RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10947
(139 letters)
>gnl|CDD|238024 cd00068, GGL, G protein gamma subunit-like motifs, the
alpha-helical G-gamma chain dimerizes with the G-beta
propeller subunit as part of the heterotrimeric
G-protein complex; involved in signal transduction via
G-protein-coupled receptors.
Length = 57
Score = 70.0 bits (172), Expect = 4e-17
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 78 KDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEKG 134
D LKK++E ++ + + ER +SK+ + +Y E+N +NDPL+ P +NPW EK
Sbjct: 1 VDQLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAENDPLLTGPPSPSNPWIEKK 57
Score = 33.4 bits (77), Expect = 0.004
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 11 KDALKKQIENMKYQATMERWPLSKSIQAYL 40
D LKK++E ++ + + ER +SK+ L
Sbjct: 1 VDQLKKEVEQLRKELSRERLKVSKAAAELL 30
>gnl|CDD|216034 pfam00631, G-gamma, GGL domain. G-protein gamma like domains (GGL)
are found in the gamma subunit of the heterotrimeric G
protein complex and in regulators of G protein signaling
(RGS) proteins. It is also found fused to an inactive
Galpha in the Dictyostelium protein gbqA. G-gamma likely
shares a common origin with the helical N-terminal unit
of G-beta. All organisms that posses a G-beta possess a
G-gamma.
Length = 69
Score = 68.1 bits (167), Expect = 3e-16
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 75 AMDKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHA--PDKKNNPWAE 132
+ K LK++IE +K + ER +SK+ + + +Y E+ DPL+ P K NPW E
Sbjct: 2 SQLKLRLKREIEQLKEELERERIKVSKACKELIDYCEQRSTKDPLLPGVWPPNKENPWIE 61
Query: 133 K-GKCSIM 139
K G C I+
Sbjct: 62 KDGCCWIL 69
Score = 32.3 bits (74), Expect = 0.012
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 8 AMDKDALKKQIENMKYQATMERWPLSKSIQAYL 40
+ K LK++IE +K + ER +SK+ + +
Sbjct: 2 SQLKLRLKREIEQLKEELERERIKVSKACKELI 34
>gnl|CDD|128520 smart00224, GGL, G protein gamma subunit-like motifs.
Length = 63
Score = 59.6 bits (145), Expect = 4e-13
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 78 KDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAE-KGKC 136
KD L+K++E ++ + + ER +SK+ + + Y E++ + DPL+ P NP+ E K C
Sbjct: 1 KDQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHAEEDPLLTGPPPSKNPFIEDKTSC 60
Query: 137 SIM 139
I+
Sbjct: 61 WIL 63
Score = 24.9 bits (55), Expect = 5.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 11 KDALKKQIENMKYQATMERWPLSKSIQAYL 40
KD L+K++E ++ + + ER +SK+ + L
Sbjct: 1 KDQLRKEVEQLRKELSRERIKVSKAAEELL 30
>gnl|CDD|132296 TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein. This
model describes a small, well-conserved bacterial
protein family. Its sequence largely consists of a
domain, HhH-GPD, found in a variety of related base
excision DNA repair enzymes (see pfam00730) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 177
Score = 27.9 bits (62), Expect = 1.7
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 61 IHRSNGAMDPSVLAAMDKDALKKQIENMKYQATMERWP--LSKSIQAMREYVEENEKND 117
I R G++D +A D A + + + R+P ++K +QA+ +YV + D
Sbjct: 43 IARRMGSLDAEDIAKYDPQAF---VALFSERPAVHRFPGSMAKRVQALAQYVVDTYDGD 98
>gnl|CDD|238368 cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric
cytosolic enzyme that decarboxylates the four acetate
side chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, without requiring any prosthetic
groups or cofactors. This reaction is located at the
branching point of the tetrapyrrole biosynthetic
pathway, leading to the biosynthesis of heme,
chlorophyll or bacteriochlorophyll. URO-D deficiency is
responsible for the human genetic diseases familial
porphyria cutanea tarda (fPCT) and hepatoerythropoietic
porphyria (HEP).
Length = 335
Score = 27.9 bits (63), Expect = 1.9
Identities = 8/23 (34%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 66 GAMDPSVLAAMDKDALKKQIENM 88
G +DP++L A K+A++K+++ +
Sbjct: 278 GNLDPALLYA-PKEAIEKEVKRI 299
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 27.7 bits (62), Expect = 2.4
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 7 AAMDKDALKKQIENMKYQATMERWPLSKSIQAYL-VPTFISHIGTLNSTYGI--FKCIHR 63
K + + Y E + + L P FIS +L YGI + I
Sbjct: 301 VEKLKKIINRATGGAAYFEVSETDEDKEEVPTKLRNPKFISPFESLTEMYGIPKYGEI-- 358
Query: 64 SNGAMDPSVLAA 75
DP+ A
Sbjct: 359 -----DPTPFLA 365
>gnl|CDD|149946 pfam09069, efhand_2, EF-hand. Members of this family adopt a
helix-loop-helix motif, as per other EF hand domains.
However, since they do not contain the canonical
pattern of calcium binding residues found in many EF
hand domains, they do not bind calcium ions. The main
function of this domain is the provision of specificity
in beta-dystroglycan recognition, though in dystrophin
it serves an additional role: stabilisation of the WW
domain (pfam00397), enhancing dystroglycan binding.
Length = 89
Score = 26.1 bits (58), Expect = 3.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 57 IFKCIHRSNGAMDPSVLAAMDKDALK 82
+F I SNG MD L + +AL+
Sbjct: 8 LFSQISDSNGLMDQRKLGLLLHEALQ 33
>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA
processing and modification].
Length = 1175
Score = 27.2 bits (60), Expect = 3.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 39 YLVPTFISHIGTLNSTYGIFKCIHRS 64
PTFI H + +G+ + I S
Sbjct: 462 RCFPTFILHFIPDDIDFGMDELIEAS 487
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 26.6 bits (59), Expect = 4.9
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 59 KCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQATMERW 97
K ++R + P V AA+ + +N +YQ +E +
Sbjct: 139 KELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEVF 177
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 26.2 bits (58), Expect = 6.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 44 FISHIGTLNSTYGIFKCIHRSNGAMDPSVLAA 75
F+ + T+N+ YG+F I R G + VL A
Sbjct: 315 FVERLNTINARYGLFSEI-RGLGLLIGCVLNA 345
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 26.2 bits (58), Expect = 6.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 21/65 (32%)
Query: 45 ISHIGTLNSTYGI-FKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQATMERWPLSKSI 103
+S IG +YG+ FKC +R G + A+KK +E+ E P+ K I
Sbjct: 6 LSKIG--EGSYGVVFKCRNRETGQI----------VAIKKFVES-------EDDPVIKKI 46
Query: 104 QAMRE 108
A+RE
Sbjct: 47 -ALRE 50
>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide
reductase A/B protein; Provisional.
Length = 521
Score = 26.4 bits (58), Expect = 6.8
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 67 AMDPSVLAAMDKDALKKQIENMKYQATME 95
D + LK+ + +YQ T
Sbjct: 371 GFDAATYKKPSDAELKRTLTEEQYQITQN 399
>gnl|CDD|224799 COG1887, TagB, Putative glycosyl/glycerophosphate transferases
involved in teichoic acid biosynthesis
TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer
membrane].
Length = 388
Score = 26.2 bits (58), Expect = 7.0
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 99 LSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEKGKC 136
S + A+ EY++ N N L+ KK + K
Sbjct: 39 FSDNPLAIFEYLKANIDNYELVWVVKKKYSDLFAIDKY 76
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 26.1 bits (58), Expect = 7.1
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 61 IHRSNGAMDPSVLAAMDKDALKKQIENM----KYQATMERWPLSKSIQAMREYVEENEKN 116
I+ +N MD V A ++K A+KK ++ + T ++ L +S+ M E NE
Sbjct: 117 IYMNNETMDNFVFAVVNKKAMKKFRKDNYDLSLFTKTSDKPKLPESLVVM---SESNEVT 173
Query: 117 DPLIH 121
D L+
Sbjct: 174 DLLLT 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.128 0.378
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,892,499
Number of extensions: 582645
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 28
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)