RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10947
         (139 letters)



>1gp2_G G protein GI gamma 2; signal transduction protein, GTPase, WD40,
           RAS-like, complex (GTP-binding/transducer); HET: GDP;
           2.30A {Bos taurus} SCOP: a.137.3.1 PDB: 1gg2_G* 2bcj_G*
           3ah8_G* 1xhm_B 2qns_B 3kj5_B 3pvu_G* 3cik_G 3krw_G*
           3krx_G* 3psc_G 1omw_G* 3pvw_G* 3sn6_G*
          Length = 71

 Score = 79.1 bits (195), Expect = 7e-21
 Identities = 18/69 (26%), Positives = 32/69 (46%)

Query: 71  SVLAAMDKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPW 130
           +          +K +E +K +A ++R  +SK+   +  Y E + K DPL+       NP+
Sbjct: 2   ASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF 61

Query: 131 AEKGKCSIM 139
            EK   S +
Sbjct: 62  REKKFFSAI 70



 Score = 34.1 bits (78), Expect = 0.002
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 4  SVLAAMDKDALKKQIENMKYQATMERWPLSKSIQ 37
          +          +K +E +K +A ++R  +SK+  
Sbjct: 2  ASNNTASIAQARKLVEQLKMEANIDRIKVSKAAA 35


>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer
           signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
           a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
          Length = 73

 Score = 69.6 bits (170), Expect = 5e-17
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 71  SVLAAMDKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPW 130
           ++    +KD LK +++ +K + T+ER  +SK  +  R+YVEE    DPL+    +  NP+
Sbjct: 12  NIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPF 71

Query: 131 AE 132
            E
Sbjct: 72  KE 73



 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 4  SVLAAMDKDALKKQIENMKYQATMERWPLSKSIQ 37
          ++    +KD LK +++ +K + T+ER  +SK  +
Sbjct: 12 NIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCE 45


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.15
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 13/31 (41%)

Query: 10 DKDALKKQIEN-MK-Y----------QATME 28
          +K ALKK ++  +K Y          +ATME
Sbjct: 18 EKQALKK-LQASLKLYADDSAPALAIKATME 47



 Score = 29.9 bits (66), Expect = 0.15
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 13/31 (41%)

Query: 77 DKDALKKQIEN-MK-Y----------QATME 95
          +K ALKK ++  +K Y          +ATME
Sbjct: 18 EKQALKK-LQASLKLYADDSAPALAIKATME 47


>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
           multi-protein complex, DNA- binding, magnesium; 3.65A
           {Schizosaccharomyces pombe}
          Length = 1752

 Score = 26.2 bits (57), Expect = 5.4
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 41  VPTFISHIGTLNSTYGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQATMER---- 96
            P F  HIG L+    I +C+  + G +           +  K  +  +Y+    R    
Sbjct: 90  KPVF--HIGFLSKIKKILECVCWNCGKL-------KIDSSNPKFNDTQRYRDPKNRLNAV 140

Query: 97  WPLSKSIQAMREYVEENEKNDPLIHAPDKKNNP 129
           W + K+       +     N  L +      + 
Sbjct: 141 WNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHG 173


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.128    0.378 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,059,432
Number of extensions: 106280
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 14
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)