RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10947
         (139 letters)



>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma
           chain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 68

 Score = 71.3 bits (175), Expect = 3e-18
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 76  MDKDALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPWAEK 133
            +KD LK +++ +K + T+ER  +SK  +  R+YVEE    DPL+    +  NP+ E 
Sbjct: 10  TEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKEL 67



 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 9  MDKDALKKQIENMKYQATMERWPLSKSIQ 37
           +KD LK +++ +K + T+ER  +SK  +
Sbjct: 10 TEKDKLKMEVDQLKKEVTLERMLVSKCCE 38


>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma
           chain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 54

 Score = 59.7 bits (145), Expect = 7e-14
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 79  DALKKQIENMKYQATMERWPLSKSIQAMREYVEENEKNDPLIHAPDKKNNPW 130
              +K +E +K +A ++R  +SK+   +  Y E + K DPL+       NP+
Sbjct: 3   AQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF 54



 Score = 30.1 bits (68), Expect = 0.016
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 12 DALKKQIENMKYQATMERWPLSKSIQAYL 40
             +K +E +K +A ++R  +SK+    +
Sbjct: 3  AQARKLVEQLKMEANIDRIKVSKAAADLM 31


>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein
           BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
          Length = 135

 Score = 25.6 bits (56), Expect = 1.9
 Identities = 8/48 (16%), Positives = 14/48 (29%)

Query: 1   MDPSVLAAMDKDALKKQIENMKYQATMERWPLSKSIQAYLVPTFISHI 48
                L    KD   +      +   +E   LS  + + L      H+
Sbjct: 63  HHFPALKKFTKDVSLELKLFSHFLHEVEELELSNEVLSVLSARMADHM 110


>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 97

 Score = 25.1 bits (55), Expect = 1.9
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 57 IFKCIHRSNGAMDPSVLAAMDKDALK 82
          +FK +  S G  D   L  +  D+++
Sbjct: 9  LFKQVASSTGFCDQRRLGLLLHDSIQ 34


>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human
           immunodeficiency virus type 1 [TaxId: 11676]}
          Length = 424

 Score = 25.3 bits (55), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 97  WPLSKS-IQAMREYVEENEKNDPLIHAPDKKNNPWA 131
           WPL++  I+A+ E   E EK      +     NP+ 
Sbjct: 20  WPLTEEKIKALVEICTEMEKEG--KISKIGPENPYN 53


>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein BCE_G9241_0798
           {Bacillus cereus [TaxId: 1396]}
          Length = 121

 Score = 24.3 bits (53), Expect = 3.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 6   LAAMDKDALKKQIENMKYQATMERWPLSKSIQAYLVPTFISHI 48
           L A  K+A +   E   ++  + +  L   I  +  PTFI+H+
Sbjct: 58  LMAFSKEAEQAAKEIRAFKLNIIQKQLEGKITIHFTPTFINHM 100


>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein
           BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
          Length = 130

 Score = 24.4 bits (53), Expect = 3.8
 Identities = 5/48 (10%), Positives = 12/48 (25%)

Query: 1   MDPSVLAAMDKDALKKQIENMKYQATMERWPLSKSIQAYLVPTFISHI 48
               +L                ++ T         I++ + P    H+
Sbjct: 65  QTAPLLDQFLDQNRVSVASLRDFKKTARDLIEQCKIKSIIHPLLADHV 112


>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human
           immunodeficiency virus type 2 [TaxId: 11709]}
          Length = 427

 Score = 24.1 bits (52), Expect = 7.5
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 97  WPLSKS-IQAMREYVEENEKNDPLIHAPDKKNNPWA 131
           WPL+K  I+A++E  E+ EK   L  AP    NP+ 
Sbjct: 22  WPLTKEKIEALKEICEKMEKEGQLEEAPP--TNPYN 55


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score = 24.4 bits (52), Expect = 7.9
 Identities = 11/97 (11%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 45  ISHIGTLNSTYGIFKCIHRSNGAMDPSVLAAMDKDALKKQIENMKYQATMER-WPLSKS- 102
           + H+G +     + +C+    G     +L     + +++ +     +      W L K+ 
Sbjct: 89  VFHVGFIAKIKKVCECVCMHCG----KLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTK 144

Query: 103 IQAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCSIM 139
           +    +   E++    +         P   K    ++
Sbjct: 145 MVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLV 181


>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase
          {Alfalfa (Medicago sativa) [TaxId: 3879]}
          Length = 101

 Score = 23.3 bits (50), Expect = 9.1
 Identities = 4/20 (20%), Positives = 6/20 (30%)

Query: 56 GIFKCIHRSNGAMDPSVLAA 75
           I   I      +  S L +
Sbjct: 33 NIPNIIQNHGKPISLSNLVS 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.378 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 501,991
Number of extensions: 20849
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 20
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)