------------~~~~~~~~F~~~ 58 (110)
++++|+.+|++++|.|+.++|..+++++|..++.+.+..++.. ..+ +.+++++||+.|
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~f 101 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLF 101 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999998743 334 355566899999
Q ss_pred cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 59 DKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 59 D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
|++++|+|+..+++.+++.+|..+++++++.++..+ +.+++|.|+|++|
T Consensus 102 D~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~--d~d~dG~i~~~eF 150 (160)
T COG5126 102 DKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEY--DEDGDGEIDYEEF 150 (160)
T ss_pred CCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhc--CCCCCceEeHHHH
Confidence 999999999999999999999999999999999999 9999999999998
No 2
>KOG0027|consensus
Probab=99.90 E-value=7.4e-23 Score=123.25 Aligned_cols=107 Identities=33% Similarity=0.576 Sum_probs=97.4
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCC------CCCc---------------------HHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGT------KKKV---------------------YEDFLE 53 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~------~~~~---------------------~~~~~~ 53 (110)
++++|+.+|++++|.|+..++..+++.+|..|+..++..++.. +.++ .+++++
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~e 89 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKE 89 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHH
Confidence 4689999999999999999999999999999999999988732 2231 337788
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
||+.||++++|+|+.+|++.+|..+|.+++.++++.++..+ +.|+||.|+|++|
T Consensus 90 aF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~--d~d~dg~i~f~ef 143 (151)
T KOG0027|consen 90 AFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREV--DVDGDGKVNFEEF 143 (151)
T ss_pred HHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhc--CCCCCCeEeHHHH
Confidence 99999999999999999999999999999999999999999 9999999999887
No 3
>KOG0030|consensus
Probab=99.88 E-value=7.6e-22 Score=114.23 Aligned_cols=106 Identities=43% Similarity=0.741 Sum_probs=95.9
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCC--------CC-------------------cHHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTK--------KK-------------------VYEDFLE 53 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~--------~~-------------------~~~~~~~ 53 (110)
++++|..||...+|+|+..++..+|+++|..|++.++.+.++.. ++ +.++|++
T Consensus 13 ~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfve 92 (152)
T KOG0030|consen 13 FKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVE 92 (152)
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHH
Confidence 47899999999999999999999999999999999998886322 22 5666668
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
-++.||+.++|.|...|++++|.++|.+++++|++.+++.. .|++|.|.|+.|
T Consensus 93 gLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~---eD~nG~i~YE~f 145 (152)
T KOG0030|consen 93 GLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ---EDSNGCINYEAF 145 (152)
T ss_pred HHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc---cccCCcCcHHHH
Confidence 89999999999999999999999999999999999999987 689999999987
No 4
>KOG0031|consensus
Probab=99.86 E-value=4.2e-21 Score=112.92 Aligned_cols=107 Identities=24% Similarity=0.381 Sum_probs=97.9
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCC--CCC-----------------cHHHHHHHHHhhcCC
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGT--KKK-----------------VYEDFLECLKLYDKQ 61 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~~~-----------------~~~~~~~~F~~~D~~ 61 (110)
++++|.++|+|++|.|..++++..+.++|..++++++..+++. ++| +.+.+..||+.||.+
T Consensus 34 fKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~ 113 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDE 113 (171)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCcc
Confidence 4789999999999999999999999999999999999999843 445 445566899999999
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
++|+|..+.++++|...|.+++++|++.++..+ ..+..|.++|..|
T Consensus 114 ~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~--p~d~~G~~dy~~~ 159 (171)
T KOG0031|consen 114 GSGKIDEDYLRELLTTMGDRFTDEEVDEMYREA--PIDKKGNFDYKAF 159 (171)
T ss_pred CCCccCHHHHHHHHHHhcccCCHHHHHHHHHhC--CcccCCceeHHHH
Confidence 999999999999999999999999999999999 8888999999876
No 5
>KOG0028|consensus
Probab=99.84 E-value=4.5e-20 Score=109.19 Aligned_cols=107 Identities=29% Similarity=0.507 Sum_probs=97.4
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh------CCCCCcHHH-----------------HHHHHHh
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG------GTKKKVYED-----------------FLECLKL 57 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~-----------------~~~~F~~ 57 (110)
++++|..||++.+|+|+..||+.+++++|+.+...++..++ +.+.+++++ +..+|+.
T Consensus 35 i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl 114 (172)
T KOG0028|consen 35 IKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRL 114 (172)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 46789999999999999999999999999999999988887 235555544 4579999
Q ss_pred hcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 58 YDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 58 ~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+|.+++|+|+..+|+.++..+|..++++++.+++..+ +.+++|.|+-+||
T Consensus 115 ~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEA--d~d~dgevneeEF 164 (172)
T KOG0028|consen 115 FDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEA--DRDGDGEVNEEEF 164 (172)
T ss_pred ccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHh--cccccccccHHHH
Confidence 9999999999999999999999999999999999999 9999999999988
No 6
>PTZ00183 centrin; Provisional
Probab=99.81 E-value=6.5e-19 Score=106.24 Aligned_cols=107 Identities=27% Similarity=0.556 Sum_probs=94.5
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh------CCCCCcHHHHH-----------------HHHHh
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG------GTKKKVYEDFL-----------------ECLKL 57 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------------~~F~~ 57 (110)
++.+|..+|++++|.|+..+|..++..+|..++...+..++ +.+.+++++|. .+|+.
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~ 98 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRL 98 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 35789999999999999999999999999888888777665 34445555553 67999
Q ss_pred hcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 58 YDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 58 ~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+|++++|.|+..++..++..+|.++++.+++.++..+ +.+++|.|+|++|
T Consensus 99 ~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~--d~~~~g~i~~~ef 148 (158)
T PTZ00183 99 FDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEA--DRNGDGEISEEEF 148 (158)
T ss_pred hCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCCCcCcHHHH
Confidence 9999999999999999999999999999999999999 9999999999987
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.80 E-value=1.5e-18 Score=103.54 Aligned_cols=106 Identities=34% Similarity=0.687 Sum_probs=94.3
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh------CCCCCcHHHHH-----------------HHHHhh
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG------GTKKKVYEDFL-----------------ECLKLY 58 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------------~~F~~~ 58 (110)
+..|..+|.+++|.|+..+|..++..++..++.+.+..++ +.+.+++++|. .+|+.+
T Consensus 14 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~ 93 (149)
T PTZ00184 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVF 93 (149)
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhh
Confidence 5789999999999999999999999999988888777775 34456666554 589999
Q ss_pred cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 59 DKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 59 D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
|.+++|.|+..++..++..+|..++.++++.++..+ +.+++|.|+|+||
T Consensus 94 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~--d~~~~g~i~~~ef 142 (149)
T PTZ00184 94 DRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEF 142 (149)
T ss_pred CCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhc--CCCCCCcCcHHHH
Confidence 999999999999999999999999999999999999 9999999999998
No 8
>KOG0037|consensus
Probab=99.67 E-value=6.4e-16 Score=95.88 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=90.6
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHh------CCCCCcHHHHH----------HHHHhhcCCCCCc
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYALNLN-PTLATIEKLG------GTKKKVYEDFL----------ECLKLYDKQEDGT 65 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~------~~~~~~~~~~~----------~~F~~~D~~~~g~ 65 (110)
..|...|++.+|+|+-+|++++|.-.+.+ .+.+.++.++ ..+.+.+.||. ++|+.+|+|++|+
T Consensus 61 ~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~ 140 (221)
T KOG0037|consen 61 GWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGT 140 (221)
T ss_pred HHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCc
Confidence 46889999999999999999999865544 4556666555 56667777765 6899999999999
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccCC
Q psy10941 66 MLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 66 i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
|+..||++++..+|..++++-.+.+++++ +...+|+|.|++|+
T Consensus 141 I~~sEL~~Al~~~Gy~Lspq~~~~lv~ky--d~~~~g~i~FD~FI 183 (221)
T KOG0037|consen 141 IDSSELRQALTQLGYRLSPQFYNLLVRKY--DRFGGGRIDFDDFI 183 (221)
T ss_pred ccHHHHHHHHHHcCcCCCHHHHHHHHHHh--ccccCCceeHHHHH
Confidence 99999999999999999999999999999 76669999999884
No 9
>KOG0036|consensus
Probab=99.61 E-value=1.1e-14 Score=97.58 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=94.6
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHh------CCCCCcHHHHH-----------HHHHhhcCCC
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLN-PTLATIEKLG------GTKKKVYEDFL-----------ECLKLYDKQE 62 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~------~~~~~~~~~~~-----------~~F~~~D~~~ 62 (110)
++.+|+.+|.+++|+++..++.+.+.+++.+ ++......++ .++.+++.+|+ +.|+.+|.++
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~h 95 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEH 95 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhcccc
Confidence 3678999999999999999999999999888 5555555554 45666777776 6899999999
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 63 DGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+|.|+..|+...++.+|.++++++++.+++++ |.++++.|+++||
T Consensus 96 dG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~--d~~g~~~I~~~e~ 140 (463)
T KOG0036|consen 96 DGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHM--DKDGKATIDLEEW 140 (463)
T ss_pred CCccCHHHHHHHHHHhCCccCHHHHHHHHHHh--ccCCCeeeccHHH
Confidence 99999999999999999999999999999999 9999999999986
No 10
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.55 E-value=8.4e-15 Score=80.69 Aligned_cols=58 Identities=9% Similarity=0.231 Sum_probs=54.9
Q ss_pred HHHHHHHhhcC-CCCCceeHHHHHHHHHH-hCCCCCH-HHHHHHHHhcccCCCCCCceeeccC
Q psy10941 50 DFLECLKLYDK-QEDGTMLGAELHHILIS-LGERMEE-SEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 50 ~~~~~F~~~D~-~~~g~i~~~e~~~~l~~-~g~~~~~-~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.++.+|+.||+ +++|+|+.+|++.++.. +|..+++ ++++.+++.+ |.|+||+|+|+||
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~--D~d~DG~I~F~EF 69 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNL--DVNQDSKLSFEEF 69 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHh--CCCCCCCCcHHHH
Confidence 46789999999 99999999999999999 9988888 9999999999 9999999999998
No 11
>KOG0034|consensus
Probab=99.53 E-value=1.4e-13 Score=85.08 Aligned_cols=105 Identities=25% Similarity=0.445 Sum_probs=82.6
Q ss_pred hhhhhhcCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHh---CCCC-CcHHHHHH-----------------HHHhhcC
Q psy10941 3 FAFDIYDTE-GNGQIDAVDLGRVLYALNLNPTLATIEKLG---GTKK-KVYEDFLE-----------------CLKLYDK 60 (110)
Q Consensus 3 ~~f~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~-----------------~F~~~D~ 60 (110)
..|..+|.+ +.|.++.++|..+. .+...|-...+...+ ..+. +++++|.+ ||+.||.
T Consensus 37 ~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~ 115 (187)
T KOG0034|consen 37 ERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDL 115 (187)
T ss_pred HHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcC
Confidence 467888988 89999999999998 455666666665554 2333 78888872 8999999
Q ss_pred CCCCceeHHHHHHHHHHh-CCCCC--HHH----HHHHHHhcccCCCCCCceeeccCC
Q psy10941 61 QEDGTMLGAELHHILISL-GERME--ESE----VNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 61 ~~~g~i~~~e~~~~l~~~-g~~~~--~~e----~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
+++|.|+++++..++..+ |...+ ++. ++.++..+ |.++||+|+|+||.
T Consensus 116 ~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~--D~d~DG~IsfeEf~ 170 (187)
T KOG0034|consen 116 DGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEA--DTDGDGKISFEEFC 170 (187)
T ss_pred CCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHh--CCCCCCcCcHHHHH
Confidence 999999999999999976 43344 333 56677888 99999999999983
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.51 E-value=1.2e-13 Score=72.17 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=58.1
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHIL 75 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l 75 (110)
++++|+.+|++++|+|+..|+..++..++..++...+... +..+|+.+|++++|.|+.+||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~----------~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEM----------IDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHH----------HHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHH----------HHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999988887776654 5667999999999999999999875
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.49 E-value=1.1e-13 Score=72.27 Aligned_cols=57 Identities=30% Similarity=0.532 Sum_probs=50.1
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHH----HHHhcccCCCCCCceeeccC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNE----VLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~----~~~~~~~d~~~~g~i~~~ef 109 (110)
++++|+.+|++++|.|+.+|+..++..++...++.+++. ++..+ |.|++|.|+|+||
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~d~dG~i~~~Ef 62 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREF--DTDGDGRISFDEF 62 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHH--TTTSSSSEEHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--CCCCcCCCcHHHH
Confidence 567899999999999999999999999997665655544 59999 9999999999998
No 14
>KOG0044|consensus
Probab=99.46 E-value=3.4e-13 Score=83.58 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=47.8
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHh----CC-------CCCHHHHHHHHHhcccCCCCCCceeeccCC
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISL----GE-------RMEESEVNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~----g~-------~~~~~e~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
.+|+.+|.+|+|.|++.|+..+++++ |. ..+.+-++.+|+.+ |.|+||.|+++||.
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~--D~n~Dg~lT~eef~ 170 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKM--DKNKDGKLTLEEFI 170 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHc--CCCCCCcccHHHHH
Confidence 47999999999999999999988864 31 23566688999999 99999999999984
No 15
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.45 E-value=2.7e-13 Score=74.65 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=54.2
Q ss_pred HHHHHHHhhc-CCCCC-ceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 50 DFLECLKLYD-KQEDG-TMLGAELHHILIS-----LGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 50 ~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-----~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.++++|+.|| ++|+| .|+.++++.+|+. +|...++++++.+++.+ |.|++|+|+|+||
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~--D~n~dG~v~f~eF 73 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL--DSDGDGECDFQEF 73 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHh--CCCCCCcCcHHHH
Confidence 4678999998 79999 6999999999999 88888999999999999 9999999999998
No 16
>PLN02964 phosphatidylserine decarboxylase
Probab=99.44 E-value=6.2e-13 Score=94.79 Aligned_cols=92 Identities=18% Similarity=0.326 Sum_probs=80.1
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhC
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALN-LNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLG 79 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g 79 (110)
++++|..+|++++|.+ +..+++++| ..++..+..- +.++|+.+|.+++|.|+.+||..++..++
T Consensus 145 lkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~f-----------i~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 145 ACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSF-----------ARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHH-----------HHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 3578999999999986 899999999 5777776211 23459999999999999999999999998
Q ss_pred CCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 80 ERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 80 ~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
...+++++..+|..+ |.|++|.|+++||
T Consensus 210 ~~~seEEL~eaFk~f--DkDgdG~Is~dEL 237 (644)
T PLN02964 210 NLVAANKKEELFKAA--DLNGDGVVTIDEL 237 (644)
T ss_pred cCCCHHHHHHHHHHh--CCCCCCcCCHHHH
Confidence 888999999999999 9999999999986
No 17
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.35 E-value=3e-12 Score=70.53 Aligned_cols=57 Identities=16% Similarity=0.447 Sum_probs=52.4
Q ss_pred HHHHHHhhcC-CC-CCceeHHHHHHHHH---HhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 51 FLECLKLYDK-QE-DGTMLGAELHHILI---SLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~-~~-~g~i~~~e~~~~l~---~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+..+|+.||. +| +|+|+.+||+++++ .+|.++++++++++++.+ |.|++|+|+|+||
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~--D~d~dG~Idf~EF 73 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDL--DRNKDQEVNFQEY 73 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh--cCCCCCCCcHHHH
Confidence 5678999997 67 89999999999997 379999999999999999 9999999999998
No 18
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.32 E-value=5.4e-12 Score=70.34 Aligned_cols=59 Identities=19% Similarity=0.385 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcC-CC-CCceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 49 EDFLECLKLYDK-QE-DGTMLGAELHHILIS-----LGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 49 ~~~~~~F~~~D~-~~-~g~i~~~e~~~~l~~-----~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
..+..+|+.+|. +| +|.|+..|++.++.. +|..+++++++.++..+ |.+++|.|+|++|
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~--D~~~dg~I~f~eF 73 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDL--DQNRDGKVNFEEF 73 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHh--CCCCCCcCcHHHH
Confidence 457789999997 87 699999999999986 46678999999999999 9999999999998
No 19
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.32 E-value=5.6e-12 Score=70.17 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=51.1
Q ss_pred HHHHHHHhhc-CCCCC-ceeHHHHHHHHHH-h----CCCCCHHHHHHHHHhcccCCCCCCceeeccCC
Q psy10941 50 DFLECLKLYD-KQEDG-TMLGAELHHILIS-L----GERMEESEVNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 50 ~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~----g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
.++++|+.|| ++|+| +|+..||+.++.. + +...++.+++.++..+ |.|++|.|+|+||.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~el--D~n~dG~Idf~EF~ 76 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDL--DSNKDNEVDFNEFV 76 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHh--CCCCCCCCCHHHHH
Confidence 4677899999 78998 5999999999976 3 3445888999999999 99999999999983
No 20
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.31 E-value=7.9e-12 Score=69.41 Aligned_cols=59 Identities=20% Similarity=0.429 Sum_probs=52.1
Q ss_pred HHHHHHHHhhc-CCCCC-ceeHHHHHHHHHH-hCC----CCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 49 EDFLECLKLYD-KQEDG-TMLGAELHHILIS-LGE----RMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 49 ~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~g~----~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+.++++|+.|| ++++| .|+..+++.+|+. +|. ..++++++.++..+ |.+++|.|+|++|
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~--D~d~~G~I~f~eF 74 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKEL--DENGDGEVDFQEF 74 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH--CCCCCCcCcHHHH
Confidence 45778999997 99999 5999999999986 543 45889999999999 9999999999998
No 21
>KOG0037|consensus
Probab=99.30 E-value=1.8e-11 Score=76.33 Aligned_cols=86 Identities=20% Similarity=0.345 Sum_probs=73.6
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCC
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGER 81 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~ 81 (110)
+.+|..+|+|++|.|+.+||+.+|..+|+.++++-+..+ ++.+|+.++|.|..++|.+.|..+-
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~l--------------v~kyd~~~~g~i~FD~FI~ccv~L~-- 190 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLL--------------VRKYDRFGGGRIDFDDFIQCCVVLQ-- 190 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHH--------------HHHhccccCCceeHHHHHHHHHHHH--
Confidence 678999999999999999999999999999999988876 8999988899999999999987643
Q ss_pred CCHHHHHHHHHhcccCCCCCC--ceeeccC
Q psy10941 82 MEESEVNEVLQDCLDAEDEDG--FVQYAHS 109 (110)
Q Consensus 82 ~~~~e~~~~~~~~~~d~~~~g--~i~~~ef 109 (110)
-+-+.|.+. |.+..| .|+|++|
T Consensus 191 ----~lt~~Fr~~--D~~q~G~i~~~y~df 214 (221)
T KOG0037|consen 191 ----RLTEAFRRR--DTAQQGSITISYDDF 214 (221)
T ss_pred ----HHHHHHHHh--ccccceeEEEeHHHH
Confidence 455677787 777777 4667765
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.27 E-value=1.9e-11 Score=67.34 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=56.4
Q ss_pred ChhhhhhhcC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 1 AKFAFDIYDT-EGNGQIDAVDLGRVLYA-LNLNPTL-ATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 1 ~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
++.+|+.||+ +++|+|+..||+.++.. +|..++. ..+..+ ++.+|.+++|.|+.+||..++..
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~m--------------i~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEK--------------MKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHH--------------HHHhCCCCCCCCcHHHHHHHHHH
Confidence 4678999999 99999999999999998 8866666 666655 89999999999999999999886
Q ss_pred hC
Q psy10941 78 LG 79 (110)
Q Consensus 78 ~g 79 (110)
+.
T Consensus 76 l~ 77 (89)
T cd05022 76 LA 77 (89)
T ss_pred HH
Confidence 53
No 23
>KOG0027|consensus
Probab=99.26 E-value=2e-11 Score=73.53 Aligned_cols=59 Identities=29% Similarity=0.520 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.++.++|+.+|++++|+|+..++..+++.+|...+..++..++..+ |.+++|.|++++|
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~--D~dg~g~I~~~eF 66 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEI--DLDGDGTIDFEEF 66 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCCCCeEcHHHH
Confidence 4577899999999999999999999999999999999999999999 9999999999998
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.25 E-value=3.2e-11 Score=72.71 Aligned_cols=63 Identities=32% Similarity=0.484 Sum_probs=58.9
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
++++|+.||++++|+|+..+++.+++.+|..++.+++..+ ++.+|++++|.|+.++|...+..
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~l--------------l~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKL--------------LKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHH--------------HHhcCCCCCceEeHHHHHHHHhc
Confidence 4689999999999999999999999999999999999887 89999999999999999998764
No 25
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.25 E-value=1.2e-11 Score=64.43 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=50.2
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 52 LECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 52 ~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+++|+.+|++++|.|+.+|+..++..+| ++.++++.++..+ +.+++|.|+|+||
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~--d~~~~g~i~~~ef 55 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLA--DTDKDGKLDKEEF 55 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHh--cCCCCCcCCHHHH
Confidence 4679999999999999999999999987 4899999999999 9999999999987
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.24 E-value=2.1e-11 Score=61.23 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=43.9
Q ss_pred CCCceeHHHHHHHHHHhCCC-CCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 62 EDGTMLGAELHHILISLGER-MEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~-~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
++|.|+.++|+.+|..+|.+ +++++++.++..+ |.+++|.|+|+||
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~--D~~~~G~I~~~EF 47 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREF--DTDGDGYISFDEF 47 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHH--TTSSSSSEEHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhc--ccCCCCCCCHHHH
Confidence 47999999999999888999 9999999999999 9999999999998
No 27
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=4e-11 Score=67.09 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 50 DFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 50 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.+..+|+.+|++++|.|+.+++..++...| +++++++.++..+ +.+++|.|+|+||
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~--d~~~~g~I~~~eF 66 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLA--DIDNDGELDKDEF 66 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHh--cCCCCCCcCHHHH
Confidence 356789999999999999999999999976 7899999999999 9999999999998
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.22 E-value=8.1e-11 Score=64.81 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=57.0
Q ss_pred Chhhhhhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy10941 1 AKFAFDIYD-TEGNG-QIDAVDLGRVLYA-----LNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHH 73 (110)
Q Consensus 1 ~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~ 73 (110)
++++|+.|| ++++| .|+..+++.+|+. +|..+++.++..+ ++.+|++++|.|+..+|..
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~--------------i~~~D~n~dG~v~f~eF~~ 75 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKV--------------METLDSDGDGECDFQEFMA 75 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHH--------------HHHhCCCCCCcCcHHHHHH
Confidence 468999998 79999 5999999999999 8888888888876 8899999999999999998
Q ss_pred HHHHh
Q psy10941 74 ILISL 78 (110)
Q Consensus 74 ~l~~~ 78 (110)
++..+
T Consensus 76 li~~~ 80 (88)
T cd05027 76 FVAMV 80 (88)
T ss_pred HHHHH
Confidence 88754
No 29
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.19 E-value=2.2e-10 Score=59.64 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=53.8
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
++++|..+|++++|.|+..|++.++..+|. +.+.+..+ |+.+|.+++|.|+..+|..++..+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i--------------~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQI--------------WDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHH--------------HHHhcCCCCCcCCHHHHHHHHHHH
Confidence 478999999999999999999999998874 55655554 899999999999999999988754
No 30
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.19 E-value=4.4e-11 Score=65.84 Aligned_cols=59 Identities=20% Similarity=0.423 Sum_probs=52.0
Q ss_pred HHHHHHHHhhcC--CCCCceeHHHHHHHHHH-hCCCC----CHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 49 EDFLECLKLYDK--QEDGTMLGAELHHILIS-LGERM----EESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 49 ~~~~~~F~~~D~--~~~g~i~~~e~~~~l~~-~g~~~----~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+.+.++|..+|+ +++|.|+.+++..+++. +|..+ +.++++.++..+ +.+++|.|+|++|
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~--d~~~~g~I~f~eF 73 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDL--DVNKDGKVDFQEF 73 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh--ccCCCCcCcHHHH
Confidence 446788999999 89999999999999986 55444 589999999999 9999999999998
No 31
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.17 E-value=1.4e-10 Score=58.83 Aligned_cols=57 Identities=35% Similarity=0.652 Sum_probs=53.4
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+..+|..+|.+++|.|+.+++..++..++...+.+++..++..+ +.+++|.|++++|
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ef 58 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREV--DKDGDGKIDFEEF 58 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCCCeEeHHHH
Confidence 35679999999999999999999999999999999999999999 9999999999987
No 32
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.16 E-value=1.3e-10 Score=64.15 Aligned_cols=58 Identities=9% Similarity=0.229 Sum_probs=50.5
Q ss_pred HHHHHHHh-hcCCCCC-ceeHHHHHHHHHHh-----CCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 50 DFLECLKL-YDKQEDG-TMLGAELHHILISL-----GERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 50 ~~~~~F~~-~D~~~~g-~i~~~e~~~~l~~~-----g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.++.+|+. .|++|+| +|+.+||+.++... +...++.+++.+++.+ |.|+||.|+|+||
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~--D~d~DG~I~f~EF 74 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKL--DLNSDGQLDFQEF 74 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHc--CCCCCCcCcHHHH
Confidence 35678999 6788876 99999999999975 3456789999999999 9999999999998
No 33
>KOG4223|consensus
Probab=99.16 E-value=7.8e-11 Score=77.20 Aligned_cols=105 Identities=22% Similarity=0.354 Sum_probs=82.9
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHh------CCCCCcHHHHH---------------------H
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLN-PTLATIEKLG------GTKKKVYEDFL---------------------E 53 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~------~~~~~~~~~~~---------------------~ 53 (110)
++.|...|.|++|.++..||...|..--.+ +..--+..-+ +++.|++++|. .
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~ 245 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQ 245 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHH
Confidence 356889999999999999999887643311 1111111111 67778888876 3
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeecc
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAH 108 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~e 108 (110)
.+..+|++++|+++.+|+.+++..-+......++..++... |.|.||++|++|
T Consensus 246 F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~ea--D~dkD~kLs~eE 298 (325)
T KOG4223|consen 246 FFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEA--DEDKDGKLSKEE 298 (325)
T ss_pred HHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhh--ccCccccccHHH
Confidence 56777999999999999999999888888999999999999 999999999987
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.16 E-value=2e-10 Score=64.22 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=60.4
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh--
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL-- 78 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-- 78 (110)
++++|..+|++++|.|+..+++.+++..| ++.+++..+ |+.+|.+++|.|+.++|..++..+
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i--------------~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKI--------------WNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHH--------------HHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 36789999999999999999999999865 556666654 889999999999999999888753
Q ss_pred ---CCCCCHHHHHHHH
Q psy10941 79 ---GERMEESEVNEVL 91 (110)
Q Consensus 79 ---g~~~~~~e~~~~~ 91 (110)
|.++|.+--..++
T Consensus 76 ~~~g~~~~~~~~~~~~ 91 (96)
T smart00027 76 KLNGYPIPASLPPSLI 91 (96)
T ss_pred HHcCCCCCccCCHhhc
Confidence 6667665444443
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.15 E-value=2.8e-10 Score=63.19 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=54.1
Q ss_pred Chhhhhhhc-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy10941 1 AKFAFDIYD-TEGNG-QIDAVDLGRVLYA-LN----LNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHH 73 (110)
Q Consensus 1 ~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~ 73 (110)
++++|+.+| ++++| .|+..+++.+|+. +| ..++...+..+ ++.+|++++|.|+.++|..
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i--------------~~~~D~d~~G~I~f~eF~~ 76 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKI--------------MKELDENGDGEVDFQEFVV 76 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHH--------------HHHHCCCCCCcCcHHHHHH
Confidence 468999997 99999 5999999999985 54 34566666665 8999999999999999999
Q ss_pred HHHHhC
Q psy10941 74 ILISLG 79 (110)
Q Consensus 74 ~l~~~g 79 (110)
++..+.
T Consensus 77 l~~~~~ 82 (92)
T cd05025 77 LVAALT 82 (92)
T ss_pred HHHHHH
Confidence 888654
No 36
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.14 E-value=1.9e-10 Score=64.06 Aligned_cols=65 Identities=18% Similarity=0.357 Sum_probs=55.5
Q ss_pred ChhhhhhhcC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy10941 1 AKFAFDIYDT-EG-NGQIDAVDLGRVLYA-----LNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHH 73 (110)
Q Consensus 1 ~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~ 73 (110)
++++|..+|. ++ +|+|+..|++.+|+. +|..++...+..+ ++.+|.+++|.|+.++|..
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~--------------~~~~D~~~dg~I~f~eF~~ 75 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKI--------------MKDLDQNRDGKVNFEEFVS 75 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHH--------------HHHhCCCCCCcCcHHHHHH
Confidence 3678999997 86 699999999999986 4667777777665 8999999999999999999
Q ss_pred HHHHhC
Q psy10941 74 ILISLG 79 (110)
Q Consensus 74 ~l~~~g 79 (110)
++...+
T Consensus 76 l~~~~~ 81 (94)
T cd05031 76 LVAGLS 81 (94)
T ss_pred HHHHHH
Confidence 998765
No 37
>KOG0038|consensus
Probab=99.13 E-value=1.3e-10 Score=68.61 Aligned_cols=93 Identities=20% Similarity=0.346 Sum_probs=70.6
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhC-CC
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLG-ER 81 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g-~~ 81 (110)
++.+.|..++.|.++.++|-.++..+....+.. +... =||+.+|-++++.|...++...+.++- ..
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrd-lK~~------------YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e 141 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRD-LKAK------------YAFKIYDFDGDEFIGHDDLEKTLTSLTRDE 141 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHH-hhhh------------heeEEeecCCCCcccHHHHHHHHHHHhhcc
Confidence 455667778888888888887777655433332 2211 279999999999999999999999874 45
Q ss_pred CCHHHHHH----HHHhcccCCCCCCceeeccCC
Q psy10941 82 MEESEVNE----VLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 82 ~~~~e~~~----~~~~~~~d~~~~g~i~~~ef~ 110 (110)
++++|+.. +++.+ |.|+||++++.||+
T Consensus 142 Ls~eEv~~i~ekvieEA--D~DgDgkl~~~eFe 172 (189)
T KOG0038|consen 142 LSDEEVELICEKVIEEA--DLDGDGKLSFAEFE 172 (189)
T ss_pred CCHHHHHHHHHHHHHHh--cCCCCCcccHHHHH
Confidence 89988755 45556 89999999999985
No 38
>PF14658 EF-hand_9: EF-hand domain
Probab=99.13 E-value=5e-10 Score=57.81 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=56.7
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCC-CceeHHHHHHHHHH
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYALNL-NPTLATIEKLGGTKKKVYEDFLECLKLYDKQED-GTMLGAELHHILIS 77 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~-g~i~~~e~~~~l~~ 77 (110)
.+|.+||+++.|.|...++..+|++++. .|++..++.+ .+.+|+++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l--------------~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDL--------------INELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHH--------------HHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999999 8999988887 789999998 99999999999975
No 39
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.11 E-value=7.6e-10 Score=55.45 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=47.6
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 12 GNGQIDAVDLGRVLYALNLN-PTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
++|.|+..+|+.+|..+|.. ++..++..+ |..+|.+++|.|+..||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l--------------~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRL--------------FREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHH--------------HHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHH--------------HHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999889999 999988876 99999999999999999998864
No 40
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.10 E-value=1.1e-09 Score=55.53 Aligned_cols=61 Identities=26% Similarity=0.452 Sum_probs=54.4
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHIL 75 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l 75 (110)
++.+|..+|.+++|.|+..++..+++.++..++.+.+..+ |+.+|.+++|.|+..+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEM--------------IREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH--------------HHHhCCCCCCeEeHHHHHHHh
Confidence 3678999999999999999999999999988888877765 999999999999999998765
No 41
>KOG0377|consensus
Probab=99.09 E-value=1.3e-09 Score=74.56 Aligned_cols=106 Identities=14% Similarity=0.209 Sum_probs=81.1
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHh----CCCCC----------------------------cH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYAL-NLNPTLATIEKLG----GTKKK----------------------------VY 48 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~----~~~~~----------------------------~~ 48 (110)
...|+.+|+.++|+++......+++.+ |+.++=..+..-+ .++.+ ..
T Consensus 467 ~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~k 546 (631)
T KOG0377|consen 467 EDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNK 546 (631)
T ss_pred HHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhch
Confidence 467999999999999999999999864 4444333332111 11111 11
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHh----CCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHILISL----GERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
..+..+|+.+|.+++|.|+.+||+.++.-+ ...+++.++-++-..+ |.|+||.|++.||
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~m--D~NkDG~IDlNEf 609 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSM--DLNKDGKIDLNEF 609 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhh--ccCCCCcccHHHH
Confidence 223358999999999999999999998865 4568899999999999 9999999999887
No 42
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.07 E-value=9.5e-10 Score=61.17 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=51.8
Q ss_pred hhhhhhhc-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHH
Q psy10941 2 KFAFDIYD-TEGNG-QIDAVDLGRVLYA-L----NLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHI 74 (110)
Q Consensus 2 ~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~ 74 (110)
+++|+.|| ++++| +|+..||+.++.. + +...+...+..+ ++.+|.+++|.|+..||..+
T Consensus 13 ~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i--------------~~elD~n~dG~Idf~EF~~l 78 (93)
T cd05026 13 IRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKI--------------MNDLDSNKDNEVDFNEFVVL 78 (93)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHH--------------HHHhCCCCCCCCCHHHHHHH
Confidence 57899999 67888 5999999999976 2 333455555554 89999999999999999999
Q ss_pred HHHhC
Q psy10941 75 LISLG 79 (110)
Q Consensus 75 l~~~g 79 (110)
+..+.
T Consensus 79 ~~~l~ 83 (93)
T cd05026 79 VAALT 83 (93)
T ss_pred HHHHH
Confidence 98754
No 43
>KOG0044|consensus
Probab=99.07 E-value=1.1e-09 Score=68.16 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=73.7
Q ss_pred hhhhhcCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCC
Q psy10941 4 AFDIYDTE-GNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERM 82 (110)
Q Consensus 4 ~f~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~ 82 (110)
.|+-|=.. .+|.++..+|+.++..+....+...+... +|+.+|++++|.|+..||..++..+-...
T Consensus 31 ~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~-------------vF~~fD~~~dg~i~F~Efi~als~~~rGt 97 (193)
T KOG0044|consen 31 WYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAEL-------------VFRTFDKNKDGTIDFLEFICALSLTSRGT 97 (193)
T ss_pred HHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHH-------------HHHHhcccCCCCcCHHHHHHHHHHHcCCc
Confidence 34444333 38999999999999988776666666655 79999999999999999998888765556
Q ss_pred CHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 83 EESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 83 ~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.++.+.-.|..| |.|++|.|++.|+
T Consensus 98 ~eekl~w~F~ly--D~dgdG~It~~Em 122 (193)
T KOG0044|consen 98 LEEKLKWAFRLY--DLDGDGYITKEEM 122 (193)
T ss_pred HHHHhhhhheee--cCCCCceEcHHHH
Confidence 777788889999 9999999999874
No 44
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.04 E-value=2.1e-09 Score=59.16 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=54.2
Q ss_pred hhhhhhcC-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 3 FAFDIYDT-EG-NGQIDAVDLGRVLY---ALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 3 ~~f~~~D~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
.+|..||. ++ +|+|+..||+.++. .+|..++.+++..+ ++.+|.+++|.|+.+||..++..
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m--------------~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKL--------------MEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHH--------------HHHhcCCCCCCCcHHHHHHHHHH
Confidence 57899997 56 78999999999997 36888888888876 89999999999999999988876
Q ss_pred h
Q psy10941 78 L 78 (110)
Q Consensus 78 ~ 78 (110)
+
T Consensus 80 l 80 (88)
T cd05029 80 L 80 (88)
T ss_pred H
Confidence 4
No 45
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=7.5e-10 Score=63.82 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=47.7
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
..+..+|..+|.+++|.|+.+|+..++ ++ .....+..++..+ |.|+||.||++||
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~~e~~~~~f~~~~--D~n~Dg~IS~~Ef 102 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--LD--PNEHCIKPFFESC--DLDKDGSISLDEW 102 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--chHHHHHHHHHHH--CCCCCCCCCHHHH
Confidence 445678999999999999999999877 22 3567788999999 9999999999997
No 46
>PTZ00183 centrin; Provisional
Probab=99.01 E-value=1.3e-09 Score=65.55 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=53.5
Q ss_pred CCCHHHHHHHhCC--CCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhcccCCCCCCceeec
Q psy10941 31 NPTLATIEKLGGT--KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL-GERMEESEVNEVLQDCLDAEDEDGFVQYA 107 (110)
Q Consensus 31 ~~~~~~~~~~~~~--~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ 107 (110)
.++..++..++.. ...+...+..+|+.+|.+++|.|+..+|..++... ....+.+.++.+|+.+ |.+++|.|+.+
T Consensus 33 ~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~--D~~~~G~i~~~ 110 (158)
T PTZ00183 33 TIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLF--DDDKTGKISLK 110 (158)
T ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHh--CCCCCCcCcHH
Confidence 4666666655532 23456667778888888888888888887776643 3445667778888887 78888888877
Q ss_pred cC
Q psy10941 108 HS 109 (110)
Q Consensus 108 ef 109 (110)
||
T Consensus 111 e~ 112 (158)
T PTZ00183 111 NL 112 (158)
T ss_pred HH
Confidence 65
No 47
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.00 E-value=7.3e-10 Score=61.02 Aligned_cols=58 Identities=12% Similarity=0.382 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCC--CCCceeHHHHHHHHH-HhCCCCC----HHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 50 DFLECLKLYDKQ--EDGTMLGAELHHILI-SLGERME----ESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 50 ~~~~~F~~~D~~--~~g~i~~~e~~~~l~-~~g~~~~----~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.+...|+.++.. ++|.|+.+|++.++. .+|..++ +++++.++..+ |.+++|.|+|++|
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~--D~d~dG~I~f~eF 73 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDL--DTNQDGQLSFEEF 73 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHc--CCCCCCcCcHHHH
Confidence 356689999866 489999999999997 5666666 99999999999 9999999999998
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.00 E-value=2.1e-09 Score=59.11 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=53.0
Q ss_pred ChhhhhhhcC--CCCCcccHHHHHHHHHH-cCCCC----CHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy10941 1 AKFAFDIYDT--EGNGQIDAVDLGRVLYA-LNLNP----TLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHH 73 (110)
Q Consensus 1 ~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~ 73 (110)
++++|..+|+ +++|.|+..++..+++. +|..+ +...+..+ ++.+|.+++|.|+.++|..
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i--------------~~~~d~~~~g~I~f~eF~~ 75 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI--------------MKDLDVNKDGKVDFQEFLV 75 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH--------------HHHhccCCCCcCcHHHHHH
Confidence 3578999999 89999999999999986 55433 35555554 8999999999999999999
Q ss_pred HHHHh
Q psy10941 74 ILISL 78 (110)
Q Consensus 74 ~l~~~ 78 (110)
++...
T Consensus 76 ~~~~~ 80 (88)
T cd00213 76 LIGKL 80 (88)
T ss_pred HHHHH
Confidence 98865
No 49
>PTZ00184 calmodulin; Provisional
Probab=98.97 E-value=2.2e-09 Score=63.83 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=49.2
Q ss_pred CCCHHHHHHHhC--CCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhC-CCCCHHHHHHHHHhcccCCCCCCceeec
Q psy10941 31 NPTLATIEKLGG--TKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLG-ERMEESEVNEVLQDCLDAEDEDGFVQYA 107 (110)
Q Consensus 31 ~~~~~~~~~~~~--~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g-~~~~~~e~~~~~~~~~~d~~~~g~i~~~ 107 (110)
.++..++..++. ....+.+.+..+|+.+|.+++|.|+.++|..++.... .....+.+..+|..+ |.+++|.|+.+
T Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~--D~~~~g~i~~~ 104 (149)
T PTZ00184 27 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVF--DRDGNGFISAA 104 (149)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhh--CCCCCCeEeHH
Confidence 356666655542 2234455667777777777777777777777766542 234455667777777 77777777776
Q ss_pred cC
Q psy10941 108 HS 109 (110)
Q Consensus 108 ef 109 (110)
+|
T Consensus 105 e~ 106 (149)
T PTZ00184 105 EL 106 (149)
T ss_pred HH
Confidence 64
No 50
>PLN02964 phosphatidylserine decarboxylase
Probab=98.95 E-value=5.6e-09 Score=74.98 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=66.1
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH----
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS---- 77 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~---- 77 (110)
+++|..+|.+++|.|+..||..++..++...+.+++. .+|+.+|++++|.|+.+||..++..
T Consensus 182 ~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~--------------eaFk~fDkDgdG~Is~dEL~~vL~~~~~~ 247 (644)
T PLN02964 182 RRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE--------------ELFKAADLNGDGVVTIDELAALLALQQEQ 247 (644)
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH--------------HHHHHhCCCCCCcCCHHHHHHHHHhcccC
Confidence 5789999999999999999999999877655555544 4699999999999999999999998
Q ss_pred ---------hCCCCCH-HHHHHHHHhc
Q psy10941 78 ---------LGERMEE-SEVNEVLQDC 94 (110)
Q Consensus 78 ---------~g~~~~~-~e~~~~~~~~ 94 (110)
+|.+++. +++..+++..
T Consensus 248 ~~~~~~cp~cg~~l~~~~~~~~iiH~~ 274 (644)
T PLN02964 248 EPIINNCPVCGEALGVSDKLNAMIHMT 274 (644)
T ss_pred cchhhhchhhcCcccchhhHHHHHHHH
Confidence 6767776 6777777554
No 51
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.94 E-value=3.9e-09 Score=60.87 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=47.3
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILI 76 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~ 76 (110)
+..+|..+|.|++|.|+..|+..+. ..+....+.. .|..+|.+++|.||.+|++..+.
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~--------------f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKP--------------FFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHH--------------HHHHHCCCCCCCCCHHHHHHHHh
Confidence 3578999999999999999999876 2333344443 59999999999999999999883
No 52
>KOG4223|consensus
Probab=98.90 E-value=2.8e-09 Score=70.07 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=72.9
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHh-----CCCCCcHHHHH-----------------------
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNL-NPTLATIEKLG-----GTKKKVYEDFL----------------------- 52 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~----------------------- 52 (110)
..++..+|.+++|.|+..|+..++..... .+-......+. .++.++|++++
T Consensus 80 ~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~ 159 (325)
T KOG4223|consen 80 GKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYK 159 (325)
T ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHH
Confidence 34566778778888888888777654311 11111111111 33344444433
Q ss_pred -------HHHHhhcCCCCCceeHHHHHHHHHHhC-CCCCHHHHHHHHHhcccCCCCCCceeeccCC
Q psy10941 53 -------ECLKLYDKQEDGTMLGAELHHILISLG-ERMEESEVNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 53 -------~~F~~~D~~~~g~i~~~e~~~~l~~~g-~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
+-|+.-|.+++|.++++||...+..-. .++.+-.+++-+... |.|+||+|+++||.
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~--Dkn~DG~I~~eEfi 223 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDI--DKNGDGKISLEEFI 223 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhc--ccCCCCceeHHHHH
Confidence 579999999999999999998887543 346666778888888 99999999999984
No 53
>PF14658 EF-hand_9: EF-hand domain
Probab=98.89 E-value=5.9e-09 Score=53.86 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=50.0
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCC-CCCHHHHHHHHHhcccCCCCC-CceeeccC
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGE-RMEESEVNEVLQDCLDAEDED-GFVQYAHS 109 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~-~~~~~e~~~~~~~~~~d~~~~-g~i~~~ef 109 (110)
+|..||+++.|.|...++..+|+.++. ..++.+++.+.+.+ |.++. |.|+++.|
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~el--DP~g~~~~v~~d~F 58 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINEL--DPEGRDGSVNFDTF 58 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHh--CCCCCCceEeHHHH
Confidence 699999999999999999999999987 78899999999999 88776 99999887
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.84 E-value=9.2e-09 Score=45.00 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 50 DFLECLKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 50 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
++.++|+.+|++++|+|+.+||..+|+.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 45678999999999999999999999864
No 55
>KOG0034|consensus
Probab=98.81 E-value=3e-08 Score=61.56 Aligned_cols=67 Identities=24% Similarity=0.396 Sum_probs=55.7
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCC-CCC--HHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNL-NPT--LATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
+-+|+.||.+++|.|+..++.+++..+-. ..+ .+++..+ ..+.|..+|.+++|+|+.+|+++++...
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i----------~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI----------VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH----------HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 34799999999999999999999998633 344 5666666 3457999999999999999999999764
No 56
>KOG0031|consensus
Probab=98.75 E-value=3e-08 Score=59.09 Aligned_cols=54 Identities=24% Similarity=0.541 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeecc
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAH 108 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~e 108 (110)
++|++||..+|.+++|.|++++++.++.++|...++++++.+++.. .|-|+|.-
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea------~gPINft~ 85 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA------PGPINFTV 85 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC------CCCeeHHH
Confidence 5689999999999999999999999999999999999999999887 45666643
No 57
>KOG0028|consensus
Probab=98.74 E-value=2.5e-08 Score=59.74 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=47.4
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 50 DFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 50 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
++..+|..||++++|+|+..||..+++++|.....+++..++..+ +.++.|.|+|++|
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~--dk~~~g~i~fe~f 91 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADV--DKEGSGKITFEDF 91 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhh--hhccCceechHHH
Confidence 456778888888888888888888888888888888888888888 7888888888776
No 58
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.73 E-value=3.2e-08 Score=43.95 Aligned_cols=30 Identities=43% Similarity=0.588 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHH-HhC
Q psy10941 50 DFLECLKLYDKQEDGTMLGAELHHILI-SLG 79 (110)
Q Consensus 50 ~~~~~F~~~D~~~~g~i~~~e~~~~l~-~~g 79 (110)
++..+|+.+|++++|.|+.+||..++. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 366789999999999999999999999 665
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.71 E-value=1.3e-08 Score=44.49 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=25.5
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHc
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYAL 28 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 28 (110)
++++|+.+|+|++|+|+..||..++++|
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 4689999999999999999999999864
No 60
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.69 E-value=7.7e-08 Score=52.95 Aligned_cols=56 Identities=13% Similarity=0.294 Sum_probs=47.9
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHH-h----CCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILIS-L----GERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~-~----g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
++.+|..|. .+.+++++.||+.++.. + +.+-.+..++.+++.+ |.|+||.|+|.||
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~L--D~n~Dg~vdF~EF 70 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDL--DDCRDGKVGFQSF 70 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHh--CCCCCCcCcHHHH
Confidence 567899998 55679999999999975 2 3445788999999999 9999999999998
No 61
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.66 E-value=1.9e-07 Score=51.47 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=48.7
Q ss_pred hhhhhh-hcCCCCC-cccHHHHHHHHHHcC-----CCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHH
Q psy10941 2 KFAFDI-YDTEGNG-QIDAVDLGRVLYALN-----LNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHI 74 (110)
Q Consensus 2 ~~~f~~-~D~~~~g-~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~ 74 (110)
..+|.. .|++++| +|+..||+.++.... ...++.. +.++++.+|.+++|.|+.+||..+
T Consensus 12 ~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~--------------~~~ll~~~D~d~DG~I~f~EF~~l 77 (89)
T cd05023 12 IAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGV--------------LDRMMKKLDLNSDGQLDFQEFLNL 77 (89)
T ss_pred HHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHH--------------HHHHHHHcCCCCCCcCcHHHHHHH
Confidence 467887 6676765 999999999998642 2233344 444599999999999999999998
Q ss_pred HHHhC
Q psy10941 75 LISLG 79 (110)
Q Consensus 75 l~~~g 79 (110)
+..+.
T Consensus 78 ~~~l~ 82 (89)
T cd05023 78 IGGLA 82 (89)
T ss_pred HHHHH
Confidence 87653
No 62
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.66 E-value=2.3e-07 Score=45.45 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 15 QIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
+++..|++.+|+.+++.++......+ |+..|++++|++..+||.+.+..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~L--------------Fq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQL--------------FQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHH--------------HHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHH--------------HHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999999999999998887 999999999999999999988754
No 63
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.62 E-value=3.7e-08 Score=43.75 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=25.5
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHH-HcC
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLY-ALN 29 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 29 (110)
++++|..+|++++|+|+..||+.+|+ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 46899999999999999999999999 676
No 64
>KOG0041|consensus
Probab=98.62 E-value=6.4e-08 Score=60.07 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+...|+.+|.+.+|+|+..|++.+|..+|.+-|-=-++.+++.. |.|.+|+|||.||
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeV--ded~dgklSfref 157 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEV--DEDFDGKLSFREF 157 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHh--hcccccchhHHHH
Confidence 34689999999999999999999999999877777789999999 9999999999886
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.60 E-value=2e-07 Score=51.31 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=49.3
Q ss_pred hhhhhhcCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy10941 3 FAFDIYDTE--GNGQIDAVDLGRVLY-ALNLNPT----LATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHIL 75 (110)
Q Consensus 3 ~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l 75 (110)
..|..++.. .+|.|+..||+.++. .+|..++ ...+.. +|+.+|.+++|.|+.++|..++
T Consensus 12 ~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~--------------i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 12 NVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDK--------------IFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHH--------------HHHHcCCCCCCcCcHHHHHHHH
Confidence 568888865 479999999999997 4454444 444444 5999999999999999999988
Q ss_pred HHh
Q psy10941 76 ISL 78 (110)
Q Consensus 76 ~~~ 78 (110)
..+
T Consensus 78 ~~~ 80 (88)
T cd05030 78 IKV 80 (88)
T ss_pred HHH
Confidence 865
No 66
>KOG0036|consensus
Probab=98.59 E-value=3.2e-07 Score=62.42 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=62.1
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCC
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGER 81 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~ 81 (110)
.++|+.+|.+++|.|..+|++..|+.+|..++.++...+ |+..|+++++.|+.+|++..+.-.
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~--------------~e~~d~~g~~~I~~~e~rd~~ll~--- 147 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKF--------------FEHMDKDGKATIDLEEWRDHLLLY--- 147 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHH--------------HHHhccCCCeeeccHHHHhhhhcC---
Confidence 457888888888999999999999888888888877775 999999999999999999888643
Q ss_pred CCHHHHHHHHHhc
Q psy10941 82 MEESEVNEVLQDC 94 (110)
Q Consensus 82 ~~~~e~~~~~~~~ 94 (110)
|...++.++..+
T Consensus 148 -p~s~i~di~~~W 159 (463)
T KOG0036|consen 148 -PESDLEDIYDFW 159 (463)
T ss_pred -ChhHHHHHHHhh
Confidence 366677776655
No 67
>KOG0030|consensus
Probab=98.56 E-value=1.2e-07 Score=55.65 Aligned_cols=60 Identities=25% Similarity=0.439 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCC--CCCceeeccC
Q psy10941 48 YEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAED--EDGFVQYAHS 109 (110)
Q Consensus 48 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~--~~g~i~~~ef 109 (110)
.++++++|..||..++|+|+..+...+|+++|.+.|+.++.+.+..+ ..+ +-.+|+|++|
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~--~~~~~~~~rl~FE~f 71 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQP--KRREMNVKRLDFEEF 71 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCc--ccchhhhhhhhHHHH
Confidence 36788999999999999999999999999999999999999999888 444 4478888876
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.45 E-value=1e-06 Score=49.88 Aligned_cols=56 Identities=14% Similarity=0.364 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
..|..+|...++ ++|.|+..+.+.++...+ ++.+.+..++... |.+++|.++++||
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~La--D~~~dG~L~~~EF 65 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLA--DIDNDGKLDFEEF 65 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH---SSSSSEEEHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhh--cCCCCCcCCHHHH
Confidence 456778999985 689999999999999888 8999999999999 9999999999998
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.32 E-value=1.4e-06 Score=36.72 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHH
Q psy10941 52 LECLKLYDKQEDGTMLGAELHHIL 75 (110)
Q Consensus 52 ~~~F~~~D~~~~g~i~~~e~~~~l 75 (110)
.++|+.+|.+++|.|+.+|+..++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 457999999999999999998764
No 70
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.31 E-value=5.5e-07 Score=37.93 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=22.4
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVL 25 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l 25 (110)
+++.|+.+|.|++|.|+..|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 71
>KOG0040|consensus
Probab=98.29 E-value=2.6e-06 Score=65.74 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=59.5
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh--CC
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL--GE 80 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~--g~ 80 (110)
-+|..||++++|+++..+|+.+|+++|+.+|..+- .-+.++|.+.....||+.+|+|+..++...|..- -.
T Consensus 2257 ~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe-------~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeN 2329 (2399)
T KOG0040|consen 2257 MMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEE-------GEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETEN 2329 (2399)
T ss_pred HHHHHhchhhccCCcHHHHHHHHHhcCCCCccccc-------CCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccc
Confidence 36899999999999999999999999998754321 0122334455677778888888877777766542 22
Q ss_pred CCCHHHHHHHHHhc
Q psy10941 81 RMEESEVNEVLQDC 94 (110)
Q Consensus 81 ~~~~~e~~~~~~~~ 94 (110)
.++.++++..|..+
T Consensus 2330 I~s~~eIE~AfraL 2343 (2399)
T KOG0040|consen 2330 ILSSEEIEDAFRAL 2343 (2399)
T ss_pred ccchHHHHHHHHHh
Confidence 34555666666666
No 72
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=98.20 E-value=3.5e-05 Score=47.07 Aligned_cols=104 Identities=19% Similarity=0.186 Sum_probs=74.3
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh---------------------------------------C
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG---------------------------------------G 42 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~---------------------------------------~ 42 (110)
++-...+|+|++|.|...|..+.++++|+.+-...+..++ .
T Consensus 10 QqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~ 89 (174)
T PF05042_consen 10 QQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDT 89 (174)
T ss_pred hhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccccc
Confidence 4445678999999999999999999999877665544332 1
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCC-------CCCHHHHHHHHHhcccCCCCCCceeecc
Q psy10941 43 TKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGE-------RMEESEVNEVLQDCLDAEDEDGFVQYAH 108 (110)
Q Consensus 43 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~-------~~~~~e~~~~~~~~~~d~~~~g~i~~~e 108 (110)
+++...+.|.++|..+++.+.+.++..|+.+++...-. -.+.-|-..++..+ .+.+|.++.+.
T Consensus 90 eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~---~d~dG~l~Ke~ 159 (174)
T PF05042_consen 90 EGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA---KDKDGFLSKED 159 (174)
T ss_pred CCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH---cCcCCcEeHHH
Confidence 11225677889999999999999999999999986321 12233344444444 57788887653
No 73
>KOG0377|consensus
Probab=98.19 E-value=7e-06 Score=56.75 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=50.5
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcC----CCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALN----LNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
+.+|+.+|.+++|.|+..||+++++-++ ..++..++.+ .-+.+|-+++|+|+..||-++++-
T Consensus 550 etiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~--------------la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 550 ETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILE--------------LARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHH--------------HHHhhccCCCCcccHHHHHHHHhh
Confidence 5689999999999999999999998654 3344444444 478889999999999999888774
Q ss_pred h
Q psy10941 78 L 78 (110)
Q Consensus 78 ~ 78 (110)
.
T Consensus 616 v 616 (631)
T KOG0377|consen 616 V 616 (631)
T ss_pred h
Confidence 3
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.15 E-value=2.9e-06 Score=58.33 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccCC
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
..+..+|+.+|.+++|.|+.+|+.. ++.+|+.+ |.|+||.|+++||.
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~--D~d~DG~Is~eEf~ 380 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDAL--DLNHDGKITPEEMR 380 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHh--CCCCCCCCcHHHHH
Confidence 4456799999999999999999942 57899999 99999999999983
No 75
>KOG2643|consensus
Probab=98.15 E-value=3.7e-06 Score=57.78 Aligned_cols=104 Identities=15% Similarity=0.270 Sum_probs=74.9
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHH---HHHHh----C-CCCCcHHHHHHHHHhhc------------CCCC
Q psy10941 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLAT---IEKLG----G-TKKKVYEDFLECLKLYD------------KQED 63 (110)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~---~~~~~----~-~~~~~~~~~~~~F~~~D------------~~~~ 63 (110)
-|..+|+..+|.|+..+|..+|-.......... +.++. . ...|+.++|...|+-.. ..-.
T Consensus 323 EF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag 402 (489)
T KOG2643|consen 323 EFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFLNNLNDFDIALRFYHMAG 402 (489)
T ss_pred HHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcC
Confidence 377888888899999999888765543232222 22221 2 44567777764333221 1345
Q ss_pred CceeHHHHHHHHHH-hCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 64 GTMLGAELHHILIS-LGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 64 g~i~~~e~~~~l~~-~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+.|+..+++++... .|..+++..++.+|..| |.|+||.+|++||
T Consensus 403 ~~i~~~~f~raa~~vtGveLSdhVvdvvF~IF--D~N~Dg~LS~~EF 447 (489)
T KOG2643|consen 403 ASIDEKTFQRAAKVVTGVELSDHVVDVVFTIF--DENNDGTLSHKEF 447 (489)
T ss_pred CCCCHHHHHHHHHHhcCcccccceeeeEEEEE--ccCCCCcccHHHH
Confidence 67999999999885 58889999999999999 9999999999998
No 76
>KOG4666|consensus
Probab=98.09 E-value=3.9e-06 Score=55.80 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=71.8
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH-hCC
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS-LGE 80 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~g~ 80 (110)
+..|.+||.+.+|.++..+.-..+..+--++....+.++ +|+.|+.+.+|.+...++.-+|+. +|
T Consensus 262 ~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~-------------afk~f~v~eDg~~ge~~ls~ilq~~lg- 327 (412)
T KOG4666|consen 262 APTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQY-------------AFKRFSVAEDGISGEHILSLILQVVLG- 327 (412)
T ss_pred hhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHH-------------HHHhcccccccccchHHHHHHHHHhcC-
Confidence 567999999999999999988888776666666666666 799999999999999999988885 45
Q ss_pred CCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 81 RMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 81 ~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+..-.+-.+|... +...+|+|+|.+|
T Consensus 328 -v~~l~v~~lf~~i--~q~d~~ki~~~~f 353 (412)
T KOG4666|consen 328 -VEVLRVPVLFPSI--EQKDDPKIYASNF 353 (412)
T ss_pred -cceeeccccchhh--hcccCcceeHHHH
Confidence 3333445577777 7777889998886
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.07 E-value=5.5e-06 Score=40.61 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=36.0
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccCC
Q psy10941 65 TMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 65 ~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
+++..|+..+|+.+...+++.-+..+|+.+ |.+++|++.-+||+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~--D~s~~g~Le~~Ef~ 44 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQEC--DKSQSGRLEGEEFE 44 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH---SSSSSEBEHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHh--cccCCCCccHHHHH
Confidence 478999999999999999999999999999 99999999988873
No 78
>KOG1029|consensus
Probab=98.05 E-value=1.1e-05 Score=58.92 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=50.2
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccCC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
++..|..+|+..+|+++...-+.+|..-+ ++...+..+.-.- |.|+||+++-+||+
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~Ls--Dvd~DGkL~~dEfi 252 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLS--DVDGDGKLSADEFI 252 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeee--ccCCCCcccHHHHH
Confidence 44689999999999999999999998777 8888899998887 99999999999984
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.03 E-value=1.3e-05 Score=55.14 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=42.6
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
+.+|..+|.+++|.|+..|+.. . ..+|..+|.+++|.|+.+||...+...
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~~-------------~--------------~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWLG-------------S--------------DAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHHH-------------H--------------HHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5789999999999999999832 1 225999999999999999999998753
No 80
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.97 E-value=0.00013 Score=40.25 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=49.1
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhC
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLG 79 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g 79 (110)
..|..|.. +.++++..||+.++.. ++-.++.. ..+...+.++++.+|.+++|.|+..||..++..+.
T Consensus 12 ~~FhkYaG-~~~tLsk~Elk~Ll~~--------Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 12 LTFHKFAG-EKNYLNRDDLQKLMEK--------EFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHcC-CCCcCCHHHHHHHHHH--------HhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 46777874 4579999999999974 23333332 22444556679999999999999999998887653
No 81
>KOG2643|consensus
Probab=97.95 E-value=8e-05 Score=51.43 Aligned_cols=103 Identities=19% Similarity=0.373 Sum_probs=68.1
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHHc------CC----------C----CCHHHHHHHh---CCCCCcHHHHHH-------
Q psy10941 4 AFDIYDTEGNGQIDAVDLGRVLYAL------NL----------N----PTLATIEKLG---GTKKKVYEDFLE------- 53 (110)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~------~~----------~----~~~~~~~~~~---~~~~~~~~~~~~------- 53 (110)
+|..||.|+||-|+.+||..+..-+ |. + .+...+..++ .....+.++|.+
T Consensus 238 AFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~ 317 (489)
T KOG2643|consen 238 AFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENLQE 317 (489)
T ss_pred eeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHHHH
Confidence 6889999999999999999887532 21 0 1111111111 344556666652
Q ss_pred -----HHHhhcCCCCCceeHHHHHHHHHHhC-CCCCHH--HHHHHHHhcccCCCCCCceeeccC
Q psy10941 54 -----CLKLYDKQEDGTMLGAELHHILISLG-ERMEES--EVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 54 -----~F~~~D~~~~g~i~~~e~~~~l~~~g-~~~~~~--e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.|..+|+..+|.|+..+|..++.... .+.... .++.+-+++ ..+ +..||++||
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf--~~~-~~gISl~Ef 378 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKF--KDD-GKGISLQEF 378 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhc--cCC-CCCcCHHHH
Confidence 69999999999999999999988753 322222 245566666 333 667888886
No 82
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.92 E-value=1.9e-06 Score=49.54 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+.--|..+|.+++|.|+..|+..+...+ ..++.=+..++..+ |.|+||.||..|+
T Consensus 56 ~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~C--D~n~d~~Is~~EW 110 (113)
T PF10591_consen 56 VHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSC--DVNKDGKISLDEW 110 (113)
T ss_dssp HHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH---TT-SSSEEHHHH
T ss_pred hhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHc--CCCCCCCCCHHHH
Confidence 4456999999999999999999887655 23444578899999 9999999999885
No 83
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.88 E-value=0.00016 Score=41.03 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=47.2
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
..+|+..++ .+|.|+..+.+.++...| ++...+.++ |...|.+++|+++..||.-+|.-
T Consensus 13 ~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~I--------------W~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 13 DQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQI--------------WNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHH--------------HHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHH--------------HhhhcCCCCCcCCHHHHHHHHHH
Confidence 457888875 579999999999988655 555666654 99999999999999999987764
No 84
>KOG4065|consensus
Probab=97.87 E-value=7.6e-05 Score=42.71 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=45.4
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHh------CC---C-CCHHHHHHHHHhcc--cCCCCCCceeeccC
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISL------GE---R-MEESEVNEVLQDCL--DAEDEDGFVQYAHS 109 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~------g~---~-~~~~e~~~~~~~~~--~d~~~~g~i~~~ef 109 (110)
-.|+..|-+++|.|+.-|+..++... |. + .++.|++.++...+ +|.|+||.|+|-||
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 36899999999999999999988754 22 2 55778877777663 46789999999997
No 85
>KOG0038|consensus
Probab=97.82 E-value=8.9e-05 Score=44.23 Aligned_cols=68 Identities=26% Similarity=0.424 Sum_probs=56.7
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCC
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYALNL-NPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGE 80 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~ 80 (110)
-+|..+|-|+++.|...++.+.+.++.. .++.+++..+ ..++...-|.+|+|+++..+|.+++.....
T Consensus 112 YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i----------~ekvieEAD~DgDgkl~~~eFe~~i~raPD 180 (189)
T KOG0038|consen 112 YAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI----------CEKVIEEADLDGDGKLSFAEFEHVILRAPD 180 (189)
T ss_pred heeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH----------HHHHHHHhcCCCCCcccHHHHHHHHHhCcc
Confidence 4688999999999999999999998754 4777777776 344677789999999999999999887553
No 86
>KOG0041|consensus
Probab=97.79 E-value=0.00012 Score=45.90 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=42.9
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh------CCCCCcHHHHHHHHHhh
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG------GTKKKVYEDFLECLKLY 58 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~F~~~ 58 (110)
..+|..||.+.+|+|+..|++..|..+|.+-+.--+..++ .+++++|.+|.-+|+.-
T Consensus 102 ~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 102 ESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 4679999999999999999999999999887776666664 33444555555555443
No 87
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.78 E-value=5.4e-06 Score=47.67 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=37.3
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHH 73 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~ 73 (110)
...|..+|.|++|.++..|++.+...+ .+.+.=+. ..|+..|.+++|.||..|+..
T Consensus 57 ~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~--------------~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 57 HWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCAR--------------PFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHH--------------HHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHH--------------HHHHHcCCCCCCCCCHHHHcc
Confidence 356899999999999999998876644 22222223 348999999999999999863
No 88
>KOG0751|consensus
Probab=97.67 E-value=0.0002 Score=50.38 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=72.5
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCC------CCCHHHHHHHhCCC---CCcHHHH------------HHHHHhhcC
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNL------NPTLATIEKLGGTK---KKVYEDF------------LECLKLYDK 60 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~------------~~~F~~~D~ 60 (110)
..+|+.||+..+|.+|..++..++..... ..+.+-+...++.. .+++.+| ..+|+..|+
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~ 190 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDK 190 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35799999999999999999999987643 23344444443222 2233333 268999999
Q ss_pred CCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 61 QEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 61 ~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.++|.|+.-++...|...-.++...-++..+-..- ..+...++|+-.|
T Consensus 191 ~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~va-gg~~~H~vSf~yf 238 (694)
T KOG0751|consen 191 AKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVA-GGNDSHQVSFSYF 238 (694)
T ss_pred cCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhc-CCCCccccchHHH
Confidence 99999999999999998765544445555444430 3344556776554
No 89
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.62 E-value=0.00011 Score=30.67 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.8
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
+.++|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456899999999999999999998875
No 90
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.62 E-value=8.8e-05 Score=31.01 Aligned_cols=27 Identities=37% Similarity=0.660 Sum_probs=24.1
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYA 27 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 27 (110)
++.+|..+|.+++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 467899999999999999999998875
No 91
>KOG0046|consensus
Probab=97.60 E-value=0.00023 Score=50.27 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=48.9
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHhCCC---CCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 52 LECLKLYDKQEDGTMLGAELHHILISLGER---MEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 52 ~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~---~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.+.|...| +++|+|+..++..++...+.. ...+++++++... +.|.+|+|+|++|
T Consensus 22 ~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~--~~~~~g~v~fe~f 79 (627)
T KOG0046|consen 22 KEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEV--GVDADGRVEFEEF 79 (627)
T ss_pred HHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhcc--CCCcCCccCHHHH
Confidence 45799999 999999999999999987643 4588999999999 8999999999998
No 92
>KOG2562|consensus
Probab=97.59 E-value=0.0002 Score=49.80 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=55.4
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHH--HHcCCCCCHHHHHHHhCCCCCcHHHHHHH---HHhhcCCCCCceeHHHHHHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVL--YALNLNPTLATIEKLGGTKKKVYEDFLEC---LKLYDKQEDGTMLGAELHHILI 76 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---F~~~D~~~~g~i~~~e~~~~l~ 76 (110)
+++|-.+++..+|+|+..++.+.. ..+-.-..++.+.+.. ...+.+.+..+ |..+|++++|.|+++++....-
T Consensus 228 ~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~--~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 228 QRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVT--RYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred hhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhh--hheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 466777888899999999986542 1111101111111110 11245555555 5666777777777777765543
Q ss_pred HhCCCCCHHHHHHHHHhcc--cCCCCCCceeeccC
Q psy10941 77 SLGERMEESEVNEVLQDCL--DAEDEDGFVQYAHS 109 (110)
Q Consensus 77 ~~g~~~~~~e~~~~~~~~~--~d~~~~g~i~~~ef 109 (110)
.. ++..-++.+|.+.- --...+|+++|++|
T Consensus 306 ~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdF 337 (493)
T KOG2562|consen 306 HT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDF 337 (493)
T ss_pred cc---hhhHHHHHHHhhccccceeeecCcccHHHH
Confidence 32 34555666666220 02345666666665
No 93
>KOG4251|consensus
Probab=97.48 E-value=0.0002 Score=46.29 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=67.2
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHH-HhhcCCCCCceeHHHHHHHHHHhCC
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECL-KLYDKQEDGTMLGAELHHILISLGE 80 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F-~~~D~~~~g~i~~~e~~~~l~~~g~ 80 (110)
+++...+|++++..++..+|... .+...+-++...-.....+.-.+.| ..+|.+++|.++..|+..++.....
T Consensus 239 keivrdlDqdgDkqlSvpeFisl------pvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~ 312 (362)
T KOG4251|consen 239 KEIVRDLDQDGDKQLSVPEFISL------PVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNF 312 (362)
T ss_pred HHHHHHhccCCCeeecchhhhcC------CCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhh
Confidence 45677889999999999998533 2222111111100011112222344 4569999999999999999887777
Q ss_pred CCCHHHHHHHHHhcccCCCCCCceeecc
Q psy10941 81 RMEESEVNEVLQDCLDAEDEDGFVQYAH 108 (110)
Q Consensus 81 ~~~~~e~~~~~~~~~~d~~~~g~i~~~e 108 (110)
.++..++..++..- +.+++..++.++
T Consensus 313 ~~alne~~~~ma~~--d~n~~~~Ls~ee 338 (362)
T KOG4251|consen 313 RLALNEVNDIMALT--DANNDEKLSLEE 338 (362)
T ss_pred hhhHHHHHHHHhhh--ccCCCcccCHHH
Confidence 78888888888887 888998888765
No 94
>KOG0040|consensus
Probab=97.41 E-value=0.00025 Score=55.51 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCC-------HHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 48 YEDFLECLKLYDKQEDGTMLGAELHHILISLGERME-------ESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 48 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~-------~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
..+|.-+|+.||++++|.++..+|+..|+++|..+| +.++++++... |++.+|.|+..+|
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~v--DP~r~G~Vsl~dY 2318 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLV--DPNRDGYVSLQDY 2318 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhc--CCCCcCcccHHHH
Confidence 445667999999999999999999999999997663 33789999999 9999999998775
No 95
>KOG4251|consensus
Probab=97.30 E-value=0.00018 Score=46.57 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=48.4
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHH-hCCC--CCHHHHHHHHHhcccCCCCCCceeeccCC
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILIS-LGER--MEESEVNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~g~~--~~~~e~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
+.+.+..+|+.-|.+.+|+|+..|+.++++. ...+ -+.++-+..|... |+|+||.|+++||+
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraV--DpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAV--DPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeee--CCCCCCceehhhhh
Confidence 3445667899999999999999999987764 3322 3445566778788 99999999999984
No 96
>KOG2562|consensus
Probab=97.08 E-value=0.00099 Score=46.50 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=59.4
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHH----hhcCCCCCceeHHHHHHHHHHhCC
Q psy10941 5 FDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLK----LYDKQEDGTMLGAELHHILISLGE 80 (110)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~----~~D~~~~g~i~~~e~~~~l~~~g~ 80 (110)
|-.+|++.+|.|+.+++...-. ..++..-+.. +|. .+-...+|+|+.++|.+.+.++-.
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdR--------------IFs~v~r~~~~~~eGrmdykdFv~FilA~e~ 346 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGD---HTLTERIVDR--------------IFSQVPRGFTVKVEGRMDYKDFVDFILAEED 346 (493)
T ss_pred HhhhccccccccCHHHHHHHhc---cchhhHHHHH--------------HHhhccccceeeecCcccHHHHHHHHHHhcc
Confidence 6678999999999999876543 2233333333 355 344456777888888888877776
Q ss_pred CCCHHHHHHHHHhcccCCCCCCceeecc
Q psy10941 81 RMEESEVNEVLQDCLDAEDEDGFVQYAH 108 (110)
Q Consensus 81 ~~~~~e~~~~~~~~~~d~~~~g~i~~~e 108 (110)
+-++.-++-.|+.+ |.+++|.|+..|
T Consensus 347 k~t~~SleYwFrcl--Dld~~G~Lt~~e 372 (493)
T KOG2562|consen 347 KDTPASLEYWFRCL--DLDGDGILTLNE 372 (493)
T ss_pred CCCccchhhheeee--eccCCCcccHHH
Confidence 66777777888777 788888777554
No 97
>KOG0169|consensus
Probab=96.63 E-value=0.0062 Score=44.96 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=64.4
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh------CCCCCcHHHH-------------HHHHHhhcCCC
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG------GTKKKVYEDF-------------LECLKLYDKQE 62 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~-------------~~~F~~~D~~~ 62 (110)
..+|+..|++++|.++..+...+++.+...+....+..++ +.+++.+..+ ...|..+-. +
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s~-~ 217 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYSH-G 217 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHhC-C
Confidence 4578999999999999999999999998888887776664 2333322222 234555543 3
Q ss_pred CCceeHHHHHHHHHHhC--CCCCHHHHHHHHHhc
Q psy10941 63 DGTMLGAELHHILISLG--ERMEESEVNEVLQDC 94 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g--~~~~~~e~~~~~~~~ 94 (110)
.+.++..++...+.... ...+.+.++.+++.+
T Consensus 218 ~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~ 251 (746)
T KOG0169|consen 218 KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERY 251 (746)
T ss_pred CCccCHHHHHHHHHHhcccccccHHHHHHHHHHh
Confidence 67777777777777653 346777777777776
No 98
>KOG0751|consensus
Probab=96.59 E-value=0.0063 Score=43.22 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=76.6
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh---C----CCCCcH-------------HHHHHHHHhh-cC
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG---G----TKKKVY-------------EDFLECLKLY-DK 60 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~---~----~~~~~~-------------~~~~~~F~~~-D~ 60 (110)
+++|...|+.++|.||.-+++..+..+-..+..+.+...+ . ...+++ +-.++.+..+ +.
T Consensus 182 ~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afnslL~~melirk~y~s~~~~ 261 (694)
T KOG0751|consen 182 EQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFNSLLNNMELIRKIYSSLAGT 261 (694)
T ss_pred HHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 4678999999999999999999988776666666666554 1 112233 2333566655 44
Q ss_pred CCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccCC
Q psy10941 61 QEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 61 ~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef~ 110 (110)
.++-.++++++..+-...+- .++-+++.+|+... ..+..|++++++++
T Consensus 262 ~~d~~~~kdq~~~~a~~~~q-~t~~~idilf~la~-~~~~~~~ltl~Di~ 309 (694)
T KOG0751|consen 262 RKDVEVTKDQFSLAAQTSKQ-VTPLEIDILFQLAD-LYHPMGRLTLADIE 309 (694)
T ss_pred ccchhhhHHHHHHHHHHhhc-cCchhhhhhhhhhh-cccccccccHHHHH
Confidence 56778999999988887764 57778999998872 34567788887753
No 99
>KOG0046|consensus
Probab=96.48 E-value=0.012 Score=42.06 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=37.4
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCC---CHHHHHHHh------CCCCCcHHHHHHHHHh
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNP---TLATIEKLG------GTKKKVYEDFLECLKL 57 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~F~~ 57 (110)
+++.|...| +++|+|+..++..++...+... ..+++..++ .++++++++|..+|..
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 357799999 8999999999999999877644 244444443 2334455555554433
No 100
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.41 E-value=0.0056 Score=33.00 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHh-CC-CCCHHHHHHHHHhcccCC--CCCCceeeccC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISL-GE-RMEESEVNEVLQDCLDAE--DEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~-g~-~~~~~e~~~~~~~~~~d~--~~~g~i~~~ef 109 (110)
+..+|+.+.. +.+.|+.++|...|..- +. .++.+.+..++.++.++. ...+.++++.|
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF 63 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGF 63 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHH
Confidence 4567999965 89999999999999864 54 479999999999983111 14678887776
No 101
>KOG1029|consensus
Probab=96.03 E-value=0.015 Score=43.40 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=48.8
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
+.+|+.+|+..+|+++...-+.+|-..+ ++..++-++ |..-|.|++|+++.+||.-+|..
T Consensus 198 ~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~I--------------W~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 198 RQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHI--------------WTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred HHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhh--------------eeeeccCCCCcccHHHHHHHHHH
Confidence 4689999999999999999999986544 555555554 88889999999999999866543
No 102
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.51 E-value=0.011 Score=31.04 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=37.0
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCC-----CCceeeccC
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDE-----DGFVQYAHS 109 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~-----~g~i~~~ef 109 (110)
+-+++..+|+.+ .++.++|+..+|++.|. +++++-+.+.+-+-.+. .|..+|..|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f 63 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESF 63 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHH
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHH
Confidence 346678899999 68889999999999863 33457777776111111 266777655
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.43 E-value=0.057 Score=28.99 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=45.8
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCC--CCHHHHHHHhCCCCCcHHHHHHHHHhhcCC----CCCceeHHHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLN--PTLATIEKLGGTKKKVYEDFLECLKLYDKQ----EDGTMLGAELHHI 74 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~----~~g~i~~~e~~~~ 74 (110)
|+.+|..+-. +.+.|+..+|...|..-... .+..++..+ +..+.++ ..+.++...|...
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~l--------------i~~~~~~~~~~~~~~lt~~gF~~f 66 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKEL--------------IEKFEPDERNRQKGQLTLEGFTRF 66 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHH--------------HHHHHHHHHHHCTTEEEHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHH--------------HHHHccchhhcccCCcCHHHHHHH
Confidence 3678888865 68899999999999865332 355665555 5555333 4689999999999
Q ss_pred HHHh
Q psy10941 75 LISL 78 (110)
Q Consensus 75 l~~~ 78 (110)
|.+-
T Consensus 67 L~S~ 70 (83)
T PF09279_consen 67 LFSD 70 (83)
T ss_dssp HHST
T ss_pred HCCC
Confidence 9864
No 104
>KOG2243|consensus
Probab=95.28 E-value=0.019 Score=45.75 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=46.1
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
-|+.+|++|.|.|++.+|.++|..-. +-++.|++-++... ..|.+...+|++|
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllsca--e~dend~~~y~df 4114 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCA--EADENDMFDYEDF 4114 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhh--ccCccccccHHHH
Confidence 58889999999999999999997543 36888999999888 7888899999887
No 105
>KOG4065|consensus
Probab=95.11 E-value=0.16 Score=29.35 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=44.9
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHHc------CC----CCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy10941 4 AFDIYDTEGNGQIDAVDLGRVLYAL------NL----NPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHH 73 (110)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~ 73 (110)
.|...|-+++|.++.-|+.+++.-. |. -+++.++..++ -.+.+--|.+++|.|+-.||.+
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~i----------D~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLI----------DAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHH----------HHHhcccccCCCceeeHHHHHh
Confidence 4778899999999999999998754 22 13445555552 2357777999999999998865
Q ss_pred H
Q psy10941 74 I 74 (110)
Q Consensus 74 ~ 74 (110)
.
T Consensus 142 ~ 142 (144)
T KOG4065|consen 142 R 142 (144)
T ss_pred h
Confidence 4
No 106
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.87 E-value=0.16 Score=30.79 Aligned_cols=54 Identities=7% Similarity=0.239 Sum_probs=41.4
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhC---CCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLG---ERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g---~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+|..|-+.+...|+...|..+|+..+ .+++...++.+|..+ -..+..+|+|++|
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kv--k~k~~~~I~f~~F 63 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKV--KAKGARKITFEQF 63 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHH--T-SS-SEEEHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHh--hcCCCcccCHHHH
Confidence 45555566777899999999999864 469999999999998 4555667999988
No 107
>KOG3555|consensus
Probab=94.87 E-value=0.077 Score=36.26 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=42.7
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhC
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLG 79 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g 79 (110)
..+|..+|.|.+|.++..|++.+-.- -.+.= ++..|...|..++|.|+..|+..-+..-+
T Consensus 253 gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~C--------------ikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 253 GWMFNKLDTNYDLLLDQSELRAIELD----KNEAC--------------IKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhccccccccccCHHHhhhhhcc----CchhH--------------HHHHHhhhcccccCccccchhhhhhccCC
Confidence 45788888888888888888766431 11221 23348888888899999888887777655
No 108
>KOG1955|consensus
Probab=94.19 E-value=0.075 Score=38.05 Aligned_cols=55 Identities=11% Similarity=0.246 Sum_probs=47.0
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+.+-|+.+-+|-.|.|+...-+..+..-. ++-.|+..+++.. |.+.||.+++.||
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLs--D~d~DGALtL~EF 287 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELS--DVDRDGALTLSEF 287 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhc--ccCccccccHHHH
Confidence 55789999999999999988888877544 7778899999988 9999999999987
No 109
>KOG1707|consensus
Probab=94.09 E-value=0.2 Score=36.64 Aligned_cols=29 Identities=17% Similarity=0.497 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLG 79 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g 79 (110)
+...|..+|.+++|-++..|+..+....+
T Consensus 317 l~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 317 LVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 34789999999999999999999998775
No 110
>KOG4578|consensus
Probab=94.09 E-value=0.022 Score=38.56 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=40.8
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHhCCC-CCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISLGER-MEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~g~~-~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
..|..+|+++++.|.+.|++..=.-+-.. -+..=...+++.+ |.|+|..||++|+
T Consensus 337 w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yC--DlNkDKkISl~Ew 392 (421)
T KOG4578|consen 337 WYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYC--DLNKDKKISLDEW 392 (421)
T ss_pred eeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhc--ccCCCceecHHHH
Confidence 46999999999999999966443322211 2344567788887 9999999999885
No 111
>KOG4578|consensus
Probab=93.76 E-value=0.077 Score=36.03 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=43.1
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
..|..+|+|+++.|...|++-.=+.+-. .....+. -++.|+..|.+++.+|+..|++.-|...
T Consensus 337 w~F~qLdkN~nn~i~rrEwKpFK~~l~k---~s~~rkC----------~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 337 WYFNQLDKNSNNDIERREWKPFKRVLLK---KSKPRKC----------SRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeecccccCccchhhcchHHHHHHh---hccHHHH----------hhhcchhcccCCCceecHHHHhhhhccc
Confidence 3588899999999999886443322111 1111121 2346899999999999999999887643
No 112
>KOG3555|consensus
Probab=93.60 E-value=0.11 Score=35.62 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=46.4
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
-..++-..|..+|.+-+|.++..|++.+... -.+.=++.+|..+ |...||.||-.|+
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsC--D~~kDg~iS~~EW 304 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSC--DTYKDGSISTNEW 304 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhh--cccccCccccchh
Confidence 4455667899999999999999999987653 2445578899999 8888999998874
No 113
>KOG0042|consensus
Probab=93.50 E-value=0.087 Score=38.29 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
..++.-|..+|.++.|.++..+..++|...+...++..++.++... +.+.+|.+...||
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea--~~~~~g~v~l~e~ 651 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEA--DENLNGFVELREF 651 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHhhcceeeHHHH
Confidence 3344679999999999999999999999998889999999999999 8888999988775
No 114
>KOG3866|consensus
Probab=93.44 E-value=0.12 Score=34.94 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=39.7
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHh-----CCCCCHHHH-----------HHHHHhcccCCCCCCceeeccC
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISL-----GERMEESEV-----------NEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~-----g~~~~~~e~-----------~~~~~~~~~d~~~~g~i~~~ef 109 (110)
.|...|.+++|.++-.|+..++..- ..+=.+..+ +.+++.. |+|.|..|+.+||
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~v--DtNqDRlvtleEF 318 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQV--DTNQDRLVTLEEF 318 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhc--ccchhhhhhHHHH
Confidence 5889999999999999988887642 111122122 4567778 9999999999987
No 115
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=92.78 E-value=0.98 Score=25.20 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=54.3
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10941 15 QIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~ 92 (110)
.|...+.+.+.+.+| +++.++..+-.+.+.+.+.....+..+-......=+...+.++|..++.....+.++..+-
T Consensus 16 ~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~~~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 16 EVPFDSWNRLMRQLG--LSENEIDVAKANERVTREQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred HCCHHHHHHHHHHcC--CCHHHHHHHHHHCCCCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 477788999999888 6777777776555555666666666664333334567899999999998888888776543
No 116
>KOG0042|consensus
Probab=92.59 E-value=0.34 Score=35.42 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=52.4
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
..|..+|.++.|.++..++.++|+..+...+...++.. .+..|..-+|.+...++.++++.+
T Consensus 597 ~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~--------------l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 597 TRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEE--------------LQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHH--------------HHHHHHhhcceeeHHHHHHHHHHH
Confidence 46889999999999999999999998888888887776 455566668999999999998875
No 117
>KOG2871|consensus
Probab=92.36 E-value=0.39 Score=33.31 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=36.9
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~ 92 (110)
..++.+++|+.+|+.++|+|+.+-++.+|......+++.+.-.+..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~ 352 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMR 352 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhc
Confidence 5677899999999999999999999999998885555554444433
No 118
>KOG1955|consensus
Probab=92.01 E-value=0.43 Score=34.41 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=29.3
Q ss_pred hCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 41 GGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 41 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
+...++..+++.-+|+..|.+++|.++..||+.++.-
T Consensus 257 FtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 257 FTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hhhccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3344455566667799999999999999999988764
No 119
>KOG0998|consensus
Probab=91.53 E-value=0.1 Score=39.83 Aligned_cols=59 Identities=15% Similarity=0.297 Sum_probs=52.3
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+...+.++|...|++.+|.|+..+....++..| ++...+..+.... +..+.|.+++++|
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~--d~~n~~~ls~~ef 339 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLA--DTQNTGTLSKDEF 339 (847)
T ss_pred HHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhc--chhccCccccccc
Confidence 345566789999999999999999999999877 8888899999998 9999999999876
No 120
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.91 E-value=2.4 Score=25.74 Aligned_cols=63 Identities=8% Similarity=0.195 Sum_probs=42.6
Q ss_pred hhhhhhh---cCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy10941 2 KFAFDIY---DTEGNGQIDAVDLGRVLYALNL---NPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHIL 75 (110)
Q Consensus 2 ~~~f~~~---D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l 75 (110)
+++|..| -+.+...++...|.++++..++ .++...+..+ |..+-..+...|+.++|..+|
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDii--------------F~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDII--------------FSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHH--------------HHHHT-SS-SEEEHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHH--------------HHHhhcCCCcccCHHHHHHHH
Confidence 5666666 2344677999999999998765 3455555554 777655666678888888888
Q ss_pred HHh
Q psy10941 76 ISL 78 (110)
Q Consensus 76 ~~~ 78 (110)
..+
T Consensus 68 ~~l 70 (154)
T PF05517_consen 68 AEL 70 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=90.68 E-value=1.2 Score=27.64 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=35.5
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILI 76 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~ 76 (110)
+++|..+++...+.+|..|+..+++.--.....--. ..+.-|+.-.|... ++++|.+.++.++.++-
T Consensus 99 e~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW-------~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 99 EEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGW-------FAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchh-------hhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 345555555555556666666555531100000000 00233444555554 67899999999998764
No 122
>KOG4347|consensus
Probab=90.57 E-value=0.66 Score=34.34 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=41.0
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceee
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~ 106 (110)
+.|+.+|++++|.|+..++...+..+...-..+.+..+++.+ +.+++ ..+-
T Consensus 559 rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh--~~p~~-~~d~ 609 (671)
T KOG4347|consen 559 RLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLH--DPPAD-ELDR 609 (671)
T ss_pred HHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhc--cCCcc-cccc
Confidence 689999999999999999999998876555566777788888 66666 4443
No 123
>KOG0035|consensus
Probab=90.02 E-value=0.58 Score=35.93 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=44.7
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCH-HH-HHH---HHHhcccCCCCCCceeeccCC
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEE-SE-VNE---VLQDCLDAEDEDGFVQYAHSE 110 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~-~e-~~~---~~~~~~~d~~~~g~i~~~ef~ 110 (110)
.+|+..|.-+++...|.++.+++...++.+|...-. ++ +++ ++..- +.+..|.|++.+|+
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~--n~l~~~qv~~~e~~ 811 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKK--NPLIQGQVQLLEFE 811 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhcc--CcccccceeHHHHH
Confidence 456678999999999999999999999999987653 22 333 33333 44556889998874
No 124
>KOG4666|consensus
Probab=89.02 E-value=0.56 Score=32.05 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISL-GERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~-g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+...|..||.+++|.++..+....+.-+ |...++.-++.-|+.| +.+.||.+.-++|
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f--~v~eDg~~ge~~l 318 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRF--SVAEDGISGEHIL 318 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhc--ccccccccchHHH
Confidence 3468999999999999999988887765 5668899999999999 9999998876543
No 125
>KOG4347|consensus
Probab=88.44 E-value=0.45 Score=35.15 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=42.4
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAEL 71 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~ 71 (110)
+.+|+.+|.+.+|.++.+++...|..+-..-..+.+.. .|+.+|+++. ....++.
T Consensus 558 ~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l--------------~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 558 ERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKL--------------LYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHH--------------HHhhccCCcc-ccccccc
Confidence 57899999999999999999999887644333333333 4888888888 7777777
No 126
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=87.12 E-value=3.7 Score=22.98 Aligned_cols=78 Identities=9% Similarity=0.102 Sum_probs=53.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHhCCC-CCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10941 14 GQIDAVDLGRVLYALNLNPTLATIEKLGGTK-KKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92 (110)
Q Consensus 14 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~ 92 (110)
..|...+.+++.+.+| +++..+..+.... ....+.....++.+-......=+...+..+|..++.....+.++.++.
T Consensus 16 ~~~~~~~wK~faR~lg--lse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 16 DVMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQDTAEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHcCHHHHHHHHHHcC--CCHHHHHHHHHcCCCChHHHHHHHHHHHHHHhCCCchHHHHHHHHHHccchhHHHHHHHHHH
Confidence 3467788999999888 6777777776444 334566666666664333223345888899999998878888877765
Q ss_pred h
Q psy10941 93 D 93 (110)
Q Consensus 93 ~ 93 (110)
.
T Consensus 94 ~ 94 (97)
T cd08316 94 A 94 (97)
T ss_pred h
Confidence 4
No 127
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=85.40 E-value=2.5 Score=23.08 Aligned_cols=31 Identities=6% Similarity=0.074 Sum_probs=27.7
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 64 GTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 64 g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..||..||.++....+.++++++++.+++.+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~l 43 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANIL 43 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999999998877
No 128
>KOG0169|consensus
Probab=84.93 E-value=0.87 Score=34.29 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=44.3
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
..|+..|++++|.++..+...++..+...+...-+..+++.. +...++++...+|
T Consensus 140 ~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~--~~~~~~k~~~~~~ 194 (746)
T KOG0169|consen 140 SIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKES--DNSQTGKLEEEEF 194 (746)
T ss_pred HHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHH--HhhccceehHHHH
Confidence 578888999999999999999988888778888888888877 6666777766554
No 129
>KOG2871|consensus
Probab=84.23 E-value=1.4 Score=30.73 Aligned_cols=40 Identities=30% Similarity=0.287 Sum_probs=32.8
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 40 (110)
+++.|+.+|+..+|+|+..-++.++..++...++.....+
T Consensus 311 ~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l 350 (449)
T KOG2871|consen 311 LRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVML 350 (449)
T ss_pred HHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHH
Confidence 4688999999999999999999999999866666554433
No 130
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=83.75 E-value=5.1 Score=21.59 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=41.7
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCC-ceeHHHHHHHHHHhCCC
Q psy10941 15 QIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDG-TMLGAELHHILISLGER 81 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g-~i~~~e~~~~l~~~g~~ 81 (110)
.|...+.+.+.+.+| +++.++..+-...+...+.....++.+-..... .=+...+..+|..++..
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~~~~~~~Eq~yqmL~~W~~~~g~~~At~~~L~~aLr~~~l~ 73 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVELDHRRCRDAQYQMLKVWKERGPRPYATLQHLLSVLRDMELV 73 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHcCcH
Confidence 477889999999988 566777766544444445555555555333332 55667777788777644
No 131
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=83.63 E-value=3.4 Score=19.49 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=21.7
Q ss_pred HHHHHHHhhcC--CCCCceeHHHHHHHHHH
Q psy10941 50 DFLECLKLYDK--QEDGTMLGAELHHILIS 77 (110)
Q Consensus 50 ~~~~~F~~~D~--~~~g~i~~~e~~~~l~~ 77 (110)
.+..+|..|.. ....++++.|++.++..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 35678999963 34678999999999985
No 132
>KOG4004|consensus
Probab=83.05 E-value=0.37 Score=30.63 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=35.5
Q ss_pred HHHhhcCC-CCCceeHHHHHHHHHHhCCCCCHHH-HHHHHHhcccCCCCCCceeeccC
Q psy10941 54 CLKLYDKQ-EDGTMLGAELHHILISLGERMEESE-VNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 54 ~F~~~D~~-~~g~i~~~e~~~~l~~~g~~~~~~e-~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
-|-.+|.. .+|++|..|+.-+-.. .++.+. +..+|+-+ |.|+||.|+.+|+
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap---~ipme~c~~~f~e~c--d~~nd~~ial~ew 244 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAP---LIPMEHCTTRFFETC--DLDNDKYIALDEW 244 (259)
T ss_pred eeccccCCCccccccccccccccCC---cccHHhhchhhhhcc--cCCCCCceeHHHh
Confidence 36667755 6899999887654322 133333 45577777 9999999999885
No 133
>PLN02952 phosphoinositide phospholipase C
Probab=82.72 E-value=17 Score=27.30 Aligned_cols=68 Identities=10% Similarity=0.184 Sum_probs=47.1
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh-CC-CCCHHHH
Q psy10941 12 GNGQIDAVDLGRVLYALNL--NPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL-GE-RMEESEV 87 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-g~-~~~~~e~ 87 (110)
+.|.++..+|....+.+.. ..+.+++.. +|..+.. +.+.|+.++|...|... +. ..+.+.+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~--------------lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~ 77 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKD--------------VFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEA 77 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHH--------------HHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHH
Confidence 4689999999877775532 224555555 4888864 44689999999999875 33 3677777
Q ss_pred HHHHHhc
Q psy10941 88 NEVLQDC 94 (110)
Q Consensus 88 ~~~~~~~ 94 (110)
+.++..+
T Consensus 78 ~~i~~~~ 84 (599)
T PLN02952 78 QRIVEEV 84 (599)
T ss_pred HHHHHHH
Confidence 7776654
No 134
>KOG2303|consensus
Probab=82.65 E-value=17 Score=26.80 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=51.3
Q ss_pred hhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhC-----------CCC----------CcHHHHHHHHHhhcCCCCCc
Q psy10941 7 IYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGG-----------TKK----------KVYEDFLECLKLYDKQEDGT 65 (110)
Q Consensus 7 ~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~-----------~~~----------~~~~~~~~~F~~~D~~~~g~ 65 (110)
..|.|.=|.|+..+++..|+-.......+-++.++. ++. .+++++--.=+.-...+-|.
T Consensus 533 SADINPIGgISK~DLr~Fl~~a~~~~~lp~L~~il~a~pTAELePl~~g~~~QtDE~dmGmTY~ELsv~GrlRK~~~cGP 612 (706)
T KOG2303|consen 533 SADINPIGGISKTDLRRFLQYAKEKFGLPALQSILDAPPTAELEPLTDGDYSQTDEADMGMTYAELSVFGRLRKVSKCGP 612 (706)
T ss_pred ccccCCccCccHHHHHHHHHHHHHhcCchHHHHHhcCCCcccccccccCcccccchhhhCccHHHHHHhHhhccccccCc
Confidence 357788899999999999874333333333333321 111 14454433223323345554
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 66 MLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 66 i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
. +=|.+++...|.++++.++.+=+++|
T Consensus 613 y--sMF~kLl~~W~~klsp~qvaEKVk~F 639 (706)
T KOG2303|consen 613 Y--SMFCKLLHQWGDKLSPRQVAEKVKRF 639 (706)
T ss_pred H--HHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 4 55888999999999998876654444
No 135
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=82.01 E-value=7.3 Score=22.47 Aligned_cols=44 Identities=7% Similarity=0.206 Sum_probs=35.9
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
++-+|-.....|+..+|.+++..++...|..+.+..+..+++.+
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 34456666667787899999999999999988888888888877
No 136
>KOG1707|consensus
Probab=81.84 E-value=3.9 Score=30.29 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=27.4
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCC
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNP 32 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 32 (110)
..+|..+|.+++|.++..|+..++...+..+
T Consensus 318 ~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p 348 (625)
T KOG1707|consen 318 VDVFEKFDRDNDGALSPEELKDLFSTAPGSP 348 (625)
T ss_pred HHHHHhccCCCCCCcCHHHHHHHhhhCCCCC
Confidence 5679999999999999999999999876555
No 137
>KOG0035|consensus
Probab=80.99 E-value=8.6 Score=29.98 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=29.8
Q ss_pred ChhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCH
Q psy10941 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTL 34 (110)
Q Consensus 1 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~ 34 (110)
+++.|+.+++...|..+..++..+|-.+|.....
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ 782 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEE 782 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccch
Confidence 3677889999889999999999999999988775
No 138
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=80.07 E-value=7.1 Score=20.80 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhh-cCCCCCceeHHHHHHHHHHhCCCCCHH
Q psy10941 15 QIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLY-DKQEDGTMLGAELHHILISLGERMEES 85 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~-D~~~~g~i~~~e~~~~l~~~g~~~~~~ 85 (110)
.|+..+.+.+.+.+| +++.++..+-...+...+......... .+.|. .=+...+.++|..+|...+.+
T Consensus 8 ~v~~~~Wk~laR~LG--ls~~~I~~ie~~~~~~~eq~~~mL~~W~~k~G~-~At~~~L~~aL~~~~~~~~Ae 76 (79)
T cd08784 8 EVPFDQHKRFFRKLG--LSDNEIKVAELDNPQHRDRVYELLRIWRNKEGR-KATLNTLIKALKDLDQRRTAE 76 (79)
T ss_pred HCCHHHHHHHHHHcC--CCHHHHHHHHHcCCchHHHHHHHHHHHHhccCc-CcHHHHHHHHHHHcccHhHHH
Confidence 467788889999888 556666665433322445555555444 33343 346777888888777554443
No 139
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=79.23 E-value=3.2 Score=16.37 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=12.2
Q ss_pred cCCCCCcccHHHHHHH
Q psy10941 9 DTEGNGQIDAVDLGRV 24 (110)
Q Consensus 9 D~~~~g~i~~~e~~~~ 24 (110)
|.|++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5788999999887654
No 140
>KOG1265|consensus
Probab=79.16 E-value=25 Score=27.86 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHh----------CCCCCHHHHHHHHHhcccCCC--CCCceeeccC
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHILISL----------GERMEESEVNEVLQDCLDAED--EDGFVQYAHS 109 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----------g~~~~~~e~~~~~~~~~~d~~--~~g~i~~~ef 109 (110)
.++.++|..+.-++.-+++.+++..++..- -..+.+..+..+++.|.++.+ .+|.++-+-|
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf 293 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGF 293 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhh
Confidence 344578999988888899999999998752 235788999999999953332 3566665443
No 141
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=79.00 E-value=8.5 Score=21.05 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=42.8
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhC---CCCCHHHHHHH
Q psy10941 14 GQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLG---ERMEESEVNEV 90 (110)
Q Consensus 14 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g---~~~~~~e~~~~ 90 (110)
..+|..||.+.-+..|.+++.++...+. ..+-.+.-.....++-..++..+. .+-+..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~--------------~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~L 78 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIA--------------NILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNEL 78 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHH--------------HHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4589999999999999999999988763 333223333444455555555442 33345556666
Q ss_pred HHhc
Q psy10941 91 LQDC 94 (110)
Q Consensus 91 ~~~~ 94 (110)
|..|
T Consensus 79 f~qf 82 (85)
T PF11116_consen 79 FEQF 82 (85)
T ss_pred HHHH
Confidence 6665
No 142
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=78.95 E-value=9.9 Score=21.79 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=34.5
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 52 LECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 52 ~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+-+|-.....|+..+|.+++..++...|..+.+..+..+++.+
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L 46 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISEL 46 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 4456666667777899999999999999888888888888776
No 143
>KOG3442|consensus
Probab=78.64 E-value=8.3 Score=22.64 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=31.0
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCcee
Q psy10941 11 EGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTML 67 (110)
Q Consensus 11 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~ 67 (110)
++.|.||..|-.++|. +..+++.+.+..- |..+|+.-|+.+.|+..
T Consensus 51 ~~~~~iTlqEa~qILn-V~~~ln~eei~k~----------yehLFevNdkskGGSFY 96 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILN-VKEPLNREEIEKR----------YEHLFEVNDKSKGGSFY 96 (132)
T ss_pred cccccccHHHHhhHhC-CCCCCCHHHHHHH----------HHHHHhccCcccCccee
Confidence 3456788888887776 3335666666543 45678998999777654
No 144
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=78.10 E-value=7.2 Score=20.13 Aligned_cols=32 Identities=6% Similarity=0.360 Sum_probs=28.3
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 63 DGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+-.|+.+-++.++..+|-+.|+..++.++...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44689999999999999999999999998776
No 145
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=77.10 E-value=7.8 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=25.8
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 64 GTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 64 g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
-.+|.+|+..++..++..++.+++-.++.+.
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 3578899999999998888988888877765
No 146
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=76.71 E-value=3.2 Score=21.79 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=32.8
Q ss_pred HHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q psy10941 22 GRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL-GERMEESEVNEVLQD 93 (110)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-g~~~~~~e~~~~~~~ 93 (110)
..++..+...++......+ ...|+.=+.+.|++++|.+.++.+ | ++.+...+..
T Consensus 12 ~~L~~~l~~~l~~~~~~~l--------------~~~Y~~~k~~kIsR~~fvr~lR~IVG----D~lL~s~I~~ 66 (70)
T PF12174_consen 12 PMLFSALSKHLPPSKMDLL--------------QKHYEEFKKKKISREEFVRKLRQIVG----DQLLRSAIKS 66 (70)
T ss_pred HHHHHHHHHHCCHHHHHHH--------------HHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3444444445566655554 445555567899999999999875 5 3344444443
No 147
>KOG3449|consensus
Probab=75.15 E-value=13 Score=21.30 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=37.0
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
++.+|-++...++-..+..++..++.+.|..+.++.+..++..+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 34566777778888899999999999999989999999998887
No 148
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=74.59 E-value=25 Score=24.26 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=33.8
Q ss_pred cCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH
Q psy10941 28 LNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVL 91 (110)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~ 91 (110)
.|+.--..++...+..+.++.++-.+..+.+| |......+..++..+| +|.+|...++
T Consensus 285 fG~~~~~~~~s~~IR~G~itReeal~~v~~~d----~~~~~~~~~~~~~~lg--~t~~ef~~~~ 342 (343)
T TIGR03573 285 FGFGRATDHASIDIRSGRITREEAIELVKEYD----GEFPKEDLEYFLKYLG--ISEEEFWKTV 342 (343)
T ss_pred cCCCcCchHHHHHHHcCCCCHHHHHHHHHHhc----ccccHHHHHHHHHHhC--CCHHHHHHHh
Confidence 45555555556666666666666666555543 3344456666666666 5666665543
No 149
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=74.20 E-value=9.2 Score=19.46 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q psy10941 15 QIDAVDLGRVLYALNLNPTLATIEKL 40 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 40 (110)
.|+..+|..+|+...-+++..++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47889999999998888888888764
No 150
>KOG3449|consensus
Probab=73.17 E-value=11 Score=21.59 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=31.8
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh
Q psy10941 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG 41 (110)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 41 (110)
+|-++....+...+..+++++|.++|.....+.+..++
T Consensus 6 AYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~vi 43 (112)
T KOG3449|consen 6 AYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVL 43 (112)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHH
Confidence 45566666667789999999999999999999998875
No 151
>PRK00523 hypothetical protein; Provisional
Probab=73.08 E-value=11 Score=19.94 Aligned_cols=32 Identities=13% Similarity=0.399 Sum_probs=27.8
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 63 DGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+=.|+.+-++.++..+|-+.|+..++.++...
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44688899999999999999999999988775
No 152
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=72.59 E-value=8.4 Score=23.73 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=39.8
Q ss_pred CHHHHHHHhCCCCC-cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 33 TLATIEKLGGTKKK-VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
....+-..+..+++ +..++..|++.+-.++...++..+|...+ ..|..+|+++++..+..+
T Consensus 68 ~r~~iv~~I~~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 68 HRPFIVKYIVDGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp THHHHHHHHHTTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 34444455555555 67888889998877777789999999887 468889999999888776
No 153
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=70.44 E-value=6.1 Score=21.18 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=19.6
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..|+||.+++..++.... ++++.++.++..+
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L 48 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTL 48 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHH
Confidence 467788888888887443 7788888888776
No 154
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=69.71 E-value=19 Score=20.78 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=31.3
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
-+|-..-..++-.+|.+++..++...|..+.+.-+..++..+
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L 46 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 344455556677788888888888888877777777777766
No 155
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.56 E-value=20 Score=21.03 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=19.2
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
..+..||+.++|.|+.-.++-++..+
T Consensus 101 ~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 101 WLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 46888999999999999998887654
No 156
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=68.73 E-value=18 Score=20.02 Aligned_cols=63 Identities=19% Similarity=0.390 Sum_probs=35.5
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHc-------CCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYAL-------NLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHI 74 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~ 74 (110)
+.+|+.+ .+++|.++...+...|+.+ |..++.-. .....+..|+.- ..+-.|+.++|..+
T Consensus 6 RylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~----------~e~sv~sCF~~~--~~~~~I~~~~Fl~w 72 (90)
T PF09069_consen 6 RYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY----------IEPSVRSCFQQV--QLSPKITENQFLDW 72 (90)
T ss_dssp HHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT------------HHHHHHHHHHT--TT-S-B-HHHHHHH
T ss_pred HHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC----------cHHHHHHHhccc--CCCCccCHHHHHHH
Confidence 5578877 5779999999999888743 21111111 222244456664 35667999999999
Q ss_pred HHH
Q psy10941 75 LIS 77 (110)
Q Consensus 75 l~~ 77 (110)
|+.
T Consensus 73 l~~ 75 (90)
T PF09069_consen 73 LMS 75 (90)
T ss_dssp HHT
T ss_pred HHh
Confidence 875
No 157
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.26 E-value=16 Score=19.23 Aligned_cols=32 Identities=13% Similarity=0.380 Sum_probs=27.8
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 63 DGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+=.|+.+-++.++..+|-+.|+..+++++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44688999999999999999999999988775
No 158
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=68.26 E-value=5.4 Score=25.11 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=33.4
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHH
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVN 88 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~ 88 (110)
..+.|+++|..||+.+--.++.+++..+|...|+.-....++
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~ 94 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIK 94 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHH
Confidence 457788999999999999999999999999877543443433
No 159
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=67.53 E-value=22 Score=20.63 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH
Q psy10941 15 QIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVL 91 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~ 91 (110)
.|=.+-++.+|+..|..-+.+.+..+. ....|+.+.+...+..++ ++++.-+.+.
T Consensus 53 eVlaEpIQTvmRr~g~~~pYE~LK~lT--------------------Rg~~it~~~l~~fI~~L~--ip~~~k~~L~ 107 (115)
T PF08328_consen 53 EVLAEPIQTVMRRYGIPNPYEKLKELT--------------------RGKKITKEDLREFIESLD--IPEEAKARLL 107 (115)
T ss_dssp GGGHHHHHHHHHHTT-SSHHHHHHHHH--------------------TTS---HHHHHHHHHTSS--S-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHH--------------------cCCCCCHHHHHHHHHhCC--CCHHHHHHHH
Confidence 344555677777777666666666552 223677888888777776 5555444443
No 160
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=66.84 E-value=9.8 Score=20.44 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHH
Q psy10941 69 AELHHILISLGERMEESEVNEVLQ 92 (110)
Q Consensus 69 ~e~~~~l~~~g~~~~~~e~~~~~~ 92 (110)
-|+-.+|+.+|.+++++|..-+-.
T Consensus 20 vEIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 20 VEILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356677888999999999765543
No 161
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=66.24 E-value=17 Score=19.92 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=20.7
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 66 MLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 66 i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
|+.+++.++..-....+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46677777777777778888877666654
No 162
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=65.69 E-value=17 Score=18.74 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=26.6
Q ss_pred HhhcCCCCCceeHHHHHHHHHHh----------CCCCCHHHHHHHH
Q psy10941 56 KLYDKQEDGTMLGAELHHILISL----------GERMEESEVNEVL 91 (110)
Q Consensus 56 ~~~D~~~~g~i~~~e~~~~l~~~----------g~~~~~~e~~~~~ 91 (110)
+.+|...+.+|+.+++.++.+.- |..++..-+-.++
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi 55 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQII 55 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHH
Confidence 46788999999999999998852 5556665554444
No 163
>PRK01844 hypothetical protein; Provisional
Probab=65.45 E-value=19 Score=19.06 Aligned_cols=32 Identities=9% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 63 DGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+=.|+.+-++.++..+|-+.|+..++.++...
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34688899999999999999999999988775
No 164
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=64.82 E-value=5.3 Score=17.26 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=13.3
Q ss_pred HHHHHhcccCCCCCCceeecc
Q psy10941 88 NEVLQDCLDAEDEDGFVQYAH 108 (110)
Q Consensus 88 ~~~~~~~~~d~~~~g~i~~~e 108 (110)
+.++++- |.|+|-.|+.++
T Consensus 2 ~~LL~qE--DTDgn~qITIeD 20 (30)
T PF07492_consen 2 RSLLEQE--DTDGNFQITIED 20 (30)
T ss_pred hhHhhcc--ccCCCcEEEEec
Confidence 4566676 788888887654
No 165
>KOG3866|consensus
Probab=63.61 E-value=47 Score=23.03 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=40.6
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHc---CCCCC--HHHHHHHhCCCCCcHHHHH---HHHHhhcCCCCCceeHHHHHHH
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYAL---NLNPT--LATIEKLGGTKKKVYEDFL---ECLKLYDKQEDGTMLGAELHHI 74 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~---~~~~~--~~~~~~~~~~~~~~~~~~~---~~F~~~D~~~~g~i~~~e~~~~ 74 (110)
-.|.+.|.|++|.++-.++.+++..- -+.++ ...+..+ ..+.++ -+-+..|.+.+.-|+..||-..
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~Em------eEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEM------EEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHH------HHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 45788999999999999998887631 11111 1122221 011111 2456667777777887777655
Q ss_pred HH
Q psy10941 75 LI 76 (110)
Q Consensus 75 l~ 76 (110)
-.
T Consensus 322 t~ 323 (442)
T KOG3866|consen 322 TD 323 (442)
T ss_pred hh
Confidence 43
No 166
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=62.55 E-value=19 Score=18.20 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=17.3
Q ss_pred CceeHHHHHHHHHHh-----CCCCCHHHHHHHHHhc
Q psy10941 64 GTMLGAELHHILISL-----GERMEESEVNEVLQDC 94 (110)
Q Consensus 64 g~i~~~e~~~~l~~~-----g~~~~~~e~~~~~~~~ 94 (110)
|.++.+.+..+++.+ +...+.++++.++...
T Consensus 10 gsl~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 10 GSLPLDRIHSMLKMFPKDPGGYDISLEELQEFLDRL 45 (60)
T ss_dssp -SEEHHHHHHHHHHH-GGG--TT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHH
Confidence 346666666666655 2446677777777665
No 167
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=61.82 E-value=23 Score=19.37 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=22.4
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 65 TMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 65 ~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.|+.+++.++.......+++++++.+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367788888888777778888876666554
No 168
>KOG0506|consensus
Probab=61.75 E-value=9.3 Score=27.81 Aligned_cols=67 Identities=7% Similarity=0.028 Sum_probs=44.7
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhc-CCCCCceeHHHHHHHHHH
Q psy10941 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYD-KQEDGTMLGAELHHILIS 77 (110)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D-~~~~g~i~~~e~~~~l~~ 77 (110)
+|..+-...++.++.--|.++|++.|+.-+.+.+..++.. ++++-+... ...-+.++++.|++....
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~-------mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDE-------MKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHH-------HHHHHhhhcccccceeecHHHHHHhhcc
Confidence 3555555557899999999999999999888888887422 222221111 134467888888876553
No 169
>KOG0869|consensus
Probab=61.57 E-value=20 Score=22.00 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+|-..+-..+..+|+.+++.|+|..+|+.==.+.+...+.+|
T Consensus 74 EAsekC~~EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 74 EASEKCQREKRKTINGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 466777788889999999999999999653344456666665
No 170
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=61.35 E-value=14 Score=18.99 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=24.8
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.++.++..++.+.+...|..++++.+..-+..+
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~m 42 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAM 42 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 445677788888887777777777777777776
No 171
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=61.34 E-value=27 Score=20.15 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=29.1
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh
Q psy10941 5 FDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG 41 (110)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 41 (110)
|.+.-...+..+|..++.++|.+.|..+...++..++
T Consensus 9 YlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~ 45 (112)
T PTZ00373 9 YLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFF 45 (112)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHH
Confidence 3444444556799999999999999999998888774
No 172
>KOG1954|consensus
Probab=60.46 E-value=9.6 Score=27.09 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
++|-.+. .-+|+|+...-+..|. +.+++...+-.+.+.. |.|.||.++-+||
T Consensus 448 e~fy~l~-p~~gk~sg~~ak~~mv--~sklpnsvlgkiwkla--d~d~dg~ld~eef 499 (532)
T KOG1954|consen 448 EIFYTLS-PVNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLA--DIDKDGMLDDEEF 499 (532)
T ss_pred hhhhccc-ccCceeccchhHHHHH--hccCchhHHHhhhhhh--cCCcccCcCHHHH
Confidence 4566664 3467888777666665 4458888899999999 9999999998887
No 173
>KOG2301|consensus
Probab=59.39 E-value=12 Score=31.25 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=42.0
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCC----CHHHHHHHHHhcccCCCCCCceeecc
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERM----EESEVNEVLQDCLDAEDEDGFVQYAH 108 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~----~~~e~~~~~~~~~~d~~~~g~i~~~e 108 (110)
++++|.+++..+|++..|.|...++..++..+..++ +... +.+-..+ ...+++.|++.+
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdm--p~~~gd~V~f~d 1477 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDL--PMVSGDRVHCLD 1477 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeec--CcCCCCeeehhh
Confidence 788899999999999999999999999999874321 1111 3333334 455677777653
No 174
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=57.96 E-value=33 Score=21.55 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=24.2
Q ss_pred cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 59 DKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 59 D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..+.+|++..+++.+.+..-+..++.++++.+++.-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 568899999999999988877778999999999765
No 175
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=57.39 E-value=35 Score=19.56 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=29.2
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh
Q psy10941 5 FDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG 41 (110)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 41 (110)
|.+.-..++..+|..++.++|.+.|..+....+..+.
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~ 43 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVI 43 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHH
Confidence 4444455566899999999999999999988887763
No 176
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=57.23 E-value=16 Score=15.93 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=12.4
Q ss_pred CCCceeHHHHHHHHHH
Q psy10941 62 EDGTMLGAELHHILIS 77 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~ 77 (110)
++|+|+.+++..+...
T Consensus 1 ~~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 1 SSGTISKEEYLDMASR 16 (33)
T ss_pred CCceecHHHHHHHHHH
Confidence 3678888888888765
No 177
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.01 E-value=21 Score=16.97 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=23.2
Q ss_pred CCCcee-HHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 62 EDGTML-GAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 62 ~~g~i~-~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..|.|+ ..++...|...|..++++.++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 345665 444555566678889999999888764
No 178
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=56.97 E-value=38 Score=21.22 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=29.7
Q ss_pred cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 59 DKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 59 D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..+.+|.+..+++.+.+..-+..++.+.++.+.+.=
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 468899999999999887656678999999888654
No 179
>PF05379 Peptidase_C23: Carlavirus endopeptidase ; InterPro: IPR008041 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C23 (clan CA). The type example is Carlavirus (apple stem pitting virus) endopeptidase, this thought to play a role in the post-translational cleavage of the high molecular weight primary translation products of the virus.; GO: 0003968 RNA-directed RNA polymerase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=56.81 E-value=32 Score=18.91 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=12.3
Q ss_pred CHHHHHHHhCCCCCcHHHHHHHHHhhc
Q psy10941 33 TLATIEKLGGTKKKVYEDFLECLKLYD 59 (110)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~F~~~D 59 (110)
....+..++....++.+.+..+|+.||
T Consensus 30 ~~~~~~~l~~G~Gl~l~~le~~f~~F~ 56 (89)
T PF05379_consen 30 GEELLEELWSGEGLDLEDLEELFELFD 56 (89)
T ss_pred CHHHHHHHHcCCCcCHHHHHHHHHHcC
Confidence 344444444444444444444444443
No 180
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=56.67 E-value=32 Score=18.85 Aligned_cols=44 Identities=7% Similarity=-0.030 Sum_probs=26.6
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 64 GTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 64 g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
-.|...+|+..+...-...+..+...+=.-+ |.-.++.||-=||
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~Ti--DlT~n~~iS~FeF 64 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTI--DLTCNDYISNFEF 64 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH---TTSSSEEEHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHH--hcccCCccchhhh
Confidence 4577888888887654333444555555555 7777788776554
No 181
>KOG2243|consensus
Probab=56.00 E-value=28 Score=29.52 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=38.5
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh------CCCCCcHHHHHHHHHhhc
Q psy10941 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG------GTKKKVYEDFLECLKLYD 59 (110)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~F~~~D 59 (110)
-|..+|+++.|-|+..+|.+++..- ...+..++.-++ .....++++|++-|..-.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhepa 4122 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPA 4122 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcCch
Confidence 4788999999999999999999853 334444444332 233457888887776543
No 182
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.52 E-value=12 Score=23.43 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=34.7
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~ 92 (110)
..+.|+++|.-||+..--.++.+++..++..-+.--+...++.++.
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 3566889999999999888999999999987665445555544444
No 183
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=55.30 E-value=17 Score=19.20 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=10.8
Q ss_pred CCCcccHHHHHHHHHH
Q psy10941 12 GNGQIDAVDLGRVLYA 27 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~ 27 (110)
..|++...|++.++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 3577777777777654
No 184
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=55.10 E-value=19 Score=15.87 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHHcCCCC
Q psy10941 15 QIDAVDLGRVLYALNLNP 32 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~ 32 (110)
.++..|++..+++.|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 467788888888888754
No 185
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=53.82 E-value=15 Score=25.37 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=23.1
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.+|.||++|-.+.+.......+++.++.+++.+
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~l 331 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYL 331 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 457777777777777755556667777777776
No 186
>PLN02952 phosphoinositide phospholipase C
Probab=53.61 E-value=22 Score=26.71 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=16.5
Q ss_pred CCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhc
Q psy10941 63 DGTMLGAELHHILISLGE--RMEESEVNEVLQDC 94 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g~--~~~~~e~~~~~~~~ 94 (110)
.|.++..++....+.+.. ..++.++..+|..+
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~ 47 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKF 47 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHH
Confidence 355566665554444421 12455666666665
No 187
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=53.46 E-value=20 Score=16.98 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=17.1
Q ss_pred eHHHHHHHHHHhCCCCCHHHH
Q psy10941 67 LGAELHHILISLGERMEESEV 87 (110)
Q Consensus 67 ~~~e~~~~l~~~g~~~~~~e~ 87 (110)
+.+++..+.+..|..+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 568888888888988888775
No 188
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=53.00 E-value=8.5 Score=22.42 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=10.0
Q ss_pred CCCcccHHHHHHHHHHc
Q psy10941 12 GNGQIDAVDLGRVLYAL 28 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~~ 28 (110)
.+|.++..|...+...+
T Consensus 36 aDG~v~~~E~~~i~~~~ 52 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLL 52 (140)
T ss_dssp TTSS--CHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 36778877777666554
No 189
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=52.59 E-value=30 Score=18.80 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=21.3
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhcc----cCCCCCCceeeccC
Q psy10941 67 LGAELHHILISLGERMEESEVNEVLQDCL----DAEDEDGFVQYAHS 109 (110)
Q Consensus 67 ~~~e~~~~l~~~g~~~~~~e~~~~~~~~~----~d~~~~g~i~~~ef 109 (110)
+..||...+..-...++..+++.++..+. ......+.|.+..|
T Consensus 2 ~k~eli~~i~~~~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 2 TKSELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 45666666654322356555555444331 11244556666554
No 190
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=52.27 E-value=46 Score=21.76 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=34.9
Q ss_pred HHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 55 LKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 55 F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+...--++.|.+...++..-++.+...++..|+..+-+++
T Consensus 157 ~~i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 157 HDIIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred EEEEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 4444567899999999999999999999999999988876
No 191
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=52.12 E-value=34 Score=17.80 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=24.4
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHh----CCCCCHHHHHHHHHhc
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISL----GERMEESEVNEVLQDC 94 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~----g~~~~~~e~~~~~~~~ 94 (110)
.+...++..-+--+-..+++.++..+ |...+++.++.+|+.|
T Consensus 27 ~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 27 DALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34444443434445566676666654 6778888889999876
No 192
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=51.95 E-value=30 Score=19.00 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=16.9
Q ss_pred CCCcccHHHHHHHHHHcC--CCCCHHHHHHH
Q psy10941 12 GNGQIDAVDLGRVLYALN--LNPTLATIEKL 40 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~ 40 (110)
.+|.++..|...+-..+. +.++..+...+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l 42 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAEL 42 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 478899988766655421 23444444443
No 193
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=51.57 E-value=39 Score=19.36 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=17.7
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 67 LGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 67 ~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+.+|++.++......+++++++.++..+
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3566666666665566777777666543
No 194
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=50.97 E-value=46 Score=19.05 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=38.4
Q ss_pred hhhcCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy10941 6 DIYDTEGNGQIDAVDLGRVLYA----------LNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHIL 75 (110)
Q Consensus 6 ~~~D~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l 75 (110)
++||+..+-+|+..+++.+... -|..++...+.+++ +..- ..+...++..=+.+++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII-------------~E~E-~~g~~~lp~~~L~qlI 75 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQII-------------AEEE-SGGEPVLSTDFLTQII 75 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHH-------------HHHH-hCCCCCCCHHHHHHHH
Confidence 4688989999999999998874 14445555555542 2222 2355556666666666
Q ss_pred HHhCC
Q psy10941 76 ISLGE 80 (110)
Q Consensus 76 ~~~g~ 80 (110)
+.-|.
T Consensus 76 r~yg~ 80 (107)
T TIGR01848 76 RFYGG 80 (107)
T ss_pred HHhCh
Confidence 65553
No 195
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=50.95 E-value=12 Score=23.71 Aligned_cols=46 Identities=11% Similarity=0.328 Sum_probs=33.6
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~ 92 (110)
..+.|+++|..||+..--.++.+++..+|..-+.--+...++.++.
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 3566889999999998888899999999887664334444444433
No 196
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=50.88 E-value=23 Score=15.48 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=14.5
Q ss_pred cccHHHHHHHHHHcCCCCC
Q psy10941 15 QIDAVDLGRVLYALNLNPT 33 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~ 33 (110)
.++..++++.++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4678889999988887643
No 197
>KOG0039|consensus
Probab=50.84 E-value=64 Score=24.53 Aligned_cols=52 Identities=19% Similarity=0.480 Sum_probs=35.8
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHh---C-----CCCCHHHHHHHHHhcccCCCCCCceeecc
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISL---G-----ERMEESEVNEVLQDCLDAEDEDGFVQYAH 108 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~---g-----~~~~~~e~~~~~~~~~~d~~~~g~i~~~e 108 (110)
.|..+|. ++|.++.+++..+++.. + ...+.+....+++.. +.+..|.+.+.+
T Consensus 23 ~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~ 82 (646)
T KOG0039|consen 23 FFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEEL--DPDHKGYITNED 82 (646)
T ss_pred HHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhc--cccccceeeecc
Confidence 4777776 99999999999888753 1 234445556677777 666666655544
No 198
>PLN02222 phosphoinositide phospholipase C 2
Probab=50.70 E-value=43 Score=25.13 Aligned_cols=41 Identities=17% Similarity=0.426 Sum_probs=20.7
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHh-CC-CCCHHHHHHHHHhc
Q psy10941 52 LECLKLYDKQEDGTMLGAELHHILISL-GE-RMEESEVNEVLQDC 94 (110)
Q Consensus 52 ~~~F~~~D~~~~g~i~~~e~~~~l~~~-g~-~~~~~e~~~~~~~~ 94 (110)
..+|..+.. ++.++.++|...|... +. ..+.+.++.+++.+
T Consensus 28 ~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~ 70 (581)
T PLN02222 28 KTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA 70 (581)
T ss_pred HHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh
Confidence 334555532 3466666666666543 22 23455555555554
No 199
>PLN02228 Phosphoinositide phospholipase C
Probab=50.53 E-value=59 Score=24.39 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHh-CC-CCCHHHHHHHHHhcccCCC----CCCceeeccC
Q psy10941 48 YEDFLECLKLYDKQEDGTMLGAELHHILISL-GE-RMEESEVNEVLQDCLDAED----EDGFVQYAHS 109 (110)
Q Consensus 48 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-g~-~~~~~e~~~~~~~~~~d~~----~~g~i~~~ef 109 (110)
.+++..+|..+.. ++.|+.++|...|... +. ..+.+.++.++..+ ... ..|.++.+.|
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~gF 86 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSV--KHHNVFHHHGLVHLNAF 86 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHh--ccchhhcccCccCHHHH
Confidence 3445556877753 3579999999988865 33 25566788888887 321 2345666554
No 200
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=50.06 E-value=43 Score=18.65 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=22.1
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 65 TMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 65 ~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.|+.+++.++....-..+++++++.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 467788888877766778888887666554
No 201
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=50.00 E-value=34 Score=18.73 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=21.2
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHH
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVL 91 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~ 91 (110)
+=|+.+..+|.+.|..+| +|.+++++.+
T Consensus 59 ~iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 59 GIGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred CCCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 347778888888888887 6888877665
No 202
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=49.36 E-value=16 Score=23.13 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=45.1
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHh---------CCCCCcHHHHHHHHHhhcCCCCCceeH----
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG---------GTKKKVYEDFLECLKLYDKQEDGTMLG---- 68 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~F~~~D~~~~g~i~~---- 68 (110)
+++|.-||+.+--.++-.++..+|..-|+--....+...+ +....++.+|...|-.-.+..++..+.
T Consensus 58 reaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~NA~~~l~l~~e~Gsf~~flWsf~~~~~~~~~~~~~~~~p 137 (188)
T COG2818 58 REAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLELQKEFGSFSEFLWSFVGGKPSRNQVNDGSEVP 137 (188)
T ss_pred HHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhcCCCcccccccchhhcc
Confidence 5677777777777777777777777666555554444433 222235566554444333333433333
Q ss_pred ------HHHHHHHHHhCCC
Q psy10941 69 ------AELHHILISLGER 81 (110)
Q Consensus 69 ------~e~~~~l~~~g~~ 81 (110)
..+...|+.-|.+
T Consensus 138 a~t~~S~~mskaLKkrGf~ 156 (188)
T COG2818 138 ASTELSDAMSKALKKRGFK 156 (188)
T ss_pred ccchhHHHHHHHHHHccCe
Confidence 3455666666654
No 203
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=49.25 E-value=83 Score=21.48 Aligned_cols=81 Identities=9% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH----hC-CCCCH
Q psy10941 10 TEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS----LG-ERMEE 84 (110)
Q Consensus 10 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~----~g-~~~~~ 84 (110)
.++.+.|+...+..++..+.. ......+.........+..+...+...+.+.++..++...+.. .| .+++.
T Consensus 256 ~~~~~~it~~~v~~a~~~~~~----~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 331 (365)
T TIGR02928 256 REGAERVTEDHVEKAQEKIEK----DRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQ 331 (365)
T ss_pred HcCCCCCCHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcH
Confidence 344567888888887776531 1122222333333333344444333335566777777664443 34 24677
Q ss_pred HHHHHHHHhc
Q psy10941 85 SEVNEVLQDC 94 (110)
Q Consensus 85 ~e~~~~~~~~ 94 (110)
.++...+..+
T Consensus 332 ~~~~~~l~~l 341 (365)
T TIGR02928 332 RRISDLLNEL 341 (365)
T ss_pred HHHHHHHHHH
Confidence 7777777766
No 204
>KOG0998|consensus
Probab=48.91 E-value=21 Score=27.95 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=42.9
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
|-..|+..|..+.|.|+..+-...+..-| +++..+-.+.... +..+-|.++..+|
T Consensus 13 ~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~--d~~~~g~l~~q~f 67 (847)
T KOG0998|consen 13 FDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLA--DSSGKGFLNRQGF 67 (847)
T ss_pred HHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhcccccc--ccccCCccccccc
Confidence 33469999999999999999999988777 7777777777666 6666677766554
No 205
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.85 E-value=48 Score=19.24 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=22.6
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 66 MLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 66 i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
-+.+|++.++..-+..+++++++.++.-.
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 35678888888888888888888887644
No 206
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=48.45 E-value=21 Score=21.06 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHh---hcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10941 44 KKKVYEDFLECLKL---YDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92 (110)
Q Consensus 44 ~~~~~~~~~~~F~~---~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~ 92 (110)
..++.+++..+.+. +-. +|..+.+.+..++...| +++++++..++
T Consensus 98 i~vsd~ev~~~i~~~~~f~~--~g~~~~~~f~~~L~~~g--~t~~~~~~~lr 145 (154)
T PF13624_consen 98 ISVSDAEVDDAIKQIPAFQE--NGKFDKEAFEEFLKQQG--MTEEEFKEELR 145 (154)
T ss_dssp ----HHHHHHHHHH--HHHH--H----HHHHHHHHH----------------
T ss_pred CCCCHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHhh--ccccccchhhh
Confidence 34455555555544 222 37778888998888877 56666655443
No 207
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=48.13 E-value=45 Score=18.04 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCCC-cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHH
Q psy10941 19 VDLGRVLYALNLNPTLATIEKLGGTKKK-VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEV 87 (110)
Q Consensus 19 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~ 87 (110)
.+.+.+.+.+| +++.++..+-...+. ..+....+...+-......=+...+..+|..++.....+.+
T Consensus 14 ~~Wk~laR~LG--lse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~At~~~L~~aL~~~~l~~~ad~i 81 (86)
T cd08306 14 RDWRKLARKLG--LSETKIESIEEAHPRNLREQVRQSLREWKKIKKKEAKVADLIKALRDCQLNLVADLV 81 (86)
T ss_pred hhHHHHHHHcC--CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcchHHHHHHHHHHHcCcHHHHHHH
Confidence 46777777777 677777777544332 23445555544432222445678888888888854433333
No 208
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=47.65 E-value=38 Score=17.10 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=21.2
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10941 66 MLGAELHHILISLGERMEESEVNEVLQD 93 (110)
Q Consensus 66 i~~~e~~~~l~~~g~~~~~~e~~~~~~~ 93 (110)
.+.+++..+.+..|..+|.+++...-..
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~~~e 52 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEAGEE 52 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 3478888888888988998888764433
No 209
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=47.32 E-value=41 Score=20.24 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=20.8
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 66 MLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 66 i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.++.+++.+...+...+|++|++.+++.+
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I 55 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARI 55 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 45677777766666667777887777776
No 210
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=46.49 E-value=51 Score=18.24 Aligned_cols=23 Identities=9% Similarity=-0.026 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHh
Q psy10941 19 VDLGRVLYALNLNPTLATIEKLG 41 (110)
Q Consensus 19 ~e~~~~l~~~~~~~~~~~~~~~~ 41 (110)
..++.+|+.-|..++.+++..++
T Consensus 12 ~~Lk~lLk~rGi~v~~~~L~~f~ 34 (90)
T PF02337_consen 12 SILKHLLKERGIRVKKKDLINFL 34 (90)
T ss_dssp HHHHHHHHCCT----HHHHHHHH
T ss_pred HHHHHHHHHcCeeecHHHHHHHH
Confidence 34566666667777777776653
No 211
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=46.37 E-value=41 Score=20.45 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=18.1
Q ss_pred hhhcCCCCCcccHHHHHHHHHHc
Q psy10941 6 DIYDTEGNGQIDAVDLGRVLYAL 28 (110)
Q Consensus 6 ~~~D~~~~g~i~~~e~~~~l~~~ 28 (110)
...|.++.++||.++++.++-.+
T Consensus 76 ~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 76 NQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHhcCCceeHHHHHHHHHHH
Confidence 45677777889999999988654
No 212
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=46.26 E-value=39 Score=16.88 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=33.4
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
+|.... +.+.+...++.+.|. +++.-+-.+++++ ...|-|.++.+
T Consensus 13 Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L----~~~GlV~~~~y 57 (60)
T PF01325_consen 13 IYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRL----AEKGLVEYEPY 57 (60)
T ss_dssp HHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHH----HHTTSEEEETT
T ss_pred HHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHH----HHCCCEEecCC
Confidence 455554 778899999988874 7888899999998 45777777643
No 213
>KOG2301|consensus
Probab=45.40 E-value=50 Score=27.97 Aligned_cols=66 Identities=18% Similarity=0.087 Sum_probs=44.5
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCCC----CHHH-HH----HHhCCCCCcHHHHHHHHHhhcCCCCCcee
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNP----TLAT-IE----KLGGTKKKVYEDFLECLKLYDKQEDGTML 67 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~----~~~~-~~----~~~~~~~~~~~~~~~~F~~~D~~~~g~i~ 67 (110)
.++++.+|++..|.|...++...++.+..++ +.+. +. .+..+..+++.+..-++..-..+-++.+.
T Consensus 1420 ~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~r~l~i~~~~~ 1494 (1592)
T KOG2301|consen 1420 YEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTKRVLGIKKELD 1494 (1592)
T ss_pred HHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHHHhhccccccc
Confidence 4678899999999999999999999874332 2221 11 11256677888877777666555555444
No 214
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=45.23 E-value=37 Score=16.34 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCceeHHHHHHHHHH-hCCCCCHHHHHHHHHh
Q psy10941 63 DGTMLGAELHHILIS-LGERMEESEVNEVLQD 93 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~-~g~~~~~~e~~~~~~~ 93 (110)
.+.+|+..+..-|.. .|...|+++++-.+.+
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 456889999988876 4788999998876654
No 215
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=44.62 E-value=36 Score=16.69 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=22.4
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQD 93 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~ 93 (110)
..|.|+.+||..-+...-.-.+..++..++..
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~D 51 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFAD 51 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHcc
Confidence 56888888888877765444566677766643
No 216
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=43.65 E-value=13 Score=23.28 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=31.6
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~ 92 (110)
-.+.|+++|.-||+..--.++.+++..++..-+.--+...+..++.
T Consensus 47 Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~ 92 (179)
T PF03352_consen 47 KREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVIN 92 (179)
T ss_dssp THHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 3566788999999988888889999988887665455555555544
No 217
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=43.31 E-value=62 Score=18.31 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=25.7
Q ss_pred hhcCCCCCceeHH----HHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 57 LYDKQEDGTMLGA----ELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 57 ~~D~~~~g~i~~~----e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.....++|.--++ .+...+...|.++|+++++.+++..
T Consensus 59 ~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 59 VAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred HHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3333346654444 4556677779999999999988764
No 218
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=43.28 E-value=73 Score=19.12 Aligned_cols=32 Identities=6% Similarity=0.077 Sum_probs=23.4
Q ss_pred CCceeHHHHHHHHHH-hCCCCCHHHHHHHHHhc
Q psy10941 63 DGTMLGAELHHILIS-LGERMEESEVNEVLQDC 94 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~-~g~~~~~~e~~~~~~~~ 94 (110)
.+.|+.+-|+..|.. +...+|++-.+.+|..|
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 348999999999997 45568998899999888
No 219
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=43.03 E-value=33 Score=17.49 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=18.8
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..|.++..++..-+ + ++++.++.+++.+
T Consensus 11 ~~~~~S~~eLa~~~---~--~s~~~ve~mL~~l 38 (69)
T PF09012_consen 11 ERGRVSLAELAREF---G--ISPEAVEAMLEQL 38 (69)
T ss_dssp HS-SEEHHHHHHHT---T----HHHHHHHHHHH
T ss_pred HcCCcCHHHHHHHH---C--cCHHHHHHHHHHH
Confidence 35677777776554 3 7899999999988
No 220
>PLN02230 phosphoinositide phospholipase C 4
Probab=42.93 E-value=1.4e+02 Score=22.63 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=35.9
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLN---PTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
+.+|..+-.++ +.++..+|...|...... .+......++.. +..-+..+.+-+.+.++.+.|...|.+
T Consensus 32 ~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 32 RDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDE-------VLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHH-------HHhhccccccccccccCHHHHHHHHcC
Confidence 45666664333 678888888887765421 233333333211 000111112234456889999888865
No 221
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=42.41 E-value=71 Score=18.77 Aligned_cols=41 Identities=10% Similarity=0.310 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhc
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISL-GERMEESEVNEVLQDC 94 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~-g~~~~~~e~~~~~~~~ 94 (110)
|.++|+.|-. +.|+.+.+..++.+. |..+|..+++-+..++
T Consensus 39 l~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 39 LIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 4556666652 367777777777665 4567777776666655
No 222
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=41.71 E-value=69 Score=18.43 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
|.+.++.+. .....++.+|+..++. .|+..+..+++++
T Consensus 6 y~~L~~~~~-~~~~~vtl~elA~~l~-----cS~Rn~r~lLkkm 43 (115)
T PF12793_consen 6 YQRLWQHYG-GQPVEVTLDELAELLF-----CSRRNARTLLKKM 43 (115)
T ss_pred HHHHHHHcC-CCCcceeHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 445566665 6677899999999886 5888899999887
No 223
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=39.03 E-value=59 Score=16.87 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=13.8
Q ss_pred eeHHHHHHHHHHhC----CCCCHHHHHHHHHhc
Q psy10941 66 MLGAELHHILISLG----ERMEESEVNEVLQDC 94 (110)
Q Consensus 66 i~~~e~~~~l~~~g----~~~~~~e~~~~~~~~ 94 (110)
|+.+++..+++.-+ ...+++.+..++.-+
T Consensus 30 vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 30 VSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred cCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 55555555555432 124555555555433
No 224
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=38.85 E-value=80 Score=18.31 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..|.++.+++..-+..-+..++.+++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 456777788877776556667777776666554
No 225
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=38.43 E-value=22 Score=18.35 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10941 63 DGTMLGAELHHILISLGERMEESEVNEVLQD 93 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~ 93 (110)
.|.+++.-+..+++.+-.....++++.+++.
T Consensus 47 rgrvskavlvkmlrkly~~tk~e~vkrmlhl 77 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEATKNEEVKRMLHL 77 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhhchHHHHHHHHh
Confidence 4778888888888887655566777777654
No 226
>KOG0719|consensus
Probab=38.40 E-value=1.2e+02 Score=20.21 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 20 DLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 20 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
++..+|+.+-..++.+.+..+-.....+.++-..+...|. .+.|.| +-+...+...... ....++.++..+
T Consensus 94 ~~~e~~~~iyk~VteedIeef~a~Y~gSEeEk~Dl~~~Y~-k~kG~m--~~i~~~~l~~d~~-De~R~keiid~~ 164 (264)
T KOG0719|consen 94 DWLEFWRAIYKKVTEEDIEEFEANYQGSEEEKKDLLKLYN-KFKGKM--NRILESVLCSDPK-DEDRFKEIIDEA 164 (264)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHhcccHHHHHHHHHHHH-hcCChH--HHHHHhhhcCCcc-cHHHHHHHHHHH
Confidence 4555555555566666666665555555555444444443 234544 2233333322222 455667777666
No 227
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=37.82 E-value=78 Score=17.91 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=26.2
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.|..+.+-|..+.+ +|.|+++.|.+.+ |.+=+.+=+.++|..+
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdAL 70 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDAL 70 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHH
Confidence 46667777888876 8899998887655 3333444455555544
No 228
>KOG4403|consensus
Probab=36.46 E-value=75 Score=23.12 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=31.1
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHH-HHh-CCCCCcHHHHHHHHH
Q psy10941 2 KFAFDIYDTEGNGQIDAVDLGRVLYA-LNLNPTLATIE-KLG-GTKKKVYEDFLECLK 56 (110)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~-~~~-~~~~~~~~~~~~~F~ 56 (110)
+.+-+.+|.+.+|.|+.+|--..|+. |.+.-+...-. .+- .+..|+.+++.++|.
T Consensus 71 r~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 71 RDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHGDDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccCCccceeHHHHHHHHH
Confidence 45567788888999999887777764 33322222222 211 334455555555443
No 229
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=36.29 E-value=98 Score=18.62 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=9.1
Q ss_pred HcCCCCCHHHHHHHh
Q psy10941 27 ALNLNPTLATIEKLG 41 (110)
Q Consensus 27 ~~~~~~~~~~~~~~~ 41 (110)
++|+.++++++..++
T Consensus 101 klGi~Vs~~El~d~l 115 (145)
T PF13623_consen 101 KLGITVSDDELQDML 115 (145)
T ss_pred HhCCccCHHHHHHHH
Confidence 456666666666655
No 230
>PLN02859 glutamine-tRNA ligase
Probab=35.90 E-value=2e+02 Score=22.77 Aligned_cols=58 Identities=5% Similarity=0.100 Sum_probs=43.9
Q ss_pred HHHHHhCCCCC-cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 36 TIEKLGGTKKK-VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 36 ~~~~~~~~~~~-~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.+...+..+.+ +-.++..|++.+...+...++..+|...+ ..|..+|+++++..+..+
T Consensus 73 ~lv~~I~~gkIkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~C-GVGV~VT~EqI~~~V~~~ 131 (788)
T PLN02859 73 TLLSYIVSSKIKTPAQLEAAFSFFSSTGPESFDLNKFEEAC-GVGVVVSPEDIEAAVNEV 131 (788)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhCCCCccCHHHHHHhC-CCCEEECHHHHHHHHHHH
Confidence 34444445444 56788889999977777788888988877 358889999999988876
No 231
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.74 E-value=99 Score=18.48 Aligned_cols=62 Identities=23% Similarity=0.152 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 17 DAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 17 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
...++.+.|+.-|+.+++..+.-+ +.+- ...+.+|.+++...+..-+..++..-+=..++.+
T Consensus 4 ~~~~~~~~lk~~glr~T~qR~~vl---------------~~L~-~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 4 TLEDAIERLKEAGLRLTPQRLAVL---------------ELLL-EADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHH---------------HHHH-hcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 356788888888988888765532 3332 2233389999999998877777765554444443
No 232
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=35.71 E-value=74 Score=17.08 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=6.3
Q ss_pred eeHHHHHHHHHHhC
Q psy10941 66 MLGAELHHILISLG 79 (110)
Q Consensus 66 i~~~e~~~~l~~~g 79 (110)
|......+.++.+|
T Consensus 9 VP~~~wk~F~R~LG 22 (77)
T cd08815 9 VPARRWKEFVRTLG 22 (77)
T ss_pred CChHHHHHHHHHcC
Confidence 34444444444444
No 233
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=35.59 E-value=76 Score=17.10 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhC
Q psy10941 20 DLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLG 79 (110)
Q Consensus 20 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g 79 (110)
+.+.+.+.+| ++..++..+-.+.....+........+-....+.-+.+.+.++|..+|
T Consensus 20 ~Wk~Lar~LG--ls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~~~ 77 (86)
T cd08318 20 DWKTLAPHLE--MKDKEIRAIESDSEDIKMQAKQLLVAWQDREGSQATPETLITALNAAG 77 (86)
T ss_pred hHHHHHHHcC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCccccHHHHHHHHHHcC
Confidence 3444444444 466666665433332344444444444323224456777777777766
No 234
>KOG0713|consensus
Probab=35.56 E-value=86 Score=21.85 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=30.0
Q ss_pred cHHHHHHHHHhh------cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 47 VYEDFLECLKLY------DKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 47 ~~~~~~~~F~~~------D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+.+++++||+.+ |++.+..-..++|..+-.+. ..|++++.+..+..+
T Consensus 29 sd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AY-EVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 29 SDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAY-EVLSDPEKRKHYDTY 81 (336)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH-HHhcCHHHHHHHHhh
Confidence 556666677766 66666666666666655433 236777777776665
No 235
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=35.22 E-value=1.4e+02 Score=20.04 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=12.7
Q ss_pred CCCcccHHHHHHHHHH
Q psy10941 12 GNGQIDAVDLGRVLYA 27 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~ 27 (110)
.+|.||..|+...+..
T Consensus 31 ~~~~IT~~e~~~~~k~ 46 (287)
T PRK03095 31 KAGDITKDEFYEQMKT 46 (287)
T ss_pred cCCcccHHHHHHHHHH
Confidence 4688999998888765
No 236
>PLN02230 phosphoinositide phospholipase C 4
Probab=35.08 E-value=1.7e+02 Score=22.22 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=33.9
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhC-C--CCCHHHHHHHHHhc
Q psy10941 47 VYEDFLECLKLYDKQEDGTMLGAELHHILISLG-E--RMEESEVNEVLQDC 94 (110)
Q Consensus 47 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g-~--~~~~~e~~~~~~~~ 94 (110)
...++..+|..+..++ +.++.++|...|.... . ..+.+.++.++..+
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~ 76 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEV 76 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 3455666799996444 7999999999998753 2 35677777777655
No 237
>KOG1411|consensus
Probab=34.09 E-value=1.2e+02 Score=21.66 Aligned_cols=53 Identities=9% Similarity=0.045 Sum_probs=33.6
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCC-CCCHHHHHHHHHhcccCCCCCCceeec
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGE-RMEESEVNEVLQDCLDAEDEDGFVQYA 107 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~-~~~~~e~~~~~~~~~~d~~~~g~i~~~ 107 (110)
.|..+-+.++-. +++.+.+=+..++. -+++++++.+.+.+.....+||+||..
T Consensus 352 L~d~L~~~gs~~-~W~hI~~QIGMF~fTgl~peQv~~l~ke~~iYmT~dGRiS~a 405 (427)
T KOG1411|consen 352 LFDALEKEGSPG-NWSHITKQIGMFCFTGLNPEQVDWLTKEYHIYLTKDGRISMA 405 (427)
T ss_pred HhHHhhcCCCCc-cHHHHHHhhheeeecCCCHHHHHHHHhhheeeeccCceEeec
Confidence 455554444332 44444444333332 389999999999885456889999864
No 238
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.34 E-value=1.2e+02 Score=18.88 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=42.7
Q ss_pred hhhcCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy10941 6 DIYDTEGNGQIDAVDLGRVLYA----------LNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHIL 75 (110)
Q Consensus 6 ~~~D~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l 75 (110)
++|+...+-+|+..++...+.. .|..++...+.++ +|..-.+.|..-++..=+++++
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsgeDiT~sVLtQI-------------IfEeE~k~G~~llpi~fLrQlI 85 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSGEDITHSVLTQI-------------IFEEENKGGQNLLPISFLRQLI 85 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhcCCceEEeeccccchhhHHHHHHH-------------HHHHhccCCCccccHHHHHHHH
Confidence 3567777889999999988874 2556777777776 4666666776666666666666
Q ss_pred HHhC
Q psy10941 76 ISLG 79 (110)
Q Consensus 76 ~~~g 79 (110)
.-.|
T Consensus 86 ~fYG 89 (193)
T COG5394 86 SFYG 89 (193)
T ss_pred HHHh
Confidence 5444
No 239
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=33.27 E-value=1.6e+02 Score=20.08 Aligned_cols=56 Identities=9% Similarity=-0.081 Sum_probs=30.9
Q ss_pred HHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcC--CCCCceeHHHHHHHHHH
Q psy10941 22 GRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK--QEDGTMLGAELHHILIS 77 (110)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~--~~~g~i~~~e~~~~l~~ 77 (110)
.+.+...|..++++-+..++.....+...+......+.. .+++.|+.+++..++..
T Consensus 152 ~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~ 209 (343)
T PRK06585 152 DDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGD 209 (343)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Confidence 334445677777777776664444444444433333321 33456777777776654
No 240
>KOG4403|consensus
Probab=33.03 E-value=49 Score=23.98 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=30.1
Q ss_pred CCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 42 GTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 42 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
+..+.+++.++.+-+.+|.+++|.|+.+|--..|+.
T Consensus 61 ~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 61 EQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred ccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 345568888999999999999999999988777764
No 241
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=33.00 E-value=77 Score=16.39 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHcCC-CCCHHHHHHHhCCCCCcHHH-HHHHHHhhcCCCCCceeHHHHHHHH
Q psy10941 16 IDAVDLGRVLYALNL-NPTLATIEKLGGTKKKVYED-FLECLKLYDKQEDGTMLGAELHHIL 75 (110)
Q Consensus 16 i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~F~~~D~~~~g~i~~~e~~~~l 75 (110)
++.+-++.+-.++|. .++++-...+..+....-.+ +..+-+.+-..+..+++.+++-.+|
T Consensus 4 ~~~esvk~iAes~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~AL 65 (66)
T PF02969_consen 4 FSQESVKDIAESLGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSAL 65 (66)
T ss_dssp --HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHh
Confidence 456777888888998 45555444442221111111 1133333334556677777776665
No 242
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=32.96 E-value=98 Score=17.59 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.8
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 66 MLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 66 i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+|.+++..++...|..+++.-+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 88889999999888888888888888775
No 243
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=32.94 E-value=54 Score=14.60 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=10.9
Q ss_pred eHHHHHHHHHHhCCCCC
Q psy10941 67 LGAELHHILISLGERME 83 (110)
Q Consensus 67 ~~~e~~~~l~~~g~~~~ 83 (110)
+.++++.+|..-|.+.+
T Consensus 5 s~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 45677777777665544
No 244
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=32.79 E-value=1.6e+02 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=33.4
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.--..+..|.|.++.+|..++|..+...-..-.+++++.++
T Consensus 460 l~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~ 500 (548)
T PF02459_consen 460 LLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQA 500 (548)
T ss_pred HHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence 34555778888999999999999998766666788888887
No 245
>KOG0506|consensus
Probab=32.16 E-value=89 Score=23.13 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+|..+-...++.++.-.|..+|+..|..-++.-++.+++.+
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~m 131 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEM 131 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHH
Confidence 67777656679999999999999999988888888888765
No 246
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.59 E-value=93 Score=16.92 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 70 ELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 70 e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
++..+++++. +|++++..++...
T Consensus 38 EIv~~VR~~~--mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 38 EIVQMVRSMK--MTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHH
Confidence 3444444444 6666666666554
No 247
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=31.47 E-value=70 Score=15.46 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..|.|+..+++..+. +|..-+-.+++.+
T Consensus 7 ~~~~itv~~~rd~lg-----~sRK~ai~lLE~l 34 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG-----LSRKYAIPLLEYL 34 (50)
T ss_dssp TTSSBEHHHHHHHHT-----S-HHHHHHHHHHH
T ss_pred cCCcCcHHHHHHHHC-----ccHHHHHHHHHHH
Confidence 378999999999884 6777777788877
No 248
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=31.37 E-value=66 Score=15.10 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 69 AELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 69 ~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+|...+|..+| .++.++...+...
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~ 27 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKL 27 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHh
Confidence 56777888888 5777888877776
No 249
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=31.19 E-value=78 Score=19.51 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHhc
Q psy10941 82 MEESEVNEVLQDC 94 (110)
Q Consensus 82 ~~~~e~~~~~~~~ 94 (110)
+|++|.+++++.|
T Consensus 17 lp~~e~~e~l~~Y 29 (181)
T PF08006_consen 17 LPEEEREEILEYY 29 (181)
T ss_pred CCHHHHHHHHHHH
Confidence 4555555444443
No 250
>PRK05629 hypothetical protein; Validated
Probab=30.99 E-value=1.7e+02 Score=19.78 Aligned_cols=51 Identities=8% Similarity=0.124 Sum_probs=24.6
Q ss_pred HcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 27 ALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
..|..++..-+..++.....+...+....+.+-...+|.|+.+++..++..
T Consensus 141 ~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~ 191 (318)
T PRK05629 141 NHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVG 191 (318)
T ss_pred HcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCC
Confidence 445566665555544333233333333333322223456777777766543
No 251
>PRK03968 DNA primase large subunit; Validated
Probab=30.88 E-value=1.7e+02 Score=20.90 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=45.7
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHh------hcCCCCCceeHHHHHHHHHH
Q psy10941 11 EGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKL------YDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 11 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~------~D~~~~g~i~~~e~~~~l~~ 77 (110)
.+.+.+..++...+-+..+..+..+++..+.....+.+.+|..+... +=.+|.-.|+++++..++..
T Consensus 117 ~~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~y~i~~~df~~l~gs~sLt~~iL~nG~VYLdkee~iki~~e 189 (399)
T PRK03968 117 VNAIEIPEKDRKILERVRGRELPPEELEDLLPEYKIKWKDLLDLIGSGSLTDLYIRNGRVYLRREEFLKLWSK 189 (399)
T ss_pred cccccccchhhhhhhhhcccccCHHHHHHHhhhccccHHHHHHhcCCcchhhhhhcCcEEEecHHHHHHHHHH
Confidence 34556677777777777888888888888887777777777653322 22345556777777776664
No 252
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=29.43 E-value=1.2e+02 Score=17.40 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=25.7
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 65 TMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 65 ~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.||.+.+..++...|..+.+.-+..++..+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 789999999999999888888888888776
No 253
>KOG4070|consensus
Probab=29.42 E-value=85 Score=19.35 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=25.4
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhC-----CCCCHHHHHHHHHhc
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLG-----ERMEESEVNEVLQDC 94 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g-----~~~~~~e~~~~~~~~ 94 (110)
+|...--..-+.++.++++.+|..+. .+..+++++++.+.+
T Consensus 62 ~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 62 VFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLL 107 (180)
T ss_pred eeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 35555555566777777777776654 245566666666554
No 254
>PF11181 YflT: Heat induced stress protein YflT
Probab=29.02 E-value=1.1e+02 Score=16.97 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 69 AELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 69 ~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
++++..|..+| +++++++..-+.+
T Consensus 71 d~~~~~l~~lG--l~~~ea~~y~~~l 94 (103)
T PF11181_consen 71 DELRSKLESLG--LSEDEAERYEEEL 94 (103)
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 57888899999 8999999888877
No 255
>PRK10945 gene expression modulator; Provisional
Probab=28.99 E-value=98 Score=16.37 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=8.9
Q ss_pred HHHHHHHhCCCCCHHHHHHHHH
Q psy10941 71 LHHILISLGERMEESEVNEVLQ 92 (110)
Q Consensus 71 ~~~~l~~~g~~~~~~e~~~~~~ 92 (110)
+..++......+++.|+..+..
T Consensus 24 LEkvie~~~~~L~~~E~~~f~~ 45 (72)
T PRK10945 24 LERVIEKNKYELSDDELAVFYS 45 (72)
T ss_pred HHHHHHHhhccCCHHHHHHHHH
Confidence 3333333334444444444333
No 256
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=28.93 E-value=1e+02 Score=16.68 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=20.9
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhcc----cCCCCCCceeeccC
Q psy10941 67 LGAELHHILISLGERMEESEVNEVLQDCL----DAEDEDGFVQYAHS 109 (110)
Q Consensus 67 ~~~e~~~~l~~~g~~~~~~e~~~~~~~~~----~d~~~~g~i~~~ef 109 (110)
+..||...+..-...++..++..++..+. ......+.|.+..|
T Consensus 2 tk~eli~~ia~~~~~~s~~~~~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T PRK00199 2 TKSELIERLAARNPHLSAKDVENAVKEILEEMSDALARGDRIEIRGF 48 (94)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence 45666666654322356666555554431 01234555665543
No 257
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.61 E-value=2.5e+02 Score=20.82 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=39.3
Q ss_pred ccHHHHHH----HHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH
Q psy10941 16 IDAVDLGR----VLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVL 91 (110)
Q Consensus 16 i~~~e~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~ 91 (110)
++..++.. ++..-|...+..-+..+......+...........-.-+.|.|+.+++..++.. .++..+-.++
T Consensus 178 l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~----~~~~~i~~ll 253 (509)
T PRK14958 178 LPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGT----IEPLLLFDIL 253 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCC----CCHHHHHHHH
Confidence 44455444 344446666666655554333333333333332211125688998888887642 3455555555
Q ss_pred Hhc
Q psy10941 92 QDC 94 (110)
Q Consensus 92 ~~~ 94 (110)
..+
T Consensus 254 ~al 256 (509)
T PRK14958 254 EAL 256 (509)
T ss_pred HHH
Confidence 554
No 258
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=28.43 E-value=30 Score=14.25 Aligned_cols=9 Identities=44% Similarity=0.899 Sum_probs=6.1
Q ss_pred CCCCCceee
Q psy10941 98 EDEDGFVQY 106 (110)
Q Consensus 98 ~~~~g~i~~ 106 (110)
.+.||.++|
T Consensus 17 t~~dgtvsy 25 (27)
T PF04022_consen 17 TNQDGTVSY 25 (27)
T ss_pred eccCceEec
Confidence 466777776
No 259
>KOG1954|consensus
Probab=27.83 E-value=89 Score=22.53 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.0
Q ss_pred HHHHhhcCCCCCceeHHHHHHH
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHI 74 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~ 74 (110)
++|+.-|.+++|.++-+||.-+
T Consensus 481 kiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 481 KIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hhhhhhcCCcccCcCHHHHHHH
Confidence 4599999999999999998744
No 260
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=27.80 E-value=1.2e+02 Score=16.99 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=33.0
Q ss_pred HHHHHHcCCCCCHHH-HHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 22 GRVLYALNLNPTLAT-IEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 22 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
..-|..+|..++... +..++...+..|+.+..++.... ....++.+++...|..
T Consensus 54 ~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~~~~~i~~~~--~~~~~t~~el~~~L~~ 108 (119)
T PF14223_consen 54 VDELRAIGKPISDEDLVSKILRSLPPSYDTFVTAIRNSK--DLPKMTLEELISRLLA 108 (119)
T ss_pred hhhhhhcCCcccchhHHHHHHhcCCchhHHHHHHHHhcC--CCCcCCHHHHHHHHHH
Confidence 333445677776655 44556777777777777666542 2223677887777654
No 261
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=27.78 E-value=1.6e+02 Score=18.41 Aligned_cols=28 Identities=7% Similarity=0.003 Sum_probs=12.9
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 65 TMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 65 ~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.++.+.+..+....+ =+..++..+++..
T Consensus 178 ~~~~~~l~~L~~~~~--gn~r~L~~~l~~~ 205 (226)
T TIGR03420 178 QLPDEVADYLLRHGS--RDMGSLMALLDAL 205 (226)
T ss_pred CCCHHHHHHHHHhcc--CCHHHHHHHHHHH
Confidence 355555544444322 2444555554444
No 262
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=27.57 E-value=94 Score=15.69 Aligned_cols=47 Identities=21% Similarity=0.034 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCC
Q psy10941 34 LATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGE 80 (110)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~ 80 (110)
+....+++...++..+++....+.-...-++.++...++.++-..|.
T Consensus 13 p~l~ekIL~YePI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD~~gI 59 (64)
T PF09494_consen 13 PELYEKILMYEPINLEELHAWLKASGIGFDRKVDPSKLKEWLDSQGI 59 (64)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHcCCCccceeCHHHHHHHHHHCCc
Confidence 34455666666666666666555333344556777777777766654
No 263
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=27.51 E-value=52 Score=21.28 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCCCC-cHHHHHHHHHhhcCCCCCce----eHHHHHHHHH---HhCCCCCHHHHHH
Q psy10941 18 AVDLGRVLYALNLNPTLATIEKLGGTKKK-VYEDFLECLKLYDKQEDGTM----LGAELHHILI---SLGERMEESEVNE 89 (110)
Q Consensus 18 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~F~~~D~~~~g~i----~~~e~~~~l~---~~g~~~~~~e~~~ 89 (110)
+.|++++|..+|......... ....... ..+++.++...+.+.+.|.+ ....+..+.. .+.-.++.+.+..
T Consensus 38 QpEiRr~L~~lG~~~~~~~~~-~~~~~~~~~i~~Iv~A~~~Ls~~k~GALIvier~~~L~~~~~~G~~lda~~s~elL~~ 116 (211)
T TIGR00159 38 NKELRRFLEQLGRFTLLFRLS-KKKEEQKKFIDEITKAVKRLSENKIGALIAIEKQDSLESYINIGYRIDSKFSSELLIT 116 (211)
T ss_pred cHHHHHHHHHhcCCccccccc-ccchhHHHHHHHHHHHHHHHhccCeeEEEEEecCCCHHHHhcCCEEEEEeccHHHHHH
Confidence 368899998887643100000 0000000 13567788899999999875 3334444332 1233577877777
Q ss_pred HHHhcccCCCCCCce
Q psy10941 90 VLQDCLDAEDEDGFV 104 (110)
Q Consensus 90 ~~~~~~~d~~~~g~i 104 (110)
+|... .+-.||.+
T Consensus 117 IF~p~--splHDGAv 129 (211)
T TIGR00159 117 IFYPE--TPLHDGAV 129 (211)
T ss_pred hCCCC--CCCCCcEE
Confidence 77655 34446643
No 264
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=27.29 E-value=1.5e+02 Score=18.00 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=29.0
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCceeecc
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAH 108 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~i~~~e 108 (110)
+.|.+...++...|. +++.-+.++++++ ...|-|.|..
T Consensus 21 ~~~~~~~~diA~~L~-----Vsp~sVt~ml~rL----~~~GlV~~~~ 58 (154)
T COG1321 21 EKGFARTKDIAERLK-----VSPPSVTEMLKRL----ERLGLVEYEP 58 (154)
T ss_pred ccCcccHHHHHHHhC-----CCcHHHHHHHHHH----HHCCCeEEec
Confidence 778888888888775 6777788888888 5577777754
No 265
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=27.20 E-value=78 Score=14.64 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 48 YEDFLECLKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 48 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
+++|.++.+.+-. +.++.+++...+..+
T Consensus 4 Y~~FL~il~~y~~---~~~~~~~v~~~v~~L 31 (47)
T PF02671_consen 4 YNEFLKILNDYKK---GRISRSEVIEEVSEL 31 (47)
T ss_dssp HHHHHHHHHHHHC---TCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCCHHHHHHHHHHH
Confidence 3456666666643 678888888777765
No 266
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=27.03 E-value=2.2e+02 Score=19.72 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=25.8
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCC-CCCHHHHHHHHHhc
Q psy10941 43 TKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGE-RMEESEVNEVLQDC 94 (110)
Q Consensus 43 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~-~~~~~e~~~~~~~~ 94 (110)
....+.++...+|..+= +|.++..++..+|..+-. ..|.+|+.-+.+.+
T Consensus 13 g~~Lt~~Ea~~~~~~il---~g~~~~~q~~AfL~alr~kget~~El~g~~~a~ 62 (339)
T PRK00188 13 GEDLSEEEAEELMDAIM---SGEATPAQIAAFLTALRVKGETVDEIAGAARAM 62 (339)
T ss_pred CCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33444555555555553 345666666666665421 14666665555533
No 267
>PF14164 YqzH: YqzH-like protein
Probab=26.57 E-value=1e+02 Score=15.89 Aligned_cols=42 Identities=14% Similarity=0.381 Sum_probs=27.6
Q ss_pred HHHHHHhhcCC-CCCceeHHHHHHHHHHhC---CCCCHHHHHHHHH
Q psy10941 51 FLECLKLYDKQ-EDGTMLGAELHHILISLG---ERMEESEVNEVLQ 92 (110)
Q Consensus 51 ~~~~F~~~D~~-~~g~i~~~e~~~~l~~~g---~~~~~~e~~~~~~ 92 (110)
+.++|+.+..+ ..-.++..|++.+...+. ..-++.++.++++
T Consensus 10 i~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVe 55 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVE 55 (64)
T ss_pred HHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 45688999777 677888888887777642 2234445555444
No 268
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=26.51 E-value=2.3e+02 Score=19.81 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=19.9
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCC
Q psy10941 5 FDIYDTEGNGQIDAVDLGRVLYALNLN 31 (110)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~ 31 (110)
|++.+.+..+.++..+..++|..+|.+
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~ 157 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLP 157 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCC
Confidence 455555545678899999999988764
No 269
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=26.44 E-value=41 Score=16.35 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=16.8
Q ss_pred HHHhhcCCCCCceeHHHHHHHHH
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILI 76 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~ 76 (110)
+|..+.+.|++.+|.+|+...+.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTST
T ss_pred cHHHHHHcCCCCCCHHHHHHHcC
Confidence 56777666778999999887665
No 270
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=26.20 E-value=1.3e+02 Score=16.96 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=23.2
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 62 EDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 62 ~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..-.+|.+++..++...|..+.+.-+..+.+.+
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 334678888888888888777776666665554
No 271
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=26.17 E-value=76 Score=19.35 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=26.5
Q ss_pred eeH-HHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCCCc
Q psy10941 66 MLG-AELHHILISLGERMEESEVNEVLQDCLDAEDEDGF 103 (110)
Q Consensus 66 i~~-~e~~~~l~~~g~~~~~~e~~~~~~~~~~d~~~~g~ 103 (110)
|.. .+..+++..+-..++.++.+.++..+....|.+|.
T Consensus 61 l~~~~~~~~flk~i~e~l~~ed~~~l~~~le~rvD~~g~ 99 (149)
T COG1325 61 LERSREARKFLKKLRELLGEEDREYLLETLEERVDENGV 99 (149)
T ss_pred ecCcHHHHHHHHHHHHhcChHHHHHHHHhhHhccCCCce
Confidence 444 67888888887788888888888876333455554
No 272
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=25.82 E-value=1.8e+02 Score=18.22 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=29.4
Q ss_pred cCCCCCceeHHHHHHHHHHh--CCCCCHHHHHHHHHhc
Q psy10941 59 DKQEDGTMLGAELHHILISL--GERMEESEVNEVLQDC 94 (110)
Q Consensus 59 D~~~~g~i~~~e~~~~l~~~--g~~~~~~e~~~~~~~~ 94 (110)
.++-..++|+++|...++.. |..++++.+..++...
T Consensus 143 n~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 180 (185)
T cd00171 143 NPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSI 180 (185)
T ss_pred CcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence 44556689999999999876 4579999999999876
No 273
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.80 E-value=1.4e+02 Score=17.16 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.9
Q ss_pred CCHHHHHHHH
Q psy10941 82 MEESEVNEVL 91 (110)
Q Consensus 82 ~~~~e~~~~~ 91 (110)
++++++-.++
T Consensus 111 i~peeA~~~L 120 (122)
T COG3877 111 ISPEEAIKML 120 (122)
T ss_pred CCHHHHHHHh
Confidence 4555554443
No 274
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=25.68 E-value=2.1e+02 Score=18.98 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=10.4
Q ss_pred HHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 55 LKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 55 F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
|..+...|. .++.+++..++..+
T Consensus 33 ~~~L~~~Gk-iLeg~~Ld~aL~~~ 55 (256)
T PF14932_consen 33 FEELQKSGK-ILEGEALDEALKTI 55 (256)
T ss_pred HHHHHHcCC-cCCHHHHHHHHHHc
Confidence 444443444 44445554444443
No 275
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=25.57 E-value=1e+02 Score=15.32 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 68 GAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 68 ~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
..|+..+...+| +|++++...+...
T Consensus 20 ~~ev~ywa~~~g--vt~~~L~~AV~~v 44 (57)
T PF12244_consen 20 PYEVRYWAKRFG--VTEEQLREAVRAV 44 (57)
T ss_pred HHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 456777777777 7888888877776
No 276
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=25.32 E-value=1.2e+02 Score=16.01 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=16.3
Q ss_pred ceeHHHHHHHHHHh-CCCCCHHHHHHHHH
Q psy10941 65 TMLGAELHHILISL-GERMEESEVNEVLQ 92 (110)
Q Consensus 65 ~i~~~e~~~~l~~~-g~~~~~~e~~~~~~ 92 (110)
.|+..|+..+-+.+ ..-+|.++++.+..
T Consensus 28 ~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCd 56 (71)
T PF04282_consen 28 DVSASEISAAEQELIQEGMPVEEIQKLCD 56 (71)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHhH
Confidence 36666666555543 12277777776654
No 277
>KOG2351|consensus
Probab=25.10 E-value=1.1e+02 Score=18.15 Aligned_cols=26 Identities=23% Similarity=0.532 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 69 AELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 69 ~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+|-+.++.+++.++.+++++.+++.+
T Consensus 102 EEAkaLvPSL~nkidD~~le~iL~dl 127 (134)
T KOG2351|consen 102 EEAKALVPSLENKIDDDELEQILKDL 127 (134)
T ss_pred HHHHHhccccccccCHHHHHHHHHHH
Confidence 44444555566677777777777655
No 278
>KOG4286|consensus
Probab=25.07 E-value=98 Score=24.31 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=29.3
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 40 (110)
.+++.||+..+|.|..-+|+..+-.+...+..+.+.-+
T Consensus 474 ~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~yl 511 (966)
T KOG4286|consen 474 WLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYL 511 (966)
T ss_pred HHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHH
Confidence 35789999999999999999888777655555555543
No 279
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=25.07 E-value=1.4e+02 Score=16.87 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=6.0
Q ss_pred CceeHHHHHHHHHHh
Q psy10941 64 GTMLGAELHHILISL 78 (110)
Q Consensus 64 g~i~~~e~~~~l~~~ 78 (110)
|.++..+++.+....
T Consensus 63 ~~~~~~~i~~~r~~~ 77 (127)
T TIGR03830 63 GLLTPPEIRRIRKKL 77 (127)
T ss_pred CCcCHHHHHHHHHHc
Confidence 334444444443333
No 280
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=25.06 E-value=1.8e+02 Score=21.32 Aligned_cols=35 Identities=9% Similarity=0.162 Sum_probs=28.7
Q ss_pred CCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 60 KQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 60 ~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+.+.-.++.++++++..-....++++|.+.+.+.+
T Consensus 383 ~~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 383 TSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred ccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 33445799999999999888889999998887765
No 281
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=24.97 E-value=88 Score=17.49 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=4.0
Q ss_pred CCHHHHHH
Q psy10941 82 MEESEVNE 89 (110)
Q Consensus 82 ~~~~e~~~ 89 (110)
+|+.|+..
T Consensus 56 ~tQrEIa~ 63 (94)
T TIGR01321 56 MSQREIAS 63 (94)
T ss_pred CCHHHHHH
Confidence 45555444
No 282
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.96 E-value=2.8e+02 Score=20.32 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=51.7
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHhCC-C-C-------CcHHHHH---HHHHhh---cCCCCCceeHHHHHHHHHH
Q psy10941 13 NGQIDAVDLGRVLYALNLNPTLATIEKLGGT-K-K-------KVYEDFL---ECLKLY---DKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 13 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~-~-------~~~~~~~---~~F~~~---D~~~~g~i~~~e~~~~l~~ 77 (110)
.|..+.++|..-|..+...-+-..+..++-. . . .+.+.+. .+...+ ...+...|..+..+.+...
T Consensus 324 ~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii~~SR~rRIA~G 403 (451)
T COG0541 324 KGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMGMKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDIINASRKRRIARG 403 (451)
T ss_pred hCCCCHHHHHHHHHHHHccCCHHHHHHhCCCCCCCCchhhhhccHHHHHHHHHHHHcCCHHHhhCccccChHHHHHHHhc
Confidence 5889999999999887665566665555421 1 1 1223333 233333 3456777888888888776
Q ss_pred hCCCCCHHHHHHHHHhc
Q psy10941 78 LGERMEESEVNEVLQDC 94 (110)
Q Consensus 78 ~g~~~~~~e~~~~~~~~ 94 (110)
.| .+.+++..+++.|
T Consensus 404 SG--~sv~dVn~Llkq~ 418 (451)
T COG0541 404 SG--TSVQDVNKLLKQF 418 (451)
T ss_pred CC--CCHHHHHHHHHHH
Confidence 66 7788887777766
No 283
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.83 E-value=2.5e+02 Score=19.73 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH
Q psy10941 19 VDLGRVLYALNLNPTLATIEKL 40 (110)
Q Consensus 19 ~e~~~~l~~~~~~~~~~~~~~~ 40 (110)
.-++..+..+|+.++.+++..+
T Consensus 323 ~~v~~~l~~~g~~~~~~~~~~~ 344 (378)
T PRK11858 323 HALKNKLKEYGIELSREELCEL 344 (378)
T ss_pred HHHHHHHHHcCCCCCHHHHHHH
Confidence 4456666777777777666655
No 284
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=24.77 E-value=1.2e+02 Score=16.04 Aligned_cols=35 Identities=23% Similarity=0.018 Sum_probs=18.5
Q ss_pred hCCCCCcHHHHHHHHHhhcCC-CCCceeHHHHHHHH
Q psy10941 41 GGTKKKVYEDFLECLKLYDKQ-EDGTMLGAELHHIL 75 (110)
Q Consensus 41 ~~~~~~~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l 75 (110)
+...+.+.+.+.+++...+.. --|.++.+++.+++
T Consensus 51 L~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 51 LIGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HTTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 333334444455556666443 34567777776654
No 285
>PF09687 PRESAN: Plasmodium RESA N-terminal; InterPro: IPR019111 The short, four-helical domain first identified in the Plasmodium export proteins PHISTa and PHISTc [] has been extended to become this six-helical PRESAC domain identified in the P. falciparum-specific RESA-type (Ring-infected erythrocyte surface antigen) proteins in association with the DnaJ domain. Overall, at least 67 proteins have been detected in P. falciparum with complete copies of the PRESAC domain. No versions of this domain were detected in other apicomplexan genera, suggesting that the domain was 'invented' after the divergence of the lineage leading to the genus Plasmodium undergoing a dramatic proliferation only in P. falciparum. A secondary structure-prediction derived from the multiple alignment of the PRESAC family reveals that it is composed of an all-helical fold with six conserved helical segments. There is some evidence it might localise to membranes [].
Probab=24.72 E-value=1.4e+02 Score=16.71 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=19.0
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 66 MLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 66 i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
++..++...+..++..++..++-.++..+
T Consensus 6 lt~~ei~~~i~~l~~~~~k~~m~~iw~~~ 34 (129)
T PF09687_consen 6 LTDEEINKKINSLGEFVSKKDMYNIWNQV 34 (129)
T ss_pred hhHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 45566777777777666777766666554
No 286
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=24.56 E-value=1.4e+02 Score=16.78 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=12.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10941 69 AELHHILISLGERMEESEVNEVLQD 93 (110)
Q Consensus 69 ~e~~~~l~~~g~~~~~~e~~~~~~~ 93 (110)
.|+..++..+...+++++++.+++.
T Consensus 88 ~El~~ii~~~~~r~~ee~l~~iL~~ 112 (117)
T PF03874_consen 88 VELRAIIESLESRFSEEDLEEILDL 112 (117)
T ss_dssp HHHHHHSTTGTTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3444444444445566666665543
No 287
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=24.46 E-value=79 Score=16.06 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=15.8
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHH
Q psy10941 3 FAFDIYDTEGNGQIDAVDLGRVLY 26 (110)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~ 26 (110)
.+|.+| ..++|.|+..++...|.
T Consensus 11 kA~e~y-~~~~g~i~lkdIA~~Lg 33 (60)
T PF10668_consen 11 KAFEIY-KESNGKIKLKDIAEKLG 33 (60)
T ss_pred HHHHHH-HHhCCCccHHHHHHHHC
Confidence 456666 34678888888876654
No 288
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=24.41 E-value=1.4e+02 Score=16.57 Aligned_cols=63 Identities=19% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCC---CCHHHHHHHhCCCCCc--HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCC
Q psy10941 19 VDLGRVLYALNLN---PTLATIEKLGGTKKKV--YEDFLECLKLYDKQEDGTMLGAELHHILISLGER 81 (110)
Q Consensus 19 ~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~ 81 (110)
.+.+.+-+.+|.. +++..+..+-.+...+ .+.....++.+-....-.-+...+..+|...+..
T Consensus 14 r~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~ 81 (90)
T cd08780 14 KKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLT 81 (90)
T ss_pred HHHHHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccch
Confidence 4677788888855 7888888875443322 4445555555544433347777788887776643
No 289
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=24.21 E-value=1.5e+02 Score=17.03 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=26.6
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 65 TMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 65 ~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.|+-+.+..++...|..+.+.-++.++..+
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaL 45 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAAL 45 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHh
Confidence 789999999999999888888888888877
No 290
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=24.20 E-value=2.5e+02 Score=19.59 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH
Q psy10941 19 VDLGRVLYALNLNPTLATIEKL 40 (110)
Q Consensus 19 ~e~~~~l~~~~~~~~~~~~~~~ 40 (110)
.-++..|..+|+.++.+++..+
T Consensus 320 ~~i~~~l~~~g~~~~~~~~~~~ 341 (365)
T TIGR02660 320 AALINALAQLGIPLSEEEAAAL 341 (365)
T ss_pred HHHHHHHHHcCCCCCHHHHHHH
Confidence 4456667788888888777765
No 291
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=24.16 E-value=1.5e+02 Score=16.70 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhc
Q psy10941 16 IDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL-GERMEESEVNEVLQDC 94 (110)
Q Consensus 16 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-g~~~~~~e~~~~~~~~ 94 (110)
|...+..-+|.-+.-.++++++.++ -..+-..+....+..++...+... +..-++++++.+-.++
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~V--------------a~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEV--------------AAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHH--------------HHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHH--------------HHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 3444444444444445555555544 555555666666888888888875 4446788888877765
No 292
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=24.10 E-value=3.6e+02 Score=21.17 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=40.7
Q ss_pred ccHHHHHHHH----HHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH
Q psy10941 16 IDAVDLGRVL----YALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVL 91 (110)
Q Consensus 16 i~~~e~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~ 91 (110)
++..++...| ..-|..++..-+..+......+...........-.-+.|.|+.+.+..++... ....+-.++
T Consensus 178 Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~----d~~~If~Ll 253 (709)
T PRK08691 178 MTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAV----DKQYLYELL 253 (709)
T ss_pred CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHccc----CHHHHHHHH
Confidence 4455544444 44566777777766664444454444444433222256788877777776432 344455555
Q ss_pred Hhc
Q psy10941 92 QDC 94 (110)
Q Consensus 92 ~~~ 94 (110)
..+
T Consensus 254 dAL 256 (709)
T PRK08691 254 TGI 256 (709)
T ss_pred HHH
Confidence 544
No 293
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=23.64 E-value=1.3e+02 Score=15.87 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCCCCCH-HHHHHHHHhc
Q psy10941 69 AELHHILISLGERMEE-SEVNEVLQDC 94 (110)
Q Consensus 69 ~e~~~~l~~~g~~~~~-~e~~~~~~~~ 94 (110)
+-+.+++..+...+++ .|+..+...+
T Consensus 17 eTLEkv~e~~~y~L~~~~e~~~f~~Aa 43 (71)
T PRK10391 17 ESLEKLFDHLNYTLTDDQEIINMYRAA 43 (71)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 3344444444444443 4444444433
No 294
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=23.61 E-value=90 Score=19.96 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=19.8
Q ss_pred HHhhcCCCCCceeHHHHHHHHHHh
Q psy10941 55 LKLYDKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 55 F~~~D~~~~g~i~~~e~~~~l~~~ 78 (110)
..-+|.+++|.++.+|+..+...+
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 456789999999999999887754
No 295
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=23.57 E-value=1.9e+02 Score=17.84 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=12.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHH
Q psy10941 69 AELHHILISLGERMEESEVNEV 90 (110)
Q Consensus 69 ~e~~~~l~~~g~~~~~~e~~~~ 90 (110)
+.=..++..+| ++++++..+
T Consensus 148 ~~h~~~l~~~g--~~~~~~~~i 167 (172)
T cd04790 148 EAHQEFLQSLG--IPEDEIERI 167 (172)
T ss_pred HHHHHHHHHcC--CCHHHHHHH
Confidence 34446677777 677776554
No 296
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=23.36 E-value=76 Score=17.80 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=10.8
Q ss_pred CCCcccHHHHHHHHHHcC
Q psy10941 12 GNGQIDAVDLGRVLYALN 29 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~ 29 (110)
.+|.|+..+|.+.|.+++
T Consensus 3 ~d~~~~~~~F~~~W~sl~ 20 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLP 20 (114)
T ss_dssp TT----HHHHHHHHHHS-
T ss_pred CCCccCHHHHHHHHHhCC
Confidence 368899999999998764
No 297
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=23.34 E-value=51 Score=17.59 Aligned_cols=37 Identities=8% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+...+-.+..+.++.++.+..+. | .....+..+++.+
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~--~--~d~~~~~ri~~FL 78 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIK--G--IDVNKIRRIYDFL 78 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTT--S--SSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHcc--c--cCHHHHHHHHHHH
Confidence 45555667888999999988776 2 4555666666555
No 298
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.12 E-value=1.8e+02 Score=17.27 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHH
Q psy10941 21 LGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEV 87 (110)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~ 87 (110)
+.+.|+.-|+.++..... +++.+-....+.+|.+++...+..-+..++..-+
T Consensus 4 ~~~~l~~~glr~T~qR~~---------------Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTV 55 (148)
T PRK09462 4 NNTALKKAGLKVTLPRLK---------------ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATV 55 (148)
T ss_pred HHHHHHHcCCCCCHHHHH---------------HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHH
Confidence 455666667766666533 2344433345577888888777776655555443
No 299
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=23.07 E-value=2e+02 Score=18.00 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHhC------CC--CCcHHHHHHHHHhhcCCCC
Q psy10941 16 IDAVDLGRVLYALNLNPTLATIEKLGG------TK--KKVYEDFLECLKLYDKQED 63 (110)
Q Consensus 16 i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~F~~~D~~~~ 63 (110)
++.++.++-|++-|...+..+...++. .+ ...+..+.+.-+.||++++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~y~~~~~iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAMYTNIQGIKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCceeehHHHHHHHHHhcCCCCc
Confidence 556778888888888888887766541 11 1245556677788877664
No 300
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=22.89 E-value=1.2e+02 Score=15.43 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=10.8
Q ss_pred hCCCCCHHHHHHHHHhc
Q psy10941 78 LGERMEESEVNEVLQDC 94 (110)
Q Consensus 78 ~g~~~~~~e~~~~~~~~ 94 (110)
+|..++.+++..+++.+
T Consensus 15 lG~~i~~~~i~~~L~~l 31 (70)
T PF03484_consen 15 LGIDISPEEIIKILKRL 31 (70)
T ss_dssp HTS---HHHHHHHHHHT
T ss_pred hCCCCCHHHHHHHHHHC
Confidence 46778888888888877
No 301
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=22.84 E-value=1.6e+02 Score=17.68 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=25.2
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHh
Q psy10941 12 GNGQIDAVDLGRVLYALNLNPTLATIEKLG 41 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 41 (110)
++...+..|+...|+..|..++...+...+
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL 42 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDL 42 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 456689999999999999999999887654
No 302
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.81 E-value=49 Score=18.31 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=15.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHH
Q psy10941 12 GNGQIDAVDLGRVLYALNLNPTLAT 36 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~~~~~~ 36 (110)
++..-+..++.+-|+.+|+..+.++
T Consensus 38 Nns~~s~~~~~~~L~~~Gi~~~~~~ 62 (101)
T PF13344_consen 38 NNSSRSREEYAKKLKKLGIPVDEDE 62 (101)
T ss_dssp S-SSS-HHHHHHHHHHTTTT--GGG
T ss_pred CCCCCCHHHHHHHHHhcCcCCCcCE
Confidence 3556777888888888888765543
No 303
>PF14178 YppF: YppF-like protein
Probab=22.80 E-value=85 Score=15.98 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=10.7
Q ss_pred CcccHHHHHHHHHHc
Q psy10941 14 GQIDAVDLGRVLYAL 28 (110)
Q Consensus 14 g~i~~~e~~~~l~~~ 28 (110)
|.|+..+.+.+++.+
T Consensus 35 gei~i~eYR~lvreL 49 (60)
T PF14178_consen 35 GEISINEYRNLVREL 49 (60)
T ss_pred CcccHHHHHHHHHHH
Confidence 677777777777654
No 304
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.79 E-value=2.7e+02 Score=19.32 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=22.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHh
Q psy10941 15 QIDAVDLGRVLYALNLNPTLATIEKLG 41 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~ 41 (110)
..|...+.+.|...|+.++...+..++
T Consensus 24 ~~S~~~la~~L~~~G~~vS~~tV~~lL 50 (311)
T PF07592_consen 24 RKSTRKLAEELRRQGHPVSARTVARLL 50 (311)
T ss_pred eccHHHHHHHHHHcCCCccHHHHHHHH
Confidence 367788888888889998888888876
No 305
>PRK07914 hypothetical protein; Reviewed
Probab=22.73 E-value=2.5e+02 Score=19.00 Aligned_cols=54 Identities=9% Similarity=0.053 Sum_probs=27.3
Q ss_pred HHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q psy10941 23 RVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILI 76 (110)
Q Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~ 76 (110)
+.++..|..++..-+..++.....+...+....+.+-....|.|+.+.+..++.
T Consensus 139 ~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~ 192 (320)
T PRK07914 139 KEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcC
Confidence 334455666666666555543333333333333333222235677777776654
No 306
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=22.67 E-value=1.5e+02 Score=16.35 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=32.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCH-HHHHHHhCCCCCcHHHHHH----HHHhhcCCCCCceeHHHHHHHH
Q psy10941 12 GNGQIDAVDLGRVLYALNLNPTL-ATIEKLGGTKKKVYEDFLE----CLKLYDKQEDGTMLGAELHHIL 75 (110)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~F~~~D~~~~g~i~~~e~~~~l 75 (110)
.|+.++..++...+. +.... ..+...+....++-..+.+ +...-|.++.-.|+...+..++
T Consensus 28 ~Na~l~~~~l~~~~~---l~~~~~~~l~~~~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl 93 (96)
T PF13335_consen 28 CNAQLPGEELRKYCP---LSSEAKKLLEQAAEKLNLSARGYHRILRVARTIADLEGSERITREHIAEAL 93 (96)
T ss_pred ccccCCHHHHHhHcC---CCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHH
Confidence 467888888877642 21111 1233334444444433333 3344477777777777776665
No 307
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=22.53 E-value=1.3e+02 Score=15.38 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCC
Q psy10941 19 VDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGE 80 (110)
Q Consensus 19 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~ 80 (110)
.+.+.+-+.+| ++..++..+-.......+....++...-......-+...+..+|..++.
T Consensus 11 ~~W~~la~~Lg--l~~~~I~~i~~~~~~~~~~~~~mL~~W~~~~~~~at~~~L~~aL~~~~~ 70 (79)
T cd01670 11 KDWKKLARKLG--LSDGEIDQIEEDNPRVREQAYQLLLKWEEREGDNATVGNLIEALREIGR 70 (79)
T ss_pred hHHHHHHHHhC--CCHHHHHHHHHhCCCHHHHHHHHHHHHHhccCcCcHHHHHHHHHHHcCH
Confidence 45566666666 5677777665333323444444555443333335667888888887764
No 308
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=22.31 E-value=2.9e+02 Score=20.62 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=37.6
Q ss_pred CcccHHHHHHHHHHc----CCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q psy10941 14 GQIDAVDLGRVLYAL----NLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS 77 (110)
Q Consensus 14 g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 77 (110)
-+|+..++...|..+ +....+.-+..+......+..+-...+..+-.-++|.|+.+....++..
T Consensus 176 kri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~ 243 (515)
T COG2812 176 KRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGL 243 (515)
T ss_pred cCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCC
Confidence 346777776666654 4555555555554333334444444555554555688888888877654
No 309
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=22.18 E-value=1.4e+02 Score=18.63 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=21.5
Q ss_pred cCCCCCceeHHHHHHHHHHh--CCCCCHHHHHHHHHhc
Q psy10941 59 DKQEDGTMLGAELHHILISL--GERMEESEVNEVLQDC 94 (110)
Q Consensus 59 D~~~~g~i~~~e~~~~l~~~--g~~~~~~e~~~~~~~~ 94 (110)
.++-.-+++.++|...++.. +..++++.+..++...
T Consensus 148 n~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 185 (190)
T PF01369_consen 148 NPNIKKKMTKEDFIKNTRGIDDGKDIPEEFLESIYDSI 185 (190)
T ss_dssp -TTSSSS--HHHHHHHTTTTBTTBS--HHHHHHHHHHH
T ss_pred hhccccCCcHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Confidence 33434568888888888864 5568888888877764
No 310
>PF11236 DUF3037: Protein of unknown function (DUF3037); InterPro: IPR021398 This bacterial family of proteins has no known function.
Probab=21.89 E-value=74 Score=18.32 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 46 KVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 46 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+......+.|+.+...+++.|..++..-.+.. =++++++.+|..+
T Consensus 73 ~~~~~~~~~f~~lt~~rstviq~s~~~~~l~~----dp~~~L~~L~~~~ 117 (118)
T PF11236_consen 73 IAQLDIAERFRWLTAPRSTVIQFSPVHPGLTD----DPEATLERLFDRY 117 (118)
T ss_pred cCcccHHHHHHHhhhcccCcEEECCCceEeeC----CHHHHHHHHHHHh
Confidence 34444556677777677776666555544332 2456677777664
No 311
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=21.83 E-value=1.7e+02 Score=16.75 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10941 69 AELHHILISLGERMEESEVNEVLQD 93 (110)
Q Consensus 69 ~e~~~~l~~~g~~~~~~e~~~~~~~ 93 (110)
.+...++..+...+++++++.++..
T Consensus 86 ~E~~~lI~sl~~r~~ee~l~~iL~~ 110 (118)
T smart00657 86 EEAQLLIPSLEERIDEEELEELLDD 110 (118)
T ss_pred HHHHHHhhhhhccCCHHHHHHHHHH
Confidence 3444444444444555555555544
No 312
>PF02437 Ski_Sno: SKI/SNO/DAC family; InterPro: IPR003380 The c-ski proto-oncogene has been shown to influence proliferation, morphological transformation and myogenic differentiation []. It may play a role in terminal differentiation of skeletal muscle cells but not in the determination of cells to the myogenic lineage. Sno, a Ski proto-oncogene homologue, is expressed in two isoforms and plays a role in the response to proliferation stimuli.; GO: 0005634 nucleus; PDB: 1L8R_B 3EQ5_F 1SBX_A.
Probab=21.68 E-value=1.8e+02 Score=16.89 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHcCCCC---CHHHHHHHhCCCCCcHHHHHHHHHhh--cCCCCCceeHHHHHHHHHHh
Q psy10941 16 IDAVDLGRVLYALNLNP---TLATIEKLGGTKKKVYEDFLECLKLY--DKQEDGTMLGAELHHILISL 78 (110)
Q Consensus 16 i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~F~~~--D~~~~g~i~~~e~~~~l~~~ 78 (110)
++..++.+.+..++... +.++++.+ +.-..+ ..++.|-|+++|+..++..+
T Consensus 56 ~~~~~I~~~~~~L~I~~~~Ct~eQL~~L------------k~~gaip~~~~~C~LItk~DaerL~~~~ 111 (114)
T PF02437_consen 56 FSLHTINTKCKRLQIYCSRCTPEQLRIL------------KGLGAIPPSANRCGLITKTDAERLCKSC 111 (114)
T ss_dssp SHHHHHHHHHHHTT---EE--HHHHHHH------------HHTTSS-TT----EEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcceeEeeCCHHHHHHH------------HhcCCCCCCCCcccceeHHHHHHHHHHH
Confidence 36778888888887765 33444332 122222 34577888888888887653
No 313
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=21.68 E-value=2.4e+02 Score=18.34 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=21.8
Q ss_pred hcCCCCCceeHHHHHHHHHHh------------CCCCCHHHHHHHHHh
Q psy10941 58 YDKQEDGTMLGAELHHILISL------------GERMEESEVNEVLQD 93 (110)
Q Consensus 58 ~D~~~~g~i~~~e~~~~l~~~------------g~~~~~~e~~~~~~~ 93 (110)
+-.-+.|.|+.++|..++..+ .+.++.++++++...
T Consensus 34 ~kdak~G~Id~~e~kkav~~liEAde~lYksaP~H~L~~E~AkeFck~ 81 (215)
T PF09873_consen 34 YKDAKPGKIDVEEFKKAVYSLIEADEYLYKSAPSHELNGEEAKEFCKL 81 (215)
T ss_pred ccCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCcccccHhHHHHHHHH
Confidence 334567888888887777654 123566665555443
No 314
>PLN02223 phosphoinositide phospholipase C
Probab=21.65 E-value=3.6e+02 Score=20.34 Aligned_cols=45 Identities=4% Similarity=-0.047 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHH---HHh-C-CCCCHHHHHHHHHhc
Q psy10941 49 EDFLECLKLYDKQEDGTMLGAELHHIL---ISL-G-ERMEESEVNEVLQDC 94 (110)
Q Consensus 49 ~~~~~~F~~~D~~~~g~i~~~e~~~~l---~~~-g-~~~~~~e~~~~~~~~ 94 (110)
+++.++|..+. .+.|.++.+.+...+ ... | ...+.++++.++..+
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~ 65 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAEL 65 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 44556688885 778899999999888 332 3 246777788887766
No 315
>PRK05439 pantothenate kinase; Provisional
Probab=21.23 E-value=2.4e+02 Score=19.42 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q psy10941 15 QIDAVDLGRVLYALNLNPTLATIEKL 40 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 40 (110)
.++..+..++-......++.+++..+
T Consensus 12 ~~~r~~w~~l~~~~~~~l~~~~~~~l 37 (311)
T PRK05439 12 EFSREQWAALRDSTPLTLTEEELERL 37 (311)
T ss_pred eECHHHHHHHHhcCCCCCCHHHHHHh
Confidence 46667777777777788888888876
No 316
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=21.07 E-value=2.3e+02 Score=21.27 Aligned_cols=58 Identities=12% Similarity=0.207 Sum_probs=31.4
Q ss_pred cCCCCCHHHHHHHhCCCCCcHHHHHHHHHhhcCCCCCcee-HHHHHHHHHHhCCCCCHHHHHHH
Q psy10941 28 LNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTML-GAELHHILISLGERMEESEVNEV 90 (110)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~-~~e~~~~l~~~g~~~~~~e~~~~ 90 (110)
+|+.|..+.+. +....++.+++.++|.. +-.|... .+.+.+++..+|.+++++..+++
T Consensus 541 IG~iP~~edL~--~~Gld~s~ed~~~~f~i---d~~~w~~e~~~I~e~~~~~g~~iP~~l~~e~ 599 (608)
T COG1274 541 IGYIPKYEDLN--LDGLDYSKEDVEKLFTI---DAEGWLAEIERIWEYYSFFGNKIPEELLDEL 599 (608)
T ss_pred cccccchhhcc--cccccCCHHHHHHHhCc---CHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 34444444444 33444555666655543 2223222 34556677778888888766554
No 317
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=21.01 E-value=2.8e+02 Score=18.76 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=34.0
Q ss_pred HHHHHHHcCCC----CCHHHHHHHh--CCCCCcHHHHH------------HHHHhhcCCCCCceeHHH---HHHHHHHhC
Q psy10941 21 LGRVLYALNLN----PTLATIEKLG--GTKKKVYEDFL------------ECLKLYDKQEDGTMLGAE---LHHILISLG 79 (110)
Q Consensus 21 ~~~~l~~~~~~----~~~~~~~~~~--~~~~~~~~~~~------------~~F~~~D~~~~g~i~~~e---~~~~l~~~g 79 (110)
+.+.|..+|+. ++.+.+..+. .-..++|+.+- .+|+++=..+.|-.+.+- |..+|+.+|
T Consensus 5 l~~YL~RIg~~~~~~~~l~~L~~L~~~Hl~~iPFENldv~~g~~i~ld~~~l~~KlV~~~RGGyCfE~N~Lf~~~L~~LG 84 (281)
T PRK15047 5 LNAYFARINWSGAAAVNIDTLRALHLKHNCTIPFENLDVLLPREIQLDDQSLEEKLVIARRGGYCFEQNGLFERVLRELG 84 (281)
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHhhhcCCccCchhhcCCCCCCCHHHHHHHHhcCCCCEEcHhHHHHHHHHHHHcC
Confidence 56666666654 4444454443 11223333321 456666666677666654 667777777
Q ss_pred CCC
Q psy10941 80 ERM 82 (110)
Q Consensus 80 ~~~ 82 (110)
..+
T Consensus 85 F~v 87 (281)
T PRK15047 85 FNV 87 (281)
T ss_pred CcE
Confidence 653
No 318
>PRK10788 periplasmic folding chaperone; Provisional
Probab=20.90 E-value=3.7e+02 Score=20.25 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=11.5
Q ss_pred HHHcCCCCCHHHHHHHh
Q psy10941 25 LYALNLNPTLATIEKLG 41 (110)
Q Consensus 25 l~~~~~~~~~~~~~~~~ 41 (110)
...+|+.++..++...+
T Consensus 105 A~~lgi~vsd~ev~~~I 121 (623)
T PRK10788 105 ARELGLGISDEQVKQAI 121 (623)
T ss_pred HHHcCCCcCHHHHHHHH
Confidence 33567778887777665
No 319
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.88 E-value=1.2e+02 Score=14.36 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHHcCCCC
Q psy10941 15 QIDAVDLGRVLYALNLNP 32 (110)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~ 32 (110)
.+|-.|+++-|.+.|.++
T Consensus 5 ~LSd~eL~~~L~~~G~~~ 22 (44)
T smart00540 5 RLSDAELRAELKQYGLPP 22 (44)
T ss_pred HcCHHHHHHHHHHcCCCC
Confidence 366688888888888764
No 320
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=20.77 E-value=3e+02 Score=19.02 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=6.1
Q ss_pred CceeHHHHHHHHHH
Q psy10941 64 GTMLGAELHHILIS 77 (110)
Q Consensus 64 g~i~~~e~~~~l~~ 77 (110)
|.++..++..+|..
T Consensus 25 g~~~~~q~~AfL~a 38 (330)
T TIGR01245 25 GEASPAQIAAILAA 38 (330)
T ss_pred CCCCHHHHHHHHHH
Confidence 34444444444443
No 321
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=20.76 E-value=1.2e+02 Score=14.31 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=19.8
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy10941 63 DGTMLGAELHHILISLGERMEESEVNEVLQD 93 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~ 93 (110)
+.+.+..++..+...+| ++...+..-|..
T Consensus 22 ~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 22 NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 44677777777777777 677777766653
No 322
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=20.63 E-value=67 Score=16.17 Aligned_cols=26 Identities=8% Similarity=0.173 Sum_probs=11.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 69 AELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 69 ~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+-+..+...+...++..|+..+...+
T Consensus 10 dtLEkv~e~~~~~L~~~e~~~f~~Aa 35 (57)
T PF05321_consen 10 DTLEKVIEHNRYKLTDDELEAFNSAA 35 (57)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred hhHHHHHHHhhCcCCHHHHHHHHHHH
Confidence 33444444444445555555554443
No 323
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=20.61 E-value=1.1e+02 Score=13.99 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHcCCCCCHHHHHHHhCCC
Q psy10941 23 RVLYALNLNPTLATIEKLGGTK 44 (110)
Q Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~ 44 (110)
.+|...+...+..++..++..+
T Consensus 5 ~~L~~~~~~~sr~~a~~~I~~g 26 (48)
T PF01479_consen 5 KFLSRLGLASSRSEARRLIKQG 26 (48)
T ss_dssp HHHHHTTSSSSHHHHHHHHHTT
T ss_pred HHHHHcCCcCCHHHHHHhcCCC
Confidence 4566677777777777776433
No 324
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=20.46 E-value=1.5e+02 Score=15.41 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=29.2
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
+|-.+=....+.|....+..++..+| +++.-+..-+.++
T Consensus 9 l~Gdy~~~~g~~i~~~~Li~ll~~~G--v~e~avR~alsRl 47 (70)
T PF07848_consen 9 LLGDYLRPRGGWIWVASLIRLLAAFG--VSESAVRTALSRL 47 (70)
T ss_dssp HHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHH
T ss_pred HHHHHhccCCCceeHHHHHHHHHHcC--CChHHHHHHHHHH
Confidence 45555667789999999999999999 7888888877766
No 325
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=20.45 E-value=1.6e+02 Score=15.86 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=19.2
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 63 DGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 63 ~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
.|.++..++..-+. .|+.-++.|++++
T Consensus 14 ~gr~s~~~Ls~~~~-----~p~~~VeaMLe~l 40 (78)
T PRK15431 14 RGRMEAAQISQTLN-----TPQPMINAMLQQL 40 (78)
T ss_pred cCcccHHHHHHHHC-----cCHHHHHHHHHHH
Confidence 45666666665553 6888889999887
No 326
>PHA02943 hypothetical protein; Provisional
Probab=20.41 E-value=2.3e+02 Score=17.57 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 51 FLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 51 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
++++++..-..+-..|++..+..++. .+.++..+|.++
T Consensus 80 ~Relwrlv~s~~~kfi~p~~l~~li~------kd~~a~~~~ak~ 117 (165)
T PHA02943 80 KRELWRLVCNSRLKFITPSRLLRLIA------KDTEAHNIFAKY 117 (165)
T ss_pred HHHHHHHHHhccccccChHHHHHHHH------hCHHHHHHHHHh
Confidence 34566666667778899988888775 345677777776
No 327
>KOG4286|consensus
Probab=20.32 E-value=93 Score=24.41 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy10941 53 ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94 (110)
Q Consensus 53 ~~F~~~D~~~~g~i~~~e~~~~l~~~g~~~~~~e~~~~~~~~ 94 (110)
-.+..||..++|.|..-+|+-.+..++.-...+.+..+|...
T Consensus 474 ~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~v 515 (966)
T KOG4286|consen 474 WLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQV 515 (966)
T ss_pred HHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHH
Confidence 367889999999999999999998887666777788888877
No 328
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=20.31 E-value=1.2e+02 Score=22.48 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=32.9
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHh--CC-CCCHHHHHHHHHhcccCCCCCCceeeccC
Q psy10941 54 CLKLYDKQEDGTMLGAELHHILISL--GE-RMEESEVNEVLQDCLDAEDEDGFVQYAHS 109 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~l~~~--g~-~~~~~e~~~~~~~~~~d~~~~g~i~~~ef 109 (110)
-|..+|++..|.|...++-.++..- |. .-+++ ...+.. .|.+|+++|..+
T Consensus 29 ~~~dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~p~---tr~h~~---envs~~le~ik~ 81 (612)
T COG5069 29 EFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPE---TRIHVM---ENVSGRLEFIKG 81 (612)
T ss_pred HHhhhccccccHHHHHHHHHHhhhccccccCCCHH---HHHHHh---hccccceeeecc
Confidence 4778889999989888888777753 32 12222 233333 677888888764
No 329
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=20.21 E-value=1.4e+02 Score=15.02 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=12.7
Q ss_pred HHHhhcCCCCCceeHHHHHHH
Q psy10941 54 CLKLYDKQEDGTMLGAELHHI 74 (110)
Q Consensus 54 ~F~~~D~~~~g~i~~~e~~~~ 74 (110)
.+..+|...-|.-+..+|...
T Consensus 36 ~~~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 36 KYPDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp HHTT--TCCTTSSSHHHHHHT
T ss_pred HCCCCCccccCCCcHHHHHHh
Confidence 456677777777777776654
No 330
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.13 E-value=99 Score=13.29 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=6.1
Q ss_pred CCHHHHHHHHH
Q psy10941 82 MEESEVNEVLQ 92 (110)
Q Consensus 82 ~~~~e~~~~~~ 92 (110)
+|.++++.+++
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67777776664
Done!