BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10947
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2TRC|G Chain G, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|B Chain B, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|B Chain B, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 68
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 77 DKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAE 132
+KD LK +++ +K + T+ER +SK + R+YVEE DPL+ + NP+ E
Sbjct: 11 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKE 66
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 10 DKDALKKQIENMKYQATMERWPLSKSIQAY 39
+KD LK +++ +K + T+ER +SK + +
Sbjct: 11 EKDKLKMEVDQLKKEVTLERMLVSKCCEEF 40
>pdb|1TBG|E Chain E, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|F Chain F, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|G Chain G, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|H Chain H, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
Length = 68
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 77 DKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAE 132
+KD LK +++ +K + T+ER +SK + R+YVEE DPL+ + NP+ E
Sbjct: 11 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKE 66
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 10 DKDALKKQIENMKYQATMERWPLSKSIQAY 39
+KD LK +++ +K + T+ER +SK + +
Sbjct: 11 EKDKLKMEVDQLKKEVTLERMLVSKCCEEF 40
>pdb|1A0R|G Chain G, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 65
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 77 DKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAE 132
+KD LK +++ +K + T+ER +SK + R+YVEE DPL+ + NP+ E
Sbjct: 10 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKE 65
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 10 DKDALKKQIENMKYQATMERWPLSKSIQAY 39
+KD LK +++ +K + T+ER +SK + +
Sbjct: 10 EKDKLKMEVDQLKKEVTLERMLVSKCCEEF 39
>pdb|1GOT|G Chain G, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 73
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 77 DKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAE 132
+KD LK +++ +K + T+ER +SK + R+YVEE DPL+ + NP+ E
Sbjct: 18 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKE 73
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 10 DKDALKKQIENMKYQATMERWPLSKSIQAY 39
+KD LK +++ +K + T+ER +SK + +
Sbjct: 18 EKDKLKMEVDQLKKEVTLERMLVSKCCEEF 47
>pdb|3AH8|G Chain G, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 78
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 66 GAMDPSVLAAMDKDAL---KKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHA 122
GAMDP +A+ + ++ +K +E +K +A ++R +SK+ + Y E + K DPL+
Sbjct: 1 GAMDPEFMASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTP 60
Query: 123 PDKKNNPWAEK 133
NP+ EK
Sbjct: 61 VPASENPFREK 71
>pdb|1XHM|B Chain B, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
Length = 77
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 82 KKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEKG-KCSIM 139
+K +E +K +A ++R +SK+ + Y E + K DPL+ NP+ EK C+I+
Sbjct: 19 RKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFCAIL 77
>pdb|1GG2|G Chain G, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|G Chain G, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|2BCJ|G Chain G, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 71
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 82 KKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEK 133
+K +E +K +A ++R +SK+ + Y E + K DPL+ NP+ EK
Sbjct: 13 RKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREK 64
>pdb|3V5W|G Chain G, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 77
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 82 KKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEK 133
+K +E +K +A ++R +SK+ + Y E + K DPL+ NP+ EK
Sbjct: 19 RKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREK 70
>pdb|3SN6|G Chain G, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 68
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 82 KKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEK 133
+K +E +K +A ++R +SK+ + Y E + K DPL+ NP+ EK
Sbjct: 13 RKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREK 64
>pdb|1OMW|G Chain G, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|3CIK|G Chain G, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|G Chain G, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|G Chain G, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3PSC|G Chain G, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|G Chain G, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|G Chain G, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|G Chain G, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
Length = 74
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 82 KKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEK 133
+K +E +K +A ++R +SK+ + Y E + K DPL+ NP+ EK
Sbjct: 19 RKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREK 70
>pdb|3UOR|A Chain A, The Structure Of The Sugar-Binding Protein Male From The
Phytopathogen Xanthomonas Citri
pdb|3UOR|B Chain B, The Structure Of The Sugar-Binding Protein Male From The
Phytopathogen Xanthomonas Citri
Length = 458
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 91 QATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNP 129
+ T+ W + K + + E V + EK +P IH D +N P
Sbjct: 29 KTTVRFWAMGKEAEVVAELVADFEKQNPTIHV-DVQNIP 66
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 1 MDPSVLAAMDKDALKKQIENMKYQATMERWPLSKSIQAYLVPTFISHIGTLNSTYGIFKC 60
+ P + A DAL K+IE KY A I Y P + H G L T +
Sbjct: 370 LKPEMSAYEVTDALLKEIEADKYDAI---------ILNYANPDMVGHSGKLEPTIKAVEA 420
Query: 61 IHRSNGAMDPSVLA 74
+ G + ++LA
Sbjct: 421 VDECLGKVVDAILA 434
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
Mutase From Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 1 MDPSVLAAMDKDALKKQIENMKYQATMERWPLSKSIQAYLVPTFISHIGTLNSTYGIFKC 60
+ P + A DAL K+IE KY A I Y P + H G L T +
Sbjct: 370 LKPEMSAYEVTDALLKEIEADKYDAI---------ILNYANPDMVGHSGKLEPTIKAVEA 420
Query: 61 IHRSNGAMDPSVLA 74
+ G + ++LA
Sbjct: 421 VDECLGKVVDAILA 434
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,956,502
Number of Sequences: 62578
Number of extensions: 136400
Number of successful extensions: 483
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 20
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)