RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10941
(110 letters)
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 51.7 bits (124), Expect = 1e-09
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIE--------------------KLG 41
K AF ++D +G+G I +LG V+ +L NPT A ++ L
Sbjct: 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLM 73
Query: 42 GTKKK---VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
K K E+ E K++D+ +G + AEL H++ +LGE++ + EV+E++++
Sbjct: 74 ARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DV 131
Query: 99 DEDGFVQYA 107
D DG + Y
Sbjct: 132 DGDGQINYE 140
Score = 31.7 bits (72), Expect = 0.032
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+F E L+DK DGT+ EL ++ SLG+ E+E LQD ++ D DG
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE----LQDMINEVDADG 60
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 51.2 bits (123), Expect = 3e-09
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 24/125 (19%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL-----GGTKKKVYEDFL------ 52
AF ++D + +G ID +LG++L +L NP+ A I KL G + + +FL
Sbjct: 25 AFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVK 84
Query: 53 -----------ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDED 101
E KL+DK DG + EL +L SLGER+ + EV ++L++ ED D
Sbjct: 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEY--DEDGD 142
Query: 102 GFVQY 106
G + Y
Sbjct: 143 GEIDY 147
Score = 26.5 bits (59), Expect = 2.2
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQ 61
+ AF ++D + +G I +L RVL +L + +EKL LK YD+
Sbjct: 95 REAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKL--------------LKEYDED 140
Query: 62 EDGT 65
DG
Sbjct: 141 GDGE 144
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 35.2 bits (82), Expect = 5e-04
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 50 DFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+ E +L+DK DGT+ EL L SLGE + E E++E++++ D D DG + +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREV-DK-DGDGKIDF 55
Score = 34.8 bits (81), Expect = 8e-04
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
+ AF ++D +G+G I A +L L +L + I+++
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEM 41
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 36.2 bits (84), Expect = 0.001
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 27/122 (22%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDFLECL-- 55
AFD++DT+G+G ID +L + +L P I+++ G+ K +E+FL+ +
Sbjct: 22 AFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81
Query: 56 ---------------KLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDE 100
+L+D + G + L + LGE + + E LQ+ +D D
Sbjct: 82 KLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEE----LQEMIDEADR 137
Query: 101 DG 102
+G
Sbjct: 138 NG 139
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 32.7 bits (75), Expect = 0.005
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 56 KLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
KL DK DG + EL +L +LG ++ + EV E+++ + D+DG
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDG 47
Score = 26.9 bits (60), Expect = 0.70
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 6 DIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGT 65
+ D +G+G ID +L ++L AL L T ++V E DK DG
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKL----------TDEEVEELIEADFNEIDKDGDGR 50
Query: 66 MLGAELHHIL 75
+ E +
Sbjct: 51 ISFEEFLEAM 60
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 29.5 bits (67), Expect = 0.042
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALN 29
+ AF ++D +G+G I A +L + L +L
Sbjct: 3 REAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 25.6 bits (57), Expect = 1.00
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 50 DFLECLKLYDKQEDGTMLGAELHHILISLG 79
+ E KL+DK DG + EL L SLG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 25.9 bits (58), Expect = 0.83
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYAL 28
K AF +D +G+G+I + +L L
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 28.2 bits (63), Expect = 0.90
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 65 TMLGA--ELHHILISLGERMEESEVNEVLQDCLDAE-DEDGFVQYAHS 109
T+ G E+ L+ L ME SE + + L DEDGF++ AH
Sbjct: 455 TLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHP 502
>gnl|CDD|180391 PRK06083, PRK06083, sulfur carrier protein ThiS; Provisional.
Length = 84
Score = 26.4 bits (58), Expect = 1.6
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 60 KQEDGTMLGAELHHILISLGERMEESEVNEVLQD 93
+ T GA + I IS+ ++ + +++ L
Sbjct: 5 RIVTCTTEGAAMVLITISINDQSIQVDISSSLAQ 38
>gnl|CDD|152775 pfam12340, DUF3638, Protein of unknown function (DUF3638). This
domain family is found in eukaryotes, and is
approximately 230 amino acids in length. There are two
conserved sequence motifs: LLE and NMG.
Length = 229
Score = 27.2 bits (61), Expect = 1.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 64 GTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
G +LG E++H+ S ESE+N Q + E G
Sbjct: 94 GGLLGREIYHLPFSRRTPTTESEINLYRQLHEECMKEGG 132
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 24.3 bits (54), Expect = 3.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYAL 28
K AF ++D +G+G+ID + +L AL
Sbjct: 3 KEAFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|212594 cd11720, FANCI, Fanconi anemia I protein. The Fanconi anemia ID
complex consists of two subunits, Fanconi anemia I and
Fanconi anemia D2 (FANCI-FANCD2) and plays a central
role in the repair of DNA interstrand cross-links
(ICLs). The complex is activated via DNA damage-induced
phosphorylation by ATR (ataxia telangiectasia and
Rad3-related) and monoubiquitination by the FA core
complex ubiquitin ligase, and it binds to DNA at the ICL
site, recognizing branched DNA structures. Defects in
the complex cause Fanconi anemia, a cancer
predisposition syndrome. The phosphorylation of FANCI
may function as a molecular switch to turn on the FA
pathway.
Length = 1202
Score = 26.1 bits (58), Expect = 4.8
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 19 VDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKL 57
D+ +VLY ++ + G + LEC
Sbjct: 796 CDITKVLYLRKISKLTELKKDFGKQ---IALLALECFLE 831
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 25.8 bits (56), Expect = 5.6
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 66 MLGAELHHILISLGERMEESEVNEVLQD 93
MLGAE+ + ++LG+R+ + +NE L+D
Sbjct: 427 MLGAEV--VEVTLGDRILKDAINEALRD 452
>gnl|CDD|107368 cd06373, PBP1_NPR_like, Ligand binding domain of natriuretic
peptide receptor (NPR) family. Ligand binding domain of
natriuretic peptide receptor (NPR) family which consists
of three different subtypes: type A natriuretic peptide
receptor (NPR-A, or GC-A), type B natriuretic peptide
receptors (NPR-B, or GC-B), and type C natriuretic
peptide receptor (NPR-C). There are three types of
natriuretic peptide (NP) ligands specific to the
receptors: atrial NP (ANP), brain or B-type NP (BNP),
and C-type NP (CNP). The NP family is thought to have
arisen through gene duplication during evolution and
plays an essential role in cardiovascular and body fluid
homeostasis. ANP and BNP bind mainly to NPR-A, while CNP
binds specifically to NPR-B. Both NPR-A and NPR-B have
guanylyl cyclase catalytic activity and produces
intracellular secondary messenger cGMP in response to
peptide-ligand binding. Consequently, the NPR-A
activation results in vasodilation and inhibition of
vascular smooth muscle cell proliferation. NPR-C acts as
the receptor for all the three members of NP family, and
functions as a clearance receptor. Unlike NPR-A and -B,
NPR-C lacks an intracellular guanylyl cyclase domain and
is thought to exert biological actions by sequestration
of released natriuretic peptides and/or inhibition of
adenylyl cyclase.
Length = 396
Score = 25.7 bits (57), Expect = 6.9
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 12/48 (25%)
Query: 2 KFAFDIYDTEGN----GQIDAVDLGRVLYALNLNPTLATIEKLGGTKK 45
KF D+ N DAV +LYAL LN TLA GG +
Sbjct: 295 KFNTTSDDSLVNFFAGAFYDAV----LLYALALNETLAE----GGDPR 334
>gnl|CDD|213033 cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-5)
methyltransferases (C5-MTases) 3 (Dnmt3). Dnmt3 is a
de novo DNA methyltransferase family that includes two
active enzymes Dnmt3a and -3b and one regulatory factor
Dnmt3l. The ADDz domain of Dnmt3 is located in the
C-terminal region of Dnmt3, which is an active
catalytic domain in Dnmt3a and -b, but lacks some
residues for enzymatic activity in Dnmt3l. DNA
methylation is an important epigenetic mechanism
involved in diverse biological processes such as
embryonic development, gene expression, and genomic
imprinting. The ADDz_Dnmt3 domain is a PHD-like zinc
finger motif that contains two parts, a C2-C2 and a
PHD-like zinc finger. PHD zinc finger domains have been
identified in more than 40 proteins that are mainly
involved in chromatin mediated transcriptional control;
the classical PHD zinc finger has a C4-H-C3 motif that
spans about 50-80 amino acids. In ADDz, the conserved
histidine residue of the PHD finger is replaced by a
cysteine, and an additional zinc finger C2-C2 like
motif is located about twenty residues upstream of the
C4-C-C3 motif.
Length = 126
Score = 24.9 bits (55), Expect = 7.0
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 41 GGTKKKVYEDFLECLKLYDKQEDG 64
GG KK E+FLEC+ LYD DG
Sbjct: 24 GGLCKKCKENFLECMYLYD--NDG 45
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat. This family
contains the paired amphipathic helix repeat. The
family contains the yeast SIN3 gene (also known as
SDI1) that is a negative regulator of the yeast HO
gene. This repeat may be distantly related to the
helix-loop-helix motif, which mediate protein-protein
interactions.
Length = 47
Score = 24.0 bits (53), Expect = 7.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 47 VYEDFLECLKLYDKQ 61
Y++FL+ L Y
Sbjct: 3 KYDEFLKILNDYKAG 17
>gnl|CDD|236257 PRK08388, PRK08388, putative monovalent cation/H+ antiporter
subunit C; Reviewed.
Length = 119
Score = 24.9 bits (54), Expect = 7.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 66 MLGAELHHILISLGERMEESEV 87
++ + +H +LISLG RME
Sbjct: 35 LIDSGIHLLLISLGYRMENGLP 56
>gnl|CDD|171532 PRK12482, PRK12482, flagellar motor protein MotA; Provisional.
Length = 287
Score = 25.1 bits (55), Expect = 9.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 18 AVDLGRVLYALNLNPTLATIE 38
AVD GR L L+ PT AT++
Sbjct: 257 AVDAGRKLLPLDNKPTFATLD 277
>gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional.
Length = 289
Score = 25.0 bits (56), Expect = 9.8
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 11/34 (32%)
Query: 64 GTMLGAELHHILISLGERMEESEVNEVLQDCLDA 97
G M+G LGE + EV EV+ D A
Sbjct: 201 GLMVG---------LGE--TDEEVLEVMDDLRAA 223
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.137 0.387
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,633,692
Number of extensions: 480244
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 41
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)