BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10949
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UE5|B Chain B, Ecp-Cleaved Actin In Complex With Spir Domain D
pdb|4EFH|B Chain B, Acanthamoeba Actin Complex With Spir Domain D
Length = 66
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 42/47 (89%), Gaps = 1/47 (2%)
Query: 93 KKDAHAIILEFIRSRPPLRKASDRKL-PPRQYESTPRERLLEDIKKG 138
KKDAHA+ILEFIRSRPPL+KASDR+L PPR E +PRE+L+E I+KG
Sbjct: 6 KKDAHAMILEFIRSRPPLKKASDRQLGPPRMCEPSPREQLMESIRKG 52
>pdb|3MN7|S Chain S, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
Length = 98
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 15/91 (16%)
Query: 63 TPYEILMDDIR------SRRYKLKQVTVDGSIPPRV-KKDAHAIILEFIR-------SRP 108
+P E LM+ IR R LK+ + PPR+ + ++E IR SRP
Sbjct: 2 SPREQLMESIRKGKELKQSRPPLKKASDRQLGPPRMCEPSPREQLMESIRKGKELKQSRP 61
Query: 109 PLRKASDRKL-PPRQYESTPRERLLEDIKKG 138
PL+KASDR+L PPR E +PRE+L+E I+KG
Sbjct: 62 PLKKASDRQLGPPRMCEPSPREQLMESIRKG 92
>pdb|3MN5|S Chain S, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
Length = 38
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 113 ASDRKL-PPRQYESTPRERLLEDIKKG 138
ASDR+L PPR E +PRE+L+E I+KG
Sbjct: 1 ASDRQLGPPRMCEPSPREQLMESIRKG 27
>pdb|4DK1|A Chain A, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|B Chain B, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|C Chain C, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|D Chain D, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain
Length = 341
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/85 (18%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 29 GGLVRLWIQVLRELRRGVQLKKVCHTRNPIEYQMTPYEILMDDIRSRRYKLKQVTVDGSI 88
G + +L++++ +++++G L ++ +YQ + +++RYKL + D ++
Sbjct: 41 GKITKLYVKLGQQVKKGDLLAEIDPATYEADYQSAQANLASTQEQAQRYKL--LVADQAV 98
Query: 89 PPRVKKDAHAIILEFIRSRPPLRKA 113
+ DA+A +++S+ + +A
Sbjct: 99 SKQQYADANA---AYLQSKAAVEQA 120
>pdb|3M3N|W Chain W, Structure Of A Longitudinal Actin Dimer Assembled By
Tandem W Domains
Length = 101
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 38 VLRELRRGVQLKKVCHTRNPIEYQMTPYEILMDDIRSRRYKLKQVTVDGSIPPRVKKDAH 97
+L ++R G QLKKV P+ + + L+D IR + +LK+V + +DA
Sbjct: 9 LLDQIREGAQLKKVEQNSRPVSA--SGRDALLDQIR-QGIQLKKVEQNSRPVSASGRDA- 64
Query: 98 AIILEFIRSRPPLRKASDRKLPP 120
+L+ IR L+K ++ P
Sbjct: 65 --LLDQIRQGIQLKKTETQEKNP 85
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstrom
Length = 733
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 92 VKKDAHAIILEFIRSRPPLRKASDRKLPPRQYESTPRERLLEDIKK--GSNHRLRHRESR 149
+ +D +I F + + + DR P Y + +EDIKK H R +R
Sbjct: 8 ITEDGKPVIRVFKKEKGEFKIDYDRDFEPYIYALLKDDSAIEDIKKITAERHGTTVRVTR 67
Query: 150 PDRTARKAL 158
+R +K L
Sbjct: 68 AERVKKKFL 76
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 92 VKKDAHAIILEFIRSRPPLRKASDRKLPPRQYESTPRERLLEDIKK--GSNHRLRHRESR 149
+ +D +I F + + + DR P Y + +EDIKK H R +R
Sbjct: 8 ITEDGKPVIRVFKKEKGEFKIDYDRDFEPYIYALLKDDSAIEDIKKITAERHGTTVRVTR 67
Query: 150 PDRTARKAL 158
+R +K L
Sbjct: 68 AERVKKKFL 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,759,664
Number of Sequences: 62578
Number of extensions: 172150
Number of successful extensions: 317
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 15
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)