Query psy10947
Match_columns 139
No_of_seqs 209 out of 314
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:31:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00224 GGL G protein gamma 99.9 5E-25 1.1E-29 148.5 6.8 61 79-139 2-63 (63)
2 cd00068 GGL G protein gamma su 99.9 9.5E-24 2.1E-28 139.8 6.6 56 79-134 2-57 (57)
3 KOG4119|consensus 99.9 9.8E-24 2.1E-28 146.3 6.1 63 77-139 8-71 (71)
4 PF00631 G-gamma: GGL domain; 99.8 8.1E-20 1.8E-24 123.7 1.6 61 77-139 3-68 (68)
5 KOG4119|consensus 98.8 2.1E-09 4.6E-14 74.8 3.0 37 7-43 5-41 (71)
6 cd00068 GGL G protein gamma su 98.6 1.8E-08 3.9E-13 66.7 2.6 34 11-44 1-34 (57)
7 smart00224 GGL G protein gamma 98.6 2.8E-08 6.1E-13 66.9 2.6 34 11-44 1-34 (63)
8 PF00631 G-gamma: GGL domain; 98.2 1.6E-06 3.4E-11 58.6 2.9 35 9-43 2-36 (68)
9 KOG0722|consensus 65.0 2.4 5.2E-05 36.8 0.3 53 86-138 92-144 (329)
10 PF01976 DUF116: Protein of un 62.1 4.2 9.2E-05 31.7 1.2 50 11-61 95-154 (158)
11 KOG1204|consensus 58.5 30 0.00064 29.5 5.7 70 33-122 161-243 (253)
12 PF09336 Vps4_C: Vps4 C termin 55.7 3.7 7.9E-05 27.4 -0.1 50 44-111 6-56 (62)
13 PF05377 FlaC_arch: Flagella a 47.4 35 0.00077 22.7 3.6 34 76-113 14-47 (55)
14 PF03490 Varsurf_PPLC: Variant 44.2 9.9 0.00021 25.1 0.6 20 40-59 22-42 (51)
15 COG5665 NOT5 CCR4-NOT transcri 44.0 56 0.0012 30.1 5.4 106 6-119 55-187 (548)
16 COG0721 GatC Asp-tRNAAsn/Glu-t 40.7 51 0.0011 23.7 3.9 34 99-133 27-65 (96)
17 PF10398 DUF2443: Protein of u 39.8 22 0.00049 25.3 1.8 30 64-93 37-67 (79)
18 COG5570 Uncharacterized small 35.1 33 0.00071 23.0 2.0 30 45-91 25-55 (57)
19 PF14389 Lzipper-MIP1: Leucine 34.8 1.6E+02 0.0035 20.7 6.3 79 10-96 9-88 (88)
20 PF14071 YlbD_coat: Putative c 31.3 2.1E+02 0.0046 21.9 6.1 47 73-131 74-120 (124)
21 PF04420 CHD5: CHD5-like prote 30.9 1.8E+02 0.004 22.4 5.9 32 77-108 74-105 (161)
22 PF00486 Trans_reg_C: Transcri 30.8 76 0.0016 20.1 3.2 57 29-94 3-59 (77)
23 COG1852 Uncharacterized conser 30.3 21 0.00045 29.7 0.5 13 47-59 187-199 (209)
24 PF11853 DUF3373: Protein of u 29.8 68 0.0015 29.7 3.7 25 77-101 32-56 (489)
25 COG3373 Uncharacterized protei 28.6 92 0.002 23.2 3.6 41 1-41 5-45 (108)
26 cd05505 Bromo_WSTF_like Bromod 28.4 64 0.0014 22.9 2.7 26 101-126 3-28 (97)
27 PF03045 DAN: DAN domain; Int 26.9 19 0.00041 26.8 -0.3 20 44-63 38-57 (121)
28 smart00872 Alpha-mann_mid Alph 25.0 2.2E+02 0.0047 19.0 5.1 61 47-121 2-65 (79)
29 PF06009 Laminin_II: Laminin D 24.5 23 0.0005 26.5 -0.2 26 8-35 89-114 (138)
30 CHL00163 ycf65 putative riboso 23.0 89 0.0019 23.2 2.7 31 86-116 43-80 (99)
31 PF02344 Myc-LZ: Myc leucine z 22.8 56 0.0012 19.7 1.3 16 9-24 8-23 (32)
32 TIGR03755 conj_TIGR03755 integ 22.2 1.2E+02 0.0027 27.6 3.9 42 72-113 353-394 (418)
33 PRK02724 hypothetical protein; 21.2 1E+02 0.0023 23.0 2.7 34 86-119 48-88 (104)
34 PF02831 gpW: gpW; InterPro: 21.1 98 0.0021 21.2 2.4 22 7-28 36-57 (68)
35 TIGR02268 Myxococcus xanthus p 20.9 64 0.0014 28.0 1.8 48 43-97 112-159 (295)
36 PRK02048 4-hydroxy-3-methylbut 20.8 40 0.00086 32.1 0.5 69 43-114 517-608 (611)
37 PF12537 DUF3735: Protein of u 20.5 64 0.0014 21.8 1.4 31 33-65 14-44 (72)
38 KOG0286|consensus 20.4 56 0.0012 29.0 1.3 33 9-41 2-39 (343)
39 COG3937 Uncharacterized conser 20.4 2.4E+02 0.0052 21.2 4.5 23 9-31 39-61 (108)
40 PF04849 HAP1_N: HAP1 N-termin 20.3 1.6E+02 0.0034 25.8 4.0 20 10-29 105-124 (306)
No 1
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=99.91 E-value=5e-25 Score=148.45 Aligned_cols=61 Identities=33% Similarity=0.660 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC-CCCcccC
Q psy10947 79 DALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAE-KGKCSIM 139 (139)
Q Consensus 79 ~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~e-k~~C~il 139 (139)
++++++|+|||.+|+++|||||+||++|++||++|..+||||.|++++.|||++ |++|.+|
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~~~~~DP~l~g~~~~~NP~~~dk~~c~~l 63 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHAEEDPLLTGPPPSKNPFIEDKTSCWIL 63 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCCCCCCCCCcCcC
Confidence 689999999999999999999999999999999999999999999987799999 8899886
No 2
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=99.90 E-value=9.5e-24 Score=139.77 Aligned_cols=56 Identities=39% Similarity=0.731 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCC
Q psy10947 79 DALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEKG 134 (139)
Q Consensus 79 ~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~ek~ 134 (139)
++++++|+|||.+++++|||||+||++|++||++|+++||||.|++..+|||++++
T Consensus 2 ~~~~~~veqLr~el~~~RikvS~a~~~l~~y~e~~~~~Dpll~g~~~~~NP~~~~~ 57 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAENDPLLTGPPSPSNPWIEKK 57 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCc
Confidence 68999999999999999999999999999999999999999999996689999974
No 3
>KOG4119|consensus
Probab=99.89 E-value=9.8e-24 Score=146.26 Aligned_cols=63 Identities=38% Similarity=0.681 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCC-cccC
Q psy10947 77 DKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEKGK-CSIM 139 (139)
Q Consensus 77 ~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~ek~~-C~il 139 (139)
++.++|+.|||||.|++++|++||+|+++|++|||+|+++|||+.|++.+.|||+|+++ |+||
T Consensus 8 ~~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~~~DpLl~gv~~~~NPf~e~K~~Csil 71 (71)
T KOG4119|consen 8 KKPQMKKEVEQLKLEANIERIKVSKAAAELLEYCETHATEDPLLEGVPEKENPFREKKSVCSIL 71 (71)
T ss_pred chHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcCccCccccCCccccCCCcccCCCcccC
Confidence 48999999999999999999999999999999999999999999999999999999655 9986
No 4
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=99.77 E-value=8.1e-20 Score=123.69 Aligned_cols=61 Identities=41% Similarity=0.767 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhhCCCCCCCCCC----CCCCCCCCCC-CCcccC
Q psy10947 77 DKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAP----DKKNNPWAEK-GKCSIM 139 (139)
Q Consensus 77 ~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~----~~~sNPf~ek-~~C~il 139 (139)
.+++++++|++||.|++++|+|||+|+++|++||+ +.+||||.++ ..+.|||+++ +.|.+|
T Consensus 3 ~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~--~~~DPll~~~~~p~~~~~NPw~~~~~~C~il 68 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELERERIKVSKACKELIEYCE--STPDPLLPGPWGPPSSSSNPWIEKDGCCWIL 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH--GTC-HHHHT--SS--GGGSTTCC-STHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc--CCCCceeCCCCCCCCccCCCCcCCCCCeeeC
Confidence 57899999999999999999999999999999999 7799999877 4678999999 558764
No 5
>KOG4119|consensus
Probab=98.84 E-value=2.1e-09 Score=74.77 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=33.6
Q ss_pred cccCHHHHHHHHHhhhhhhccccchHhHHHHHhhccc
Q psy10947 7 AAMDKDALKKQIENMKYQATMERWPLSKSIQAYLVPT 43 (139)
Q Consensus 7 ~~~~~~~~r~~veQLr~Ea~~~R~~VSka~~dl~~~~ 43 (139)
..+++.|+|++|||||.||+++|++||+|++||+...
T Consensus 5 ~~~~~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~ 41 (71)
T KOG4119|consen 5 SNSKKPQMKKEVEQLKLEANIERIKVSKAAAELLEYC 41 (71)
T ss_pred cccchHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence 4456999999999999999999999999999999754
No 6
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=98.64 E-value=1.8e-08 Score=66.66 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhhccccchHhHHHHHhhcccc
Q psy10947 11 KDALKKQIENMKYQATMERWPLSKSIQAYLVPTF 44 (139)
Q Consensus 11 ~~~~r~~veQLr~Ea~~~R~~VSka~~dl~~~~~ 44 (139)
++++|++|||||.|++++|+|||+||++|+..+-
T Consensus 1 ~~~~~~~veqLr~el~~~RikvS~a~~~l~~y~e 34 (57)
T cd00068 1 VDQLKKEVEQLRKELSRERLKVSKAAAELLKYCE 34 (57)
T ss_pred CHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHH
Confidence 3689999999999999999999999999998753
No 7
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=98.59 E-value=2.8e-08 Score=66.92 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhhccccchHhHHHHHhhcccc
Q psy10947 11 KDALKKQIENMKYQATMERWPLSKSIQAYLVPTF 44 (139)
Q Consensus 11 ~~~~r~~veQLr~Ea~~~R~~VSka~~dl~~~~~ 44 (139)
++++|++|||||.|++++|+|||+|+++|+..+-
T Consensus 1 ~~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e 34 (63)
T smart00224 1 KDQLRKEVEQLRKELSRERIKVSKAAEELLAYCE 34 (63)
T ss_pred ChHHHHHHHHHHHHHCCceehHHHHHHHHHHHHH
Confidence 3789999999999999999999999999998753
No 8
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=98.16 E-value=1.6e-06 Score=58.59 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHhhhhhhccccchHhHHHHHhhccc
Q psy10947 9 MDKDALKKQIENMKYQATMERWPLSKSIQAYLVPT 43 (139)
Q Consensus 9 ~~~~~~r~~veQLr~Ea~~~R~~VSka~~dl~~~~ 43 (139)
..+++++++|++||.|++.+|++||+|+++|+...
T Consensus 2 ~~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~ 36 (68)
T PF00631_consen 2 QEKDQLKREIEQLRQELERERIKVSKACKELIEYC 36 (68)
T ss_dssp THHHHHHHHHHHHHHHHTS----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHh
Confidence 35789999999999999999999999999999875
No 9
>KOG0722|consensus
Probab=64.95 E-value=2.4 Score=36.80 Aligned_cols=53 Identities=8% Similarity=-0.067 Sum_probs=47.8
Q ss_pred HHHHHHhccCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCccc
Q psy10947 86 ENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCSI 138 (139)
Q Consensus 86 eqLr~el~~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~ek~~C~i 138 (139)
.++-.-++-+-.+++.++..+..||.++..-|.++.|++-..|||+..++|..
T Consensus 92 t~ydyaldhpd~~fynyyqyyr~r~apkvd~raviVGvl~i~s~Fqyls~~ar 144 (329)
T KOG0722|consen 92 TQYDYALDHPDEVFYNYYQYYRARYAPKVDPRAVIVGVLVILSAFQYLSNVAR 144 (329)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHHhccccCCcEEEEeehhhhhHHHHHHHHHH
Confidence 46777788899999999999999999999999999999988999999988863
No 10
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=62.12 E-value=4.2 Score=31.70 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhhhhcc----ccchHhHHHHHhhc---cc---cccCCCcccccchhhhhh
Q psy10947 11 KDALKKQIENMKYQATM----ERWPLSKSIQAYLV---PT---FISHIGTLNSTYGIFKCI 61 (139)
Q Consensus 11 ~~~~r~~veQLr~Ea~~----~R~~VSka~~dl~~---~~---~~~~pG~vntt~~i~k~~ 61 (139)
=.-+|+.+.+.|.++=+ +| -+.+...++-. |. +...|||+||++|+++..
T Consensus 95 gt~ar~~ik~~~p~~iigVAC~~-dL~~g~~~~~~~~ip~~gV~l~~~gC~~T~Vd~~~v~ 154 (158)
T PF01976_consen 95 GTLARKIIKEYRPKAIIGVACER-DLISGIQDLKPLGIPVQGVLLDRPGCINTDVDWEKVE 154 (158)
T ss_pred hHHHHHHHHHhCCCEEEEEechH-HHHHHHHHHhhcCCCeeEEEeCCCCcCCCcccHHHHH
Confidence 34577888888877533 33 34455555544 33 567899999999998843
No 11
>KOG1204|consensus
Probab=58.52 E-value=30 Score=29.55 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=48.2
Q ss_pred hHHHHHhhccccc-----------cCCCccccc--chhhhhhhccCCCCChhhhhhcCHHHHHHHHHHHHHHhccCcchh
Q psy10947 33 SKSIQAYLVPTFI-----------SHIGTLNST--YGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQATMERWPL 99 (139)
Q Consensus 33 Ska~~dl~~~~~~-----------~~pG~vntt--~~i~k~~r~~~~~~~~~~m~~~~~~~lkk~VeqLr~el~~~RiKV 99 (139)
||||-++..-++. -.||.|+|- ++|+. ...|+| +. +..+|.-....++.-
T Consensus 161 ~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~-----~~~~~p--------~~----l~~f~el~~~~~ll~ 223 (253)
T KOG1204|consen 161 SKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRE-----TSRMTP--------AD----LKMFKELKESGQLLD 223 (253)
T ss_pred hHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhh-----ccCCCH--------HH----HHHHHHHHhcCCcCC
Confidence 5677766654443 369999998 66665 334555 22 234566667789999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCC
Q psy10947 100 SKSIQAMREYVEENEKNDPLIHA 122 (139)
Q Consensus 100 S~aa~~Li~Yceq~~~~DPLL~g 122 (139)
+++.+..+.....+. + |++|
T Consensus 224 ~~~~a~~l~~L~e~~--~-f~sG 243 (253)
T KOG1204|consen 224 PQVTAKVLAKLLEKG--D-FVSG 243 (253)
T ss_pred hhhHHHHHHHHHHhc--C-cccc
Confidence 999999999988874 3 7766
No 12
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=55.74 E-value=3.7 Score=27.37 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=29.6
Q ss_pred cccCCCccccc-chhhhhhhccCCCCChhhhhhcCHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Q psy10947 44 FISHIGTLNST-YGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQATMERWPLSKSIQAMREYVE 111 (139)
Q Consensus 44 ~~~~pG~vntt-~~i~k~~r~~~~~~~~~~m~~~~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yce 111 (139)
--+-||++.++ +||.. . ... ....+.+. .+..+.|++-|++.++|.+|-+
T Consensus 6 s~~dp~a~~m~~~di~~-----~-~l~---~p~it~~D---------F~~Al~~~kpSVs~~dl~~ye~ 56 (62)
T PF09336_consen 6 SPSDPGAVEMSLMDIPA-----E-KLK---EPPITMED---------FEEALKKVKPSVSQEDLKKYEE 56 (62)
T ss_dssp SSSSTTEEEEEGTGS-G-----G-GB----HHHBCHHH---------HHHHHHTCGGSS-HHHHHHHHH
T ss_pred CCCCccchhccHhhcCc-----c-ccc---CCCCCHHH---------HHHHHHHcCCCCCHHHHHHHHH
Confidence 34689999999 99886 0 000 00123333 3445667888888889888854
No 13
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.37 E-value=35 Score=22.71 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=26.6
Q ss_pred cCHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhh
Q psy10947 76 MDKDALKKQIENMKYQATMERWPLSKSIQAMREYVEEN 113 (139)
Q Consensus 76 ~~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~ 113 (139)
..++.+|++++++|.++. ++-+...+|+.-+|.=
T Consensus 14 ~~i~tvk~en~~i~~~ve----~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 14 SSINTVKKENEEISESVE----KIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 357889999999998886 5667778888888753
No 14
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=44.19 E-value=9.9 Score=25.10 Aligned_cols=20 Identities=40% Similarity=0.468 Sum_probs=17.5
Q ss_pred hccccccCCCccccc-chhhh
Q psy10947 40 LVPTFISHIGTLNST-YGIFK 59 (139)
Q Consensus 40 ~~~~~~~~pG~vntt-~~i~k 59 (139)
|+-|-+.-||..|+. |+|.|
T Consensus 22 ~~I~ql~ipGsHns~tygI~~ 42 (51)
T PF03490_consen 22 MAITQLFIPGSHNSGTYGIHK 42 (51)
T ss_pred ceeeeEEeccccccccccccc
Confidence 456788899999999 99998
No 15
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=44.02 E-value=56 Score=30.08 Aligned_cols=106 Identities=22% Similarity=0.283 Sum_probs=63.7
Q ss_pred hcccCHHHHHHHHHhhh-hhhccccchHhHHHHHhhccccccCCCccccc-chhhhhhhccCCCCChhhhhhcCHHHHHH
Q psy10947 6 LAAMDKDALKKQIENMK-YQATMERWPLSKSIQAYLVPTFISHIGTLNST-YGIFKCIHRSNGAMDPSVLAAMDKDALKK 83 (139)
Q Consensus 6 ~~~~~~~~~r~~veQLr-~Ea~~~R~~VSka~~dl~~~~~~~~pG~vntt-~~i~k~~r~~~~~~~~~~m~~~~~~~lkk 83 (139)
++..|+-.-+...++-| .|++|||. ||.+.+|-..-.|.-|.-|.- +|.+-.-.+ +.+ .....-++.|++
T Consensus 55 ~s~~dikdk~~l~~nrrlie~~me~f---k~ve~~mk~k~fske~ls~~~~~dpke~~k~--d~i---~~i~~~~~el~~ 126 (548)
T COG5665 55 LSKEDVKDKQVLMTNRRLIENGMERF---KSVEKLMKTKQFSKEALTNPDIIDPKELKKR--DQV---LFIHDCLDELQK 126 (548)
T ss_pred hcccccchHHHHHHhHHHHHhHHHHH---HHHHHHHHHHHhhHhhccCcccCChhHhccc--cce---ehHHHHHHHHHH
Confidence 34444444444455544 58999995 688888888888999999988 998863333 222 111223566666
Q ss_pred HHHHHHHHhcc-----------------Ccc--------hhHHHHHHHHHHHHhhCCCCCC
Q psy10947 84 QIENMKYQATM-----------------ERW--------PLSKSIQAMREYVEENEKNDPL 119 (139)
Q Consensus 84 ~VeqLr~el~~-----------------~Ri--------KVS~aa~~Li~Yceq~~~~DPL 119 (139)
+.|+.-.|-.- .|. .|-.--++++.|+|-+...|..
T Consensus 127 q~e~~ea~e~e~~~erh~~h~~~le~i~~~l~n~~~~pe~v~~~q~di~yyve~~~~~df~ 187 (548)
T COG5665 127 QLEQYEAQENEEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFI 187 (548)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHhhcCCCcchh
Confidence 65555433221 111 2555566788888877655543
No 16
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=40.69 E-value=51 Score=23.69 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhhCCCC-----CCCCCCCCCCCCCCCC
Q psy10947 99 LSKSIQAMREYVEENEKND-----PLIHAPDKKNNPWAEK 133 (139)
Q Consensus 99 VS~aa~~Li~Yceq~~~~D-----PLL~g~~~~sNPf~ek 133 (139)
+..-.++++.|.+|-..-| |+.++... +|++++-
T Consensus 27 ~~~~l~~Il~~veql~evD~~~vep~~~~~~~-~~~lReD 65 (96)
T COG0721 27 FATQLEDILGYVEQLNEVDTEGVEPTTHPLEV-SNVLRED 65 (96)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCcccccccc-cccccCC
Confidence 5556677999999988877 66666655 6899864
No 17
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=39.82 E-value=22 Score=25.29 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.0
Q ss_pred cCCCCC-hhhhhhcCHHHHHHHHHHHHHHhc
Q psy10947 64 SNGAMD-PSVLAAMDKDALKKQIENMKYQAT 93 (139)
Q Consensus 64 ~~~~~~-~~~m~~~~~~~lkk~VeqLr~el~ 93 (139)
|+|+++ |+........|+-.+|+.||.+.+
T Consensus 37 KRGS~DmPe~l~~~~~~QideeV~~LKe~Id 67 (79)
T PF10398_consen 37 KRGSQDMPEHLNMAFLAQIDEEVEKLKEHID 67 (79)
T ss_dssp HTTSS---TTS-HHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcCcccccHHHHHHHHHHHHHHHHHHH
Confidence 457777 778888888999999999998764
No 18
>COG5570 Uncharacterized small protein [Function unknown]
Probab=35.10 E-value=33 Score=23.03 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=23.1
Q ss_pred ccCCCccccc-chhhhhhhccCCCCChhhhhhcCHHHHHHHHHHHHHH
Q psy10947 45 ISHIGTLNST-YGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQ 91 (139)
Q Consensus 45 ~~~pG~vntt-~~i~k~~r~~~~~~~~~~m~~~~~~~lkk~VeqLr~e 91 (139)
.++|||=++. ..++| ..-.+|.+||.||.+
T Consensus 25 ~n~Ps~dd~~i~eLKR-----------------rKL~lKeeIEkLka~ 55 (57)
T COG5570 25 MNSPSSDDLAIRELKR-----------------RKLRLKEEIEKLKAQ 55 (57)
T ss_pred hcCCCcchHHHHHHHH-----------------HHHHHHHHHHHHhcc
Confidence 3789998888 77777 356788889988864
No 19
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=34.84 E-value=1.6e+02 Score=20.67 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhhhhhhccccchHhHHHHHhhccccccCCCccccc-chhhhhhhccCCCCChhhhhhcCHHHHHHHHHHH
Q psy10947 10 DKDALKKQIENMKYQATMERWPLSKSIQAYLVPTFISHIGTLNST-YGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENM 88 (139)
Q Consensus 10 ~~~~~r~~veQLr~Ea~~~R~~VSka~~dl~~~~~~~~pG~vntt-~~i~k~~r~~~~~~~~~~m~~~~~~~lkk~VeqL 88 (139)
-...+...|.+|+.+..-++ .|-.+-...+.+..-++|+...++ --++....- . ++-+.++-.+...|..|
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~-~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~E------I-A~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQ-DLRRALEKALGRSSGSLPSSPSSLPKKAKELLEE------I-ALLEAEVAKLEQKVLSL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcccCCccccCChHHHHHHHH------H-HHHHHHHHHHHHHHHHH
Confidence 35678888999998888776 666666666665443333322222 222221111 1 55566777888888888
Q ss_pred HHHhccCc
Q psy10947 89 KYQATMER 96 (139)
Q Consensus 89 r~el~~~R 96 (139)
+.++.-+|
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 88776543
No 20
>PF14071 YlbD_coat: Putative coat protein
Probab=31.26 E-value=2.1e+02 Score=21.90 Aligned_cols=47 Identities=15% Similarity=0.358 Sum_probs=28.1
Q ss_pred hhhcCHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCC
Q psy10947 73 LAAMDKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWA 131 (139)
Q Consensus 73 m~~~~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~ 131 (139)
+.++++++|..++. .||+|...+...+.|....=.=-. .....|||-
T Consensus 74 vKkmD~nq~q~hl~-----------~~sqai~~vQ~~l~qFq~~~~~~~-~~~~~~PFs 120 (124)
T PF14071_consen 74 VKKMDVNQMQKHLN-----------NVSQAIGSVQQVLSQFQGNGQKQS-QRSPEHPFS 120 (124)
T ss_pred HHHCCHHHHHHHHH-----------HHHHHHHHHHHHHHHhcCCCCCCC-CCCCCCCCc
Confidence 34456666655555 578888888888887753222211 223468885
No 21
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.94 E-value=1.8e+02 Score=22.37 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Q psy10947 77 DKDALKKQIENMKYQATMERWPLSKSIQAMRE 108 (139)
Q Consensus 77 ~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~ 108 (139)
.++.+.++++.++.+..-.|.+++....-++-
T Consensus 74 k~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~ 105 (161)
T PF04420_consen 74 KLDKLEEELEKLNKSLSSEKSSFDKSLSKVLW 105 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999998887776554
No 22
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=30.82 E-value=76 Score=20.14 Aligned_cols=57 Identities=11% Similarity=0.150 Sum_probs=41.0
Q ss_pred cchHhHHHHHhhccccccCCCcccccchhhhhhhccCCCCChhhhhhcCHHHHHHHHHHHHHHhcc
Q psy10947 29 RWPLSKSIQAYLVPTFISHIGTLNSTYGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQATM 94 (139)
Q Consensus 29 R~~VSka~~dl~~~~~~~~pG~vntt~~i~k~~r~~~~~~~~~~m~~~~~~~lkk~VeqLr~el~~ 94 (139)
+++++..-.+|+. .|+.|||-+=+.-+|-...|...... +-..+...|-.||..+..
T Consensus 3 ~v~Lt~~e~~lL~-~L~~~~~~~vs~~~l~~~~w~~~~~~--------~~~~l~~~I~rLR~kL~~ 59 (77)
T PF00486_consen 3 PVKLTPKEFRLLE-LLLRNPGRVVSREELIEALWGDEEDV--------SDNSLDVHISRLRKKLED 59 (77)
T ss_dssp EEESSHHHHHHHH-HHHHTTTSEEEHHHHHHHHTSSSSTT--------CTHHHHHHHHHHHHHHHS
T ss_pred EEecCHHHHHHHH-HHHhCCCCCCCHHHhCChhhhccccc--------chhhHHHHHHHHHHHHhh
Confidence 4566666777776 67888998877777888888744312 346788888888887765
No 23
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=30.30 E-value=21 Score=29.67 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=11.2
Q ss_pred CCCcccccchhhh
Q psy10947 47 HIGTLNSTYGIFK 59 (139)
Q Consensus 47 ~pG~vntt~~i~k 59 (139)
.-||+||++|.++
T Consensus 187 ~dGCinT~Vdve~ 199 (209)
T COG1852 187 RDGCINTEVDVEE 199 (209)
T ss_pred cCCccCcEeeHHH
Confidence 4599999999887
No 24
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.80 E-value=68 Score=29.73 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHhccCcchhHH
Q psy10947 77 DKDALKKQIENMKYQATMERWPLSK 101 (139)
Q Consensus 77 ~~~~lkk~VeqLr~el~~~RiKVS~ 101 (139)
++++|++++++|+.+..--.-+|++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 6899999999999998744334444
No 25
>COG3373 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.60 E-value=92 Score=23.22 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=37.2
Q ss_pred CChhhhcccCHHHHHHHHHhhhhhhccccchHhHHHHHhhc
Q psy10947 1 MDPSVLAAMDKDALKKQIENMKYQATMERWPLSKSIQAYLV 41 (139)
Q Consensus 1 ~~~~~~~~~~~~~~r~~veQLr~Ea~~~R~~VSka~~dl~~ 41 (139)
+||-+|.+-|.+.+|+.+-++-.+.---|+-+|+-+...-+
T Consensus 5 IDp~ilRSLnrSeLRrkiL~yLy~iYP~~~YLSEIsR~V~S 45 (108)
T COG3373 5 IDPNILRSLNRSELRRKILFYLYSIYPYRSYLSEISRAVKS 45 (108)
T ss_pred cChHHHHHhhHHHHHHHHHHHHHHHccchhHHHHHHHHHcC
Confidence 59999999999999999999999999999999988776654
No 26
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.37 E-value=64 Score=22.87 Aligned_cols=26 Identities=4% Similarity=-0.001 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCC
Q psy10947 101 KSIQAMREYVEENEKNDPLIHAPDKK 126 (139)
Q Consensus 101 ~aa~~Li~Yceq~~~~DPLL~g~~~~ 126 (139)
++|.++++-+.++....||+.++.+.
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~ 28 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTAD 28 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChh
Confidence 57888999999999899999887653
No 27
>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular. Therefore the cysteines may form disulphide bridges. This family of proteins has been termed the DAN family [] after the first member to be reported. This family includes DAN, Cerberus and Gremlin. The gremlin protein is an antagonist of bone morphogenetic protein signalling. It is postulated that all members of this family antagonize different TGF beta TGF-beta ligands [].
Probab=26.92 E-value=19 Score=26.81 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=17.1
Q ss_pred cccCCCcccccchhhhhhhc
Q psy10947 44 FISHIGTLNSTYGIFKCIHR 63 (139)
Q Consensus 44 ~~~~pG~vntt~~i~k~~r~ 63 (139)
.|+||||...||.-+-|+-.
T Consensus 38 ~I~~~GC~s~~I~N~~C~Gq 57 (121)
T PF03045_consen 38 VISHPGCESVTIQNNFCFGQ 57 (121)
T ss_pred EECcCCceEEEEEeeeeEEE
Confidence 58999999999988887765
No 28
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=25.00 E-value=2.2e+02 Score=18.98 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCCcccccchhhhhhhccCCCCChhhhhhcCHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHhhCCCCCCCC
Q psy10947 47 HIGTLNSTYGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQATM---ERWPLSKSIQAMREYVEENEKNDPLIH 121 (139)
Q Consensus 47 ~pG~vntt~~i~k~~r~~~~~~~~~~m~~~~~~~lkk~VeqLr~el~~---~RiKVS~aa~~Li~Yceq~~~~DPLL~ 121 (139)
|+||-.|-.+||+..|. .+.+-..+|++=.-+.. ....-++..+.+-+..-.+..||-+=+
T Consensus 2 h~G~~Tsr~~~K~~~r~--------------~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~G 65 (79)
T smart00872 2 HRGTYTSRPYLKRLNRR--------------LESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITG 65 (79)
T ss_pred CCceecCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCc
Confidence 78988777999997776 34444444444322211 112234566677777777778887653
No 29
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=24.47 E-value=23 Score=26.54 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=0.7
Q ss_pred ccCHHHHHHHHHhhhhhhccccchHhHH
Q psy10947 8 AMDKDALKKQIENMKYQATMERWPLSKS 35 (139)
Q Consensus 8 ~~~~~~~r~~veQLr~Ea~~~R~~VSka 35 (139)
+.+++++|..++|=|..|+ ||+|+-.
T Consensus 89 s~nI~~IrelI~qAR~~An--~IkV~m~ 114 (138)
T PF06009_consen 89 SRNISRIRELIAQARDAAN--RIKVSMK 114 (138)
T ss_dssp -------------------------B--
T ss_pred HHHHHHHHHHHHHHHHHHh--heeeeeE
Confidence 5688999999999999987 7887643
No 30
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=22.99 E-value=89 Score=23.17 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHHh-------ccCcchhHHHHHHHHHHHHhhCCC
Q psy10947 86 ENMKYQA-------TMERWPLSKSIQAMREYVEENEKN 116 (139)
Q Consensus 86 eqLr~el-------~~~RiKVS~aa~~Li~Yceq~~~~ 116 (139)
|+||.+| ..+||.+---+.++|+|-+++...
T Consensus 43 e~LK~~LesK~WIs~~~~i~lLN~~TeiIN~Wqe~~~~ 80 (99)
T CHL00163 43 ELLKLELESKPWISEDERIEILNKTTEIINYWQENKKK 80 (99)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3555555 456888888999999999997654
No 31
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=22.78 E-value=56 Score=19.68 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=11.6
Q ss_pred cCHHHHHHHHHhhhhh
Q psy10947 9 MDKDALKKQIENMKYQ 24 (139)
Q Consensus 9 ~~~~~~r~~veQLr~E 24 (139)
+.++++|+.-|||+.-
T Consensus 8 sekeqLrrr~eqLK~k 23 (32)
T PF02344_consen 8 SEKEQLRRRREQLKHK 23 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578888888888753
No 32
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=22.18 E-value=1.2e+02 Score=27.56 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=35.6
Q ss_pred hhhhcCHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhh
Q psy10947 72 VLAAMDKDALKKQIENMKYQATMERWPLSKSIQAMREYVEEN 113 (139)
Q Consensus 72 ~m~~~~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~ 113 (139)
++....++.|-++|++|+.|++++|--.+.++-.|++-=.+.
T Consensus 353 ~~~~~~i~~LDrEI~~Lk~E~~lRk~l~~nT~~~il~r~~~r 394 (418)
T TIGR03755 353 QEVDKAIDKLDREINNLKTELELRKELASNTALTILQRHHAR 394 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhH
Confidence 344556899999999999999999999999999988876555
No 33
>PRK02724 hypothetical protein; Provisional
Probab=21.19 E-value=1e+02 Score=23.04 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=24.2
Q ss_pred HHHHHHhc-------cCcchhHHHHHHHHHHHHhhCCCCCC
Q psy10947 86 ENMKYQAT-------MERWPLSKSIQAMREYVEENEKNDPL 119 (139)
Q Consensus 86 eqLr~el~-------~~RiKVS~aa~~Li~Yceq~~~~DPL 119 (139)
|+||.+|+ .+||.+---+.++|+|-++.....++
T Consensus 48 e~LK~~LesK~WIs~~~~i~lLN~~TeiIN~WQe~~~~~~~ 88 (104)
T PRK02724 48 EQLKTELESKHWITENERVEVLNKATEVINYWQEEGKGKPL 88 (104)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHccCCCCh
Confidence 35555553 45788888999999999986544443
No 34
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=21.14 E-value=98 Score=21.20 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.9
Q ss_pred cccCHHHHHHHHHhhhhhhccc
Q psy10947 7 AAMDKDALKKQIENMKYQATME 28 (139)
Q Consensus 7 ~~~~~~~~r~~veQLr~Ea~~~ 28 (139)
...|+.+|+..+.+|+.+.++.
T Consensus 36 t~a~i~~L~~yI~~L~~~Lg~~ 57 (68)
T PF02831_consen 36 TQANIGDLRAYIQQLEAQLGIV 57 (68)
T ss_dssp EGGGHHHHHHHHHHHHHHTTST
T ss_pred ecCCHHHHHHHHHHHHHHhCcC
Confidence 5679999999999999998886
No 35
>TIGR02268 Myxococcus xanthus paralogous family TIGR02268. This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=20.90 E-value=64 Score=28.02 Aligned_cols=48 Identities=4% Similarity=0.046 Sum_probs=33.8
Q ss_pred ccccCCCcccccchhhhhhhccCCCCChhhhhhcCHHHHHHHHHHHHHHhccCcc
Q psy10947 43 TFISHIGTLNSTYGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQATMERW 97 (139)
Q Consensus 43 ~~~~~pG~vntt~~i~k~~r~~~~~~~~~~m~~~~~~~lkk~VeqLr~el~~~Ri 97 (139)
.+.-||+-+++.||..| +.... ......+..++.++++|+.|+++-|-
T Consensus 112 ~LV~~p~~vD~~VeV~R-----~~~t~--es~~~E~~~~r~~~~~~~~e~~~lr~ 159 (295)
T TIGR02268 112 ELVTDPARVERQVEVRR-----HARTA--ASYQQEVVELRARNQLLEEENARLRR 159 (295)
T ss_pred EEEeCCcccceEEEEEc-----CCCcc--ccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 36789999999999998 22221 11133456788888888888887774
No 36
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=20.78 E-value=40 Score=32.09 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=49.4
Q ss_pred ccccCCCcccccchhhhhhhc--------c-----------CCCCChhhhhhcCHHHH---HHHHHHH-HHHhccCcchh
Q psy10947 43 TFISHIGTLNSTYGIFKCIHR--------S-----------NGAMDPSVLAAMDKDAL---KKQIENM-KYQATMERWPL 99 (139)
Q Consensus 43 ~~~~~pG~vntt~~i~k~~r~--------~-----------~~~~~~~~m~~~~~~~l---kk~VeqL-r~el~~~RiKV 99 (139)
-|||.|||=-|++|+..-.-+ | |||- .|+..+.-.. ...|..+ .+|.-...|+-
T Consensus 517 EyISCPsCGRTLfDLq~tta~Ik~~t~HLkGlkI~IMGCIVNGPG---EMADADfGYVG~gpgkI~LY~gke~V~~nIp~ 593 (611)
T PRK02048 517 EYISCPGCGRTLYDLQSTIARIKEATSHLKGLKIGIMGCIVNGPG---EMADADYGYVGAGRGKISLYKQKECVEKNIPE 593 (611)
T ss_pred eEEECCCCCcchhhHHHHHHHHHHHhCCCCCceEEEEEeEecCCc---hhhhcccceecCCCCeEEEEeccEEEecCCCH
Confidence 499999999999999876544 2 5444 7777776443 3334444 34555556899
Q ss_pred HHHHHHHHHHHHhhC
Q psy10947 100 SKSIQAMREYVEENE 114 (139)
Q Consensus 100 S~aa~~Li~Yceq~~ 114 (139)
.+|++.|++-+.+|.
T Consensus 594 e~Avd~Li~LIk~~g 608 (611)
T PRK02048 594 EEAVERLIELIKANG 608 (611)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998875
No 37
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=20.49 E-value=64 Score=21.79 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=21.0
Q ss_pred hHHHHHhhccccccCCCcccccchhhhhhhccC
Q psy10947 33 SKSIQAYLVPTFISHIGTLNSTYGIFKCIHRSN 65 (139)
Q Consensus 33 Ska~~dl~~~~~~~~pG~vntt~~i~k~~r~~~ 65 (139)
|...--+|+ +.|--|+|||.|..+.-++++.
T Consensus 14 ~ViGVt~mA--iLSG~gaVstpy~~~~~~~~~v 44 (72)
T PF12537_consen 14 GVIGVTLMA--ILSGFGAVSTPYYYFSYFRRPV 44 (72)
T ss_pred HHHHHHHHH--HHhhhhHHccHHHHHHHHHhcC
Confidence 333334444 5788999999988777666644
No 38
>KOG0286|consensus
Probab=20.40 E-value=56 Score=28.96 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=24.5
Q ss_pred cCHHHHHHHHHhhhhhhccccch-----HhHHHHHhhc
Q psy10947 9 MDKDALKKQIENMKYQATMERWP-----LSKSIQAYLV 41 (139)
Q Consensus 9 ~~~~~~r~~veQLr~Ea~~~R~~-----VSka~~dl~~ 41 (139)
..+++||.+.||||.+..-+|.+ +.+.++.|-+
T Consensus 2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~ 39 (343)
T KOG0286|consen 2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLES 39 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhcccc
Confidence 46789999999999999888865 3445554443
No 39
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.38 E-value=2.4e+02 Score=21.22 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHhhhhhhccccch
Q psy10947 9 MDKDALKKQIENMKYQATMERWP 31 (139)
Q Consensus 9 ~~~~~~r~~veQLr~Ea~~~R~~ 31 (139)
.|.+++|+.|+-|-.|+...+--
T Consensus 39 ln~eEak~~vddl~~q~k~~~~e 61 (108)
T COG3937 39 LNAEEAKRFVDDLLRQAKEAQGE 61 (108)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhh
Confidence 57889999999999888866543
No 40
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.28 E-value=1.6e+02 Score=25.79 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.3
Q ss_pred CHHHHHHHHHhhhhhhcccc
Q psy10947 10 DKDALKKQIENMKYQATMER 29 (139)
Q Consensus 10 ~~~~~r~~veQLr~Ea~~~R 29 (139)
.+.....+|.|||.|+++..
T Consensus 105 ~L~~~~e~v~qLrHeL~~kd 124 (306)
T PF04849_consen 105 QLGAALEQVEQLRHELSMKD 124 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999998765
Done!