Query psy10947
Match_columns 139
No_of_seqs 209 out of 314
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:32:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5w_G G gamma-I, guanine nucl 99.9 3.3E-27 1.1E-31 164.7 6.1 64 76-139 13-77 (77)
2 1got_G GT-gamma; complex (GTP- 99.9 5.8E-24 2E-28 146.8 3.2 56 77-132 18-73 (73)
3 2pbi_A Regulator of G-protein 99.7 1.8E-18 6.1E-23 150.3 2.0 105 19-133 166-275 (424)
4 3v5w_G G gamma-I, guanine nucl 99.2 9.1E-12 3.1E-16 86.8 3.7 38 7-44 11-48 (77)
5 1got_G GT-gamma; complex (GTP- 99.0 2.3E-10 8E-15 78.7 3.2 35 9-43 17-51 (73)
6 2pbi_A Regulator of G-protein 97.5 5.8E-05 2E-09 65.6 3.4 35 9-43 219-253 (424)
7 1zke_A Hypothetical protein HP 40.1 19 0.00063 24.9 2.5 30 64-93 39-69 (83)
8 2pih_A Protein YMCA; regulate 37.4 18 0.00062 26.5 2.3 24 115-139 121-144 (151)
9 3cl3_D NF-kappa-B essential mo 32.6 20 0.00069 26.7 1.8 26 9-34 55-80 (130)
10 3i00_A HIP-I, huntingtin-inter 32.4 43 0.0015 24.1 3.6 33 77-109 16-48 (120)
11 1go4_E MAD1 (mitotic arrest de 32.0 34 0.0011 24.3 2.8 34 7-40 10-43 (100)
12 3kfu_G Glutamyl-tRNA(Gln) amid 29.8 77 0.0026 21.3 4.3 32 100-133 31-62 (92)
13 3hme_A Bromodomain-containing 29.7 75 0.0026 22.1 4.4 37 93-129 8-44 (123)
14 1deb_A APC protein, adenomatou 28.0 50 0.0017 21.0 2.8 30 8-37 2-31 (54)
15 2yy0_A C-MYC-binding protein; 26.7 30 0.001 21.6 1.6 18 77-94 20-37 (53)
16 2p2e_A Putative Fe-S biosynthe 26.5 14 0.00047 26.6 0.0 40 97-138 5-45 (128)
17 3l32_A Phosphoprotein; antipar 26.0 41 0.0014 20.8 2.1 15 99-113 30-44 (45)
18 2fok_A R.FOKI, FOKI restrictio 25.3 25 0.00085 31.8 1.4 28 99-132 479-506 (579)
19 2kk6_A Proto-oncogene tyrosine 25.2 74 0.0025 21.9 3.7 28 101-131 81-116 (116)
20 3ip4_C Aspartyl/glutamyl-tRNA( 23.2 1E+02 0.0034 21.0 4.0 33 100-133 29-66 (100)
21 3ffm_A Growth arrest and DNA-d 21.6 34 0.0012 26.4 1.4 21 100-120 140-160 (167)
22 1dx0_A Prion protein; brain, r 20.6 57 0.0019 26.2 2.5 26 75-113 189-214 (219)
No 1
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=99.94 E-value=3.3e-27 Score=164.75 Aligned_cols=64 Identities=28% Similarity=0.482 Sum_probs=56.0
Q ss_pred cCHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCC-cccC
Q psy10947 76 MDKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEKGK-CSIM 139 (139)
Q Consensus 76 ~~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~ek~~-C~il 139 (139)
.++.++|+.|||||.|++++|||||+|++||++||++++.+||||+|++.++|||+||++ |+||
T Consensus 13 s~i~q~rk~VeQLr~Ea~i~RikVSqaaadL~~yc~~~~~~DpLl~Gvp~~~NPFkeKk~~c~lL 77 (77)
T 3v5w_G 13 ASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFSAIL 77 (77)
T ss_dssp -CHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHSGGGCTTTSCCCGGGCTTTTC-------
T ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCCCCCcCccccC
Confidence 469999999999999999999999999999999999999999999999999999999876 7775
No 2
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=99.88 E-value=5.8e-24 Score=146.84 Aligned_cols=56 Identities=38% Similarity=0.677 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC
Q psy10947 77 DKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAE 132 (139)
Q Consensus 77 ~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~e 132 (139)
+++++|++|||||.||+++|+|||+||++|++||++|+++||||+|++.++|||+|
T Consensus 18 ~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~~~~DpLl~g~~~~~NPf~e 73 (73)
T 1got_G 18 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKE 73 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGCHHHHCCCGGGCTTCC
T ss_pred cHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCCCC
Confidence 68999999999999999999999999999999999999999999999977899986
No 3
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.70 E-value=1.8e-18 Score=150.33 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=79.4
Q ss_pred HhhhhhhccccchHhHHHHHhhc--cccccCC--Cccccc-chhhhhhhccCCCCChhhhhhcCHHHHHHHHHHHHHHhc
Q psy10947 19 ENMKYQATMERWPLSKSIQAYLV--PTFISHI--GTLNST-YGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQAT 93 (139)
Q Consensus 19 eQLr~Ea~~~R~~VSka~~dl~~--~~~~~~p--G~vntt-~~i~k~~r~~~~~~~~~~m~~~~~~~lkk~VeqLr~el~ 93 (139)
+|||.+ -+|-|.-+.+=|-.- .-.+..| |||||| +|+.|..- | . ...+.++++++++|||||.++.
T Consensus 166 ~q~~~~--k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~---~---~-~~~~~~~~~~r~~veqLk~~l~ 236 (424)
T 2pbi_A 166 EQYRTG--KERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTN---P---N-EVKKQTVTAVRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHH--TTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSC---T---T-CCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhh--hccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccC---c---c-ccccccHHHHHHHHHHHHHHhc
Confidence 566643 445555555444442 2234444 999999 99887111 1 0 1223478999999999999999
Q ss_pred cCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCC
Q psy10947 94 MERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEK 133 (139)
Q Consensus 94 ~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~ek 133 (139)
++|+|||+|+++|++||++|.++||||+|+.+ +|||++.
T Consensus 237 ~~rikvS~~~e~l~~y~e~~~~~DPll~g~~~-sNPw~~~ 275 (424)
T 2pbi_A 237 RSTVKSSVSLGGIVKYSEQFSSNDAIMSGCLP-SNPWITD 275 (424)
T ss_dssp SCCCCHHHHHHHHHHHHHHHGGGCHHHHCCSS-CCHHHHC
T ss_pred ccceeHHHHHHHHHHHHHhhccCCCccccCCC-CCCCCCC
Confidence 99999999999999999999999999999976 7999965
No 4
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=99.19 E-value=9.1e-12 Score=86.76 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=33.1
Q ss_pred cccCHHHHHHHHHhhhhhhccccchHhHHHHHhhcccc
Q psy10947 7 AAMDKDALKKQIENMKYQATMERWPLSKSIQAYLVPTF 44 (139)
Q Consensus 7 ~~~~~~~~r~~veQLr~Ea~~~R~~VSka~~dl~~~~~ 44 (139)
.++++.|+|++|||||+||+++|+|||+|++||+....
T Consensus 11 ~ss~i~q~rk~VeQLr~Ea~i~RikVSqaaadL~~yc~ 48 (77)
T 3v5w_G 11 NTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCE 48 (77)
T ss_dssp ---CHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999998654
No 5
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=98.98 E-value=2.3e-10 Score=78.67 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=33.2
Q ss_pred cCHHHHHHHHHhhhhhhccccchHhHHHHHhhccc
Q psy10947 9 MDKDALKKQIENMKYQATMERWPLSKSIQAYLVPT 43 (139)
Q Consensus 9 ~~~~~~r~~veQLr~Ea~~~R~~VSka~~dl~~~~ 43 (139)
++++++|++|||||.|++++|+|||+||++|+...
T Consensus 17 ~~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yc 51 (73)
T 1got_G 17 TEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYV 51 (73)
T ss_dssp THHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHH
Confidence 49999999999999999999999999999999865
No 6
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.47 E-value=5.8e-05 Score=65.55 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHhhhhhhccccchHhHHHHHhhccc
Q psy10947 9 MDKDALKKQIENMKYQATMERWPLSKSIQAYLVPT 43 (139)
Q Consensus 9 ~~~~~~r~~veQLr~Ea~~~R~~VSka~~dl~~~~ 43 (139)
-+++++|++|||||.|++.+|+|||+|+++|+...
T Consensus 219 ~~~~~~r~~veqLk~~l~~~rikvS~~~e~l~~y~ 253 (424)
T 2pbi_A 219 QTVTAVRKEIMYYQQALMRSTVKSSVSLGGIVKYS 253 (424)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcccceeHHHHHHHHHHHH
Confidence 38999999999999999999999999999997653
No 7
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=40.10 E-value=19 Score=24.89 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=24.6
Q ss_pred cCCCCC-hhhhhhcCHHHHHHHHHHHHHHhc
Q psy10947 64 SNGAMD-PSVLAAMDKDALKKQIENMKYQAT 93 (139)
Q Consensus 64 ~~~~~~-~~~m~~~~~~~lkk~VeqLr~el~ 93 (139)
|+|+++ |+...-..+.|+-.+|+.||.+.+
T Consensus 39 KRGS~DmPe~L~~~~~~QideeV~~LKe~Id 69 (83)
T 1zke_A 39 KRGSMDMPKGVNEAFFTQLSEEVERLKELIN 69 (83)
T ss_dssp HTTSSCCCTTCCGGGHHHHHHHHHHHHHHHH
T ss_pred eccCccCccccCHHHHHHHHHHHHHHHHHHH
Confidence 457777 778888889999999999998764
No 8
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=37.38 E-value=18 Score=26.53 Aligned_cols=24 Identities=13% Similarity=0.316 Sum_probs=2.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccC
Q psy10947 115 KNDPLIHAPDKKNNPWAEKGKCSIM 139 (139)
Q Consensus 115 ~~DPLL~g~~~~sNPf~ek~~C~il 139 (139)
...|||.|-.. +.|+..+++|++|
T Consensus 121 tg~p~~~~~~~-~~~~~~~~~~~~~ 144 (151)
T 2pih_A 121 TGGDLLKGETG-SKVKHSNNSCSLL 144 (151)
T ss_dssp TCCC---------------------
T ss_pred CCCCcccccCC-CCCCCCCCcchHH
Confidence 45899988655 5677667889875
No 9
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=32.58 E-value=20 Score=26.67 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.1
Q ss_pred cCHHHHHHHHHhhhhhhccccchHhH
Q psy10947 9 MDKDALKKQIENMKYQATMERWPLSK 34 (139)
Q Consensus 9 ~~~~~~r~~veQLr~Ea~~~R~~VSk 34 (139)
..+++++++|+.|.-+.++||.+++.
T Consensus 55 ~~~d~L~lQ~esmeaalkmEr~~~~e 80 (130)
T 3cl3_D 55 VQVDQLRMQGQSVEAALRMERQAASE 80 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999998873
No 10
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.41 E-value=43 Score=24.14 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Q psy10947 77 DKDALKKQIENMKYQATMERWPLSKSIQAMREY 109 (139)
Q Consensus 77 ~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Y 109 (139)
-++.|+++|+.||.++..=.+--.....+|...
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~ 48 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGH 48 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888887766555555555555443
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.02 E-value=34 Score=24.25 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=22.9
Q ss_pred cccCHHHHHHHHHhhhhhhccccchHhHHHHHhh
Q psy10947 7 AAMDKDALKKQIENMKYQATMERWPLSKSIQAYL 40 (139)
Q Consensus 7 ~~~~~~~~r~~veQLr~Ea~~~R~~VSka~~dl~ 40 (139)
.+..+..+|+.|+.|+.|-.-=|-.+..-=..|.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557788888888888887665555544444443
No 12
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=29.83 E-value=77 Score=21.32 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCC
Q psy10947 100 SKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEK 133 (139)
Q Consensus 100 S~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~ek 133 (139)
..-..+++.|+++=..-| ..|++|..|+|++-
T Consensus 31 ~~~l~~Il~~ve~L~evD--t~~VeP~~~~lReD 62 (92)
T 3kfu_G 31 LQDLKRILDFVDALPRVE--EGGAEEALGRLRED 62 (92)
T ss_dssp HHHHHHHHHHHHTCCCCC--CCCCCCCCCCCBCS
T ss_pred HHHHHHHHHHHHHHHhcC--CCCCCCCcCCCCCC
Confidence 345567999999987666 56777678999963
No 13
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=29.68 E-value=75 Score=22.08 Aligned_cols=37 Identities=8% Similarity=0.163 Sum_probs=28.2
Q ss_pred ccCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCC
Q psy10947 93 TMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNP 129 (139)
Q Consensus 93 ~~~RiKVS~aa~~Li~Yceq~~~~DPLL~g~~~~sNP 129 (139)
...+.+..+.+..++.-...+....||..+|++..-|
T Consensus 8 e~~~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~p 44 (123)
T 3hme_A 8 ENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAP 44 (123)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTST
T ss_pred hccCCHHHHHHHHHHHHHHhCCccHhhcCCCChhhcc
Confidence 3455677889999999999999999999988765444
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.03 E-value=50 Score=21.02 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=21.8
Q ss_pred ccCHHHHHHHHHhhhhhhccccchHhHHHH
Q psy10947 8 AMDKDALKKQIENMKYQATMERWPLSKSIQ 37 (139)
Q Consensus 8 ~~~~~~~r~~veQLr~Ea~~~R~~VSka~~ 37 (139)
.+.-+|+-++||-||.|-+.=|..++--+.
T Consensus 2 ~asYdQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 2 AASYDQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 456788888888888888777766655443
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.72 E-value=30 Score=21.57 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHHhcc
Q psy10947 77 DKDALKKQIENMKYQATM 94 (139)
Q Consensus 77 ~~~~lkk~VeqLr~el~~ 94 (139)
+++.++.+++.||.+...
T Consensus 20 d~eaLk~E~~eLk~k~~~ 37 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEA 37 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567777777777766553
No 16
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=26.46 E-value=14 Score=26.56 Aligned_cols=40 Identities=15% Similarity=0.384 Sum_probs=24.2
Q ss_pred chhHHHH-HHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCccc
Q psy10947 97 WPLSKSI-QAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCSI 138 (139)
Q Consensus 97 iKVS~aa-~~Li~Yceq~~~~DPLL~g~~~~sNPf~ek~~C~i 138 (139)
|.++.+| +.|.++..+.. .+-.|.- ..+.+||...++|+.
T Consensus 5 ItlT~~A~~~l~~~l~~~~-~~l~Lr~-~dg~g~y~k~ggCsg 45 (128)
T 2p2e_A 5 ITVTDDAAKKLQRYTDDSN-AVLLLDF-DDGVGALSKVGVCSL 45 (128)
T ss_dssp EEECHHHHHHHHHHHTCTT-EEEEEEE-CSSCSGGGGSSCCCC
T ss_pred EEECHHHHHHHHHHHhcCC-ceEEEEE-eCCCCccccCCCCCC
Confidence 3445444 44666666543 2333432 255899999999986
No 17
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=25.95 E-value=41 Score=20.76 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhh
Q psy10947 99 LSKSIQAMREYVEEN 113 (139)
Q Consensus 99 VS~aa~~Li~Yceq~ 113 (139)
=|+++++++.|...|
T Consensus 30 WS~~~e~I~sYV~~N 44 (45)
T 3l32_A 30 WSQTVEEIVSYVTVN 44 (45)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 599999999998765
No 18
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12 a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Probab=25.34 E-value=25 Score=31.80 Aligned_cols=28 Identities=32% Similarity=0.648 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC
Q psy10947 99 LSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAE 132 (139)
Q Consensus 99 VS~aa~~Li~Yceq~~~~DPLL~g~~~~sNPf~e 132 (139)
.++ +.+++.|+++|..+|..+. +|-|+|
T Consensus 479 i~q-aDeM~RYIeen~~Rde~~n-----PnkWWe 506 (579)
T 2fok_A 479 IGQ-ADEMQRYVEENQTRNKHIN-----PNEWWK 506 (579)
T ss_dssp HHH-HHHHHHHHHHHHHCCTTTC-----TTCGGG
T ss_pred hhh-HHHHHHHHHhccccccccC-----chhhhh
Confidence 444 5678899999999998876 366886
No 19
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=25.17 E-value=74 Score=21.88 Aligned_cols=28 Identities=11% Similarity=0.291 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhCCCCCC-------C-CCCCCCCCCCC
Q psy10947 101 KSIQAMREYVEENEKNDPL-------I-HAPDKKNNPWA 131 (139)
Q Consensus 101 ~aa~~Li~Yceq~~~~DPL-------L-~g~~~~sNPf~ 131 (139)
....+||+|..++. +|+ | .|++ +.|||.
T Consensus 81 ~sl~eLV~~y~~~~--~~i~~~~~~~L~~Pv~-r~~~We 116 (116)
T 2kk6_A 81 SNIPQLIDHHYTTK--QVITKKSGVVLLNPIP-KDKKWI 116 (116)
T ss_dssp SCHHHHHHHHHHTT--CCSCTTTTCCCCSCCC-CCCCCC
T ss_pred CCHHHHHHHHhhCC--CCccCCCCCeECcccC-CCCCCC
Confidence 46678999998874 442 3 4554 467883
No 20
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=23.21 E-value=1e+02 Score=21.00 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhCCCC-----CCCCCCCCCCCCCCCC
Q psy10947 100 SKSIQAMREYVEENEKND-----PLIHAPDKKNNPWAEK 133 (139)
Q Consensus 100 S~aa~~Li~Yceq~~~~D-----PLL~g~~~~sNPf~ek 133 (139)
..-..+++.|+++=..-| |+.++.+. .|+|++-
T Consensus 29 ~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~-~~~lReD 66 (100)
T 3ip4_C 29 ANTLESILDFAKQNDSADTEGVEPTYHVLDL-QNVLRED 66 (100)
T ss_dssp HHHHHHHHHHHGGGGGSCCTTCCCCSCCSCC-CCCCBCS
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccccccc-cCCCCCC
Confidence 344567899999876655 66666554 7999963
No 21
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=21.64 E-value=34 Score=26.35 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCC
Q psy10947 100 SKSIQAMREYVEENEKNDPLI 120 (139)
Q Consensus 100 S~aa~~Li~Yceq~~~~DPLL 120 (139)
+.|.+.|..||+++...|+.+
T Consensus 140 ~~AL~~l~~fCeesr~~~~wv 160 (167)
T 3ffm_A 140 DPALEKLSLFCEESRSVNDWV 160 (167)
T ss_dssp CHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHhcccCccc
Confidence 467888999999988777665
No 22
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A
Probab=20.63 E-value=57 Score=26.17 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=18.5
Q ss_pred hcCHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhh
Q psy10947 75 AMDKDALKKQIENMKYQATMERWPLSKSIQAMREYVEEN 113 (139)
Q Consensus 75 ~~~~~~lkk~VeqLr~el~~~RiKVS~aa~~Li~Yceq~ 113 (139)
++++..+.++|+|| |++..++|.+.+
T Consensus 189 e~~vrI~~rlI~em-------------C~~qY~~~s~~~ 214 (219)
T 1dx0_A 189 ETDIKMMERVVEQM-------------CITQYQRESQAY 214 (219)
T ss_dssp HHHHHHHHHHHHHH-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHH
Confidence 34566667777777 777888887775
Done!