BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10942
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 100 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 155 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 208
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 209 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 258 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQ---------- 367
GH K ++ V SPN + LAS S DK +K+W G K + GHK G
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 101
Query: 368 IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRIL 427
+VS D LK+W + + C+ T H + V+ NF+P ++
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGH-----------------SNYVFCCNFNPQSNLI 144
Query: 428 ISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTST 487
+S S D ++++W + CLK+L H V HF G+ IVS+ DGL ++W +
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 488 CVSTF 492
C+ T
Sbjct: 205 CLKTL 209
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 100
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 101 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHS 171
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 240
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 241 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 300 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 330
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 92
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 102 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 157 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 210
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 211 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 260 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQ---------- 367
GH K ++ V SPN + LAS S DK +K+W G K + GHK G
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 103
Query: 368 IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRIL 427
+VS D LK+W + + C+ T H + V+ NF+P ++
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGH-----------------SNYVFCCNFNPQSNLI 146
Query: 428 ISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTST 487
+S S D ++++W + CLK+L H V HF G+ IVS+ DGL ++W +
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 488 CVSTF 492
C+ T
Sbjct: 207 CLKTL 211
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 102
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 103 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 147
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHS 173
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 242
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 243 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 302 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 332
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 95 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 150 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 203
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 204 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 252
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 253 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 89
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 90 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 95
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 96 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 140
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHS 166
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 180 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 235
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 236 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 295 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 325
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 136 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 189
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 190 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 239 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 75
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 76 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 350 TGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQ 409
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN- 81
Query: 410 IITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQI 469
+L+S+S D T+K+W ++ CLK+L+GH V C+F + I
Sbjct: 82 ----------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 470 VSTGADGLLKLWSIKTSTCVSTFDKHA 496
VS D +++W +KT C+ T H+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHS 152
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 222 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 394 HALKIWTLAITKDENQIITGGV 415
H + + A EN I + +
Sbjct: 281 HTDVVISTACHPTENIIASAAL 302
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 136 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 189
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 190 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 239 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 75
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 76 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 350 TGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQ 409
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN- 81
Query: 410 IITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQI 469
+L+S+S D T+K+W ++ CLK+L+GH V C+F + I
Sbjct: 82 ----------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 470 VSTGADGLLKLWSIKTSTCVSTFDKHA 496
VS D +++W +KT C+ T H+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHS 152
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 222 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 394 HALKIWTLAITKDENQIITGGV 415
H + + A EN I + +
Sbjct: 281 HTDVVISTACHPTENIIASAAL 302
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 84 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 139 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 192
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 193 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 242 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 78
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 79 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 84
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 85 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHS 155
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 225 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 284 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 314
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 136 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 189
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 190 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 239 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LA+ S DK +K+W G K + GHK G V+
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 75
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 76 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 350 TGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQ 409
G K ++ ++ G + ++ AD L+K+W T H L I +A + D N
Sbjct: 23 AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN- 81
Query: 410 IITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQI 469
+L+S+S D T+K+W ++ CLK+L+GH V C+F + I
Sbjct: 82 ----------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 470 VSTGADGLLKLWSIKTSTCVSTFDKHA 496
VS D +++W +KT C+ T H+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHS 152
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 222 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 281 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 84 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 139 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 192
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 193 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 242 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 78
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 79 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 84
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 85 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHS 155
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 225 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 284 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 314
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 83 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 138 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 191
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 192 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 240
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 241 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 77
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 78 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 83
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 84 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 128
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHS 154
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 223
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 224 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 283 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 313
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 75
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 79 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 134 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 187
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 188 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 237 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 73
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 74 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 79
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 80 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 124
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHS 150
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 219
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 220 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 279 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 309
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 71
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 78 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 133 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 186
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 187 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 236 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQ---------- 367
GH K ++ V SPN + LAS S DK +K+W G K + GHK G
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 79
Query: 368 IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRIL 427
+VS D LK+W + + C+ T H + V+ NF+P ++
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGH-----------------SNYVFCCNFNPQSNLI 122
Query: 428 ISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTST 487
+S S D ++++W + CLK+L H V HF G+ IVS+ DGL ++W +
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 488 CVSTF 492
C+ T
Sbjct: 183 CLKTL 187
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 78
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 79 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHS 149
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 219 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 278 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 308
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 84 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 139 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 192
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 193 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 242 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 78
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 79 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 84
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 85 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHS 155
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 225 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 284 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 314
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 74 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 129 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 182
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 183 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 232 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 68
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 69 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 74
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 75 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 119
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHS 145
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 214
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 215 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 274 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 304
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 77 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 132 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 185
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 186 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-K 233
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
+ C F N G IVS D L+ +W+++T V H
Sbjct: 234 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 71
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 72 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 77
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 78 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHS 148
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 217
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 218 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 277 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 307
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 37/224 (16%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 78 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 346 VWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W G K L L H + G+ IVS+ DGL ++W + C+ T
Sbjct: 133 IWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT----- 186
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH
Sbjct: 187 -------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 456 SVLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D L+ +W+++T V H
Sbjct: 236 EKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLL 377
GH K ++ V SPN + LAS S DK +K+W G K + GHK G V+
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVA------- 72
Query: 378 KLWSIKTSTCVSTFDKHALKIWTLAITKDENQII--TGGVWFVNFSPLDRILISSSGDAT 435
WS ++ VS D LKIW ++ K + + V+ NF+P +++S S D +
Sbjct: 73 --WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 436 IKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
+++W + CLK+L H V HF G+ IVS+ DGL ++W + C+ T
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 78
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 79 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHS 149
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D L+ +W+++T V
Sbjct: 219 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 278 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 308
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 146/357 (40%), Gaps = 49/357 (13%)
Query: 181 LVKLGANRSHNEWFDKTFERILEAKFKQSSSQQKHNTE-----RLGRDELKTVTLLERGK 235
+ K A NE DK + +LE K+ QK E ++E + L + +
Sbjct: 30 VFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEFTSGGPLGQKR 89
Query: 236 TVKEEDLFPRQSMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAF----YTGGTVE----- 286
KE P + S R +H P+F + V +E Y G E
Sbjct: 90 DPKEWIPRPPEKYALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKG 148
Query: 287 ---------------LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPN 331
LLAS S D T+K+W G + + + GH + +++ V++ PN
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHGH----DHNVSSVSIMPN 203
Query: 332 DKLLASGSLDKTVKVWST---------TGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSI 382
+ S S DKT+K+W TG + + ++R ++ GT I S D +++W +
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 383 KTSTCVSTFDKHALKI----WTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKL 438
T C + +H + W + TG + P L+S S D TIK+
Sbjct: 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPFLLSGSRDKTIKM 322
Query: 439 WCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
W ++ +CL +L GHD V F + G I+S D L++W K C+ T + H
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 17/133 (12%)
Query: 368 IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRIL 427
+VS D +K+W +T T H T V ++F ++L
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGH-----------------TDSVQDISFDHSGKLL 165
Query: 428 ISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTST 487
S S D TIKLW + C++++ GHD +V + G IVS D +K+W ++T
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 488 CVSTFDKHALKIR 500
CV TF H +R
Sbjct: 226 CVKTFTGHREWVR 238
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 17 EFSVHCGRDKVLFTWDLSSRKQLRSYPAYESLETCAVFH 55
+F + C DK L WD +++ +++ A+E T FH
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 35/223 (15%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 346 VWSTTGGLKL---------LNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHAL 396
+W G+ L ++ + ++ G+ IVS+ DGL ++W + C+ T
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------ 189
Query: 397 KIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDAS 456
+ D+N ++ FV FSP + +++++ D T+KLW + CLK+ GH +
Sbjct: 190 ------LIDDDNPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KN 238
Query: 457 VLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D ++ +W+++T V H
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQ---------- 367
GH K ++ V SPN + LAS S DK +K+W G K + GHK G
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 82
Query: 368 IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRIL 427
+VS D LK+W + + C+ T H + V+ NF+P ++
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGH-----------------SNYVFCCNFNPQSNLI 125
Query: 428 ISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTST 487
+S S D ++++W + +CLK+L H V HF G+ IVS+ DGL ++W +
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 488 CVSTF 492
C+ T
Sbjct: 186 CLKTL 190
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 81
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 82 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLPAHS 152
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD T+K+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D ++ +W+++T V
Sbjct: 222 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 281 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 311
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y + +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 110/230 (47%), Gaps = 34/230 (14%)
Query: 278 AFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLAS 337
AF G + +AS S DKTVK+W+ G +LL L GH + V SP+ + +AS
Sbjct: 23 AFSPDG--QTIASASDDKTVKLWNRNG--QLLQTL----TGHSSSVWGVAFSPDGQTIAS 74
Query: 338 GSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALK 397
S DKTVK+W+ G +LL L GH + V+ DG T S D +K
Sbjct: 75 ASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDG---------QTIASASDDKTVK 123
Query: 398 IWTLAITKDEN----QIITG---GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSL 450
+W + N Q +TG VW V FSP + + S+S D T+KLW + L++L
Sbjct: 124 LW------NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTL 176
Query: 451 EGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
GH +SV F G I S D +KLW+ + + T H+ +R
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 100/208 (48%), Gaps = 25/208 (12%)
Query: 278 AFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLAS 337
AF G + +AS S DKTVK+W+ G +LL L GH +N V P+ + +AS
Sbjct: 228 AFSPDG--QTIASASDDKTVKLWNRNG--QLLQTL----TGHSSSVNGVAFRPDGQTIAS 279
Query: 338 GSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALK 397
S DKTVK+W+ G +LL L GH V+ DG T S D +K
Sbjct: 280 ASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDG---------QTIASASDDKTVK 328
Query: 398 IWTLAITKDENQIITG---GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHD 454
+W Q +TG VW V FSP + + S+S D T+KLW + L++L GH
Sbjct: 329 LWNR--NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHS 385
Query: 455 ASVLRCHFINKGTQIVSTGADGLLKLWS 482
+SV F G I S D +KLW+
Sbjct: 386 SSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 102/212 (48%), Gaps = 33/212 (15%)
Query: 278 AFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLAS 337
AF G + +AS S DKTVK+W+ G +LL L GH + V SP+ + +AS
Sbjct: 64 AFSPDG--QTIASASDDKTVKLWNRNG--QLLQTL----TGHSSSVRGVAFSPDGQTIAS 115
Query: 338 GSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALK 397
S DKTVK+W+ G +LL L GH V+ DG T S D +K
Sbjct: 116 ASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDG---------QTIASASDDKTVK 164
Query: 398 IWTLAITKDEN----QIITG---GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSL 450
+W + N Q +TG VW V FSP + + S+S D T+KLW + L++L
Sbjct: 165 LW------NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTL 217
Query: 451 EGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
GH +SV F G I S D +KLW+
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 104/212 (49%), Gaps = 33/212 (15%)
Query: 278 AFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLAS 337
AF G + +AS S DKTVK+W+ G +LL L GH + V SP+D+ +AS
Sbjct: 392 AFSPDG--QTIASASDDKTVKLWNRNG--QLLQTL----TGHSSSVWGVAFSPDDQTIAS 443
Query: 338 GSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALK 397
S DKTVK+W+ G +LL L GH + V+ DG T S D +K
Sbjct: 444 ASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDG---------QTIASASDDKTVK 492
Query: 398 IWTLAITKDEN----QIITG---GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSL 450
+W + N Q +TG V V FSP + + S+S D T+KLW + L++L
Sbjct: 493 LW------NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTL 545
Query: 451 EGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
GH +SV F G I S +D +KLW+
Sbjct: 546 TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 35/223 (15%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL S S DKT+K+W + G K L L KGH + C +P L+ SGS D++V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG-KCLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 346 VWSTTGGLKL---------LNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHAL 396
+W G+ L ++ + ++ G+ IVS+ DGL ++W + C+ T
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------ 189
Query: 397 KIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDAS 456
+ D+N ++ FV FSP + +++++ D +KLW + CLK+ GH +
Sbjct: 190 ------LIDDDNPPVS----FVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH-KN 238
Query: 457 VLRCHFIN----KGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
C F N G IVS D ++ +W+++T V H
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQ---------- 367
GH K ++ V SPN + LAS S DK +K+W G K + GHK G
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 82
Query: 368 IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRIL 427
+VS D LK+W + + C+ T H + V+ NF+P ++
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGH-----------------SNYVFCCNFNPQSNLI 125
Query: 428 ISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTST 487
+S S D ++++W + +CLK+L H V HF G+ IVS+ DGL ++W +
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 488 CVSTF 492
C+ T
Sbjct: 186 CLKTL 190
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
G K ++ ++ G + S+ AD L+K+W T H L I +A + D N
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 81
Query: 411 ITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV 470
+L+S+S D T+K+W ++ CLK+L+GH V C+F + IV
Sbjct: 82 ---------------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 471 STGADGLLKLWSIKTSTCVSTFDKHA 496
S D +++W +KT C+ T H+
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLPAHS 152
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 33/166 (19%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
L+ S S D ++W T G L ++ ++ V SPN K + + +LD +K+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNDLKL 221
Query: 347 WSTTGGLKLLNVLRGHKK-------------GTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
W + G K L GHK G IVS D ++ +W+++T V
Sbjct: 222 WDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
H + + A EN I + + D TIKLW
Sbjct: 281 HTDVVISTACHPTENIIASAAL---------------ENDKTIKLW 311
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 443 DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
+Y + +L GH +V F G + S+ AD L+K+W T H L I +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 44/232 (18%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
++ SGS D+T+KVW+ G + ++ L GH + C+ + ++K + SGS D T++V
Sbjct: 171 IIISGSTDRTLKVWNAETG-ECIHTLYGHTS----TVRCMHL--HEKRVVSGSRDATLRV 223
Query: 347 WSTTGGLKLLNVLRGH--------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKI 398
W G + L+VL GH G ++VS D ++K+W +T TC+ T H ++
Sbjct: 224 WDIETG-QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282
Query: 399 WTLAITKDENQIITGG------VWFVNFSPL-----------------DRILISSSGDAT 435
++L D +++G VW V D IL+S + D+T
Sbjct: 283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADST 340
Query: 436 IKLWCLTDYVCLKSLEGHD--ASVLRCHFINKGTQIVSTGADGLLKLWSIKT 485
+K+W + CL++L+G + S + C NK ++++ DG +KLW +KT
Sbjct: 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-VITSSDDGTVKLWDLKT 391
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 37/216 (17%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
+ SGS D T+KVWS G K L L GH G + D ++ SGS D+T+KVW
Sbjct: 132 IVSGSDDNTLKVWSAVTG-KCLRTLVGHTGG------VWSSQMRDNIIISGSTDRTLKVW 184
Query: 348 STTGGLKLLNVLRGHKKGTQ--------IVSTGADGLLKLWSIKTSTCVSTFDKHALKIW 399
+ G + ++ L GH + +VS D L++W I+T C+ H +
Sbjct: 185 NAETG-ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV- 242
Query: 400 TLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLR 459
+ D ++++G D +K+W CL +L+GH V
Sbjct: 243 -RCVQYDGRRVVSGAY-----------------DFMVKVWDPETETCLHTLQGHTNRVYS 284
Query: 460 CHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
F G +VS D +++W ++T C+ T H
Sbjct: 285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 94/204 (46%), Gaps = 35/204 (17%)
Query: 304 GGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHK 363
G LK VL+GH + I C+ N + SGS D T+KVWS G K L L GH
Sbjct: 106 GELKSPKVLKGHD---DHVITCLQFCGNR--IVSGSDDNTLKVWSAVTG-KCLRTLVGHT 159
Query: 364 KGTQ--------IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGV 415
G I+S D LK+W+ +T C+ T H + + + E ++++G
Sbjct: 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSG-- 215
Query: 416 WFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGAD 475
S DAT+++W + CL L GH A+V RC G ++VS D
Sbjct: 216 ---------------SRDATLRVWDIETGQCLHVLMGHVAAV-RC-VQYDGRRVVSGAYD 258
Query: 476 GLLKLWSIKTSTCVSTFDKHALKI 499
++K+W +T TC+ T H ++
Sbjct: 259 FMVKVWDPETETCLHTLQGHTNRV 282
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 351 GGLKLLNVLRGHKK---------GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTL 401
G LK VL+GH G +IVS D LK+WS T C+ T H
Sbjct: 106 GELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH------- 158
Query: 402 AITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCH 461
TGGVW D I+IS S D T+K+W C+ +L GH ++V RC
Sbjct: 159 ----------TGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV-RCM 205
Query: 462 FINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
+++ ++VS D L++W I+T C+ H +R
Sbjct: 206 HLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 243
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 43/221 (19%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
++ +GS D TV+VW G ++LN L H + + + N+ ++ + S D+++
Sbjct: 184 RVIITGSSDSTVRVWDVNTG-EMLNTLIHHCEA------VLHLRFNNGMMVTCSKDRSIA 236
Query: 346 VW--STTGGLKLLNVLRGHKKGTQ--------IVSTGADGLLKLWSIKTSTCVSTFDKHA 395
VW ++ + L VL GH+ IVS D +K+W+ T V T + H
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 296
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
I L DR+++S S D TI+LW + CL+ LEGH+
Sbjct: 297 RGIACLQYR-------------------DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 456 SVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 496
V F NK +IVS DG +K+W + V+ D A
Sbjct: 338 LVRCIRFDNK--RIVSGAYDGKIKVWDL-----VAALDPRA 371
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 24/231 (10%)
Query: 273 EAEHGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPND 332
E G + + + SG D T+K+W L+ +L GH + + + ++
Sbjct: 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDK-NTLECKRILTGHTG------SVLCLQYDE 183
Query: 333 KLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFD 392
+++ +GS D TV+VW G ++LN L H + +L L V+
Sbjct: 184 RVIITGSSDSTVRVWDVNTG-EMLNTLIHH----------CEAVLHL-RFNNGMMVTCSK 231
Query: 393 KHALKIWTLAITKD--ENQIITGGVWFVNFSPLD-RILISSSGDATIKLWCLTDYVCLKS 449
++ +W +A D +++ G VN D + ++S+SGD TIK+W + +++
Sbjct: 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 291
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
L GH + + ++ +VS +D ++LW I+ C+ + H +R
Sbjct: 292 LNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 37/176 (21%)
Query: 276 HGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLL 335
H F G + +AS DKT++V+ G KLL + K HE ++ C S +D+ +
Sbjct: 626 HACFSEDG--QRIASCGADKTLQVFKAETGEKLLEI-----KAHEDEVLCCAFSTDDRFI 678
Query: 336 ASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQ-----------IVSTG-ADGLLKLWSIK 383
A+ S+DK VK+W++ G +L++ H + +++TG +D LKLW +
Sbjct: 679 ATCSVDKKVKIWNSMTG-ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 384 TSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
C +T H T V FSP D++L S S D T+KLW
Sbjct: 738 QKECRNTMFGH-----------------TNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 30/213 (14%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
LLA+GS D +K+W R GH +N SP+DKLLAS S D T+K+
Sbjct: 721 LLATGSSDCFLKLWDLNQ-----KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 347 WSTTGG--LKLLNV------LRGHKKGTQIV----STGADGLLKLWSIKTSTCVSTFDKH 394
W T K +NV L ++ +++ S ADG + + K + FD H
Sbjct: 776 WDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK--IFLFDIH 833
Query: 395 ALKIWTLAITKDENQIITG---GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLE 451
+ +I TG + + +FSP + + + + ++LW +
Sbjct: 834 TSGLL--------GEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCR 885
Query: 452 GHDASVLRCHFINKGTQIVSTGADGLLKLWSIK 484
GH + V F G+ +++ D ++LW K
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 30/175 (17%)
Query: 319 HEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHK---------KGTQIV 369
H+K + + + ++K L S S D ++VW+ L LRGH+ K ++++
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWN--WQLDKCIFLRGHQETVKDFRLLKNSRLL 1065
Query: 370 STGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILIS 429
S DG +K+W+I T F H + + I+ D + FS S
Sbjct: 1066 SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATK----------FS-------S 1108
Query: 430 SSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGAD-GLLKLWSI 483
+S D T K+W + L L GH+ V RC + + +++TG D G +++W++
Sbjct: 1109 TSADKTAKIWSFDLLLPLHELRGHNGCV-RCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 44/249 (17%)
Query: 297 VKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLL 356
V++W+T K+ + +GH ++ V SP+ + S D+T+++W T K
Sbjct: 870 VELWNTDSRSKVADC-----RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNS 924
Query: 357 NVLRGHK-----KGTQIVSTGADGLLKLWSIKTST--------------CVSTFDKH--- 394
V+ + + +++ D + +L I T C+S ++
Sbjct: 925 AVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAF 984
Query: 395 -----ALKIWTLAITKDENQIITG------GVWFVNFSPLDRILISSSGDATIKLWCLTD 443
A++I L N+I VW + F+ ++ LISSS DA I++W
Sbjct: 985 GDENGAIEILELV----NNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQL 1040
Query: 444 YVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRNSD 503
C+ L GH +V + K ++++S DG +K+W+I T F H + + D
Sbjct: 1041 DKCI-FLRGHQETVKDFRLL-KNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCD 1098
Query: 504 SENDHKGFG 512
+D F
Sbjct: 1099 ISHDATKFS 1107
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 45/171 (26%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINC-------VTVSPNDKLLASGSL 340
L S S D TVKVW N++ G+K EKD C +S + +S S
Sbjct: 1064 LLSWSFDGTVKVW---------NIITGNK---EKDFVCHQGTVLSCDISHDATKFSSTSA 1111
Query: 341 DKTVKVWSTTGGLKLLNVLRGHKKGTQ---------IVSTGAD-GLLKLWSIKTSTCVST 390
DKT K+WS L L+ LRGH + +++TG D G +++W++
Sbjct: 1112 DKTAKIWSFDLLLP-LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNG----- 1165
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVN--FSPLDRILISSSGDATIKLW 439
++ L E T G W + FSP ++LIS+ G IK W
Sbjct: 1166 ------ELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG--YIKWW 1208
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Query: 365 GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLD 424
G +I S GAD L+++ +T + L I E++++ FS D
Sbjct: 633 GQRIASCGADKTLQVFKAETGEKL------------LEIKAHEDEVLCCA-----FSTDD 675
Query: 425 RILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV-STGA-DGLLKLWS 482
R + + S D +K+W + + + H V CHF N ++ +TG+ D LKLW
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 483 IKTSTCVSTFDKHALKIRNSDSENDHK 509
+ C +T H + + D K
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDK 762
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 26/172 (15%)
Query: 320 EKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKL 379
E ++C +SP+ + +A G + +++ ++ HKK + AD
Sbjct: 967 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNN-RIFQSRFQHKKTVWHIQFTAD----- 1020
Query: 380 WSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFV-NFSPL-DRILISSSGDATIK 437
T +S+ D +++W + D+ + G V +F L + L+S S D T+K
Sbjct: 1021 ----EKTLISSSDDAEIQVWNWQL--DKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVK 1074
Query: 438 LWCLT------DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSI 483
+W + D+VC H +VL C + T+ ST AD K+WS
Sbjct: 1075 VWNIITGNKEKDFVC------HQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
+S S DKT K+WS L L + +GH + C S + LLA+G + +++W
Sbjct: 1106 FSSTSADKTAKIWSFDLLLPLHEL-----RGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Query: 348 STTGGLKLLNV------------------LRGHKKGTQIVSTGADGLLKLWSIKTSTCVS 389
+ + G +LL++ L G ++S G G +K W++ T
Sbjct: 1161 NVSNG-ELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQ 1217
Query: 390 TFDKHALKIWTLAITKDENQIIT 412
TF + + + ++ D +T
Sbjct: 1218 TFYTNGTNLKKIHVSPDFKTYVT 1240
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 412 TGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVS 471
T V+ FS + + S D T++++ L ++ H+ VL C F I +
Sbjct: 621 TDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIAT 680
Query: 472 TGADGLLKLWSIKTSTCVSTFDKHALKI 499
D +K+W+ T V T+D+H+ ++
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHSEQV 708
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 20/164 (12%)
Query: 286 ELLASGSLDKTVKVWSTTGG--LKLLNV------LRGHKKGHEKDINCVTVSPNDKLLAS 337
+LLAS S D T+K+W T K +NV L ++ E + C + S + +
Sbjct: 762 KLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMV 821
Query: 338 GSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALK 397
+ +K T GL L + GH Q +S + V ++ ++
Sbjct: 822 AAKNKIFLFDIHTSGL-LGEIHTGHHSTIQYCD---------FSPQNHLAVVALSQYCVE 871
Query: 398 IWTLAITKDENQIITGGVWF--VNFSPLDRILISSSGDATIKLW 439
+W W V FSP ++SS D TI+LW
Sbjct: 872 LWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 284 TVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDK-LLASGSLDK 342
T + SGS D TVK+W+ L +GHE + CV +P D ASG LD+
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTF----EGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 343 TVKVWSTTGGLKLLNVLRGHKKGTQIVS-----------TGADGL-LKLWSIKTSTCVST 390
TVKVWS + G ++G V T +D L +K+W +T +CV+T
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSL 450
+ H V F F P I+IS S D T+K+W + Y K+L
Sbjct: 224 LEGHM-----------------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 18/200 (9%)
Query: 291 GSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTT 350
GS D ++V++ G K+++ + H I + V P + SGS D TVK+W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
L GH+ V+ ST S +K+W+L + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPK--------DPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 411 ITG---GVWFVNFSPLD--RILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINK 465
TG GV +V++ PL +I++S D TIK+W C+ +LEGH ++V F
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 466 GTQIVSTGADGLLKLWSIKT 485
I+S DG LK+W+ T
Sbjct: 240 LPIIISGSEDGTLKIWNSST 259
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVS--PNDKLLASGSLDKTVK 345
ASG LD+TVKVWS + G ++G +N V P+ + + S D T+K
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPLPDKPYMITASDDLTIK 211
Query: 346 VW---------STTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHAL 396
+W + G + ++ H I+S DG LK+W+ T T +
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
Query: 397 KIWTLAI--TKDENQIITG 413
+ W +A T +N I +G
Sbjct: 272 RSWCIATHPTGRKNYIASG 290
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 284 TVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDK-LLASGSLDK 342
T + SGS D TVK+W+ L +GHE + CV +P D ASG LD+
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTF----EGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 343 TVKVWSTTGGLKLLNVLRGHKKGTQIVS-----------TGADGL-LKLWSIKTSTCVST 390
TVKVWS + G ++G V T +D L +K+W +T +CV+T
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSL 450
+ H V F F P I+IS S D T+K+W + Y K+L
Sbjct: 224 LEGHM-----------------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 18/200 (9%)
Query: 291 GSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTT 350
GS D ++V++ G K+++ + H I + V P + SGS D TVK+W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
L GH+ V+ ST S +K+W+L + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPK--------DPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 411 ITG---GVWFVNFSPLD--RILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINK 465
TG GV +V++ PL +I++S D TIK+W C+ +LEGH ++V F
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 466 GTQIVSTGADGLLKLWSIKT 485
I+S DG LK+W+ T
Sbjct: 240 LPIIISGSEDGTLKIWNSST 259
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVS--PNDKLLASGSLDKTVK 345
ASG LD+TVKVWS + G ++G +N V P+ + + S D T+K
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPLPDKPYMITASDDLTIK 211
Query: 346 VW---------STTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHAL 396
+W + G + ++ H I+S DG LK+W+ T T +
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
Query: 397 KIWTLAI--TKDENQIITG 413
+ W +A T +N I +G
Sbjct: 272 RSWCIATHPTGRKNYIASG 290
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 76/174 (43%), Gaps = 34/174 (19%)
Query: 290 SGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDK-LLASGSLDKTVKVWS 348
SGS D TVK+W+ L +GHE + CV +P D ASG LD+TVKVWS
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTF----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Query: 349 TTGGLKLLNVLRGHKKGTQIVS-----------TGADGL-LKLWSIKTSTCVSTFDKHAL 396
+ G ++G V T +D L +K+W +T +CV+T + H
Sbjct: 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-- 227
Query: 397 KIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSL 450
V F F P I+IS S D T+K+W + Y K+L
Sbjct: 228 ---------------MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 18/208 (8%)
Query: 291 GSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTT 350
GS D ++V++ G K+++ + H I + V P + SGS D TVK+W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
L GH+ V+ ST S +K+W+L + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPK--------DPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 411 ITG---GVWFVNFSPLDR--ILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINK 465
TG GV +V++ PL +I++S D TIK+W C+ +LEGH ++V F
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 466 GTQIVSTGADGLLKLWSIKTSTCVSTFD 493
I+S DG LK+W+ T T +
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVS--PNDKLLASGSLDKTVK 345
ASG LD+TVKVWS + G ++G +N V P+ + + S D T+K
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPLPDKPYMITASDDLTIK 211
Query: 346 VW---------STTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHAL 396
+W + G + ++ H I+S DG LK+W+ T T +
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
Query: 397 KIWTLAI--TKDENQIITG 413
+ W +A T +N I +G
Sbjct: 272 RSWCIATHPTGRKNYIASG 290
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 284 TVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDK-LLASGSLDK 342
T + SGS D TVK+W+ L +GHE + CV +P D ASG LD+
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTF----EGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 343 TVKVWSTTGGLKLLNVLRGHKKGTQIVS-----------TGADGL-LKLWSIKTSTCVST 390
TVKVWS + G ++G V T +D L +K+W +T +CV+T
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSL 450
+ H V F F P I+IS S D T+K+W + Y K+L
Sbjct: 224 LEGHM-----------------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 18/200 (9%)
Query: 291 GSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTT 350
GS D ++V++ G K+++ + H I + V P + SGS D TVK+W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQI 410
L GH+ V+ ST S +K+W+L + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPK--------DPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 411 ITG---GVWFVNFSPLD--RILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINK 465
TG GV +V++ PL +I++S D TIK+W C+ +LEGH ++V F
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 466 GTQIVSTGADGLLKLWSIKT 485
I+S DG LK+W+ T
Sbjct: 240 LPIIISGSEDGTLKIWNSST 259
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVS--PNDKLLASGSLDKTVK 345
ASG LD+TVKVWS + G ++G +N V P+ + + S D T+K
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPLPDKPYMITASDDLTIK 211
Query: 346 VW---------STTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHAL 396
+W + G + ++ H I+S DG LK+W+ T T +
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
Query: 397 KIWTLAI--TKDENQIITG 413
+ W +A T +N I +G
Sbjct: 272 RSWCIATHPTGRKNYIASG 290
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 55/212 (25%)
Query: 276 HGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLL 335
H F G + +AS DKT++V+ G KLL++ K HE ++ C S +D +
Sbjct: 627 HACFSQDG--QRIASCGADKTLQVFKAETGEKLLDI-----KAHEDEVLCCAFSSDDSYI 679
Query: 336 ASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
A+ S DK VK+ W T V T+D+H+
Sbjct: 680 ATCSADKKVKI---------------------------------WDSATGKLVHTYDEHS 706
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
++ T N ++ L + S D +KLW L C ++ GH
Sbjct: 707 EQVNCCHFTNKSNHLL---------------LATGSNDFFLKLWDLNQKECRNTMFGHTN 751
Query: 456 SVLRCHFINKGTQIVSTGADGLLKLWSIKTST 487
SV C F + S ADG L+LW ++++
Sbjct: 752 SVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 270 FVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVS 329
++PEA+ +E +A G D +K+ N + GH+K + + +
Sbjct: 965 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-----NRVFSSGVGHKKAVRHIQFT 1019
Query: 330 PNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHK---------KGTQIVSTGADGLLKLW 380
+ K L S S D ++VW+ G + L+ H+ + ++++S DG +K+W
Sbjct: 1020 ADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1077
Query: 381 SIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWC 440
++ T F H + + AI+ D + FS S+S D T K+W
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATK----------FS-------STSADKTAKIWS 1120
Query: 441 LTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGAD-GLLKLWSI 483
L L+GH+ V RC + +++TG D G +++W++
Sbjct: 1121 FDLLSPLHELKGHNGCV-RCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 30/213 (14%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
LLA+GS D +K+W R GH +N SP+D+LLAS S D T+++
Sbjct: 722 LLATGSNDFFLKLWDLNQ-----KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 347 WSTTGG--LKLLNVLR------GHKKGTQIV----STGADGLLKLWSIKTSTCVSTFDKH 394
W K +NV R + +++ S ADG + + K V FD H
Sbjct: 777 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK--VLLFDIH 834
Query: 395 ALKIWTLAITKDENQIITG---GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLE 451
+ +I TG + + +FSP D + + + ++LW + + +
Sbjct: 835 TSGLLA--------EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR 886
Query: 452 GHDASVLRCHFINKGTQIVSTGADGLLKLWSIK 484
GH + V F G+ ++ D +++W K
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 363 KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSP 422
+ G +I S GAD L+++ +T + H ++ A + D++ I T
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT---------- 681
Query: 423 LDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV-STGA-DGLLKL 480
S D +K+W + + + H V CHF NK ++ +TG+ D LKL
Sbjct: 682 -------CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 481 WSIKTSTCVSTFDKH 495
W + C +T H
Sbjct: 735 WDLNQKECRNTMFGH 749
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 48/234 (20%)
Query: 297 VKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLL 356
V++W+ LK+ + +GH ++ V SP+ + S D+T++VW T K
Sbjct: 871 VELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 925
Query: 357 NVLRGHK------------------KGTQIVSTGADGLLKLWSIKTSTC--------VST 390
++ + +G Q+++ + L + S C V+
Sbjct: 926 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 985
Query: 391 FDKH-ALKIWTLAITKDENQIITGGV------WFVNFSPLDRILISSSGDATIKLWCLT- 442
D+ A+KI L N++ + GV + F+ + LISSS D+ I++W
Sbjct: 986 GDEDGAIKIIELP----NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Query: 443 -DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
DYV L+ H +V + + ++++S DG +K+W++ T F H
Sbjct: 1042 GDYV---FLQAHQETVKDFRLL-QDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1091
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 412 TGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVS 471
T V+ FS + + S D T++++ L ++ H+ VL C F + + I +
Sbjct: 622 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 681
Query: 472 TGADGLLKLWSIKTSTCVSTFDKHALKI 499
AD +K+W T V T+D+H+ ++
Sbjct: 682 CSADKKVKIWDSATGKLVHTYDEHSEQV 709
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 25/143 (17%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
+S S DKT K+WS LL+ L KGH + C S + LLA+G + +++W
Sbjct: 1107 FSSTSADKTAKIWS----FDLLSPLH-ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 348 STTGGLKL-----LNVLRG-------------HKKGTQIVSTGADGLLKLWSIKTSTCVS 389
+ + G L ++V G +VS G G LK W++ T
Sbjct: 1162 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQ 1219
Query: 390 TFDKHALKIWTLAITKDENQIIT 412
TF + + + ++ D +T
Sbjct: 1220 TFYTNGTNLKKIHVSPDFRTYVT 1242
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 31/198 (15%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGH----------KKGTQ 367
GH I SP D L V++W+ LK+ + RGH G+
Sbjct: 845 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-RGHLSWVHGVMFSPDGSS 903
Query: 368 IVSTGADGLLKLWS----IKTSTCV--STFDKHALKIWTLAITKDEN---QIITGGVWFV 418
++ D +++W K S V D + T+ + D Q+I G +
Sbjct: 904 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 963
Query: 419 NFSPLDRI-----------LISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGT 467
++ P ++ + D IK+ L + S GH +V F G
Sbjct: 964 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1023
Query: 468 QIVSTGADGLLKLWSIKT 485
++S+ D ++++W+ +T
Sbjct: 1024 TLISSSEDSVIQVWNWQT 1041
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 278 AFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLAS 337
A+ GT LLAS D+ +++W T G + + +GH++ + V SP LAS
Sbjct: 23 AWNPAGT--LLASCGGDRRIRIWGTEGDSWICKSVL--SEGHQRTVRKVAWSPCGNYLAS 78
Query: 338 GSLDKTVKVWS-TTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHAL 396
S D T +W + + L GH+ + V+ G L +TC + DK
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL------LATC--SRDK--- 127
Query: 397 KIWTLAITK-DENQII------TGGVWFVNFSPLDRILISSSGDATIKLWCL--TDYVCL 447
+W + + DE + + T V V + P +L S+S D T+KL+ D+VC
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC 187
Query: 448 KSLEGHDASVLRCHFINKGTQIVSTGADGLLKLW 481
+LEGH+++V F G ++ S D +++W
Sbjct: 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 19/148 (12%)
Query: 359 LRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFV 418
L + GT + S G D +++W + + W E T V V
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDS------------WICKSVLSEGHQRT--VRKV 67
Query: 419 NFSPLDRILISSSGDATIKLW--CLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADG 476
+SP L S+S DAT +W D+ C+ +LEGH+ V + G + + D
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 477 LLKLWSIKTST---CVSTFDKHALKIRN 501
+ +W + CVS + H +++
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKH 155
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 415 VWFVNFSPLDRILISSSGDATIKLWCL--TDYVCLKSL-EGHDASVLRCHFINKGTQIVS 471
WF+ ++P +L S GD I++W ++C L EGH +V + + G + S
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 472 TGADGLLKLWSIKTST--CVSTFDKHALKIRN 501
D +W CV+T + H ++++
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKS 110
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 55/212 (25%)
Query: 276 HGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLL 335
H F G + +AS DKT++V+ G KLL++ K HE ++ C S +D +
Sbjct: 620 HACFSQDG--QRIASCGADKTLQVFKAETGEKLLDI-----KAHEDEVLCCAFSSDDSYI 672
Query: 336 ASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
A+ S DK VK+ W T V T+D+H+
Sbjct: 673 ATCSADKKVKI---------------------------------WDSATGKLVHTYDEHS 699
Query: 396 LKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDA 455
++ T N ++ L + S D +KLW L C ++ GH
Sbjct: 700 EQVNCCHFTNKSNHLL---------------LATGSNDFFLKLWDLNQKECRNTMFGHTN 744
Query: 456 SVLRCHFINKGTQIVSTGADGLLKLWSIKTST 487
SV C F + S ADG L+LW ++++
Sbjct: 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 270 FVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVS 329
++PEA+ +E +A G D +K+ N + GH+K + + +
Sbjct: 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-----NRVFSSGVGHKKAVRHIQFT 1012
Query: 330 PNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHK---------KGTQIVSTGADGLLKLW 380
+ K L S S D ++VW+ G + L+ H+ + ++++S DG +K+W
Sbjct: 1013 ADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1070
Query: 381 SIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWC 440
++ T F H + + AI+ D + FS S+S D T K+W
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATK----------FS-------STSADKTAKIWS 1113
Query: 441 LTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGAD-GLLKLWSI 483
L L+GH+ V RC + +++TG D G +++W++
Sbjct: 1114 FDLLSPLHELKGHNGCV-RCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 30/213 (14%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
LLA+GS D +K+W R GH +N SP+D+LLAS S D T+++
Sbjct: 715 LLATGSNDFFLKLWDLNQ-----KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 347 WSTTGG--LKLLNVLR------GHKKGTQIV----STGADGLLKLWSIKTSTCVSTFDKH 394
W K +NV R + +++ S ADG + + K V FD H
Sbjct: 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK--VLLFDIH 827
Query: 395 ALKIWTLAITKDENQIITG---GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLE 451
+ +I TG + + +FSP D + + + ++LW + + +
Sbjct: 828 TSGLLA--------EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR 879
Query: 452 GHDASVLRCHFINKGTQIVSTGADGLLKLWSIK 484
GH + V F G+ ++ D +++W K
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 363 KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSP 422
+ G +I S GAD L+++ +T + H ++ A + D++ I T
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT---------- 674
Query: 423 LDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIV-STGA-DGLLKL 480
S D +K+W + + + H V CHF NK ++ +TG+ D LKL
Sbjct: 675 -------CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 481 WSIKTSTCVSTFDKH 495
W + C +T H
Sbjct: 728 WDLNQKECRNTMFGH 742
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 48/234 (20%)
Query: 297 VKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLL 356
V++W+ LK+ + +GH ++ V SP+ + S D+T++VW T K
Sbjct: 864 VELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 918
Query: 357 NVLRGHK------------------KGTQIVSTGADGLLKLWSIKTSTC--------VST 390
++ + +G Q+++ + L + S C V+
Sbjct: 919 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978
Query: 391 FDKH-ALKIWTLAITKDENQIITGGV------WFVNFSPLDRILISSSGDATIKLWCLT- 442
D+ A+KI L N++ + GV + F+ + LISSS D+ I++W
Sbjct: 979 GDEDGAIKIIELP----NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Query: 443 -DYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
DYV L+ H +V + + ++++S DG +K+W++ T F H
Sbjct: 1035 GDYV---FLQAHQETVKDFRLL-QDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1084
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 412 TGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVS 471
T V+ FS + + S D T++++ L ++ H+ VL C F + + I +
Sbjct: 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 674
Query: 472 TGADGLLKLWSIKTSTCVSTFDKHALKI 499
AD +K+W T V T+D+H+ ++
Sbjct: 675 CSADKKVKIWDSATGKLVHTYDEHSEQV 702
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 25/143 (17%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
+S S DKT K+WS LL+ L KGH + C S + LLA+G + +++W
Sbjct: 1100 FSSTSADKTAKIWS----FDLLSPLH-ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 348 STTGGLKL-----LNVLRG-------------HKKGTQIVSTGADGLLKLWSIKTSTCVS 389
+ + G L ++V G +VS G G LK W++ T
Sbjct: 1155 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQ 1212
Query: 390 TFDKHALKIWTLAITKDENQIIT 412
TF + + + ++ D +T
Sbjct: 1213 TFYTNGTNLKKIHVSPDFRTYVT 1235
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 33/199 (16%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGH----------KKGTQ 367
GH I SP D L V++W+ LK+ + RGH G+
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-RGHLSWVHGVMFSPDGSS 896
Query: 368 IVSTGADGLLKLWSIKTSTCVST-------FDKHALKIWTLAITKDEN---QIITGGVWF 417
++ D +++W K C ++ D + T+ + D Q+I G
Sbjct: 897 FLTASDDQTIRVWETK-KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955
Query: 418 VNFSPLDRI-----------LISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKG 466
+++ P ++ + D IK+ L + S GH +V F G
Sbjct: 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1015
Query: 467 TQIVSTGADGLLKLWSIKT 485
++S+ D ++++W+ +T
Sbjct: 1016 KTLISSSEDSVIQVWNWQT 1034
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 287 LLASGSLDKTVKVWSTT-GGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
+LA+GS D+ +K+ S L++VL + H+K I V P+ LLA+GS D TV
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVL--DETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83
Query: 346 VWST------TGGLKLLNVLRGHKKGTQIVSTGADG-LLKLWSIKTSTCVSTFDKHALKI 398
+W+ T + LL ++ GH+ + V+ DG L S S + D+ +
Sbjct: 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143
Query: 399 WTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW--CLTDYVCLKSLEGHDAS 456
+++ ++ +Q + +W P + +L SSS D T+++W D+ C+ L GH+ +
Sbjct: 144 ECISVLQEHSQDVKHVIWH----PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT 199
Query: 457 VLRCHF 462
V F
Sbjct: 200 VWSSDF 205
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 34/118 (28%)
Query: 287 LLASGSLDKTVKVWST-TGGLKLLNVLRGHKKGHEKDINCVTVSPNDKL-----LASGSL 340
LLAS S D TV++W + + VL GH+ V S DK L SGS
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHE-------GTVWSSDFDKTEGVFRLCSGSD 219
Query: 341 DKTVKVWSTTGG-------------------LKLLNVLRGHKKGTQIVSTGADGLLKL 379
D TV+VW G ++ NV G I S GADG+L +
Sbjct: 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAV 275
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 418 VNFSPLDRILISSSGDATIKLWCLTDYV-------CLKSLEGHDASVLRCHFINKGTQIV 470
V + P +L + S D+T+ +W + L +EGH+ V + N G +
Sbjct: 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 471 STGADGLLKLWSIKTS----TCVSTFDKHALKIRN 501
+ D + +W S C+S +H+ +++
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 25/223 (11%)
Query: 281 TGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSL 340
+ G LL S S DKT+ W TG + V KGH + T++ + S S
Sbjct: 26 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 341 DKTVKVWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVST 390
DKT+++W G + GH KK + I+S D +K+W+IK C++T
Sbjct: 86 DKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSG-DATIKLWCLTDYVCLKS 449
H + + + +E + D + I S+G D +K W L +
Sbjct: 144 LLGHNDWVSQVRVVPNEK------------ADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
GH++++ GT I S G DG + LW++ + T
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 311 VLRGHKKGHEKDINCVTVS---PNDKLLASGSLDKTVKVWSTTGGLKLLNV----LRGHK 363
VLRG +GH + + S PN LL S S DKT+ W TG + V +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 364 KGTQIVSTGADGL----------LKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITG 413
Q + ADG L+LW + T F H + ++ I K + II+G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 414 GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFI------NKGT 467
S D TIK+W + CL +L GH+ V + + +
Sbjct: 126 -----------------SRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 468 QIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
I+S G D ++K W++ + F H I
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 425 RILISSSGDATIKLWCLTDY-----VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
+L+S+S D T+ W LT V ++S +GH V C G +S D L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 480 LWSIKTSTCVSTFDKHALKIRNSD 503
LW + T F H + + D
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVD 114
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 25/223 (11%)
Query: 281 TGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSL 340
+ G LL S S DKT+ W TG + V KGH + T++ + S S
Sbjct: 26 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 341 DKTVKVWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVST 390
DKT+++W G + GH KK + I+S D +K+W+IK C++T
Sbjct: 86 DKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSG-DATIKLWCLTDYVCLKS 449
H + + + +E + D + I S+G D +K W L +
Sbjct: 144 LLGHNDWVSQVRVVPNEK------------ADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
GH++++ GT I S G DG + LW++ + T
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 311 VLRGHKKGHEKDINCVTVS---PNDKLLASGSLDKTVKVWSTTGGLKLLNV----LRGHK 363
VLRG +GH + + S PN LL S S DKT+ W TG + V +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 364 KGTQIVSTGADGL----------LKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITG 413
Q + ADG L+LW + T F H + ++ I K + II+G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 414 GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFI------NKGT 467
S D TIK+W + CL +L GH+ V + + +
Sbjct: 126 -----------------SRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 468 QIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
I+S G D ++K W++ + F H I
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 425 RILISSSGDATIKLWCLTDY-----VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
+L+S+S D T+ W LT V ++S +GH V C G +S D L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 480 LWSIKTSTCVSTFDKHALKIRNSD 503
LW + T F H + + D
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVD 114
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 25/223 (11%)
Query: 281 TGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSL 340
+ G LL S S DKT+ W TG + V KGH + T++ + S S
Sbjct: 26 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 341 DKTVKVWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVST 390
DKT+++W G + GH KK + I+S D +K+W+IK C++T
Sbjct: 86 DKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSG-DATIKLWCLTDYVCLKS 449
H + + + +E + D + I S+G D +K W L +
Sbjct: 144 LLGHNDWVSQVRVVPNEK------------ADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
GH++++ GT I S G DG + LW++ + T
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 311 VLRGHKKGHEKDINCVTVS---PNDKLLASGSLDKTVKVWSTTGGLKLLNV----LRGHK 363
VLRG +GH + + S PN LL S S DKT+ W TG + V +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 364 KGTQIVSTGADGL----------LKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITG 413
Q + ADG L+LW + T F H + ++ I K + II+G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 414 GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFI------NKGT 467
S D TIK+W + CL +L GH+ V + + +
Sbjct: 126 -----------------SRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 468 QIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
I+S G D ++K W++ + F H I
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 425 RILISSSGDATIKLWCLTDY-----VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
+L+S+S D T+ W LT V ++S +GH V C G +S D L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 480 LWSIKTSTCVSTFDKHALKIRNSD 503
LW + T F H + + D
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVD 114
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 25/223 (11%)
Query: 281 TGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSL 340
+ G LL S S DKT+ W TG + V KGH + T++ + S S
Sbjct: 20 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 79
Query: 341 DKTVKVWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVST 390
DKT+++W G + GH KK + I+S D +K+W+IK C++T
Sbjct: 80 DKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 137
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSG-DATIKLWCLTDYVCLKS 449
H + + + +E + D + I S+G D +K W L +
Sbjct: 138 LLGHNDWVSQVRVVPNEK------------ADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
GH++++ GT I S G DG + LW++ + T
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 228
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 311 VLRGHKKGHEKDINCVTVS---PNDKLLASGSLDKTVKVWSTTGGLKLLNV----LRGHK 363
VLRG +GH + + S PN LL S S DKT+ W TG + V +GH
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 59
Query: 364 KGTQIVSTGADGL----------LKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITG 413
Q + ADG L+LW + T F H + ++ I K + II+G
Sbjct: 60 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 414 GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFI------NKGT 467
S D TIK+W + CL +L GH+ V + + +
Sbjct: 120 -----------------SRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSV 161
Query: 468 QIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
I+S G D ++K W++ + F H I
Sbjct: 162 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 194
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 425 RILISSSGDATIKLWCLTDY-----VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
+L+S+S D T+ W LT V ++S +GH V C G +S D L+
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 84
Query: 480 LWSIKTSTCVSTFDKHALKIRNSD 503
LW + T F H + + D
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVD 108
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 25/223 (11%)
Query: 281 TGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSL 340
+ G LL S S DKT+ W TG + V KGH + T++ + S S
Sbjct: 26 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 341 DKTVKVWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVST 390
DKT+++W G + GH KK + I+S D +K+W+IK C++T
Sbjct: 86 DKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSG-DATIKLWCLTDYVCLKS 449
H + + + +E + D + I S+G D +K W L +
Sbjct: 144 LLGHNDWVSQVRVVPNEK------------ADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
GH++++ GT I S G DG + LW++ + T
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 311 VLRGHKKGHEKDINCVTVS---PNDKLLASGSLDKTVKVWSTTGGLKLLNV----LRGHK 363
VLRG +GH + + S PN LL S S DKT+ W TG + V +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 364 KGTQIVSTGADGL----------LKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITG 413
Q + ADG L+LW + T F H + ++ I K + II+G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 414 GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFI------NKGT 467
S D TIK+W + CL +L GH+ V + + +
Sbjct: 126 -----------------SRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 468 QIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
I+S G D ++K W++ + F H I
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 425 RILISSSGDATIKLWCLTDY-----VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
+L+S+S D T+ W LT V ++S +GH V C G +S D L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 480 LWSIKTSTCVSTFDKHALKIRNSD 503
LW + T F H + + D
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVD 114
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 31/225 (13%)
Query: 284 TVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKT 343
T+ + AS SLD +++W G ++ ++ G D + SP+ + LA+G+
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAG-----PVDAWTLAFSPDSQYLATGTHVGK 145
Query: 344 VKVWSTTGGLKLLNV-LRGH--------KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 394
V ++ G K ++ RG G + S DG++ ++ I T + T + H
Sbjct: 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 395 ALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHD 454
A+ I +L FSP ++L+++S D IK++ + +L GH
Sbjct: 206 AMPIRSLT-----------------FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 455 ASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKI 499
+ VL F T VS+ +D +K+W + T TCV TF H ++
Sbjct: 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV 293
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 90/237 (37%), Gaps = 40/237 (16%)
Query: 305 GLKLLNVLRGHKKGHEKDINCVTVSPNDK----LLASGSLDKTVKVWSTTGG-LKLLNVL 359
G +L ++ H+ I V N K + +GSLD VKVW L L L
Sbjct: 17 GTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL 76
Query: 360 RGHKKGTQIV----------STGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQ 409
GH+ G V S+ D ++LW ++ + + D + WTLA + D
Sbjct: 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 410 IITGG-------------------------VWFVNFSPLDRILISSSGDATIKLWCLTDY 444
+ TG + + +SP + L S + D I ++ +
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 196
Query: 445 VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRN 501
L +LEGH + F +V+ DG +K++ ++ + T HA + N
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN 253
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
LASG++D + ++ G KLL+ L +GH I +T SP+ +LL + S D +K++
Sbjct: 179 LASGAIDGIINIFDIATG-KLLHTL----EGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Query: 348 STTGGLKLLNVLRGHKKGTQIVSTGADG----------LLKLWSIKTSTCVSTFDKHALK 397
L L GH V+ D +K+W + T TCV TF H +
Sbjct: 234 DVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 292
Query: 398 IWTLAITKDENQIITGG 414
+W + + ++I++ G
Sbjct: 293 VWGVKYNGNGSKIVSVG 309
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 281 TGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSL 340
+ G LL S S DKT+ W TG + V KGH + T++ + S S
Sbjct: 26 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 341 DKTVKVWSTTGGLKLLNVLRGH----------KKGTQIVSTGADGLLKLWSIKTSTCVST 390
DKT+++W G + GH KK + I+S D +K+W+IK C++T
Sbjct: 86 DKTLRLWDVATG-ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLAT 143
Query: 391 FDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSG-DATIKLWCLTDYVCLKS 449
H + + + +E + D + I S+G D +K W L +
Sbjct: 144 LLGHNDWVSQVRVVPNEK------------ADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF 492
GH++++ GT I S G DG + LW++ T
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL 234
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 311 VLRGHKKGHEKDINCVTVS---PNDKLLASGSLDKTVKVWSTTGGLKLLNV----LRGHK 363
VLRG +GH + + S PN LL S S DKT+ W TG + V +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 364 KGTQIVSTGADGL----------LKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITG 413
Q + ADG L+LW + T F H + ++ I K + II+G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 414 GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFI------NKGT 467
S D TIK+W + CL +L GH+ V + + +
Sbjct: 126 -----------------SRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 468 QIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
I+S G D +K W++ + F H I
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADFIGHNSNIN 200
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 425 RILISSSGDATIKLWCLTDY-----VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
+L+S+S D T+ W LT V ++S +GH V C G +S D L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 480 LWSIKTSTCVSTFDKHALKIRNSD 503
LW + T F H + + D
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSVD 114
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 285 VELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTV 344
+++ S S DK++ +W T K V + GH + V +S + + SGS D +
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 345 KVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAIT 404
++W G+ + GH K D L +S+ VS +K+W +
Sbjct: 455 RLWDLAAGVSTRRFV-GHTK---------DVLSVAFSLDNRQIVSASRDRTIKLWN-TLG 503
Query: 405 KDENQIITGG------VWFVNFSP--LDRILISSSGDATIKLWCLTDYVCLKSLEGHDAS 456
+ + I GG V V FSP L ++S+S D T+K+W L++ +L GH
Sbjct: 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 563
Query: 457 VLRCHFINKGTQIVSTGADGLLKLWSI 483
V G+ S G DG++ LW +
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 290 SGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWST 349
SGS D +++W G+ + GH KD+ V S +++ + S S D+T+K+W+T
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFV-----GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
Query: 350 TGGLK--LLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDE 407
G K + GH+ V + +++ + +++DK +K+W L+ K
Sbjct: 502 LGECKYTISEGGEGHRDWVSCVRFSPN------TLQPTIVSASWDK-TVKVWNLSNCKLR 554
Query: 408 NQII--TGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINK 465
+ + TG V V SP + S D + LW L + L SLE + SV+ +
Sbjct: 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSP 612
Query: 466 GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRNSDSEN 506
+ + +K+W +++ + V K LK ++N
Sbjct: 613 NRYWLCAATEHGIKIWDLESKSIVEDL-KVDLKAEAEKADN 652
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
+ S S DKTVKVW+ + KL + L GH G+ ++ V VSP+ L ASG D V +W
Sbjct: 534 IVSASWDKTVKVWNLSN-CKLRSTLAGHT-GY---VSTVAVSPDGSLCASGGKDGVVLLW 588
Query: 348 STTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTL 401
G KL ++ + ++ + W C +T +H +KIW L
Sbjct: 589 DLAEGKKLYSL-----EANSVIHALCFSPNRYW-----LCAAT--EHGIKIWDL 630
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 421 SPLDR--ILISSSGDATIKLWCLTD-----YVCLKSLEGHDASVLRCHFINKGTQIVSTG 473
+P+D I++S+S D +I LW LT V + L GH V + G +S
Sbjct: 390 TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS 449
Query: 474 ADGLLKLWSIKTSTCVSTFDKH 495
DG L+LW + F H
Sbjct: 450 WDGELRLWDLAAGVSTRRFVGH 471
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 64/246 (26%)
Query: 268 GIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVT 327
G++ + HG +L SGS D+TV+VW G +V +GH + C+
Sbjct: 164 GVWALKYAHGG--------ILVSGSTDRTVRVWDIKKGC-CTHVF----EGHNSTVRCLD 210
Query: 328 V--SPNDKLLASGSLDKTVKVW----------------------STTGGLKLLNVLRGHK 363
+ N K + +GS D T+ VW + + VLRGH
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270
Query: 364 K--------GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGV 415
G +VS D L +W + C+ H +I++ + + I
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI---- 326
Query: 416 WFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGAD 475
S+S D TI++W L + + +L+GH A V +K +VS AD
Sbjct: 327 -------------SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF--LVSAAAD 371
Query: 476 GLLKLW 481
G ++ W
Sbjct: 372 GSIRGW 377
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 27/226 (11%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
+ +G+ DK ++V+ + LL + GH+ + + + + +L SGS D+TV+VW
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQL-----SGHDGGVWALKYA-HGGILVSGSTDRTVRVW 188
Query: 348 STTGGLKLLNVLRGHK-----------KGTQIVSTGA-DGLLKLWSI-KTSTCVSTFDKH 394
G +V GH K + + TG+ D L +W + K S+ ++H
Sbjct: 189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 395 ALKIWTLAITKDENQIITGGVW-----FVNFSPLDRILISSSGDATIKLWCLTDYVCLKS 449
+ + T +EN G + S I++S S D T+ +W + CL
Sbjct: 248 DYPL--VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
L GH + + ++ + +S D +++W ++ + T H
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 243 FPRQSMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTV----ELLASGSLDKTVK 298
P++S P EE + +H P + G + TV ++ SGS D T+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 299 VWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNV 358
VW +K L +L GH I K S S+D T+++W G +L+
Sbjct: 294 VWD-VAQMKCLYIL----SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYT 347
Query: 359 LRGHK--------KGTQIVSTGADGLLKLW 380
L+GH +VS ADG ++ W
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 55/245 (22%)
Query: 297 VKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLL 356
+K W + LRGH I C+ D + +G+ DK ++V+ + K L
Sbjct: 102 LKNWYNPKFVPQRTTLRGHMTS---VITCLQFE--DNYVITGADDKMIRVYDSINK-KFL 155
Query: 357 NVLRGHKKGTQ---------IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDE 407
L GH G +VS D +++W IK C F+ H + L I + +
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 408 NQIITGGVWFVNFSPLDRILISSSGDATIKLWCLT------------DY----------- 444
N + +++ S D T+ +W L DY
Sbjct: 216 NI---------------KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 445 VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRNSDS 504
+ L GH ASV G +VS D L +W + C+ H +I ++
Sbjct: 261 YFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318
Query: 505 ENDHK 509
+++ K
Sbjct: 319 DHERK 323
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 420 FSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
F P LISSS D +K+W + D ++L GH A+V I++G ++S DG ++
Sbjct: 144 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 203
Query: 480 LWSIKTSTCVSTFDKHALKIRNSDSENDHKG-------FGLPRQL 517
LW T T + TF++ EN H G G RQL
Sbjct: 204 LWECGTGTTIHTFNR---------KENPHDGVNSIALFVGTDRQL 239
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 301 STTGGLKLL----NVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLL 356
+T G +K+L N+ R + H +I + P+ + L S S D +K+WS G
Sbjct: 113 TTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP- 171
Query: 357 NVLRGHK----------KGTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
L GH+ +G ++S DG ++LW T T + TF++
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 218
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 359 LRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFV 418
L+ G ++S+ D LK+WS+K + T H + +A II G
Sbjct: 142 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA-------IIDRG---- 190
Query: 419 NFSPLDRILISSSGDATIKLW 439
R ++S+S D TI+LW
Sbjct: 191 ------RNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 420 FSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
F P LISSS D +K+W + D ++L GH A+V I++G ++S DG ++
Sbjct: 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206
Query: 480 LWSIKTSTCVSTFDKHALKIRNSDSENDHKG-------FGLPRQL 517
LW T T + TF++ EN H G G RQL
Sbjct: 207 LWECGTGTTIHTFNR---------KENPHDGVNSIALFVGTDRQL 242
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 301 STTGGLKLL----NVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLL 356
+T G +K+L N+ R + H +I + P+ + L S S D +K+WS G
Sbjct: 116 TTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP- 174
Query: 357 NVLRGHK----------KGTQIVSTGADGLLKLWSIKTSTCVSTFDK 393
L GH+ +G ++S DG ++LW T T + TF++
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 359 LRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFV 418
L+ G ++S+ D LK+WS+K + T H + +A II G
Sbjct: 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA-------IIDRG---- 193
Query: 419 NFSPLDRILISSSGDATIKLW 439
R ++S+S D TI+LW
Sbjct: 194 ------RNVLSASLDGTIRLW 208
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 94/246 (38%), Gaps = 64/246 (26%)
Query: 268 GIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVT 327
G++ + HG +L SGS D+TV+VW G +V +GH + C+
Sbjct: 164 GVWALKYAHGG--------ILVSGSTDRTVRVWDIKKGC-CTHVF----EGHNSTVRCLD 210
Query: 328 V--SPNDKLLASGSLDKTVKVW----------------------STTGGLKLLNVLRGHK 363
+ N K + +GS D T+ VW + + VLRGH
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHX 270
Query: 364 K--------GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGV 415
G +VS D L +W + C+ H +I++ + +
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKR------ 324
Query: 416 WFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGAD 475
IS+S D TI++W L + +L+GH A V +K +VS AD
Sbjct: 325 -----------CISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF--LVSAAAD 371
Query: 476 GLLKLW 481
G ++ W
Sbjct: 372 GSIRGW 377
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 27/226 (11%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
+ +G+ DK ++V+ + LL + GH+ + + + + +L SGS D+TV+VW
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQL-----SGHDGGVWALKYA-HGGILVSGSTDRTVRVW 188
Query: 348 STTGGLKLLNVLRGHK-----------KGTQIVSTGA-DGLLKLWSI-KTSTCVSTFDKH 394
G +V GH K + + TG+ D L +W + K S+ ++H
Sbjct: 189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 395 ALKIWTLAITKDENQIITG-----GVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKS 449
+ + T +EN G S I++S S D T+ +W + CL
Sbjct: 248 DYPL--VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI 305
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKH 495
L GH + + ++ + +S D +++W ++ T H
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGH 351
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 58/150 (38%), Gaps = 18/150 (12%)
Query: 243 FPRQSMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTV----ELLASGSLDKTVK 298
P++S P EE + +H P + G + TV ++ SGS D T+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLI 293
Query: 299 VWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNV 358
VW K L +L GH I K S S D T+++W G +L
Sbjct: 294 VWD-VAQXKCLYIL----SGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG-ELXYT 347
Query: 359 LRGHK--------KGTQIVSTGADGLLKLW 380
L+GH +VS ADG ++ W
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 16/201 (7%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
+ SGS D T+++W T G + GH KD+ V S +++ + SGS DKT+K
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFV-----GHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 346 VWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITK 405
+W+T G K H + V + VS +K+W LA K
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNS-------SNPIIVSCGWDKLVKVWNLANCK 206
Query: 406 DENQII--TGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFI 463
+ I TG + V SP + S D LW L + L +L+G D C
Sbjct: 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 266
Query: 464 NKGTQIVSTGADGLLKLWSIK 484
N+ +TG +K+W ++
Sbjct: 267 NRYWLCAATGPS--IKIWDLE 285
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 33/222 (14%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
+++ S S DKT+ +W T + + +GH ++ V +S + + SGS D T++
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 346 VWSTTGGLKLLNVLRGHKKGT----------QIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W T G + GH K QIVS D +KLW+
Sbjct: 112 LWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-------------- 156
Query: 396 LKIWTLAITKDENQIITGGVWF--VNFSP--LDRILISSSGDATIKLWCLTDYVCLKSLE 451
TL + K Q + W V FSP + I++S D +K+W L + +
Sbjct: 157 ----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 452 GHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFD 493
GH + G+ S G DG LW + + T D
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 254
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 58/176 (32%), Gaps = 54/176 (30%)
Query: 312 LRGHKKGHEKDINCVTVSPN-DKLLASGSLDKTVKVWSTTGGLKLLNV----LRGHKKGT 366
LRG KGH + + +P ++ S S DKT+ +W T + LRGH
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 367 QIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRI 426
V +DG L
Sbjct: 90 SDVVISSDGQFAL----------------------------------------------- 102
Query: 427 LISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
S S D T++LW LT + GH VL F + QIVS D +KLW+
Sbjct: 103 --SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 426 ILISSSGDATIKLWCLT----DY-VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKL 480
+++S+S D TI +W LT +Y + ++L GH V + G +S DG L+L
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 481 WSIKTSTCVSTFDKHALKIRNSDSENDHKGFGLPRQLCSRNSD 523
W + T T F H + + +D+ RQ+ S + D
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDN------RQIVSGSRD 149
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 16/201 (7%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
+ SGS D T+++W T G + GH KD+ V S +++ + SGS DKT+K
Sbjct: 76 QFALSGSWDGTLRLWDLTTGTTTRRFV-----GHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 346 VWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITK 405
+W+T G K H + V + VS +K+W LA K
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNS-------SNPIIVSCGWDKLVKVWNLANCK 183
Query: 406 DENQII--TGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFI 463
+ I TG + V SP + S D LW L + L +L+G D C
Sbjct: 184 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 243
Query: 464 NKGTQIVSTGADGLLKLWSIK 484
N+ +TG +K+W ++
Sbjct: 244 NRYWLCAATGPS--IKIWDLE 262
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 33/222 (14%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
+++ S S DKT+ +W T + + +GH ++ V +S + + SGS D T++
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 346 VWSTTGGLKLLNVLRGHKKGT----------QIVSTGADGLLKLWSIKTSTCVSTFDKHA 395
+W T G + GH K QIVS D +KLW+
Sbjct: 89 LWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-------------- 133
Query: 396 LKIWTLAITKDENQIITGGVWF--VNFSP--LDRILISSSGDATIKLWCLTDYVCLKSLE 451
TL + K Q + W V FSP + I++S D +K+W L + +
Sbjct: 134 ----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 452 GHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFD 493
GH + G+ S G DG LW + + T D
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 231
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 58/176 (32%), Gaps = 54/176 (30%)
Query: 312 LRGHKKGHEKDINCVTVSPN-DKLLASGSLDKTVKVWSTTGGLKLLNV----LRGHKKGT 366
LRG KGH + + +P ++ S S DKT+ +W T + LRGH
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 367 QIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRI 426
V +DG L
Sbjct: 67 SDVVISSDGQFAL----------------------------------------------- 79
Query: 427 LISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
S S D T++LW LT + GH VL F + QIVS D +KLW+
Sbjct: 80 --SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 426 ILISSSGDATIKLWCLT----DY-VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKL 480
+++S+S D TI +W LT +Y + ++L GH V + G +S DG L+L
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 481 WSIKTSTCVSTFDKHALKIRNSDSENDHK 509
W + T T F H + + +D++
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTT---GGLKLLNVLRGHKKG--------- 365
GH +++ + +P+ + LASG D V VW + GG L H+
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 366 -TQIVSTG---ADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFS 421
+ +++TG +D +++W++ + C+S D H+ Q+ + + +S
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-------------QVCS-----ILWS 340
Query: 422 PLDRILISSSGDATIKL--WCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
P + LIS G A +L W + L+GH + VL G + S AD L+
Sbjct: 341 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 400
Query: 480 LW 481
LW
Sbjct: 401 LW 402
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 100/228 (43%), Gaps = 30/228 (13%)
Query: 280 YTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGS 339
++ G V +A LD +V +WS + G +L +L+ + G + I+ V LA G+
Sbjct: 124 WSSGNVLAVA---LDNSVYLWSASSG-DILQLLQMEQPG--EYISSVAWIKEGNYLAVGT 177
Query: 340 LDKTVKVWSTTGGLKLLNVLRGHKK------GTQIVSTGA-DGLLKLWSIKTSTC-VSTF 391
V++W +L N+ + + I+S+G+ G + ++ + V+T
Sbjct: 178 SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 392 DKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLE 451
H+ ++ L D + +GG L + S+ G+ +V L++
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGG-----NDNLVNVWPSAPGEG--------GWVPLQTFT 284
Query: 452 GHDASVLRCHFINKGTQIVSTG---ADGLLKLWSIKTSTCVSTFDKHA 496
H +V + + +++TG +D +++W++ + C+S D H+
Sbjct: 285 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 332
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 317 KGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
KGH + +T+SP+ +AS + D+T+++W
Sbjct: 372 KGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTT---GGLKLLNVLRGHKKG--------- 365
GH +++ + +P+ + LASG D V VW + GG L H+
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 366 -TQIVSTG---ADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFS 421
+ +++TG +D +++W++ + C+S D H+ Q+ + + +S
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-------------QVCS-----ILWS 329
Query: 422 PLDRILISSSGDATIKL--WCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
P + LIS G A +L W + L+GH + VL G + S AD L+
Sbjct: 330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 389
Query: 480 LW 481
LW
Sbjct: 390 LW 391
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 100/228 (43%), Gaps = 30/228 (13%)
Query: 280 YTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGS 339
++ G V +A LD +V +WS + G +L +L+ + G + I+ V LA G+
Sbjct: 113 WSSGNVLAVA---LDNSVYLWSASSG-DILQLLQMEQPG--EYISSVAWIKEGNYLAVGT 166
Query: 340 LDKTVKVWSTTGGLKLLNVLRGHKK------GTQIVSTGA-DGLLKLWSIKTSTC-VSTF 391
V++W +L N+ + + I+S+G+ G + ++ + V+T
Sbjct: 167 SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 392 DKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLE 451
H+ ++ L D + +GG L + S+ G+ +V L++
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGG-----NDNLVNVWPSAPGEG--------GWVPLQTFT 273
Query: 452 GHDASVLRCHFINKGTQIVSTG---ADGLLKLWSIKTSTCVSTFDKHA 496
H +V + + +++TG +D +++W++ + C+S D H+
Sbjct: 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 321
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 317 KGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
KGH + +T+SP+ +AS + D+T+++W
Sbjct: 361 KGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTT---GGLKLLNVLRGHKKG--------- 365
GH +++ + +P+ + LASG D V VW + GG L H+
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 366 -TQIVSTG---ADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFS 421
+ +++TG +D +++W++ + C+S D H+ Q+ + + +S
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-------------QVCS-----ILWS 249
Query: 422 PLDRILISSSGDATIKL--WCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLK 479
P + LIS G A +L W + L+GH + VL G + S AD L+
Sbjct: 250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 309
Query: 480 LW 481
LW
Sbjct: 310 LW 311
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 109/261 (41%), Gaps = 41/261 (15%)
Query: 247 SMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGGL 306
S+ L+ E R Y+ L ++ G V +A LD +V +WS + G
Sbjct: 11 SLPDRILDAPEIRNDYYLNLVD-----------WSSGNVLAVA---LDNSVYLWSASSG- 55
Query: 307 KLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKK-- 364
+L +L+ + G + I+ V LA G+ V++W +L N+ +
Sbjct: 56 DILQLLQMEQPG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG 113
Query: 365 ----GTQIVSTGA-DGLLKLWSIKTSTC-VSTFDKHALKIWTLAITKDENQIITGGVWFV 418
+ I+S+G+ G + ++ + V+T H+ ++ L D + +GG
Sbjct: 114 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG---- 169
Query: 419 NFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTG---AD 475
L + S+ G+ +V L++ H +V + + +++TG +D
Sbjct: 170 -NDNLVNVWPSAPGEG--------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220
Query: 476 GLLKLWSIKTSTCVSTFDKHA 496
+++W++ + C+S D H+
Sbjct: 221 RHIRIWNVCSGACLSAVDAHS 241
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 317 KGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
KGH + +T+SP+ +AS + D+T+++W
Sbjct: 281 KGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 22/190 (11%)
Query: 317 KGHEKDINCVTVSPNDKLLASGSLDKTVKVW---------STTGGLKLLNVLRGHKKGTQ 367
KGH + C+ + + + S S D V VW + T + G
Sbjct: 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA 120
Query: 368 IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRIL 427
I G D ++ + TFDK+ +A K + T + +F+ D +
Sbjct: 121 IACGGLDNKCSVYPL-------TFDKNE----NMAAKKKSVAMHTNYLSACSFTNSDMQI 169
Query: 428 ISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFI--NKGTQIVSTGADGLLKLWSIKT 485
+++SGD T LW + L+S GH A VL G VS G D +W +++
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 486 STCVSTFDKH 495
CV F+ H
Sbjct: 230 GQCVQAFETH 239
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 84/214 (39%), Gaps = 32/214 (14%)
Query: 280 YTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPND--KLLAS 337
+T +++L + S D T +W G +LL GH D+ C+ ++P++ S
Sbjct: 162 FTNSDMQIL-TASGDGTCALWDVESG-QLLQSFHGHGA----DVLCLDLAPSETGNTFVS 215
Query: 338 GSLDKTVKVWSTTGGLKL---------LNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCV 388
G DK VW G + +N +R + G S D +L+ ++ V
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 389 STFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLK 448
+ + K + I G V+FS R+L + D TI +W + +
Sbjct: 276 AIYSKES---------------IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320
Query: 449 SLEGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
L GH+ V GT S D L++W+
Sbjct: 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 367 QIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDE--NQIITGGVWFVNFSPLD 424
QI++ DG LW +++ + +F H + L + E N ++GG
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC--------- 218
Query: 425 RILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIK 484
D +W + C+++ E H++ V + G S D +L+ ++
Sbjct: 219 --------DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Query: 485 TSTCVSTFDKHAL 497
V+ + K ++
Sbjct: 271 ADREVAIYSKESI 283
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 448 KSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKI 499
KS+ H + C F N QI++ DG LW +++ + +F H +
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 199
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 5 VTCFDVIPQITSEFSVHCGRDKVLFTWDLSSRKQLRSYPAYES 47
V C D+ P T V G DK WD+ S + ++++ +ES
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 241
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 104/260 (40%), Gaps = 43/260 (16%)
Query: 246 QSMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGG 305
+++P ++ R+T L I+ A + G LL S S D + +W +
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIY-------AMHWGTDSRLLVSASQDGKLIIWDSYTT 87
Query: 306 LKLLNV-LRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW---STTGGLKLLNVLRG 361
K+ + LR + +P+ +A G LD ++ + G +++ L G
Sbjct: 88 NKVHAIPLRSSW------VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 362 HK---------KGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIIT 412
H QIV++ D LW I+T +TF H T
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-----------------T 184
Query: 413 GGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVST 472
G V ++ +P R+ +S + DA+ KLW + + +C ++ GH++ + F G +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 473 GADGLLKLWSIKTSTCVSTF 492
D +L+ ++ + T+
Sbjct: 245 SDDATCRLFDLRADQELMTY 264
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 319 HEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLK 378
H D+ ++++P+ +L SG+ D + K+W G+ GH+ + +G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAF 241
Query: 379 LWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKL 438
+TC FD A + +T + II G + V+FS R+L++ D +
Sbjct: 242 ATGSDDATC-RLFDLRADQ---ELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 439 WCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
W L GHD V + G + + D LK+W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL +G D VW + G GH+ ++C+ V+ + +A+GS D +K
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 346 VWS 348
+W+
Sbjct: 338 IWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 104/260 (40%), Gaps = 43/260 (16%)
Query: 246 QSMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGG 305
+++P ++ R+T L I+ A + G LL S S D + +W +
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIY-------AMHWGTDSRLLVSASQDGKLIIWDSYTT 87
Query: 306 LKLLNV-LRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW---STTGGLKLLNVLRG 361
K+ + LR + +P+ +A G LD ++ + G +++ L G
Sbjct: 88 NKVHAIPLRSSW------VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 362 HK---------KGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIIT 412
H QIV++ D LW I+T +TF H T
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-----------------T 184
Query: 413 GGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVST 472
G V ++ +P R+ +S + DA+ KLW + + +C ++ GH++ + F G +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 473 GADGLLKLWSIKTSTCVSTF 492
D +L+ ++ + T+
Sbjct: 245 SDDATCRLFDLRADQELMTY 264
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 319 HEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLK 378
H D+ ++++P+ +L SG+ D + K+W G+ GH+ + +G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAF 241
Query: 379 LWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKL 438
+TC FD A + +T + II G + V+FS R+L++ D +
Sbjct: 242 ATGSDDATC-RLFDLRADQ---ELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 439 WCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
W L GHD V + G + + D LK+W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL +G D VW + G GH+ ++C+ V+ + +A+GS D +K
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 346 VWS 348
+W+
Sbjct: 338 IWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 104/260 (40%), Gaps = 43/260 (16%)
Query: 246 QSMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGG 305
+++P ++ R+T L I+ A + G LL S S D + +W +
Sbjct: 46 NNIDPVGRIQMRTRRTLRGHLAKIY-------AMHWGTDSRLLVSASQDGKLIIWDSYTT 98
Query: 306 LKLLNV-LRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW---STTGGLKLLNVLRG 361
K+ + LR + +P+ +A G LD ++ + G +++ L G
Sbjct: 99 NKVHAIPLRSSW------VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 152
Query: 362 HK---------KGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIIT 412
H QIV++ D LW I+T +TF H T
Sbjct: 153 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-----------------T 195
Query: 413 GGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVST 472
G V ++ +P R+ +S + DA+ KLW + + +C ++ GH++ + F G +
Sbjct: 196 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 255
Query: 473 GADGLLKLWSIKTSTCVSTF 492
D +L+ ++ + T+
Sbjct: 256 SDDATCRLFDLRADQELMTY 275
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 319 HEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLK 378
H D+ ++++P+ +L SG+ D + K+W G+ GH+ + +G
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAF 252
Query: 379 LWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKL 438
+TC FD A + +T + II G + V+FS R+L++ D +
Sbjct: 253 ATGSDDATC-RLFDLRADQ---ELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDDFNCNV 307
Query: 439 WCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
W L GHD V + G + + D LK+W+
Sbjct: 308 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL +G D VW + G GH+ ++C+ V+ + +A+GS D +K
Sbjct: 294 RLLLAGYDDFNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 348
Query: 346 VWS 348
+W+
Sbjct: 349 IWN 351
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 115/292 (39%), Gaps = 55/292 (18%)
Query: 237 VKEEDLFPRQSMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTVELLASGSLDKT 296
V + L R S + + ++ E T P +++ F G + LA+G+ D+
Sbjct: 92 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV---CFSPDG--KFLATGAEDRL 146
Query: 297 VKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW--------- 347
+++W K++ +L +GHE+DI + P+ L SGS D+TV++W
Sbjct: 147 IRIWDIEN-RKIVMIL----QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201
Query: 348 --STTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITK 405
S G+ + V G G I + D +++W +T V D
Sbjct: 202 TLSIEDGVTTVAVSPG--DGKYIAAGSLDRAVRVWDSETGFLVERLDS------------ 247
Query: 406 DENQIITG---GVWFVNFSPLDRILISSSGDATIKLWCLTDY------------VCLKSL 450
EN+ TG V+ V F+ + ++S S D ++KLW L + C +
Sbjct: 248 -ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306
Query: 451 EGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRNS 502
GH VL I+S D + W K+ + H RNS
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH----RNS 354
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 104/260 (40%), Gaps = 43/260 (16%)
Query: 246 QSMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGG 305
+++P ++ R+T L I+ A + G LL S S D + +W +
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIY-------AMHWGTDSRLLLSASQDGKLIIWDSYTT 87
Query: 306 LKLLNV-LRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW---STTGGLKLLNVLRG 361
K+ + LR + +P+ +A G LD ++ + G +++ L G
Sbjct: 88 NKVHAIPLRSSW------VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 362 HK---------KGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIIT 412
H QIV++ D LW I+T +TF H T
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-----------------T 184
Query: 413 GGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVST 472
G V ++ +P R+ +S + DA+ KLW + + +C ++ GH++ + F G +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 473 GADGLLKLWSIKTSTCVSTF 492
D +L+ ++ + T+
Sbjct: 245 SDDATCRLFDLRADQELMTY 264
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 319 HEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLK 378
H D+ ++++P+ +L SG+ D + K+W G+ GH+ + +G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAF 241
Query: 379 LWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKL 438
+TC FD A + +T + II G + V+FS R+L++ D +
Sbjct: 242 ATGSDDATC-RLFDLRADQ---ELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 439 WCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
W L GHD V + G + + D LK+W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 71/195 (36%), Gaps = 29/195 (14%)
Query: 317 KGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNV-LRGH--------KKGTQ 367
+GH I + + +LL S S D + +W + K+ + LR G
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 368 IVSTGADGLLKLWSIKTSTC-VSTFDKHALKIWTLAITK--DENQIITGGVWFVNFSPLD 424
+ G D + ++++KT V + A L+ + D+NQI+T
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT------------ 159
Query: 425 RILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIK 484
SSGD T LW + + GH V+ VS D KLW ++
Sbjct: 160 -----SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 485 TSTCVSTFDKHALKI 499
C TF H I
Sbjct: 215 EGMCRQTFTGHESDI 229
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL +G D VW + G GH+ ++C+ V+ + +A+GS D +K
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 346 VWS 348
+W+
Sbjct: 338 IWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 104/260 (40%), Gaps = 43/260 (16%)
Query: 246 QSMEPSTLEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGG 305
+++P ++ R+T L I+ A + G LL S S D + +W +
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIY-------AMHWGTDSRLLLSASQDGKLIIWDSYTT 87
Query: 306 LKLLNV-LRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW---STTGGLKLLNVLRG 361
K+ + LR + +P+ +A G LD ++ + G +++ L G
Sbjct: 88 NKVHAIPLRSSW------VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 362 HK---------KGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIIT 412
H QIV++ D LW I+T +TF H T
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-----------------T 184
Query: 413 GGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVST 472
G V ++ +P R+ +S + DA+ KLW + + +C ++ GH++ + F G +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 473 GADGLLKLWSIKTSTCVSTF 492
D +L+ ++ + T+
Sbjct: 245 SDDATCRLFDLRADQELMTY 264
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 319 HEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLK 378
H D+ ++++P+ +L SG+ D + K+W G+ GH+ + +G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAF 241
Query: 379 LWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKL 438
+TC FD A + +T + II G + V+FS R+L++ D +
Sbjct: 242 ATGSDDATC-RLFDLRADQ---ELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 439 WCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWS 482
W L GHD V + G + + D LK+W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 71/195 (36%), Gaps = 29/195 (14%)
Query: 317 KGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNV-LRGH--------KKGTQ 367
+GH I + + +LL S S D + +W + K+ + LR G
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 368 IVSTGADGLLKLWSIKTSTC-VSTFDKHALKIWTLAITK--DENQIITGGVWFVNFSPLD 424
+ G D + ++++KT V + A L+ + D+NQI+T
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT------------ 159
Query: 425 RILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIK 484
SSGD T LW + + GH V+ VS D KLW ++
Sbjct: 160 -----SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 485 TSTCVSTFDKHALKI 499
C TF H I
Sbjct: 215 EGMCRQTFTGHESDI 229
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
LL +G D VW + G GH+ ++C+ V+ + +A+GS D +K
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 346 VWS 348
+W+
Sbjct: 338 IWN 340
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 29/214 (13%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKK--GHEKDINCVTVSPNDKLLASGSLDKTV 344
+L SGS DKTV +W + HK GH ++ + +S + S S DKT+
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 345 KVWSTTGGLKLLNVLRGHKK----------GTQIVSTGADGLLKLWSIKTSTCVSTFDKH 394
++W G + GH+ QI+S GA+ +KLW+I S+ +K
Sbjct: 101 RLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159
Query: 395 ALKIWT-----LAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKS 449
W I K N++ P S D +K+W T++ +
Sbjct: 160 NHSDWVSCVRYSPIMKSANKV----------QPFAPYFASVGWDGRLKVWN-TNFQIRYT 208
Query: 450 LEGHDASVLRCHFINKGTQIVSTGADGLLKLWSI 483
+ H+++V G I + G D L +W I
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 51/211 (24%)
Query: 306 LKLLNVLRGHKKGHEKDINCVTVSPNDK------LLASGSLDKTVKVW------------ 347
L + V RG +GH + + + K +L SGS DKTV +W
Sbjct: 7 LDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG 66
Query: 348 ----STTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAI 403
+ TG ++ L ++ +S+ D L+LW ++T T F H +++++A
Sbjct: 67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA- 125
Query: 404 TKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHD----ASVLR 459
FSP +R ++S+ + IKLW + S E + S +R
Sbjct: 126 ----------------FSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR 169
Query: 460 CHFINKGTQIV--------STGADGLLKLWS 482
I K V S G DG LK+W+
Sbjct: 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
AS D +KVW+T + R K HE ++N +++SPN K +A+G DK + +W
Sbjct: 187 FASVGWDGRLKVWNTNFQI------RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Query: 348 STTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFD 392
L L R G+ I + L+ ++ T V F+
Sbjct: 241 DI---LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFN 282
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 426 ILISSSGDATIKLWCLTDY-------VCLKSLEGHDASVLRCHFINKGTQIVSTGADGLL 478
+LIS S D T+ +W L + + K+L GH+ V + +S+ D L
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 479 KLWSIKTSTCVSTFDKHALKIRNSDSENDHKGFGLPRQLCSRNSDCEYR 527
+LW ++T T F H ++ + D+ RQ+ S ++ E +
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDN------RQILSAGAEREIK 143
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 363 KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGG------VW 416
G VS D L+LW+++ C F H + ++A + D QI++GG VW
Sbjct: 77 NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVW 136
Query: 417 --------------------FVNFSP-LDRILISSSG-DATIKLWCLTDYVCLKSLEGHD 454
V FSP LD +I S G D +K+W L + L+GH
Sbjct: 137 NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT 196
Query: 455 ASVLRCHFINKGTQIVSTGADGLLKLWSI 483
V G+ S+ DG+ +LW +
Sbjct: 197 NYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 428 ISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTST 487
+S+S D +++LW L + C GH VL F QIVS G D L++W++K
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GE 141
Query: 488 CVSTFDKHA 496
C+ T + A
Sbjct: 142 CMHTLSRGA 150
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
++ SG D VKVW G + ++ KGH + VTVSP+ L AS D ++
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDL-----KGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 347 WSTTGGLKLLNVLRG 361
W T G L + G
Sbjct: 223 WDLTKGEALSEMAAG 237
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 92/217 (42%), Gaps = 52/217 (23%)
Query: 323 INCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGH----------KKGTQIVSTG 372
+ C+ S + + +G + +++W+ TG L LNVL H K GT I+S
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGAL--LNVLNFHRAPIVSVKWNKDGTHIISMD 168
Query: 373 ADGLLKLWSIKTSTCVSTFD-------------------------------------KHA 395
+ + LW++ + T + F+ K A
Sbjct: 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA 228
Query: 396 LKIWTLAITKDENQIIT--GGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGH 453
+ ++ + ++I G + + F+ +++L+S+S D T+++W + GH
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 288
Query: 454 DASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVS 490
S++ ++ +++S DG ++LWS+K +T ++
Sbjct: 289 SQSIVSASWVGD-DKVISCSMDGSVRLWSLKQNTLLA 324
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGT---------QI 368
GH I+ + + +KLL S S D T+++W G N GH + ++
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDDKV 303
Query: 369 VSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKD 406
+S DG ++LWS+K +T ++ + I+ I++D
Sbjct: 304 ISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD 341
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 427 LISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTS 486
+++ + ++LW T L L H A ++ + GT I+S + + LW++ +
Sbjct: 123 IVTGVENGELRLWNKTG-ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181
Query: 487 TCVSTFDKHALKIRNSDSENDHKGFG 512
T + F+ + ++EN H G G
Sbjct: 182 TVMQHFELKETGGSSINAEN-HSGDG 206
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSP-NDKLLASG--SLDKTV 344
LASG D V++W + K H + V P LLA+G ++DK +
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFT-----KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286
Query: 345 KVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVST--FDKHALKIWTLA 402
W+ G ++ V G+Q+ S +WS + +ST F + L IW+ +
Sbjct: 287 HFWNAATGARVNTV----DAGSQVTSL-------IWSPHSKEIMSTHGFPDNNLSIWSYS 335
Query: 403 ITKDENQIITGG----VWFVNFSPLDRILISSSGDATIKLWCLTD 443
+ Q+ V + SP RIL +++ D +K W + D
Sbjct: 336 SSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 20/187 (10%)
Query: 306 LKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKG 365
+++ N G +GH ++ + + LASG D V++W + K
Sbjct: 203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF------TKT 256
Query: 366 TQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAI-----TKDENQIITGGVWFVNF 420
+ A S +T T DK + W A T D +T +W
Sbjct: 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVDAGSQVTSLIW---- 311
Query: 421 SPLDRILISSSG--DATIKLWCLTDYVCLKSLE--GHDASVLRCHFINKGTQIVSTGADG 476
SP + ++S+ G D + +W + K ++ HD VL G + + +D
Sbjct: 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371
Query: 477 LLKLWSI 483
LK W +
Sbjct: 372 NLKFWRV 378
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 447 LKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
+ +L+GH + V + + G Q+ S G D ++++W ++S T H ++
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 25/211 (11%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTV-SPNDKLLASGSLDKTVKV 346
L +GS D+T +W T G ++ GH D+ +++ S N + SGS D TV++
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 347 WSTTGGLKLLNVLRGHK----------KGTQIVSTGADGLLKLWSIKTSTCVSTFDKHAL 396
W + + GH+ G + + DG +L+ ++T H L
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--------HQL 284
Query: 397 KIWTLAITKDENQIITGGVWFVNFSPLDRILIS--SSGDATIKLWCLTDYVC-LKSLEGH 453
+++ +++N++ V V FS R+L + S+GD + L + V L +L+
Sbjct: 285 QVYNREPDRNDNELPI--VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS 342
Query: 454 DASVLRCHFINKGTQIVSTGA-DGLLKLWSI 483
+ C ++ + TG+ D LK+W+
Sbjct: 343 HEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 54/238 (22%)
Query: 301 STTGGLKLLNVLRGHKKGHEKDINCVTV-----SPNDKLLASGSLDKTVKVWSTT----- 350
S G L + N L K H ++C V +PN + +A G LD +++ +
Sbjct: 85 SQDGRLIVWNALTSQKT-HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143
Query: 351 -GGLKLLNVLRGHK-----------KGTQIVSTGADGLLKLWSIKTSTCVSTFDK----- 393
G + + VL GHK + T++++ D LW + T +S F
Sbjct: 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203
Query: 394 HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCL-TDYVCLKSLEG 452
H + +L+I S + IS S D T++LW L +++ G
Sbjct: 204 HTADVLSLSIN----------------SLNANMFISGSCDTTVRLWDLRITSRAVRTYHG 247
Query: 453 HDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIRNSDSE-NDHK 509
H+ + F G + + DG +L+ ++T H L++ N + + ND++
Sbjct: 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--------HQLQVYNREPDRNDNE 297
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 271 VPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSP 330
+P AF G LL +G + VW T +LN L + HE I+C+ +S
Sbjct: 298 LPIVTSVAFSISG--RLLFAGYSNGDCYVWDTLLAEMVLN-LGTLQNSHEGRISCLGLSS 354
Query: 331 NDKLLASGSLDKTVKVWSTTGGLKLL 356
+ L +GS DK +K+W+ +G K++
Sbjct: 355 DGSALCTGSWDKNLKIWAFSGHRKIV 380
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 30/180 (16%)
Query: 256 LEKRKTYHFPLFGIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTT------GGLKLL 309
L +KT+ L +V E AF G + +A G LD +++ + G + +
Sbjct: 96 LTSQKTHAIKLHCPWVMEC---AFAPNG--QSVACGGLDSACSIFNLSSQADRDGNMPVS 150
Query: 310 NVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKL-------------- 355
VL GHK G+ +C V + L +GS D+T +W T G ++
Sbjct: 151 RVLTGHK-GYAS--SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207
Query: 356 -LNVLRGHKKGTQIVSTGADGLLKLWSIK-TSTCVSTFDKHALKIWTLAITKDENQIITG 413
L++ +S D ++LW ++ TS V T+ H I ++ D + TG
Sbjct: 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 285 VELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTV 344
+ SGS D TV++W L++ + GHE DIN V P+ + +GS D T
Sbjct: 218 ANMFISGSCDTTVRLWD----LRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273
Query: 345 KVWSTTGGLKL 355
+++ G +L
Sbjct: 274 RLFDMRTGHQL 284
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 442 TDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKI 499
TD VC ++L+GH V + + IVS DG L +W+ TS HA+K+
Sbjct: 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----KTHAIKL 106
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 368 IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGV----WFVNFS-- 421
IVS DG L +W+ TS H + A + + GG+ N S
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140
Query: 422 -------PLDRI--------------------LISSSGDATIKLWCLT--DYVCLKSLE- 451
P+ R+ LI+ SGD T LW +T + + E
Sbjct: 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200
Query: 452 --GHDASVLRCHFIN-KGTQIVSTGADGLLKLWSIK-TSTCVSTFDKHALKIRNSDSEND 507
GH A VL + +S D ++LW ++ TS V T+ H I + D
Sbjct: 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260
Query: 508 HKGFG 512
+ FG
Sbjct: 261 GQRFG 265
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 67/168 (39%), Gaps = 38/168 (22%)
Query: 265 PLFGIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDIN 324
P F + EA G + + L +G +DK V + GH +
Sbjct: 44 PKFMALIXEASGGGAFL--VLPLGKTGRVDKNVPL----------------VXGHTAPVL 85
Query: 325 CVTVSP-NDKLLASGSLDKTVKVWSTT-GGLKL-----LNVLRGHKKGTQIV-------- 369
+ P ND ++ASGS D TV VW GGL L + L GH K IV
Sbjct: 86 DIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN 145
Query: 370 ---STGADGLLKLWSIKTSTCVSTF--DKHALKIWTLAITKDENQIIT 412
S G D ++ +W + T V T D H I+++ ++D I T
Sbjct: 146 VLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 424 DRILISSSGDATIKLWCLTD---YVCLK----SLEGHDASV-LRCHFINKGTQIVSTGAD 475
D ++ S S D T+ +W + D + L+ +LEGH V + ++S G D
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXD 153
Query: 476 GLLKLWSIKTSTCVSTF--DKHALKIRNSDSEND 507
++ +W + T V T D H I + D D
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 318 GHEKDINCVTVSP-NDKLLASGSLDKTVKVWSTT-GGLKL-----LNVLRGHKKGTQIV- 369
GH + + P ND ++ASGS D TV VW GGL L + L GH K IV
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 370 ----------STGADGLLKLWSIKTSTCVSTF--DKHALKIWTLAITKDENQIIT 412
S G D ++ +W + T V T D H I+++ ++D I T
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 287 LLASGSLDKTVKVWSTT-GGLKL-LNVLRGHKKGHEKDINCVTVSPNDK-LLASGSLDKT 343
++ASGS D TV VW GGL L L +GH K + V P + +L S D
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 344 VKVWSTTGGLKLLNV-----------LRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFD 392
+ VW G +L + + + G I ++ D +++ + T V+ D
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD 215
Query: 393 K-HALKIWTLAITKDENQIITGG 414
+ H A+ E +I+T G
Sbjct: 216 RPHEGTRPVHAVFVSEGKILTTG 238
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 424 DRILISSSGDATIKLWCLTD---YVCLK----SLEGHDASV-LRCHFINKGTQIVSTGAD 475
D ++ S S D T+ +W + D + L+ +LEGH V + ++S G D
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153
Query: 476 GLLKLWSIKTSTCVSTF--DKHALKIRNSDSEND 507
++ +W + T V T D H I + D D
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 83/214 (38%), Gaps = 42/214 (19%)
Query: 302 TTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRG 361
T G L L GH+ N ++S D ++ SGS DKT KVW L+ L+
Sbjct: 90 ATSGEDPLYTLIGHQG------NVCSLSFQDGVVISGSWDKTAKVWKEG---SLVYNLQA 140
Query: 362 HKKG-----------TQIVSTGADGLLKLWSIKTSTCVSTFDK-HALKIWTLAITKDENQ 409
H + ++ AD +KLW + + TF H + LA+ D +
Sbjct: 141 HNASVWDAKVVSFSENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGH- 197
Query: 410 IITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQI 469
IS S D IKL L++ EGH++ V + G I
Sbjct: 198 -----------------FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG-DI 239
Query: 470 VSTGADGLLKLWSIKTSTCVSTFDKHALKIRNSD 503
VS G D +++WS + + A+ I + D
Sbjct: 240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD 273
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 79/198 (39%), Gaps = 42/198 (21%)
Query: 335 LASGSLDKTVKVWSTTG---------GLKLLN----------VLRGHK----KGTQIVST 371
+AS S D TV++WS G LN +L G K G + +T
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 372 -GADGLLKLWSIKTSTCVSTF----------DKHALKIWTLAITKDENQIITGGVW---F 417
G D L L + + C +F DK A K+W Q VW
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTA-KVWKEGSLVYNLQAHNASVWDAKV 150
Query: 418 VNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGL 477
V+FS + +++S D TIKLW D V +K+ G V+R + +S DGL
Sbjct: 151 VSFS--ENKFLTASADKTIKLW-QNDKV-IKTFSGIHNDVVRHLAVVDDGHFISCSNDGL 206
Query: 478 LKLWSIKTSTCVSTFDKH 495
+KL T + T++ H
Sbjct: 207 IKLVDXHTGDVLRTYEGH 224
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 48/205 (23%)
Query: 308 LLNVLRGHKKGHEKDINCVTVSPNDK-LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGT 366
+ ++ R H H + V P+D + S S DKT+KVW T L+ +V +
Sbjct: 87 VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQTADVFNFEETVY 145
Query: 367 Q-----------IVSTGADGL-LKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGG 414
+V+ G G ++L +K+ +C H +I LA
Sbjct: 146 SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI--LA------------ 191
Query: 415 VWFVNFSP-LDRILISSSGDATIKLWCLTDYV-CLKSLEGHDA-------SVLRCH---- 461
V++SP D IL ++S D+ +KLW + CL +L+ H+ S H
Sbjct: 192 ---VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248
Query: 462 ----FINKGTQIVSTGADGLLKLWS 482
F + G +++ G D ++LW+
Sbjct: 249 NGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKV 346
+ S S DKT+KVW T L+ +V + + ++ VS L+A G+ V++
Sbjct: 114 MFTSSSFDKTLKVWDTN-TLQTADVFNFEETVYSHHMS--PVSTKHCLVAVGTRGPKVQL 170
Query: 347 WSTTGGLKLLNVLRGHKKGTQIVS-----------TGADGLLKLWSI-KTSTCVSTFDKH 394
G ++L+GH++ VS AD +KLW + + S C+ T D+H
Sbjct: 171 CDLKSG-SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229
Query: 395 ALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLW 439
K + N G V + F+ L++ D ++LW
Sbjct: 230 NGK--KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 19/79 (24%)
Query: 323 INCVTVSPNDK----------LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKG------- 365
IN ++ P +K L+A+GSLD + ++S +K++ L HK G
Sbjct: 534 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 593
Query: 366 --TQIVSTGADGLLKLWSI 382
+ +VS+GAD +K W++
Sbjct: 594 TPSTLVSSGADACIKRWNV 612
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 26/134 (19%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVS--TFDKHALKIWTLAITKDEN 408
GG+ L+ L K T GAD +++W + TS CV T DK L + + N
Sbjct: 254 GGIFALSWLDSQKFAT----VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 309
Query: 409 QIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQ 468
I IS S D T+ + L LK++ GH+ +
Sbjct: 310 GRI----------------ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV----NP 349
Query: 469 IVSTGADGLLKLWS 482
++S DG + WS
Sbjct: 350 LISGSYDGRIMEWS 363
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 274 AEHGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDK 333
AE GA +L+A+GSLD + ++S +K++ L HK G +N +
Sbjct: 542 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG----VNNLLWETPST 597
Query: 334 LLASGSLDKTVKVWS 348
L++SG+ D +K W+
Sbjct: 598 LVSSGA-DACIKRWN 611
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 87/241 (36%), Gaps = 64/241 (26%)
Query: 313 RGHKKGHEKDINCVTVSPNDKL-LASGSLDKTVKVW--------STTG-GLKLLNVLRGH 362
G+ G + +N V P+ + SGS D TV ++ ST G K ++ +R +
Sbjct: 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 199
Query: 363 KKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSP 422
G+ STG DG + L++ T F+ +LK N +G V+ + +SP
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK----------NVAHSGSVFGLTWSP 249
Query: 423 LDRILISSSGDATIKLWCLTDYVCLKSLE------------------------------- 451
+ S+S D TIK+W + K++
Sbjct: 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309
Query: 452 ------------GHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTF-DKHALK 498
GH+ ++ G + S A+G + W I T F D HA
Sbjct: 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369
Query: 499 I 499
I
Sbjct: 370 I 370
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 319 HEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHK-----------KGTQ 367
H + CV+ SP++ LA+GSLD +V VW+ +++G T
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594
Query: 368 IVSTGADGLLKLWSI 382
IVS G D +K W++
Sbjct: 595 IVSAGQDSNIKFWNV 609
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 33/213 (15%)
Query: 289 ASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGS--------L 340
ASG + V++W TT +L G KDI+ + S + G
Sbjct: 75 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 134
Query: 341 DKTVKVWSTTGGLKLLN-VLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIW 399
D + TG + +N V + +I+S D + ++ STF +H
Sbjct: 135 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH----- 189
Query: 400 TLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLE-------G 452
T V V ++P + S+ GD TI L+ D E
Sbjct: 190 ------------TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 453 HDASVLRCHFINKGTQIVSTGADGLLKLWSIKT 485
H SV + GT+I S AD +K+W++ T
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 323 INCVTVSPNDK----------LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKG------- 365
IN ++ P +K L+A+GSLD + ++S K++ L HK G
Sbjct: 534 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE 593
Query: 366 --TQIVSTGADGLLKLWSI 382
+ +VS+GAD +K W++
Sbjct: 594 TPSTLVSSGADACIKRWNV 612
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 26/133 (19%)
Query: 351 GGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVS--TFDKHALKIWTLAITKDEN 408
GG+ L+ L K T GAD +++W + TS CV T DK L + + N
Sbjct: 254 GGIFALSWLDSQKFAT----VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 309
Query: 409 QIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQ 468
I IS S D T+ + L LK++ GH+ +
Sbjct: 310 GRI----------------ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV----NP 349
Query: 469 IVSTGADGLLKLW 481
++S DG + W
Sbjct: 350 LISGSYDGRIXEW 362
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 274 AEHGAFYTGGTVELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDK 333
AE GA +L+A+GSLD + ++S K++ L HK G +N +
Sbjct: 542 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDG----VNNLLWETPST 597
Query: 334 LLASGSLDKTVKVWS 348
L++SG+ D +K W+
Sbjct: 598 LVSSGA-DACIKRWN 611
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 368 IVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLD-RI 426
+ G+ G++++ + T C+ + H I N++ F P D +
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKHYVGHGNAI---------NEL--------KFHPRDPNL 166
Query: 427 LISSSGDATIKLWCL---TDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLWSI 483
L+S S D ++LW + T +EGH VL + G +I+S G D LKLW I
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 484 KT 485
+
Sbjct: 227 NS 228
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 315 HKKGHEKDINCVTVSPND-KLLASGSLDKTVKVWS--TTGGLKLLNVLRGHKK------- 364
H GH IN + P D LL S S D +++W+ T + + + GH+
Sbjct: 146 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 205
Query: 365 ---GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFS 421
G +I+S G D LKLW I + ++ + + K I+ + F +FS
Sbjct: 206 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES----YDYNPNKTNRPFISQKIHFPDFS 261
Query: 422 PLD 424
D
Sbjct: 262 TRD 264
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 418 VNFSPLD-RILISSSGDATIKLWCL---TDYVCLKSLEGHDASVLRCHFINKGTQIVSTG 473
+ F P D +L+S S D ++LW + T +EGH VL + G +I+S G
Sbjct: 116 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 175
Query: 474 ADGLLKLWSIKT 485
D LKLW I +
Sbjct: 176 MDHSLKLWRINS 187
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 315 HKKGHEKDINCVTVSPND-KLLASGSLDKTVKVWS--TTGGLKLLNVLRGHKK------- 364
H GH IN + P D LL S S D +++W+ T + + + GH+
Sbjct: 105 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 164
Query: 365 ---GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFS 421
G +I+S G D LKLW I + ++ + + K I+ + F +FS
Sbjct: 165 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES----YDYNPNKTNRPFISQKIHFPDFS 220
Query: 422 PLD 424
D
Sbjct: 221 TRD 223
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 418 VNFSPLD-RILISSSGDATIKLWCL---TDYVCLKSLEGHDASVLRCHFINKGTQIVSTG 473
+ F P D +L+S S D ++LW + T +EGH VL + G +I+S G
Sbjct: 121 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180
Query: 474 ADGLLKLWSIKT 485
D LKLW I +
Sbjct: 181 MDHSLKLWRINS 192
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 315 HKKGHEKDINCVTVSPND-KLLASGSLDKTVKVWS--TTGGLKLLNVLRGHKK------- 364
H GH IN + P D LL S S D +++W+ T + + + GH+
Sbjct: 110 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169
Query: 365 ---GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFS 421
G +I+S G D LKLW I + ++ + + K I+ + F +FS
Sbjct: 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES----YDYNPNKTNRPFISQKIHFPDFS 225
Query: 422 PLD 424
D
Sbjct: 226 TRD 228
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 418 VNFSPLD-RILISSSGDATIKLWCL---TDYVCLKSLEGHDASVLRCHFINKGTQIVSTG 473
+ F P D +L+S S D ++LW + T +EGH VL + G +I+S G
Sbjct: 120 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 179
Query: 474 ADGLLKLWSIKT 485
D LKLW I +
Sbjct: 180 MDHSLKLWRINS 191
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 315 HKKGHEKDINCVTVSPND-KLLASGSLDKTVKVWS--TTGGLKLLNVLRGHKK------- 364
H GH IN + P D LL S S D +++W+ T + + + GH+
Sbjct: 109 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 168
Query: 365 ---GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFS 421
G +I+S G D LKLW I + ++ + + K I+ + F +FS
Sbjct: 169 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES----YDYNPNKTNRPFISQKIHFPDFS 224
Query: 422 PLD 424
D
Sbjct: 225 TRD 227
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 418 VNFSPLD-RILISSSGDATIKLWCL---TDYVCLKSLEGHDASVLRCHFINKGTQIVSTG 473
+ F P D +L+S S D ++LW + T +EGH VL + G +I+S G
Sbjct: 120 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 179
Query: 474 ADGLLKLWSIKT 485
D LKLW I +
Sbjct: 180 MDHSLKLWRINS 191
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 315 HKKGHEKDINCVTVSPND-KLLASGSLDKTVKVWS--TTGGLKLLNVLRGHKK------- 364
H GH IN + P D LL S S D +++W+ T + + + GH+
Sbjct: 109 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 168
Query: 365 ---GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFS 421
G +I+S G D LKLW I + ++ + + K I+ + F +FS
Sbjct: 169 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES----YDYNPNKTNRPFISQKIHFPDFS 224
Query: 422 PLD 424
D
Sbjct: 225 TRD 227
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 29/121 (23%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSP-NDKLLASGSLDKTVK 345
+LA+GS DKTV +W L+ L + + H+ +I V SP N+ +LAS D+ +
Sbjct: 292 ILATGSADKTVALWD----LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 347
Query: 346 VW-------------STTGGLKLLNVLRGHKKGTQ-----------IVSTGADGLLKLWS 381
VW + G +LL + GH I S D ++++W
Sbjct: 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
Query: 382 I 382
+
Sbjct: 408 M 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 29/121 (23%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSP-NDKLLASGSLDKTVK 345
+LA+GS DKTV +W L+ L + + H+ +I V SP N+ +LAS D+ +
Sbjct: 294 ILATGSADKTVALWD----LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 349
Query: 346 VWSTT-------------GGLKLLNVLRGHKKGTQ-----------IVSTGADGLLKLWS 381
VW + G +LL + GH I S D ++++W
Sbjct: 350 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 409
Query: 382 I 382
+
Sbjct: 410 M 410
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 29/121 (23%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSP-NDKLLASGSLDKTVK 345
+LA+GS DKTV +W L+ L + + H+ +I V SP N+ +LAS D+ +
Sbjct: 288 ILATGSADKTVALWD----LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLN 343
Query: 346 VW-------------STTGGLKLLNVLRGHKKGTQ-----------IVSTGADGLLKLWS 381
VW + G +LL + GH I S D ++++W
Sbjct: 344 VWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
Query: 382 I 382
+
Sbjct: 404 M 404
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSP-NDKLLASGSLDKTVK 345
+LA+GS DKTV +W L+ L + + H+ +I V SP N+ +LAS D+ +
Sbjct: 296 ILATGSADKTVALWD----LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 351
Query: 346 VWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITK 405
VW + K+ G ++ T+ G LL + T+ +S F + + W +
Sbjct: 352 VWDLS---KI-----GEEQSTEDAEDGPPELLFIHGGHTAK-ISDFSWNPNEPWIICSVS 402
Query: 406 DEN 408
++N
Sbjct: 403 EDN 405
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGT----------- 366
GHE+ + V + LL S S D + VW + G + L L GH GT
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-LGTLDGH-TGTIWSIDVDCFTK 87
Query: 367 QIVSTGADGLLKLWSIKTSTCVSTF 391
V+ AD +KLW + CV+T+
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATW 112
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 332 DKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTF 391
+ L GS K +K+ TG + L ++ +K+G + S D +W + T
Sbjct: 14 ENLYFQGSHMKAIKL---TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL 70
Query: 392 DKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKS 449
D H G +W ++ + ++ S D +IKLW +++ C+ +
Sbjct: 71 DGHT-----------------GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 418 VNFSPLDRILISSSGDATIKLWCLTDYVCLKSLEGHDASVLRCHFINKGTQIVSTGADGL 477
V ++ +L S S D++ +W + L +L+GH ++ V+ AD
Sbjct: 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS 97
Query: 478 LKLWSIKTSTCVSTF 492
+KLW + CV+T+
Sbjct: 98 IKLWDVSNGQCVATW 112
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 286 ELLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVK 345
+LL S S D + VW + G +L G GH I + V K +GS D ++K
Sbjct: 45 DLLFSCSKDSSASVWYSLNGERL-----GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 346 VWSTTGG 352
+W + G
Sbjct: 100 LWDVSNG 106
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Query: 375 GLLKLWSI--KTSTCVSTFDK--HALKIWTLAITKDENQIITGGVWFVNFSPLDRILISS 430
G ++LW I K S V+ F K H + TL++ D Q ++GG
Sbjct: 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG---------------- 158
Query: 431 SGDATIKLWCLTDYVCLKSLEGHDASV-LRCHFINKGTQIVSTGADGLLKLWSIKTSTCV 489
D ++K+W L+ LKS H + V K T +S G DG + LW +
Sbjct: 159 -KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217
Query: 490 STFD 493
+ D
Sbjct: 218 TRID 221
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 453 HDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
HD V + GTQ VS G D +K+W + + +++ H+ ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN 185
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 19 SVHCGRDKVLFTWDLSSRKQLRSYPAYESLETCAVFHLSDETESKSGGKTFVLAGGEKSL 78
+V G+D + WDLS + L+SY A+ S C + G T L+ GE
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA--------ACPGKDTIFLSCGEDGR 205
Query: 79 LHYYETSAVK 88
+ ++T K
Sbjct: 206 ILLWDTRKPK 215
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 396 LKIWTLAIT----KDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYVCLKSLE 451
L IW LA K E + + SP ++ S D I +W L + ++ +
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180
Query: 452 GHDASVLRCHFINKGTQIVSTGADGLLKLWSIK 484
GH N GT++ + G D ++ W ++
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 10/156 (6%)
Query: 326 VTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGADGLLKLWSIKTS 385
+ +SP+ K+ S D + VW L+ +GH G + DG KLW+
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGT-KLWTGGLD 204
Query: 386 TCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTDYV 445
V ++D + + + T ++ + + P L + +++ +
Sbjct: 205 NTVRSWDLREGR-------QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257
Query: 446 CLKSLEGHDASVLRCHFINKGTQIVSTGADGLLKLW 481
+ L H++ VL F G VSTG D LL W
Sbjct: 258 KYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 317 KGHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTG 372
+GH +C+ +S + L +G LD TV+ W G + L+ H +QI S G
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ----LQQHDFTSQIFSLG 231
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Query: 288 LASGSLDKTVKVWSTTGGLKLLNVLRGHKKGHEKDINCVTVSPNDKLLASGSLDKTVKVW 347
L +G LD TV+ W G +L + I + P + LA G V+V
Sbjct: 198 LWTGGLDNTVRSWDLREGRQL------QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 348 STTGGLK--------LLNVLRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFD-KHALKI 398
K + L+ G VSTG D LL W +T S F K + +
Sbjct: 252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW--RTPYGASIFQSKESSSV 309
Query: 399 WTLAITKDENQIITG 413
+ I+ D+ I+TG
Sbjct: 310 LSCDISVDDKYIVTG 324
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 31/122 (25%)
Query: 287 LLASGSLDKTVKVWSTTGGLKL-LNVLRGHKKGHEKDINCVTVSP-NDKLLASGSLDKTV 344
+LA+GS DKTV +W LKL L+ HK +I V SP N+ +LAS D+ +
Sbjct: 290 ILATGSADKTVALWDLR-NLKLKLHTFESHK----DEIFQVHWSPHNETILASSGTDRRL 344
Query: 345 KVWSTT-------------GGLKLLNVLRGHKKGTQ-----------IVSTGADGLLKLW 380
VW + G +LL + GH I S D ++++W
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Query: 381 SI 382
+
Sbjct: 405 QM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 287 LLASGSLDKTVKVWSTTGGLKL-LNVLRGHKKGHEKDINCVTVSP-NDKLLASGSLDKTV 344
+LA+GS DKTV +W LKL L+ HK +I V SP N+ +LAS D+ +
Sbjct: 290 ILATGSADKTVALWDLR-NLKLKLHTFESHK----DEIFQVHWSPHNETILASSGTDRRL 344
Query: 345 KVW 347
VW
Sbjct: 345 NVW 347
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 452 GHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
H + V+ F + G + S G DG L+ W +KT ++T + H I
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 347
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 359 LRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIW----TLAITKDENQIITGG 414
L + G + S G DG L+ W +KT ++T + H I LA+ + + + G
Sbjct: 307 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 366
Query: 415 VWFVNF 420
V+ V F
Sbjct: 367 VFDVKF 372
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 452 GHDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIR 500
H + V+ F + G + S G DG L+ W +KT ++T + H I
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 337
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 359 LRGHKKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIW----TLAITKDENQIITGG 414
L + G + S G DG L+ W +KT ++T + H I LA+ + + + G
Sbjct: 297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 356
Query: 415 VWFVNF 420
V+ V F
Sbjct: 357 VFDVKF 362
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 88/246 (35%), Gaps = 83/246 (33%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRGHK-KGHEKDINCVTVSPNDK--LLASGSLDKT 343
+LAS S D+ V +W G + H+ GH+ +N V +P+D +LA GS D
Sbjct: 73 ILASCSYDRKVIIWREENG----TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 344 VKVWSTTGG----LKLLN---------------VLRG----HKKGTQ------IVSTGAD 374
+ + + TG +K +N V+ G H G + S G D
Sbjct: 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188
Query: 375 GLLKLW------------------------------SIKTSTCVS----------TFDKH 394
L+KLW + TST S T D
Sbjct: 189 NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA 248
Query: 395 ALKIWTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLT---DYVCLKSLE 451
+ W+ + N + VW V++S IL S GD + LW + +VC+ +
Sbjct: 249 SSNTWSPKLLHKFNDV----VWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVN 304
Query: 452 GHDASV 457
SV
Sbjct: 305 KGQGSV 310
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 341 DKTVKVWSTTGGLKLLNVLRGHKKGTQIVSTGA-DGLLKLWSIKTSTC-VSTFDKHALKI 398
++ ++ S TG L+ + H +V+TG DG+L +W ++ T VS H ++
Sbjct: 224 NEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEM 283
Query: 399 W 399
W
Sbjct: 284 W 284
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 29 FTWDLSSRKQLRSYPAYESLETCAVFHLSDETESKSGGKTFVLAG 73
F L R LR + E + +F LSD + S SGG V AG
Sbjct: 196 FARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 240
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 365 GTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKIWTLAITKDENQIITGGVWFVNFSPLD 424
GTQ VS D +K+W + +S++ HA ++ +A + ++ + F++ S +
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV------FLSCSEDN 192
Query: 425 RILI 428
RIL+
Sbjct: 193 RILL 196
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 453 HDASVLRCHFINKGTQIVSTGADGLLKLWSIKTSTCVSTFDKHALKI 499
HD V ++ GTQ VS D +K+W + +S++ HA ++
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 170 NEYLNGGDLSGLVKLGANRSHNEWFDKTFERILEAKFKQSSSQQKHN-------TERLGR 222
+EYL G + + ++ W +K F + AK S Q + E +G
Sbjct: 93 DEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGE 152
Query: 223 DELKTVTLLERGKTVKEEDL 242
DEL TL+E G+ +KE D+
Sbjct: 153 DELPAPTLVELGRELKELDV 172
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 36/191 (18%)
Query: 288 LASGSLDKTVKVWSTTGGL-KLLNVLRGHKKGHEKDINCVTVSPN-DKLLASGSLDKTVK 345
LA+ S DKT+K++ G KL++ L GH +G ++ P +LAS S D V
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDW--AHPKFGTILASCSYDGKVL 80
Query: 346 VWSTTGGL-----------KLLNVLR--GHKKGTQIVSTGADGLLKLWSIKTSTCVST-- 390
+W G +N ++ H+ G ++ +DG + + K + S
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 391 FDKHALKI----WTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTD--- 443
D HA+ + W A +++ + N + R ++ D +K+W
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGE--------HNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Query: 444 -YVCLKSLEGH 453
YV +LEGH
Sbjct: 193 TYVLESTLEGH 203
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 318 GHEKDINCVTVSPNDKLLASGSLDKTVKVWSTTGGL-KLLNVLRGH------------KK 364
H + I+ + K LA+ S DKT+K++ G KL++ L GH K
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 365 GTQIVSTGADGLLKLW 380
GT + S DG + +W
Sbjct: 67 GTILASCSYDGKVLIW 82
>pdb|1XAW|A Chain A, Crystal Structure Of The Cytoplasmic Distal C-Terminal
Domain Of Occludin
Length = 140
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 109 RMYAVVTADHNISLYRLNSETGLEERP--NKIL-KFRKQFVGFSDEILDIALLGEEDSHI 165
R Y +T+D LY+ N +TGL+E +L + K+ E+ D EE
Sbjct: 36 REYPPITSDQQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYR---EESEEY 92
Query: 166 VVASNEYLNGGDLSGLVKLGANRSH 190
+ A++EY + G + ++H
Sbjct: 93 MAAADEYNRLKQVKGSADYKSKKNH 117
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 268 GIFVPEAEHGAFYTGGTVELLAS--------GSLDKTVKVWSTTGGLKLLNVLRGHKKGH 319
G +P+A+ +TG +++ S S DKT K+W + + + + + H
Sbjct: 75 GQTIPKAQQ--MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-QAIQIAQ-----H 126
Query: 320 EKDINCV--TVSPNDKLLASGSLDKTVKVWSTTGGLKLL 356
+ + + +PN + +GS DKT+K W T ++
Sbjct: 127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 36/191 (18%)
Query: 288 LASGSLDKTVKVWSTTGGL-KLLNVLRGHKKGHEKDINCVTVSPN-DKLLASGSLDKTVK 345
LA+ S DKT+K++ G KL++ L GH +G ++ P +LAS S D V
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDW--AHPKFGTILASCSYDGKVL 82
Query: 346 VWSTTGGL-----------KLLNVLR--GHKKGTQIVSTGADGLLKLWSIKTSTCVST-- 390
+W G +N ++ H+ G ++ +DG + + K + S
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 391 FDKHALKI----WTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTD--- 443
D HA+ + W A +++ + N + R ++ D +K+W
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEH--------NGTKESRKFVTGGADNLVKIWKYNSDAQ 194
Query: 444 -YVCLKSLEGH 453
YV +LEGH
Sbjct: 195 TYVLESTLEGH 205
>pdb|3JUG|A Chain A, Crystal Structure Of Endo-Beta-1,4-Mannanase From The
Alkaliphilic Bacillus Sp. N16-5
Length = 345
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 54 FHLSDETESKSGGKTFVLAGGEKSLLHYYETS--AVKELYQHGLSSPLVRIVRS------ 105
F++ T + G+ FV+ G Y +T+ A+ + + G ++ +RIV S
Sbjct: 25 FYVDGNTLYDANGQPFVMKGINHGHAWYKDTASTAIPAIAEQGANT--IRIVLSDGGQWE 82
Query: 106 -----SVKRMYAVVTADHNISLYRLNSETGLEERPNKILKFRKQFVGFSDEILDIALLGE 160
+V+ + + + +++ ++ TG + R + + V + E+ D AL+G+
Sbjct: 83 KDDIDTVREVIELAEQNKMVAVVEVHDATGRDSRSD-----LDRAVDYWIEMKD-ALIGK 136
Query: 161 EDSHIVVASNEYLNGGD 177
ED+ I+ +NE+ D
Sbjct: 137 EDTVIINIANEWYGSWD 153
>pdb|2WHJ|A Chain A, Understanding How Diverse Mannanases Recognise
Heterogeneous Substrates
Length = 308
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 52 AVFHLSDETESKSGGKTFVLAGGEKSLLHYYETS--AVKELYQHGLSSPLVRIVRS---- 105
A F++ T + G+ FV+ G Y +T+ A+ + + G ++ +RIV S
Sbjct: 1 AGFYVDGNTLYDANGQPFVMRGINHGHAWYKDTASTAIPAIAEQGANT--IRIVLSDGGQ 58
Query: 106 -------SVKRMYAVVTADHNISLYRLNSETGLEERPNKILKFRKQFVGFSDEILDIALL 158
+++ + + + +++ ++ TG + R + + V + E+ D AL+
Sbjct: 59 WEKDDIDTIREVIELAEQNKMVAVVEVHDATGRDSRSD-----LNRAVDYWIEMKD-ALI 112
Query: 159 GEEDSHIVVASNEYLNGGDLS 179
G+ED+ I+ +NE+ D S
Sbjct: 113 GKEDTVIINIANEWYGSWDGS 133
>pdb|1ZP9|A Chain A, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|B Chain B, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|C Chain C, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|D Chain D, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZTF|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
pdb|1ZTH|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|B Chain B, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|C Chain C, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|D Chain D, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
Length = 258
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 170 NEYLNGGDLSGLVKLGANRSHNEWFDKTFERILEAKFKQSSSQQKHN-------TERLGR 222
+EYL G + ++ W +K F + AK S Q + E +G
Sbjct: 93 DEYLYGDERFDXRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYXKNVLLXEFIGE 152
Query: 223 DELKTVTLLERGKTVKEEDL 242
DEL TL+E G+ +KE D+
Sbjct: 153 DELPAPTLVELGRELKELDV 172
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 198 FERILEAKFKQSSSQQKHNTERLGRDELKTVTLLERGKTVKEEDLFPRQSMEPS-----T 252
E LE K S QQ ERL + LLER +K+EDL P + + P T
Sbjct: 473 LEMRLELFKKASQKQQGPEWERLRK-------LLERPAQLKDEDLAPFEGLIPPKGNLRT 525
Query: 253 LEELEKRKTYHFPLFGIFVPEAEHGAFYTGGTVELLASGSLDKTVKVWSTTGG 305
E KR + + +P A + E++A KTV + + G
Sbjct: 526 AWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSKTVTIATNMAG 578
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 36/191 (18%)
Query: 288 LASGSLDKTVKVWSTTGGL-KLLNVLRGHKKGHEKDINCVTVSPN-DKLLASGSLDKTVK 345
LA+ S DKT+K++ G KL++ L GH +G ++ P +LAS S D V
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDW--AHPKFGTILASCSYDGKVL 80
Query: 346 VWSTTGGL-----------KLLNVLR--GHKKGTQIVSTGADGLLKLWSIKTSTCVST-- 390
+W G +N ++ H+ G ++ +DG + + K + S
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 391 FDKHALKI----WTLAITKDENQIITGGVWFVNFSPLDRILISSSGDATIKLWCLTD--- 443
D HA+ + W A +++ + N + R ++ D +K+W
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEH--------NGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Query: 444 -YVCLKSLEGH 453
YV +LEGH
Sbjct: 193 TYVLESTLEGH 203
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 319 HEKDINCVTVSPN-DKLLASGSLDKTVKVW 347
H+K + V ++P D LA+ S+D+TVK+W
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIW 278
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRG-----HKKGHEKDINCVTVSPNDKLLASGSLD 341
LA+ S+D+TVK+W L +RG + H +N SP+ L +
Sbjct: 265 FLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317
Query: 342 KTVKVWSTT 350
++V+S +
Sbjct: 318 SEIRVYSAS 326
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 319 HEKDINCVTVSPN-DKLLASGSLDKTVKVW 347
H+K + V ++P D LA+ S+D+TVK+W
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIW 278
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRG-----HKKGHEKDINCVTVSPNDKLLASGSLD 341
LA+ S+D+TVK+W L +RG + H +N SP+ L +
Sbjct: 265 FLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317
Query: 342 KTVKVWSTT 350
++V+S +
Sbjct: 318 SEIRVYSAS 326
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 319 HEKDINCVTVSPN-DKLLASGSLDKTVKVW 347
H+K + V ++P D LA+ S+D+TVK+W
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIW 279
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 287 LLASGSLDKTVKVWSTTGGLKLLNVLRG-----HKKGHEKDINCVTVSPNDKLLASGSLD 341
LA+ S+D+TVK+W L +RG + H +N SP+ L +
Sbjct: 266 FLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 318
Query: 342 KTVKVWSTT 350
++V+S +
Sbjct: 319 SEIRVYSAS 327
>pdb|1WPA|A Chain A, 1.5 Angstrom Crystal Structure Of Human Occludin Fragment
413-522
Length = 114
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 109 RMYAVVTADHNISLYRLNSETGLEERP---NKILKFRKQFVGFSDEILDIALLGEEDSHI 165
R Y +T+D LY+ N +TGL+E +++ + K+ E+ D EE
Sbjct: 10 REYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYR---EESEEY 66
Query: 166 VVASNEYLNGGDLSGLVKLGANRSH 190
+ A++EY + G + ++H
Sbjct: 67 MAAADEYNRLKQVKGSADYKSKKNH 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,549,840
Number of Sequences: 62578
Number of extensions: 693018
Number of successful extensions: 2762
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 548
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)