RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10941
(110 letters)
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 91.4 bits (228), Expect = 3e-25
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 30/132 (22%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKK--------------- 46
K AF ++D G+ +I A +G + AL NPT A I K+ G K
Sbjct: 11 KEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLP 70
Query: 47 ------------VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94
+EDF+E L+++DK+ +GT++GAEL H+L +LGE+M E EV E+++
Sbjct: 71 MLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMK-- 128
Query: 95 LDAEDEDGFVQY 106
ED +G + Y
Sbjct: 129 -GQEDSNGCINY 139
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQD 93
+DF E L+D+ D + +++ I +LG+ +E+N++L +
Sbjct: 8 DDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGN 52
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 90.6 bits (226), Expect = 5e-25
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIE---------------------KL 40
K AF ++D G G+I +G +L A NPTLA I
Sbjct: 8 KQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLNRPN 67
Query: 41 GGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDE 100
G E+F++ +++DK G + EL ++L SLGE++ E++E+L+ +
Sbjct: 68 GFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLK---GVPVK 124
Query: 101 DGFVQY 106
DG V Y
Sbjct: 125 DGMVNY 130
Score = 38.3 bits (90), Expect = 8e-05
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQD 93
+ + L+D+ G + + +L + G+ +E+ E+
Sbjct: 5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIEST 49
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 89.6 bits (223), Expect = 2e-24
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 26/131 (19%)
Query: 2 KFAFDIYDT--EGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKK------------- 46
+ FD++D +G +DA +G +L L +NPT A + + GGTKK
Sbjct: 12 REVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEKAYKLEEILPI 71
Query: 47 -----------VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCL 95
++F+E K +D++ G + AE+ ++L LGER+ E + N++ C
Sbjct: 72 YEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCD 131
Query: 96 DAEDEDGFVQY 106
ED DG ++Y
Sbjct: 132 IREDIDGNIKY 142
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 86.8 bits (216), Expect = 2e-23
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 25/130 (19%)
Query: 2 KFAFDIYD--TEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKK------------- 46
K F+++D +G +DA LG V L +NP + +GGT K
Sbjct: 12 KDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPA 71
Query: 47 ----------VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLD 96
+ D++E K +D++ G + GAEL H+L +LGER+ + +V+E+++
Sbjct: 72 YEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDL 131
Query: 97 AEDEDGFVQY 106
ED +G V+Y
Sbjct: 132 QEDLEGNVKY 141
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 83.8 bits (208), Expect = 3e-22
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 30/132 (22%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKK--------------- 46
K AF+++D G+G+I G V+ AL NPT A + K+ G K
Sbjct: 13 KEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLP 72
Query: 47 ------------VYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94
YED+LE +++DK+ +G ++GAEL H+L +LGE+M E EV VL
Sbjct: 73 MLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLA-- 130
Query: 95 LDAEDEDGFVQY 106
ED +G + Y
Sbjct: 131 -GHEDSNGCINY 141
Score = 33.0 bits (76), Expect = 0.007
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
E+F E +L+D+ DG +L ++ ++ +LG+ +EV +VL + E + V +
Sbjct: 10 EEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDF 67
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 77.6 bits (192), Expect = 7e-20
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 23/124 (18%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL----GGT-------------- 43
+ G+I + L L P+ +K+ G
Sbjct: 18 DVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLEYLSICV 77
Query: 44 -KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
K E+ ++ +D G + +++ +IL + G+ + + E + L +
Sbjct: 78 HDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNA----FSSED 133
Query: 103 FVQY 106
+ Y
Sbjct: 134 NIDY 137
Score = 34.5 bits (80), Expect = 0.002
Identities = 5/57 (8%), Positives = 19/57 (33%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQ 105
++ + +K G + + LG + ++ + D + +++
Sbjct: 15 DESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLE 71
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 76.9 bits (190), Expect = 2e-19
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 31/134 (23%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------------------- 40
K F ++D +G G I LG L A+ NPT ++ +
Sbjct: 7 KDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGL 66
Query: 41 --------GGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92
T K EDF++ +++DK+ G + +L ++L LGE++ ++EV+E+L+
Sbjct: 67 IEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLK 126
Query: 93 DCLDAEDEDGFVQY 106
+ D +G + Y
Sbjct: 127 GV-EV-DSNGEIDY 138
Score = 33.7 bits (78), Expect = 0.004
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFV 104
+ L+DK+ G + L L ++G V +++ + +
Sbjct: 4 RANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSS-LRDASSL 58
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 72.6 bits (179), Expect = 6e-18
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 23/126 (18%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------------------- 40
+ F I+D + +G++ +LG L +L NPT A + +
Sbjct: 8 QECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKP 67
Query: 41 GGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDE 100
T + ++ L+ + DK+ +GT+ AEL +L++LG+ + SEV E++++ +
Sbjct: 68 IKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKE-VSV-SG 125
Query: 101 DGFVQY 106
DG + Y
Sbjct: 126 DGAINY 131
Score = 34.8 bits (81), Expect = 0.001
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGF 103
+ EC +++DK DG + EL L SLG+ +E+N + L+A E
Sbjct: 5 DQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQ-LNA-KEFDL 57
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 71.7 bits (177), Expect = 2e-17
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 26/128 (20%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------GGT---------- 43
K AF ++D + +G I A +L V+ +L L+P+ A + L
Sbjct: 14 KEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALM 73
Query: 44 -----KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
++ LE K++DK DG + AEL H+L S+GE++ ++EV+E+L+ +
Sbjct: 74 SRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLR---EVS 130
Query: 99 DEDGFVQY 106
D G +
Sbjct: 131 DGSGEINI 138
Score = 32.4 bits (75), Expect = 0.010
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+F E L+DK G++ +EL ++ SLG E+EV +++ + D DG
Sbjct: 11 AEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEI----DVDG 60
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 68.7 bits (169), Expect = 2e-16
Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 25/128 (19%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------GGT---------- 43
K AF ++D +G+G I +LG V+ +L NPT A ++ + GT
Sbjct: 13 KEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLM 72
Query: 44 -----KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
++ E+ +E K++D+ +G + AEL H++ +LGE++ + EV+E++++ D
Sbjct: 73 ARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIRE-ADI- 130
Query: 99 DEDGFVQY 106
D DG + Y
Sbjct: 131 DGDGHINY 138
Score = 33.2 bits (77), Expect = 0.005
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+F E L+DK DGT+ EL ++ SLG+ E+E+ +++ + +DA D +G + +
Sbjct: 10 AEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE-VDA-DGNGTIDF 65
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 66.7 bits (164), Expect = 1e-15
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 25/126 (19%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATI---------------------EKL 40
K AF++ D +G ID DL +L ++ NPT + EKL
Sbjct: 10 KEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKL 69
Query: 41 GGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDE 100
GT + + +D++ G + L +L ++G+R + EV+E+ ++ D+
Sbjct: 70 NGTDPE--DVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREA-P-IDK 125
Query: 101 DGFVQY 106
G Y
Sbjct: 126 KGNFNY 131
Score = 31.7 bits (73), Expect = 0.023
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQD 93
++F E + D+ DG + +LH +L S+G+ + + ++ +
Sbjct: 7 QEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE 51
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 66.4 bits (163), Expect = 2e-15
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 26/126 (20%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATI---------------------EKL 40
K AF + D + +G I DL + +L P + EK+
Sbjct: 19 KEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKV 78
Query: 41 GGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDE 100
GT + + ++D+ G + L +L ++G+ + E+ V + DA +
Sbjct: 79 SGTDPE--DALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWK---DAPLK 133
Query: 101 DGFVQY 106
+ Y
Sbjct: 134 NKQFNY 139
Score = 31.0 bits (71), Expect = 0.035
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQD 93
++ E + D+ DG + +L + SLG + E+N +L++
Sbjct: 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKE 60
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 64.1 bits (157), Expect = 1e-14
Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 26/126 (20%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATI---------------------EKL 40
K AF + D + +G + D+ + L P + +KL
Sbjct: 21 KEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKL 80
Query: 41 GGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDE 100
GT + E ++D+QE + + +L ++G+ + E+ + +A E
Sbjct: 81 SGTDSE--ETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFK---EAPVE 135
Query: 101 DGFVQY 106
G Y
Sbjct: 136 GGKFDY 141
Score = 30.9 bits (71), Expect = 0.040
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQD 93
++ E + D DG + ++ I LG ++ E+ +L++
Sbjct: 18 QEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE 62
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 64.1 bits (157), Expect = 2e-14
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 25/128 (19%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------GGT---------- 43
K AF ++D +G+G I +LG V+ +L NPT A ++ + GT
Sbjct: 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM 73
Query: 44 -----KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
E+ E +++DK +G + AEL H++ +LGE++ + EV+E++++ D
Sbjct: 74 ARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE-ADI- 131
Query: 99 DEDGFVQY 106
D DG V Y
Sbjct: 132 DGDGQVNY 139
Score = 32.9 bits (76), Expect = 0.008
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+F E L+DK DGT+ EL ++ SLG+ E+E LQD ++ D DG
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE----LQDMINEVDADG 60
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 63.9 bits (156), Expect = 5e-14
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 26/126 (20%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATI---------------------EKL 40
K AF + D + +G I D+ +L T + +++
Sbjct: 60 KEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFGDRI 119
Query: 41 GGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDE 100
GT ++ + + L+D+ DG L L + GE+ + EV++ L + D
Sbjct: 120 AGTDEE--DVIVNAFNLFDEG-DGKCKEETLKRSLTTWGEKFSQDEVDQALSE-AP-IDG 174
Query: 101 DGFVQY 106
+G +
Sbjct: 175 NGLIDI 180
Score = 33.1 bits (76), Expect = 0.009
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQD 93
++F E +L D+ +DG + ++ SLG E E++ ++ +
Sbjct: 57 QEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE 101
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 62.5 bits (153), Expect = 5e-14
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 26/128 (20%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDFL--- 52
K AF+++D+E G I L VL + A ++ G K + +FL
Sbjct: 9 KEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMM 68
Query: 53 --------------ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
+ + +D + G + A L L++LG+R++ E E L E
Sbjct: 69 GRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLG---ITE 125
Query: 99 DEDGFVQY 106
E G ++Y
Sbjct: 126 TEKGQIRY 133
Score = 32.5 bits (75), Expect = 0.010
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+F E +L+D + G + L +L G R+E + + + D G
Sbjct: 6 SEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAA----FNEMFNEADATG 55
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 63.1 bits (154), Expect = 7e-14
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDFL----- 52
F DT+G+G I +L L + + +LAT EKL + + +++F
Sbjct: 32 WFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHF 91
Query: 53 -----ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
E + D DG + E+ L+S G ++ E +++ D G + +
Sbjct: 92 ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRK-FDR-QRRGSLGF 148
Score = 26.5 bits (59), Expect = 1.9
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
++ +E + D G + EL+ L S G + ++L D + G + +
Sbjct: 27 QELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHM-YDK-NHSGEITF 82
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 64.1 bits (156), Expect = 1e-13
Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 25/128 (19%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDFL--- 52
K AF ++D +G+G I +LG V+ +L NPT A ++ + G + +FL
Sbjct: 315 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM 374
Query: 53 --------------ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
E +++DK +G + AEL H++ +LGE++ + EV+E++++ D
Sbjct: 375 ARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE-AD-I 432
Query: 99 DEDGFVQY 106
D DG V Y
Sbjct: 433 DGDGQVNY 440
Score = 45.3 bits (107), Expect = 5e-07
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG-----GTKKKVY---------- 48
I+ + ++ L L I+ G K +
Sbjct: 252 ERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQLTEEQI 311
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+F E L+DK DGT+ EL ++ SLG+ E+E+ +++ + D DG
Sbjct: 312 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV----DADG 361
Score = 26.0 bits (57), Expect = 3.4
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVN 88
E +++ ++ K + AE+ +L R+E ++
Sbjct: 247 EGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGID 286
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 60.7 bits (148), Expect = 3e-13
Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 26/127 (20%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYAL-NLNPTLATI---------------------EK 39
K AF + D +G ID DL A+ LN + EK
Sbjct: 28 KEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEK 87
Query: 40 LGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAED 99
L G + + + K+ D G++ + L +L + G R E+ + D
Sbjct: 88 LKGADPE--DVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAF-P-PD 143
Query: 100 EDGFVQY 106
G V Y
Sbjct: 144 VAGNVDY 150
Score = 29.5 bits (67), Expect = 0.15
Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGER-MEESEVNEVLQD 93
EDF E + D+ DG + +L ++G ++ E++ ++++
Sbjct: 25 EDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 60.2 bits (147), Expect = 4e-13
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 25/128 (19%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDFL--- 52
+ AFD++D +G G ID +L + AL P I+K+ GT K + DFL
Sbjct: 9 REAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVM 68
Query: 53 --------------ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
+ KL+D E G + L + LGE + + E+ E++ + D
Sbjct: 69 TQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDE-ADR- 126
Query: 99 DEDGFVQY 106
D DG V
Sbjct: 127 DGDGEVSE 134
Score = 30.5 bits (70), Expect = 0.060
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
++ E L+D GT+ EL + +LG ++ E+ +++ + D++G
Sbjct: 6 QEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEI----DKEG 55
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 59.5 bits (145), Expect = 1e-12
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------GGT---------- 43
+ AFD++DT+G+G IDA +L + AL P I+K+ GT
Sbjct: 31 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMM 90
Query: 44 -----KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
++ E+ L+ +L+D GT+ +L + LGE + E E+ E++ + D
Sbjct: 91 TAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAE-ADR- 148
Query: 99 DEDGFVQY 106
++D +
Sbjct: 149 NDDNEIDE 156
Score = 30.2 bits (69), Expect = 0.083
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
++ E L+D GT+ EL + +LG ++ E+ +++ + D+DG
Sbjct: 28 QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEI----DKDG 77
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 57.9 bits (141), Expect = 5e-12
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 25/126 (19%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------GGT------------ 43
AF ++D +G +D +L + AL I L
Sbjct: 28 AFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGE 87
Query: 44 ---KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDE 100
K+ ++ +L+D G + L + LGE + + E+ ++++ D D
Sbjct: 88 KILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEE-FDL-DG 145
Query: 101 DGFVQY 106
DG +
Sbjct: 146 DGEINE 151
Score = 30.2 bits (69), Expect = 0.070
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
++ E L+D DG + EL + +LG + + E + D +D D +G
Sbjct: 23 QEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKRE----ILDLIDEYDSEG 72
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 57.2 bits (139), Expect = 7e-12
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 28/131 (21%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------GGT---------- 43
K AFD++D +G G I +LG V+ L NPT ++ + GT
Sbjct: 23 KAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMM 82
Query: 44 --------KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCL 95
K K E+ C +++DK DG + EL IL + GE + E ++ ++++D
Sbjct: 83 VRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKD-S 141
Query: 96 DAEDEDGFVQY 106
D + DG + +
Sbjct: 142 DK-NNDGRIDF 151
Score = 31.0 bits (71), Expect = 0.035
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+F ++D G + EL ++ LG+ + E++ ++++ DEDG
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEV----DEDG 69
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 54.9 bits (133), Expect = 7e-11
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 19/120 (15%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNP-TLATIEKL------GGTKKKVYEDFL---- 52
F D + +G I +L + L P T+ + + +F
Sbjct: 12 VFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWK 71
Query: 53 ------ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+ YD+ G + EL L G R+ + + +++ G + +
Sbjct: 72 YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF--DRQGRGQIAF 129
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 53.7 bits (130), Expect = 2e-10
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 29/132 (21%)
Query: 2 KFAFDIYDTEGN-GQIDAVDLGRVLYALNLNPTLATIEKL--------GGT--------- 43
K AFDI+ G I +LG+V+ L NPT ++++ GT
Sbjct: 21 KAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVM 80
Query: 44 ---------KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDC 94
K K E+ + +++DK DG + EL +L + GE + E ++ E+++D
Sbjct: 81 MVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKD- 139
Query: 95 LDAEDEDGFVQY 106
D + DG + Y
Sbjct: 140 GDK-NNDGRIDY 150
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 53.3 bits (129), Expect = 2e-10
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 30/133 (22%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------GGT---------- 43
+ AF +D + +G I+ DLG + + PT + +L GG
Sbjct: 14 REAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELM 73
Query: 44 ---------KKKVYEDFLECLKLYDKQEDGTMLGAELHHILIS-LGERMEESEVNEVLQD 93
++ + + +D DG + +EL + + LG ++ ++ E+++D
Sbjct: 74 GPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRD 133
Query: 94 CLDAEDEDGFVQY 106
+D + DG V +
Sbjct: 134 -VDL-NGDGRVDF 144
Score = 31.4 bits (72), Expect = 0.027
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
E+ E + +DK +DG + +L + + ++G E E+ E+ Q + +
Sbjct: 11 EELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQI----NMNL 60
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 50.6 bits (122), Expect = 2e-09
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 30/131 (22%)
Query: 4 AFDIYDT-EGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDFL---- 52
AF ++T EG+G++ +G +L L + T +TI +L G ++ F
Sbjct: 18 AFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGA 77
Query: 53 -----------------ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCL 95
E +LYDK+ +G + + IL L E + +++ ++ + +
Sbjct: 78 RFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDE-I 136
Query: 96 DAEDEDGFVQY 106
DA D G V +
Sbjct: 137 DA-DGSGTVDF 146
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 49.0 bits (117), Expect = 2e-08
Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 19/121 (15%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDF------ 51
F D + +G ++ +L + + + T ++ + +F
Sbjct: 56 WFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKF 115
Query: 52 ----LECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE---DEDGFV 104
+ + GT+ E+ L LG + + + + D + ++
Sbjct: 116 MELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFARGMAFCDLNCWI 175
Query: 105 Q 105
Sbjct: 176 A 176
Score = 30.1 bits (68), Expect = 0.11
Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 5/59 (8%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLG-----GTKKKVYEDFLECL 55
F + +G ++ ++ L L T L G ++
Sbjct: 120 YNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFARGMAFCDLNCWIAIC 178
Score = 24.4 bits (53), Expect = 9.5
Identities = 7/41 (17%), Positives = 11/41 (26%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNE 89
+ D+ GT+ EL G R+
Sbjct: 51 TRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALR 91
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 48.4 bits (116), Expect = 3e-08
Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 26/129 (20%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDFL--- 52
+ F D + +G + + ++ L + I ++ + + Y DFL
Sbjct: 60 RNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAAT 119
Query: 53 -------------ECLKLYDKQEDGTMLGAELHHIL--ISLGERMEESEVNEVLQDCLDA 97
K +D +G + EL I + + + ++ +LQ+ D
Sbjct: 120 IDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV-DL 178
Query: 98 EDEDGFVQY 106
+ DG + +
Sbjct: 179 -NGDGEIDF 186
Score = 29.5 bits (67), Expect = 0.14
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+ D GT+ E+ L +G + ++++VL+D +D+ + G + Y
Sbjct: 57 NNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRD-IDS-NASGQIHY 112
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 47.1 bits (113), Expect = 6e-08
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 26/127 (20%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDFL--- 52
K F++ D + +GQI +L L + N + I L + Y++F+
Sbjct: 30 KEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAAT 89
Query: 53 -------------ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAED 99
+DK G + EL G +E+ + E+++D D D
Sbjct: 90 LHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDV-DQ-D 145
Query: 100 EDGFVQY 106
DG + Y
Sbjct: 146 NDGRIDY 152
Score = 29.4 bits (67), Expect = 0.13
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
E + D + G + EL L +G ++ESE+ +++Q D D G + Y
Sbjct: 27 AGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQA-ADV-DNSGTIDY 82
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 46.1 bits (110), Expect = 1e-07
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 26/125 (20%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL--------GGT------------ 43
F + DT+ +G I +L L + + I+ L GT
Sbjct: 15 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVH 74
Query: 44 --KKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDED 101
K + E+ + +DK G + E+ G +++ +++++++ D D D
Sbjct: 75 LNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEI-DQ-DND 130
Query: 102 GFVQY 106
G + Y
Sbjct: 131 GQIDY 135
Score = 30.3 bits (69), Expect = 0.086
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
E K+ D GT+ EL L +G + ESE ++D +DA D D
Sbjct: 10 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESE----IKDLMDAADIDK 59
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 45.9 bits (109), Expect = 2e-07
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 21/105 (20%)
Query: 9 DTEGNGQIDAVDLGRVLYALNLNPT-----LATIEKL------GGTKKKVYEDFL----- 52
+GQIDA +L R L + L T + + + +F
Sbjct: 42 VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAV 101
Query: 53 -----ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92
+ +D GT+ EL L ++G R+ VN + +
Sbjct: 102 LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 146
Score = 34.7 bits (80), Expect = 0.002
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYAL--NLNPTLAT--IEKLGGTKKKVYEDFLECL---- 55
F +DT+ +G +D +L + L + L+P ++ K ++D++ C
Sbjct: 108 HFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLR 167
Query: 56 ------KLYDKQEDGT 65
+ D + G
Sbjct: 168 ALTDSFRRRDTAQQGV 183
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 46.0 bits (109), Expect = 3e-07
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 41/144 (28%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL----------------------- 40
+ YDT+ +G I+ +L L L +
Sbjct: 108 TWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELT 167
Query: 41 ---------------GGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEES 85
K ++F + +LYD+ +G + EL +L L E+ ++
Sbjct: 168 EMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQE 227
Query: 86 EVNEVLQDCLDA---EDEDGFVQY 106
+ + G +
Sbjct: 228 LDINNISTYKKNIMALSDGGKLYR 251
Score = 44.1 bits (104), Expect = 1e-06
Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 43/146 (29%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEK------------------------ 39
+ +D +G+G ++ +L ++ L A +E
Sbjct: 21 IWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVEL 80
Query: 40 -------------LGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESE 86
+ K E+F++ + YD G + EL + L L E+ ++
Sbjct: 81 AHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTV 140
Query: 87 VNEVLQDCLDA------EDEDGFVQY 106
+ L + D + DG ++
Sbjct: 141 DDTKLAEYTDLMLKLFDSNNDGKLEL 166
Score = 32.2 bits (73), Expect = 0.018
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVN--EVLQDCLDAEDEDG 102
F E +D G + G EL +++ L + +++ + ++ +D +
Sbjct: 16 SQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRD 71
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 43.4 bits (103), Expect = 3e-07
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------GGTKKKVYEDFLECL 55
K AF ++D + + ++ A +LG V+ AL NPT I ++ + K E FL +
Sbjct: 17 KEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIM 76
Query: 56 KLYDKQED 63
Y ++ D
Sbjct: 77 LEYGQEVD 84
Score = 39.2 bits (92), Expect = 1e-05
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+++ E +L+DK D + EL ++ +LG + +++E+++D D+D
Sbjct: 14 QEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDY----DKDN 63
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 45.0 bits (107), Expect = 5e-07
Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 30/132 (22%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL------------------GGTKK 45
F D +G+ +DA + + L L L A E + +
Sbjct: 42 FFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRP 101
Query: 46 KVYEDFLECL----KLYDKQEDGTMLGAEL-------HHILISLGERMEESEVNEVLQDC 94
+ + + D+ DG + +L H + GE E+ + L +
Sbjct: 102 PMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDN- 160
Query: 95 LDAEDEDGFVQY 106
D+ ++DG V
Sbjct: 161 FDSSEKDGQVTL 172
Score = 28.5 bits (64), Expect = 0.38
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+ + D+ ++ E L LG ++++E V + D + G +
Sbjct: 37 QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRK-WDR-NGSGTLDL 92
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 44.5 bits (106), Expect = 5e-07
Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 35/132 (26%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPT------------------------LATIEK 39
F + D +G G I L + L L A +++
Sbjct: 57 TFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDR 116
Query: 40 LGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERM-----EESEVNEVLQDC 94
+KK +Y F +++D DG + AEL HIL + ++ + + V +++D
Sbjct: 117 KQLSKKLIYCAF----RVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDV 172
Query: 95 LDAEDEDGFVQY 106
D + DG + +
Sbjct: 173 -DK-NNDGKIDF 182
Score = 27.6 bits (62), Expect = 0.60
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
E + D+ G + +L L G ++ + +L +D+ D G + Y
Sbjct: 52 EKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPY-NFDLLLDQ-IDS-DGSGKIDY 106
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 44.7 bits (106), Expect = 6e-07
Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 45/148 (30%)
Query: 2 KFAFDIYDTEGNGQIDAVDL-----GRVLYALNLNPTLATIEKL--------GGTKKKV- 47
K FD D GNG+I ++ + L P ++ G +
Sbjct: 23 KHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKE 82
Query: 48 --YEDFLECL---------------------------KLYDKQEDGTMLGAELHHILISL 78
+ FL+ ++DK GT+ E
Sbjct: 83 IAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKIS 142
Query: 79 GERMEESEVNEVLQDCLDAEDEDGFVQY 106
G + + + C D D G +
Sbjct: 143 GISPSQEDCEATFRHC-DL-DNAGDLDV 168
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 45.2 bits (107), Expect = 6e-07
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKV------YEDFL----- 52
F G+G+ DL +VL ++KL + Y +
Sbjct: 127 LFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVAND 186
Query: 53 -----ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+ D +GT+ E + LG + + + + D DE V +
Sbjct: 187 LAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKS-VQDALFRY-ADE-DESDDVGF 242
Score = 37.9 bits (88), Expect = 2e-04
Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 26/123 (21%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKV---------YEDFLEC 54
F DT NG + + L + + + L + + +++
Sbjct: 193 DFRKIDTNSNGTLSRKEFREHFVRLGFDKK-SVQDAL---FRYADEDESDDVGFSEYVHL 248
Query: 55 L----------KLYDKQEDGTMLGAELHHILISLG-ERMEESEVNEVLQDCLDAEDEDGF 103
D + G + E+ +L + D D+
Sbjct: 249 GLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVV-DV-DDSKS 306
Query: 104 VQY 106
+ Y
Sbjct: 307 LSY 309
Score = 32.9 bits (75), Expect = 0.014
Identities = 13/113 (11%), Positives = 28/113 (24%), Gaps = 21/113 (18%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFL--------- 52
K YD + + DA + A ++L K + +D
Sbjct: 54 KAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRPSK 113
Query: 53 ------------ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQD 93
+ G +L +L + + E + ++
Sbjct: 114 PMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVM 166
Score = 27.5 bits (61), Expect = 0.85
Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 13/64 (20%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQ 61
+ + D + +GQ+ ++ +VL + + F + D
Sbjct: 256 RILYAFADFDKSGQLSKEEVQKVLEDA-------------HIPESARKKFEHQFSVVDVD 302
Query: 62 EDGT 65
+ +
Sbjct: 303 DSKS 306
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 44.3 bits (105), Expect = 7e-07
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 9 DTEGNGQIDAVDLGRVLYALNLNPT-----LATIEKL------GGTKKKVYEDFL----- 52
+G++DA +L R L +N T L T + T K + F
Sbjct: 9 VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA 68
Query: 53 -----ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
E D+ GT+ EL + +G R+ + L + ++G + +
Sbjct: 69 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLS----PQTLTTIVKRYSKNGRIFF 123
Score = 33.5 bits (77), Expect = 0.005
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYAL--NLNP-TLATIEKLGGTKKKV-YEDFLECL---- 55
F D +G+G ++ +L + + + L+P TL TI K ++ ++D++ C
Sbjct: 75 NFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLR 134
Query: 56 ------KLYDKQEDGT 65
+ D + G+
Sbjct: 135 ALTDFFRKRDHLQQGS 150
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 43.0 bits (102), Expect = 7e-07
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
E+ E ++ DK +G + AEL H++ +LGE++ + EV+E++++ D D DG V Y
Sbjct: 29 EEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA-D-IDGDGQVNY 84
Score = 34.6 bits (80), Expect = 0.001
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
AF + D +GNG I A +L V+ L T ++++
Sbjct: 34 AFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 70
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 41.8 bits (99), Expect = 2e-06
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
E+ E K++DK ++G + +EL H++I+LGE++ + EV +++++ D D DG V Y
Sbjct: 9 EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEA-DL-DGDGQVNY 64
Score = 32.6 bits (75), Expect = 0.006
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
AF ++D + NG I A +L V+ L T +E++
Sbjct: 14 AFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQM 50
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 43.3 bits (102), Expect = 2e-06
Identities = 26/148 (17%), Positives = 40/148 (27%), Gaps = 45/148 (30%)
Query: 2 KFAFDIYDTEGNGQIDAVDL-----GRVLYALNLNPTLATIEKL--------GGTKKKVY 48
K F+ D NG+I ++ V+ L P A K G K V
Sbjct: 19 KHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVE 78
Query: 49 EDFLE------------------------------CLKLYDKQEDGTMLGAELHHILISL 78
D+ + DK ++G + E +
Sbjct: 79 TDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAA 138
Query: 79 GERMEESEVNEVLQDCLDAEDEDGFVQY 106
G + E + C D DE G +
Sbjct: 139 GIIQSSEDCEETFRVC-DI-DESGQLDV 164
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 42.5 bits (101), Expect = 2e-06
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 31/128 (24%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL---------------------GG 42
F D G+G + ++ + ++ + G
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
Query: 43 TKKKVYEDFLECL----KLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
+ + D L KL D DG + E+ G +V E + DA
Sbjct: 65 IQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIE----KVAEQVMKA-DA- 118
Query: 99 DEDGFVQY 106
+ DG++
Sbjct: 119 NGDGYITL 126
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 41.4 bits (98), Expect = 2e-06
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
K AFD++D +G G I +LG V+ L NPT ++ +
Sbjct: 23 KAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI 61
Score = 38.4 bits (90), Expect = 4e-05
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+F ++D G + EL ++ LG+ + E++ ++++ DEDG
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEV----DEDG 69
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 40.6 bits (96), Expect = 4e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
AFD++DT G ID +L + AL + I +L
Sbjct: 12 AFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILEL 48
Score = 33.6 bits (78), Expect = 0.002
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
++ E L+D + G++ EL + +LG +++ E+ E++ + D +G
Sbjct: 7 QEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEY----DREG 56
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 41.2 bits (97), Expect = 4e-06
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
K + +D GNG ID + L R+L L + T ++KL
Sbjct: 35 KEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKL 73
Score = 34.3 bits (79), Expect = 0.002
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
E F E +D +G + L +L LG E+ +++ +
Sbjct: 32 EGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEV----SSGS 81
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 39.0 bits (92), Expect = 1e-05
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
ED + +D+ DG + EL + LG+ + + E++ ++++ D D+DG V Y
Sbjct: 6 EDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREA-DV-DQDGRVNY 61
Score = 32.1 bits (74), Expect = 0.005
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIE 38
AF +D +G+G I +L R + L ++
Sbjct: 11 AFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELD 45
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 39.4 bits (92), Expect = 2e-05
Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 48 YEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
Y + + +D + T+ E I + + + + + + + + G ++Y
Sbjct: 23 YHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEM-PV-NAKGRLKY 79
Score = 31.7 bits (72), Expect = 0.016
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
F+ +DT I + + T ++L
Sbjct: 29 EFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL 65
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 40.5 bits (95), Expect = 2e-05
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVY---EDFLECLKLYDKQ 61
+ + +G+ ++D RVL T + + + +LYD
Sbjct: 67 IESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLD 126
Query: 62 EDGTMLGAELHHILISL-GERMEESEVNEVLQDCLDAEDEDG 102
DG + E+ +L + G ++ E ++ + + DEDG
Sbjct: 127 RDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDG 168
Score = 34.0 bits (78), Expect = 0.004
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYAL 28
+AF +YD + +G+I ++ +VL +
Sbjct: 117 HYAFQLYDLDRDGKISRHEMLQVLRLM 143
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule
2, metal-binding protein; 2.15A {Homo sapiens} PDB:
2jjz_B 2vtg_A
Length = 150
Score = 39.8 bits (93), Expect = 2e-05
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
K + +D G+ID + L R++ L + T ++K+
Sbjct: 53 KEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKM 91
Score = 31.4 bits (71), Expect = 0.032
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
F E +D +G + L ++ LG E+ +++ +
Sbjct: 50 TAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEV----TGGV 99
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 39.5 bits (93), Expect = 3e-05
Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 30/126 (23%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLA------------TIE----------- 38
F D + +G + + + L NP + ++
Sbjct: 9 GKRFKKLDLDNSGSLSVEEFMSLP-ELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQF 67
Query: 39 -KLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL-GERMEESEVNEVLQDCLD 96
G ++K+ F ++YD +DG + EL +L + G ++++++ +++ +
Sbjct: 68 SVKGDKEQKLRFAF----RIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTII 123
Query: 97 AEDEDG 102
D+DG
Sbjct: 124 NADKDG 129
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 39.7 bits (93), Expect = 3e-05
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 25/118 (21%)
Query: 10 TEGNGQIDAVDLGRVLYALNLNPT-----LATIEKL------GGTKKKVYEDFL------ 52
+GQIDA +L R L + L T + + + +F
Sbjct: 12 AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 71
Query: 53 ----ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+ +D GT+ EL L ++G R+ VN + + G + +
Sbjct: 72 NGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY----STSGKITF 125
Score = 32.7 bits (75), Expect = 0.010
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL----GGTKKKVYEDFLECL---- 55
F +D++ +G +D +L + L + T+ + + K ++D++ C
Sbjct: 77 HFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLR 136
Query: 56 ------KLYDKQEDGT 65
+ D + G
Sbjct: 137 ALTDSFRRRDSAQQGM 152
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 39.7 bits (92), Expect = 5e-05
Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDG 64
YD +G++ +L ++ N L + +F++ + YD G
Sbjct: 63 MSAYDATFDGRLQIEELANMILPQEENFLLIFRRE---APLDNSVEFMKIWRKYDADSSG 119
Query: 65 TMLGAELHHILISLGER----MEESEVNEVLQDCLDAEDEDG 102
+ AEL + L L + + ++++E + D++
Sbjct: 120 YISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNK 161
Score = 37.4 bits (86), Expect = 3e-04
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDG 64
I+D +G++D DL R+L ++ ++K DF + YD G
Sbjct: 154 MKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERK--RDFEKIFAHYDVSRTG 211
Query: 65 TMLGAELHHILISLGERMEESEVNEVLQDCLDA------EDEDGFVQY 106
+ G E+ + + E + S L + ++DG +Q
Sbjct: 212 ALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQK 259
Score = 34.3 bits (78), Expect = 0.004
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 13/110 (11%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQED 63
+ +D + NG I+ +L + T ++V + + YD D
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKI----TDERVQQIKKSFMSAYDATFD 71
Query: 64 GT---------MLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFV 104
G +L E + +LI E ++ V + D G++
Sbjct: 72 GRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYI 121
Score = 29.3 bits (65), Expect = 0.20
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESE------VNEVLQDCLDAEDEDG 102
FL+ + +D ++G + G EL + ++++ + V ++ + + A D
Sbjct: 11 AGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATF 70
Score = 25.4 bits (55), Expect = 4.7
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYAL 28
F YD G ++ ++ + +
Sbjct: 201 IFAHYDVSRTGALEGPEVDGFVKDM 225
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 37.1 bits (87), Expect = 6e-05
Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 50 DFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+ +DK +DG + E + ++ + ++ + ++ +D D +G +
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEE-IDV-DGNGELNA 56
Score = 35.9 bits (84), Expect = 2e-04
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
F+ +D +G++ + V A + T I K
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKF 42
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 39.0 bits (91), Expect = 8e-05
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 5 FDIYDTEGNGQID------AVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLY 58
+ + +EG Q++ + R + + + E L K++ F +LY
Sbjct: 67 INAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAF----RLY 122
Query: 59 DKQEDGTMLGAELHHILISL-GERMEESEVNEVLQDCLDAEDEDG 102
D +D + EL +L + G + + ++ + + D+DG
Sbjct: 123 DLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDG 167
Score = 32.8 bits (75), Expect = 0.011
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYAL 28
FAF +YD + + +I +L +VL +
Sbjct: 116 HFAFRLYDLDKDDKISRDELLQVLRMM 142
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 38.0 bits (88), Expect = 1e-04
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
K + +D GNG ID + L R+L L + T +++L
Sbjct: 51 KVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRL 89
Score = 33.3 bits (76), Expect = 0.006
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
E F +D +G + L +L LG E+ ++++ + + Y
Sbjct: 48 EAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIRE-VS-SGSEETFSY 103
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 37.7 bits (88), Expect = 2e-04
Identities = 13/124 (10%), Positives = 33/124 (26%), Gaps = 33/124 (26%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPT-----------------------LATIE 38
F DT NG + ++ VL ++ +
Sbjct: 42 NELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGCYR 101
Query: 39 KLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAE 98
+ F DK EDG + +++ ++ + ++ ++++
Sbjct: 102 WKNIESTFLKAAF----NKIDKDEDGYISKSDIVSLV--HDKVLDNNDIDNFFLSV---- 151
Query: 99 DEDG 102
Sbjct: 152 HSIK 155
Score = 26.5 bits (59), Expect = 1.5
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+ E D +G++ E++ +L S+G +++ ++N +LQ LD ++ G + Y
Sbjct: 39 KYINELFYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQA-LDI-NDRGNITY 92
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 37.0 bits (86), Expect = 3e-04
Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 4/105 (3%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECL-KLYDK 60
F +D +GNG ID D A+ +A G E + L + D+
Sbjct: 7 AARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADR 66
Query: 61 QEDGTMLGAE---LHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
D + E + L L D DG
Sbjct: 67 DGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDG 111
Score = 31.2 bits (71), Expect = 0.031
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNP 32
A + DT+G+G + D R L A +
Sbjct: 100 LHAALGVADTDGDGAVTVADTARALTAFGVPE 131
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 35.2 bits (82), Expect = 4e-04
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
F + DT+ +G I +L L + + I+ L
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDL 64
Score = 33.6 bits (78), Expect = 0.002
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
E K+ D GT+ EL L +G + ESE+ +++ D D+ G + Y
Sbjct: 23 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDA-ADI-DKSGTIDY 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 5e-04
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 3 FAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYE--DFLECLKLY-- 58
++ + + + + L R+++ L+ I + L+ LK Y
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 59 ---DKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYAHSE 110
D L + L + E + S+ ++L+ L AEDE + AH +
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE-AIFEEAHKQ 586
Score = 28.3 bits (62), Expect = 0.52
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 32/97 (32%)
Query: 6 DIYDTEGNGQIDAVDLG-RVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDG 64
++ + + +A +L + L T T+ K DFL
Sbjct: 252 NVQNAK---AWNAFNLSCK---------ILLT------TRFKQVTDFLSAATTT------ 287
Query: 65 TMLGAELHHILISLGERMEESEVNEVLQDCLDAEDED 101
H L + EV +L LD +D
Sbjct: 288 -------HISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Score = 27.9 bits (61), Expect = 0.74
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 36 TIEKLGGTKKKVYEDFLECLKLYDKQ---EDGTMLGAELH---HILISLGERMEESEVNE 89
+KL + E L L+ + + + ++ H +L + + +S+V
Sbjct: 351 NCDKL----TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 90 VLQDC----LDAEDEDGFVQYAHS 109
V+ L + S
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPS 430
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 34.5 bits (80), Expect = 9e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTL 34
+ AF D G+G + A++L + L+ L
Sbjct: 10 EAAFKKLDANGDGYVTALELQTFMVTLDAYKAL 42
Score = 31.4 bits (72), Expect = 0.015
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 45 KKVYEDFLECLKLYDKQEDGTMLGAELHHILISLGER--MEESEVNEVLQDCLDAEDEDG 102
KV + K D DG + EL +++L + + +V E + D++
Sbjct: 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNS 62
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 35.9 bits (83), Expect = 9e-04
Identities = 18/143 (12%), Positives = 37/143 (25%), Gaps = 40/143 (27%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLAT-------------IEKLG--GTKKK 46
K D G+G I D + + L+ ++LG +
Sbjct: 17 KTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRI 76
Query: 47 VYEDFL-----------------------ECLKLYDKQEDGTMLGAELHHILISLGERME 83
E+ D +DG + E L ++G +
Sbjct: 77 SVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLT 136
Query: 84 ESEVNEVLQDCLDAEDEDGFVQY 106
+ + D +++G +
Sbjct: 137 DDKAITCFNTL-DF-NKNGQISR 157
Score = 32.8 bits (75), Expect = 0.011
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
+ +D DT+ +G + + L A+ + T
Sbjct: 104 SLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITC 143
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 34.5 bits (80), Expect = 0.001
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
F +DT G+G+I + +LG L L + T + ++
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRM 51
Score = 32.6 bits (75), Expect = 0.005
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
D K +D DG + +EL L +LG + EV ++ + +D D DGF+ +
Sbjct: 11 ADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPD-EVRRMMAE-IDT-DGDGFISF 65
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 35.1 bits (81), Expect = 0.002
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 25/115 (21%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPT--------LATIEKL------GGTKKKV 47
+ F + + ++ A +L +L + + T + T K
Sbjct: 7 RRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG 65
Query: 48 YEDFL----------ECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQ 92
+E+F K +D GT+ +EL + G + E + +++
Sbjct: 66 FEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIR 120
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 33.7 bits (78), Expect = 0.002
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+D K +D DG + +EL L +LG + EV ++ + +D D DGF+ +
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSAD-EVQRMMAE-IDT-DGDGFIDF 57
Score = 32.2 bits (74), Expect = 0.005
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPT 33
F +DT G+G+I +L L L
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTLGSTSA 37
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 34.7 bits (80), Expect = 0.002
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 49/150 (32%)
Query: 2 KFAFDIYDTEGNGQIDAVDL----GRVLYALNLNPTLATIEKLGGTKKKV---------- 47
K FD +D +GNG ++ D + A + A ++ L +
Sbjct: 10 KKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGV 69
Query: 48 -------YEDFL------------------------ECLKLYDKQEDGTMLGAELHHILI 76
E F+ + + DK DG + E L
Sbjct: 70 GSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLT 129
Query: 77 SLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+LG M ++E E +D + +G +
Sbjct: 130 ALG--MSKAEAAEAFNQ-VDT-NGNGELSL 155
Score = 31.6 bits (72), Expect = 0.028
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNP 32
K + D +GQI+A + L AL ++
Sbjct: 104 VKGIVGMCDKNADGQINADEFAAWLTALGMSK 135
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 33.5 bits (77), Expect = 0.002
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPT 33
F D +G+++ + + L + P
Sbjct: 32 VFAACDANRSGRLEREEFRALCTELRVRPA 61
Score = 26.9 bits (60), Expect = 0.71
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
D G + E + L + ++ V Q LDA D DG + +
Sbjct: 27 ARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQR-LDA-DRDGAITF 80
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 33.8 bits (78), Expect = 0.004
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 37/136 (27%)
Query: 4 AFDIYDTEGNGQIDAVDL-----------GRVLYALNLNPTLATIEKL--------GGT- 43
F D G+GQ+D +L G + L+ + A ++ + G
Sbjct: 45 IFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYI 104
Query: 44 -----------KKKVY--EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEV 90
K+ + E L + +D G + EL + +++ ++V
Sbjct: 105 EYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFG--VTEVDDETWHQV 162
Query: 91 LQDCLDAEDEDGFVQY 106
LQ+C D + DG V +
Sbjct: 163 LQEC-DK-NNDGEVDF 176
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 34.0 bits (78), Expect = 0.004
Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 46/147 (31%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYAL--NLNPTLATIEKLGGTKKKV------------ 47
FD +D + +G+++ ++ + +N T +EK+ +
Sbjct: 39 YKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGL 98
Query: 48 -YEDFLE---------------------------CLKLYDKQEDGTMLGAELHHILISLG 79
ED++E + D DGT+ EL ++ +
Sbjct: 99 LREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD 158
Query: 80 ERMEESEVNEVLQDCLDAEDEDGFVQY 106
+ + + D D+ G ++
Sbjct: 159 --VPQEAAYTFFEK-ADT-DKSGKLER 181
Score = 30.9 bits (70), Expect = 0.055
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLN 31
+ +D+ D +G+G +D +L ++ A ++
Sbjct: 130 SNSYYDVLDDDGDGTVDVDELKTMMKAFDVP 160
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 32.7 bits (75), Expect = 0.008
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 16/100 (16%)
Query: 8 YDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTML 67
+ + D+ V+ EK+ + + + L E +
Sbjct: 12 TTSTTKMETKYEDMLPVM-----------AEKMDVEEFV--SELCKGFSLLADPERHLIT 58
Query: 68 GAELHHILISLG-ERMEESEVNEVLQDCLDAEDEDGFVQY 106
L LG E M + + ++++ D D DG +
Sbjct: 59 AESLRRNSGILGIEGMSKEDAQGMVREG-DL-DGDGALNQ 96
Score = 25.8 bits (57), Expect = 2.7
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYAL 28
F + I A L R L
Sbjct: 45 GFSLLADPERHLITAESLRRNSGIL 69
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 33.2 bits (76), Expect = 0.008
Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 42/143 (29%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTL--------------------------- 34
K F+ D + +G I +D + +
Sbjct: 9 KTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGK 68
Query: 35 ---------ATIEKLGGTK-KKVYEDFLECL-KLYDKQEDGTMLGAELHHILISLGERME 83
+ E + + K V E L + D ED + E LG ++
Sbjct: 69 GIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--LD 126
Query: 84 ESEVNEVLQDCLDAEDEDGFVQY 106
++ +D + DG +
Sbjct: 127 KTMAPASFDA-IDT-NNDGLLSL 147
Score = 29.7 bits (67), Expect = 0.11
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLA 35
F DT + I + G L L+ T+A
Sbjct: 96 LPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMA 130
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 32.8 bits (75), Expect = 0.009
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYAL 28
+ +AF I+D + +G ++ DL R++ L
Sbjct: 100 SHYAFRIFDFDDDGTLNREDLSRLVNCL 127
Score = 26.3 bits (58), Expect = 2.1
Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 19/108 (17%)
Query: 1 AKFAFDIYDT-EGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYD 59
+ ++ T + D +L + K + F +++D
Sbjct: 62 KERICRVFSTSPAKDSLSFEDFLDLL---------SVFSDTATPDIKSHYAF----RIFD 108
Query: 60 KQEDGTMLGAELHHILISL-----GERMEESEVNEVLQDCLDAEDEDG 102
+DGT+ +L ++ L R+ SE+ +++ + L+ D D
Sbjct: 109 FDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 156
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 31.4 bits (72), Expect = 0.013
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGER-MEESEVNEVLQDCLDAEDEDGFVQY 106
E+ L K++D DG + E I+ +GE + ++EV E +++ D D +G +
Sbjct: 8 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKE-ADE-DGNGVIDI 64
Score = 31.0 bits (71), Expect = 0.021
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNP 32
AF ++D G+G ID + ++ + P
Sbjct: 13 AFKVFDANGDGVIDFDEFKFIMQKVGEEP 41
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 32.1 bits (73), Expect = 0.018
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYAL 28
+ +AF I+D + +G ++ DL R++ L
Sbjct: 131 SHYAFRIFDFDDDGTLNREDLSRLVNCL 158
Score = 29.1 bits (65), Expect = 0.22
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 5 FDIYDT-EGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQED 63
++ T + D +L + K + F +++D +D
Sbjct: 97 CRVFSTSPAKDSLSFEDFLDLL---------SVFSDTATPDIKSHYAF----RIFDFDDD 143
Query: 64 GTMLGAELHHILISL-----GERMEESEVNEVLQDCLDAEDEDG 102
GT+ +L ++ L R+ SE+ +++ + L+ D D
Sbjct: 144 GTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 187
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.033
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 3/17 (17%)
Query: 25 LYALNLNPTL---ATIE 38
LYA + P L AT+E
Sbjct: 31 LYADDSAPALAIKATME 47
Score = 26.1 bits (56), Expect = 2.2
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 8/22 (36%)
Query: 38 EKLGGTKKKVYEDFLE-CLKLY 58
EK KK L+ LKLY
Sbjct: 18 EK-QALKK------LQASLKLY 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.034
Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 30/129 (23%)
Query: 4 AFDIYDTEGNGQIDAV---DLG-RVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYD 59
A D+++ + D G +L + NP TI G K++ E++ +++
Sbjct: 1642 AQDVWN-----RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA--MIFE 1694
Query: 60 KQEDGTM----LGAELHHILISLGERMEESEVN--EVLQDCLDA------ED--EDGFVQ 105
DG + + E++ S R E+ ++ + Q L ED G +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 106 ----YA-HS 109
+A HS
Sbjct: 1755 ADATFAGHS 1763
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 31.3 bits (71), Expect = 0.037
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
A FD++D + NG I+ + + +L + A + + KV F KLYD
Sbjct: 76 ADRIFDVFDVKRNGVIEFGEF---VRSLGVFHPSAPVHE------KVKFAF----KLYDL 122
Query: 61 QEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDA------EDEDGFVQY 106
++ G + EL ++++L E ++++ +D DG +
Sbjct: 123 RQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDI 174
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 30.7 bits (69), Expect = 0.058
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
A+ F +D+ +G +D + + AL++ T +KL LYD
Sbjct: 73 AQHVFRSFDSNLDGTLDFKE---YVIALHMTTAGKTNQKLE-----------WAFSLYDV 118
Query: 61 QEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAED 99
+GT+ E+ I++++ + + +V + D E
Sbjct: 119 DGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEK 157
Score = 27.6 bits (61), Expect = 0.68
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 3 FAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQE 62
+AF +YD +GNG I ++ ++ A+ T ++ L + + + K + K +
Sbjct: 111 WAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKND 170
Query: 63 DG 64
D
Sbjct: 171 DD 172
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 30.8 bits (70), Expect = 0.067
Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 38/141 (26%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKV-------------- 47
F DT +G +D +L R + + + + +
Sbjct: 334 TEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMD 393
Query: 48 ------YEDFL----------------ECLKLYDKQEDGTMLGAELHHILISLGERMEES 85
Y +F+ K++DK G + EL + ++
Sbjct: 394 GSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQME 453
Query: 86 EVNEVLQDCLDAEDEDGFVQY 106
E+ +++ D ++DG V +
Sbjct: 454 ELESIIEQV-DN-NKDGEVDF 472
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 29.5 bits (67), Expect = 0.069
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 49 EDFLECLKLYDKQED--GTMLGAELHHILISLGERM--EESEVNEVLQDCLDAEDEDGFV 104
E+ +++ +E + EL ++ +LG + S ++E++++ +D + DG V
Sbjct: 5 EEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEE-VDK-NGDGEV 62
Query: 105 QY 106
+
Sbjct: 63 SF 64
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 30.5 bits (69), Expect = 0.074
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 22/112 (19%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
++ +DT +G +D ++ + A+NL +KL KLYD
Sbjct: 59 IDQVYNTFDTNKDGFVDFLEF---IAAVNLIMQEKMEQKL-----------KWYFKLYDA 104
Query: 61 QEDGTMLGAELHHILISLGERMEESE------VNEVLQDCLDAEDEDGFVQY 106
+G++ EL + +++ + +N V +D + DG +
Sbjct: 105 DGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHK-ID-INNDGELTL 154
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 29.9 bits (68), Expect = 0.076
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 42 GTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL---GERMEESEVNEVLQDCLDAE 98
G K +D + + D+ + G + EL L + ++E L+ D+
Sbjct: 35 GLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG-DS- 92
Query: 99 DEDGFVQY 106
D DG +
Sbjct: 93 DGDGAIGV 100
Score = 24.5 bits (54), Expect = 5.7
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALN 29
K AF + D + +G I+ +L L +
Sbjct: 45 KKAFFVIDQDKSGFIEEDELKLFLQVFS 72
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 30.2 bits (68), Expect = 0.076
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLA 35
F FD+ DT G+ ID + V + + +
Sbjct: 111 MNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDC 145
Score = 29.4 bits (66), Expect = 0.17
Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDG 64
D + Q+ + + + ++EK + + + + D D
Sbjct: 70 RKYADENEDEQVTKEE-----WLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDN 124
Query: 65 TMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYA 107
+ E + +S G + +S+ + L V
Sbjct: 125 IIDKHEYSTVYMSYG--IPKSDCDAAFDT-LSD-GGKTMVTRE 163
Score = 28.3 bits (63), Expect = 0.36
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 7/108 (6%)
Query: 2 KFAFD-IYDTEGNGQIDAVDLGRVLYAL-NLNPTLATIEKLGGTKKKVYEDFLECLKLYD 59
F+ YD +G I+ D + + NL+ +K + + + K D
Sbjct: 15 LRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYAD 74
Query: 60 KQEDGT-----MLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+ ED L + + + + D D G
Sbjct: 75 ENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSG 122
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 30.2 bits (68), Expect = 0.090
Identities = 14/136 (10%), Positives = 35/136 (25%), Gaps = 35/136 (25%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLY-ALNLNPTLATIEKLGGTKKKV--------------- 47
F +D G++ ++ L L+ + + +
Sbjct: 53 LFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSED 112
Query: 48 YEDFLECL----------------KLYDKQEDGTMLGAELHHILISLG-ERMEESEVNEV 90
+ +FLE D + + E + L + + +
Sbjct: 113 FVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAAL 172
Query: 91 LQDCLDAEDEDGFVQY 106
++ D + G V +
Sbjct: 173 FKEL-DK-NGTGSVTF 186
Score = 26.4 bits (58), Expect = 1.9
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILI-SLGERMEESEVNEVLQDCLDAE-------DE 100
+ +E K +DK E G + E++ + L S V ++ + D +
Sbjct: 48 QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLEN 107
Query: 101 DGFVQY 106
G +
Sbjct: 108 KGSEDF 113
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 30.2 bits (68), Expect = 0.10
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYAL 28
F+F +YD + G I+ ++ +++ A
Sbjct: 125 HFSFQLYDLKQQGFIERQEVKQMVVAT 151
Score = 28.2 bits (63), Expect = 0.43
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDG 64
FD++DT+ NG + + AL++ A I+ K++ F +LYD ++ G
Sbjct: 91 FDLFDTKHNGILGFEEF---ARALSVFHPNAPIDD------KIHFSF----QLYDLKQQG 137
Query: 65 TMLGAELHHILISLGERMEESEVNEVLQDCLDA------EDEDGFVQY 106
+ E+ ++++ + + V++D +D DG +
Sbjct: 138 FIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDK 185
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 30.3 bits (67), Expect = 0.12
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 49 EDFLECLKLYDKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQY 106
+F +D+++ G M + LIS+G M E+E ++ + G V +
Sbjct: 725 NEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIV--DPNRMGVVTF 780
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 29.1 bits (66), Expect = 0.14
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 42 GTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL---GERMEESEVNEVLQDCLDAE 98
G K D + K D G + EL +L S G + ++E L+ D
Sbjct: 35 GLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA-DK- 92
Query: 99 DEDGFVQY 106
D DG +
Sbjct: 93 DGDGKIGI 100
Score = 25.6 bits (57), Expect = 2.3
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALN 29
F D + +G I+ +L VL +
Sbjct: 47 VFKAIDADASGFIEEEELKFVLKSFA 72
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 29.8 bits (67), Expect = 0.15
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 15 QIDAV--DLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAELH 72
I + DLG VL L+ + +K+G + + ++ +QE G + AE
Sbjct: 27 GIKNLLIDLGGVLINLDRERCIENFKKIGFQNIEEKFCTHQLDGIFLQQEKGLITPAEFR 86
Query: 73 HILIS-LGERMEESEVNEVLQDCLDAEDED 101
+ +G+ + + +++ L
Sbjct: 87 DGIREMMGKMVSDKQIDAAWNSFLVDIPTY 116
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 29.4 bits (66), Expect = 0.15
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 22/110 (20%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
A+ F +D G+G ID + + AL++ +KL +YD
Sbjct: 65 AEHVFRTFDANGDGTIDFREF---IIALSVTSRGKLEQKL-----------KWAFSMYDL 110
Query: 61 QEDGTMLGAELHHILISLGERM--------EESEVNEVLQDCLDAEDEDG 102
+G + AE+ I+ ++ + + +ES + + D +
Sbjct: 111 DGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNR 160
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 29.4 bits (66), Expect = 0.17
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVL---YALNLNPTLATIEKLGGTKKKVYEDFLECLKLY 58
K+ F IYD + NG ID +L ++ Y L ++ + G E L
Sbjct: 98 KWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLV 157
Query: 59 DKQEDGTMLGAELHHILISLGERMEESEVNEVLQDCL 95
D+ DG +SL E +E + ++ + L
Sbjct: 158 DENGDGQ----------LSLNEFVEGARRDKWVMKML 184
Score = 27.9 bits (62), Expect = 0.55
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
+ F +DT G+ ID ++ + ALNL KL K+YDK
Sbjct: 61 VEAMFRAFDTNGDNTIDFLEY---VAALNLVLRGTLEHKL-----------KWTFKIYDK 106
Query: 61 QEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFV 104
+G + EL I+ S+ + + V + + V
Sbjct: 107 DRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVV 150
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 28.6 bits (64), Expect = 0.21
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNL-NPTLATIEKLGGTKKKVY---EDFLECLKLYDK 60
F+ +D +G + +L +L LA+I L + E+F+ + L D
Sbjct: 20 FNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDV 79
Query: 61 QEDGTMLGAEL 71
G L L
Sbjct: 80 AMSGQPLPPVL 90
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 28.4 bits (64), Expect = 0.23
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 42 GTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL---GERMEESEVNEVLQDCLDAE 98
G KK E ++ D + G + EL + L + SE L D
Sbjct: 34 GMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAA-DH- 91
Query: 99 DEDGFVQY 106
D DG +
Sbjct: 92 DGDGKIGA 99
Score = 27.6 bits (62), Expect = 0.40
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIE 38
K F I D + +G I+ +L L + T
Sbjct: 44 KEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTAS 80
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 28.7 bits (64), Expect = 0.28
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNP 32
F F D G+G +D + L
Sbjct: 107 IPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQC 138
Score = 28.3 bits (63), Expect = 0.40
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 7/108 (6%)
Query: 2 KFAFD-IYDTEGNGQIDAVDLGRVLYAL-NLNPTLATIEKLGGTKKKVYEDFLECLKLYD 59
KF FD D +G I D ++ +N + + + +++ + D
Sbjct: 11 KFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRAD 70
Query: 60 KQEDGTM-----LGAELHHILISLGERMEESEVNEVLQDCLDAEDEDG 102
+D + L I + + D G
Sbjct: 71 INKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSG 118
Score = 25.3 bits (55), Expect = 5.0
Identities = 11/103 (10%), Positives = 26/103 (25%), Gaps = 9/103 (8%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDG 64
D + + + + T+AT + + K D DG
Sbjct: 66 KGRADINKDDVVSWEEYLAMWEK-----TIATCKSVADLPAWCQNRIPFLFKGMDVSGDG 120
Query: 65 TMLGAELHHILISLGERMEESEVNEVLQDCLDAEDEDGFVQYA 107
+ E + + ++ ++V V +
Sbjct: 121 IVDLEEFQNYCKNFQ--LQCADVPAVYNV-ITD-GGKVTFDLN 159
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 28.0 bits (63), Expect = 0.29
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
K F I D + +G I+ +LG +L + + + ++
Sbjct: 44 KKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKET 82
Score = 27.6 bits (62), Expect = 0.48
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 42 GTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL---GERMEESEVNEVLQDCLDAE 98
G KKK +D + + DK + G + EL IL + E ++ A
Sbjct: 34 GLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMA----AG 89
Query: 99 DEDG 102
D+DG
Sbjct: 90 DKDG 93
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 27.9 bits (63), Expect = 0.32
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 42 GTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL---GERMEESEVNEVLQDCLDAE 98
G K K E ++ DK + G + EL +L G + ++E +L D+
Sbjct: 34 GLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG-DS- 91
Query: 99 DEDGFVQY 106
D DG +
Sbjct: 92 DHDGKIGA 99
Score = 26.0 bits (58), Expect = 1.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALN 29
K F+I D + +G I+ +L VL +
Sbjct: 44 KEVFEILDKDQSGFIEEEELKGVLKGFS 71
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 27.9 bits (63), Expect = 0.40
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 42 GTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL---GERMEESEVNEVLQDCLDAE 98
G K +D + + D+ + G + EL L + + ++E L D D
Sbjct: 34 GLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLAD-GDK- 91
Query: 99 DEDGFVQY 106
D DG +
Sbjct: 92 DGDGMIGV 99
Score = 25.2 bits (56), Expect = 3.2
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLN 31
AF + D + +G I+ +L L + +
Sbjct: 46 AFYVIDQDKSGFIEEDELKLFLQNFSPS 73
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 28.2 bits (63), Expect = 0.44
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
+ F+ +D +G ID ++ + AL+L +KL KLYD
Sbjct: 54 VEQMFETFDFNKDGYIDFMEY---VAALSLVLKGKVDQKL-----------RWYFKLYDV 99
Query: 61 QEDGTMLGAELHHILISLGERMEESEVNEVLQDCLDA------EDEDGFVQY 106
+G + EL +I+ ++ + ++ + + DG +
Sbjct: 100 DGNGCIDRGELLNIIKAIRA-INRCNEAMTAEEFTNMVFDKIDINGDGELSL 150
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 27.1 bits (60), Expect = 0.63
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNL-NPTLATIEKLGGTKKKVY---EDFLECLKL 57
+ + G++ A+D L L + L I L T K ++F L+L
Sbjct: 17 YRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRL 73
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 27.2 bits (61), Expect = 0.70
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIE 38
K F I D + +G I+ +L L + + + T
Sbjct: 45 KKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSA 81
Score = 26.5 bits (59), Expect = 1.4
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 42 GTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISLG---ERMEESEVNEVLQDCLDAE 98
G K + + + D+ + G + EL L + + +E L D
Sbjct: 35 GLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG-DT- 92
Query: 99 DEDGFVQY 106
D DG +
Sbjct: 93 DGDGKIGV 100
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 27.2 bits (61), Expect = 0.71
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 42 GTKKKVYEDFLECLKLYDKQEDGTMLGAELHHILISL---GERMEESEVNEVLQDCLDAE 98
G K + + D + G + G EL + L + ESE + +DA
Sbjct: 34 GLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSL----MDAA 89
Query: 99 DEDG 102
D DG
Sbjct: 90 DNDG 93
Score = 26.9 bits (60), Expect = 0.83
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIE 38
K F D + +G +D +L L + T
Sbjct: 44 KDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTES 80
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 27.0 bits (60), Expect = 0.82
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNL-NPTLATIEKLGGTKKKVY---EDFLECLKL-YD 59
F D + +G + +++ + L + LA I L TK + F L
Sbjct: 16 FLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQ 75
Query: 60 KQEDGTMLGAEL 71
K G L
Sbjct: 76 KLIKGIDPPHVL 87
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 27.3 bits (60), Expect = 0.84
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 16/113 (14%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
+ ++YDT G+I + + +L + Y + +
Sbjct: 134 LNWLLNVYDTGRTGRIRVLSFKTGIISL-----------CKAHLEDKYRYLFKQVASSTG 182
Query: 61 QEDGTMLGAELHH---ILISLGE--RMEESEVNEVLQDCLDAEDEDGFVQYAH 108
D LG LH I LGE S + ++ C + ++ A
Sbjct: 183 FCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAAL 235
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 27.4 bits (61), Expect = 0.94
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVL 25
+ AF+++DT+ +G+I +L +
Sbjct: 437 LRRAFNLFDTDKSGKITKEELANLF 461
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 27.1 bits (60), Expect = 1.0
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYAL-NLNPTLATIEKLGGTKKKVYEDFLECLKLYD 59
++AF +YD + +G I ++ ++ A+ + + + T +K + + D
Sbjct: 101 LRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFA---MMD 157
Query: 60 KQEDGTM 66
K DG +
Sbjct: 158 KNADGKL 164
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 26.9 bits (59), Expect = 1.3
Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 24/116 (20%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
A + F+ +DT G + D + AL++ EKL LYD
Sbjct: 91 AHYLFNAFDTTQTGSVKFEDF---VTALSILLRGTVHEKLR-----------WTFNLYDI 136
Query: 61 QEDGTMLGAELHHILISL----GERMEESEVNEVLQDCLDA------EDEDGFVQY 106
+DG + E+ I+ ++ G+ + + +D +++DG V
Sbjct: 137 NKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTL 192
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 26.7 bits (59), Expect = 1.4
Identities = 21/116 (18%), Positives = 49/116 (42%), Gaps = 24/116 (20%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
A++ F+++D + NG I D + AL++ +KL + +LYD
Sbjct: 65 AEYVFNVFDADKNGYI---DFKEFICALSVTSRGELNDKL-----------IWAFQLYDL 110
Query: 61 QEDGTMLGAELHHILISL----GERMEESEVNEVLQDCLDA------EDEDGFVQY 106
+G + E+ I+ ++ G ++ E + + ++ +++DG +
Sbjct: 111 DNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTL 166
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 26.2 bits (58), Expect = 1.4
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNL-NPTLATIEKLGGTKKKVY---EDFLECLKLYDK 60
F + NG I L L+ I +L K ++F L
Sbjct: 15 FKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVA 74
Query: 61 QEDGTMLGAEL 71
+++G L +L
Sbjct: 75 RKNGYDLPEKL 85
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 26.8 bits (59), Expect = 1.5
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 24/116 (20%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
A F F+ +DT+ NG + D + L++ EKL LYD
Sbjct: 104 AHFLFNAFDTDHNGAVSFEDF---IKGLSILLRGTVQEKLN-----------WAFNLYDI 149
Query: 61 QEDGTMLGAELHHILISL----GERMEESEVNEVLQDCLDA------EDEDGFVQY 106
+DG + E+ I+ ++ G+ + + ++ +++DG V
Sbjct: 150 NKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTI 205
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 26.2 bits (58), Expect = 1.8
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 15 QIDAV--DLGRVLYALNLNPTLATIEKLGGTK-KKVYEDFLECLKLYDKQEDGTMLGAEL 71
I + DLG VL LN ++ + +G +++ + +L+ L+ E G E
Sbjct: 4 MIRNIVFDLGGVLIHLNREESIRRFKAIGVADIEEMLDPYLQK-GLFLDLESGRKSEEEF 62
Query: 72 HHILI-SLGERMEESEVNEVLQDCL 95
L +G+ + +V + L L
Sbjct: 63 RTELSRYIGKELTYQQVYDALLGFL 87
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla
reticulum, ER-golgi transport; 1.84A {Homo sapiens}
PDB: 2vrg_A 3lcp_C
Length = 143
Score = 26.1 bits (57), Expect = 2.0
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 3 FAFDIYDTEGNGQIDAVDLGRVLYALN 29
F ++D +GN +D ++L + ++
Sbjct: 72 HYFKMHDYDGNNLLDGLELSTAITHVH 98
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 26.1 bits (58), Expect = 2.5
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 13 NGQIDAV--DLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDKQEDGTMLGAE 70
DLG V+ ++ N L L + + + + E G +
Sbjct: 4 KEAKMLYIFDLGNVIVDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEA 63
Query: 71 LHHILIS-LGERMEESEVNEVLQDCLDAEDED 101
L + + + + Q A +
Sbjct: 64 FAEALCHEMALPLSYEQFSHGWQAVFVALRPE 95
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 26.2 bits (58), Expect = 2.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVL 25
+ AF +D +GNG+I +L V
Sbjct: 429 ESAFQKFDQDGNGKISVDELASVF 452
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 26.0 bits (57), Expect = 2.7
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVLYAL 28
+AF++YD +G I ++ ++ ++
Sbjct: 102 SWAFELYDLNHDGYITFDEMLTIVASV 128
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 25.5 bits (56), Expect = 2.8
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 4/71 (5%)
Query: 5 FDIYDTEGNGQIDAVDLGRVLYALNL-NPTLATIEKLGGTKKK---VYEDFLECLKLYDK 60
F + + I L P L+ I +L +F L
Sbjct: 28 FRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVA 87
Query: 61 QEDGTMLGAEL 71
+++G L L
Sbjct: 88 RKNGYPLPEGL 98
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 25.8 bits (57), Expect = 3.1
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVL 25
+ AF ++D++ +G+I + +L +
Sbjct: 421 ERAFRMFDSDNSGKISSTELATIF 444
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 25.9 bits (56), Expect = 3.4
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 17/80 (21%)
Query: 2 KFAFDIYDTEGNGQIDAVDLGRVL----YALNLNPTLATIEKLGGTKKKV--YEDFLECL 55
+ + ++T+ +G I + +L + LN + I + + +++F+ CL
Sbjct: 807 QGIYKRFETDRSGTIGSNELPGAFEAAGFHLN-QHIYSMIIRRYSDETGNMDFDNFISCL 865
Query: 56 ----------KLYDKQEDGT 65
+ DK G
Sbjct: 866 VRLDAMFRAFRSLDKNGTGQ 885
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 25.5 bits (56), Expect = 3.7
Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 24/116 (20%)
Query: 1 AKFAFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKLGGTKKKVYEDFLECLKLYDK 60
A + F+ +DT G + D + AL++ EKL LYD
Sbjct: 58 AHYLFNAFDTTQTGSVKFEDF---VTALSILLRGTVHEKLR-----------WTFNLYDI 103
Query: 61 QEDGTMLGAELHHILISL----GERMEESEVNEVLQDCLDA------EDEDGFVQY 106
+DG + E+ I+ ++ G+ + + +D +++DG V
Sbjct: 104 NKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTL 159
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus
musculus}
Length = 75
Score = 24.7 bits (54), Expect = 4.4
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 45 KKVYEDFLECLKLYDKQ 61
+ YE+FL CL +++++
Sbjct: 25 AEAYENFLRCLVIFNQE 41
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 23.3 bits (51), Expect = 9.2
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 4 AFDIYDTEGNGQIDAVDLGRVLYALNLNPTLATIEKL 40
F D G+G + ++ + ++ +
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLI 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.137 0.387
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,734,976
Number of extensions: 93266
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 271
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)