Query psy10949
Match_columns 163
No_of_seqs 44 out of 46
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 22:36:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efh_B Protein spire; cytoskel 100.0 5E-29 1.7E-33 175.8 5.3 61 89-149 2-63 (66)
2 3mn7_S Spire DDD; WH2 domain, 99.9 4.1E-27 1.4E-31 176.5 5.5 82 36-143 5-97 (98)
3 3mn7_S Spire DDD; WH2 domain, 99.6 3E-16 1E-20 117.7 5.4 66 63-153 2-68 (98)
4 3mn5_S Protein spire, actin, a 98.1 2.8E-06 9.7E-11 54.3 3.3 36 113-148 1-37 (38)
5 3m3n_W N-WAsp, neural wiskott- 95.8 0.0046 1.6E-07 46.2 2.7 71 37-113 8-78 (101)
6 3m3n_W N-WAsp, neural wiskott- 93.6 0.045 1.5E-06 40.8 3.1 76 64-146 5-80 (101)
7 3m1f_V VOPL, putative uncharac 93.1 0.049 1.7E-06 33.5 2.0 20 128-147 6-25 (31)
8 4efh_B Protein spire; cytoskel 92.7 0.1 3.5E-06 36.6 3.5 50 63-114 8-59 (66)
9 2vcp_D N-WAsp, neural wiskott- 91.6 0.12 4.3E-06 37.0 3.0 45 37-84 17-61 (93)
10 2vcp_D N-WAsp, neural wiskott- 90.1 0.51 1.7E-05 33.8 5.1 51 94-147 12-62 (93)
11 2d1k_C Metastasis suppressor p 86.2 0.39 1.3E-05 29.5 2.0 21 37-57 7-29 (32)
12 1s0p_A CAP, adenylyl cyclase-a 84.9 0.28 9.6E-06 39.2 1.2 41 8-48 111-157 (176)
13 3m1f_V VOPL, putative uncharac 82.6 0.46 1.6E-05 29.1 1.2 17 37-53 8-24 (31)
14 2a40_C Wiskott-aldrich syndrom 79.9 0.73 2.5E-05 28.1 1.4 18 36-53 6-23 (32)
15 2a3z_C WAsp, wiskott-aldrich s 75.3 1.4 4.9E-05 25.8 1.7 21 37-57 4-24 (29)
16 2a41_C Wiskott-aldrich syndrom 74.8 1.6 5.6E-05 26.5 1.9 21 37-57 7-29 (32)
17 2a40_C Wiskott-aldrich syndrom 63.1 4.9 0.00017 24.4 2.3 21 127-147 4-24 (32)
18 2ysr_A DEP domain-containing p 46.3 9.9 0.00034 27.3 2.0 19 32-50 11-29 (105)
19 2iny_A Hexon protein, late pro 29.8 15 0.00051 36.2 0.9 29 1-29 283-328 (942)
20 3tg7_A Hexon protein, late pro 29.8 10 0.00035 37.4 -0.2 29 2-30 319-364 (951)
21 2hwj_A AGR_C_2837P, hypothetic 28.5 14 0.00046 30.1 0.3 89 18-114 83-175 (205)
22 1ft5_A Cytochrome C554; heme-s 23.3 27 0.00092 27.6 1.1 31 59-89 150-194 (211)
No 1
>4efh_B Protein spire; cytoskeleton, contractIle protein, contractIle protein-trans protein complex; HET: ADP; 2.48A {Drosophila melanogaster} PDB: 3ue5_B*
Probab=99.95 E-value=5e-29 Score=175.76 Aligned_cols=61 Identities=56% Similarity=0.853 Sum_probs=59.1
Q ss_pred CccccccHHHHHHHHHhcCCCccccccccCCCC-CCCCChHHHHHHHhhcCCCCCccCCCCC
Q psy10949 89 PPRVKKDAHAIILEFIRSRPPLRKASDRKLPPR-QYESTPRERLLEDIKKGSNHRLRHRESR 149 (163)
Q Consensus 89 PprvkksAh~iILeFIRSRppL~~vserkLkp~-~~~~sLHE~Lm~EIK~~~kLrp~s~~~~ 149 (163)
||+||||||++|||||||||||+|||+|+|+|+ ++++|||||||+|||+++||||+++.+.
T Consensus 2 pprvkk~AheiILefiRSrppL~~vs~rklkp~~~~~~sLHeqLm~eIKq~~kLrpv~~~~~ 63 (66)
T 4efh_B 2 PLGSKKDAHAMILEFIRSRPPLKKASDRQLGPPRMCEPSPREQLMESIRKGKELKQITPPEA 63 (66)
T ss_pred CCcccccHHHHHHHHHhcccchhhhhhcccCCCCCCcCCHHHHHHHHHhccccCCCCCcccc
Confidence 899999999999999999999999999999999 9999999999999999999999998764
No 2
>3mn7_S Spire DDD; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP; 2.00A {Drosophila melanogaster}
Probab=99.93 E-value=4.1e-27 Score=176.50 Aligned_cols=82 Identities=41% Similarity=0.680 Sum_probs=78.8
Q ss_pred HHHHHHHhcccc-------cccee---ccCCCcccccchHHHHHHHHhhcceeeeeeeeCCCCCccccccHHHHHHHHHh
Q psy10949 36 IQVLRELRRGVQ-------LKKVC---HTRNPIEYQMTPYEILMDDIRSRRYKLKQVTVDGSIPPRVKKDAHAIILEFIR 105 (163)
Q Consensus 36 vqVi~ELr~GVK-------LkKv~---~~p~P~Ey~lTPYE~LMdDIR~kRYtLRKV~v~g~iPprvkksAh~iILeFIR 105 (163)
-|||++||+||. ||+|. .+|+|.+ ++||||+||+|||+.| ||||
T Consensus 5 ~q~m~~lr~gv~FIRSRPPLkkvseR~l~P~p~~-~~Sl~E~lme~Ir~~r-------------------------~~~r 58 (98)
T 3mn7_S 5 EQLMESIRKGKELKQSRPPLKKASDRQLGPPRMC-EPSPREQLMESIRKGK-------------------------ELKQ 58 (98)
T ss_pred HHHHHHHHcchhhhcccccccHHHHcccCCCCcc-cCCHHHHHHHHHhccc-------------------------cccc
Confidence 599999999999 99998 8899988 9999999999999998 8999
Q ss_pred cCCCccccccccCCCC-CCCCChHHHHHHHhhcCCCCCc
Q psy10949 106 SRPPLRKASDRKLPPR-QYESTPRERLLEDIKKGSNHRL 143 (163)
Q Consensus 106 SRppL~~vserkLkp~-~~~~sLHE~Lm~EIK~~~kLrp 143 (163)
||||+++||+|+|+|. .+++|+||+||+|||++++|+.
T Consensus 59 srpp~~~as~rkl~p~p~~~~sl~e~ll~~Ik~~~~L~~ 97 (98)
T 3mn7_S 59 SRPPLKKASDRQLGPPRMCEPSPREQLMESIRKGKELKQ 97 (98)
T ss_pred CCCccchhhhhccCCCCCCCCCHHHHHHHHHhcchhccc
Confidence 9999999999999999 8999999999999999999985
No 3
>3mn7_S Spire DDD; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP; 2.00A {Drosophila melanogaster}
Probab=99.62 E-value=3e-16 Score=117.70 Aligned_cols=66 Identities=44% Similarity=0.722 Sum_probs=60.2
Q ss_pred chHHHHHHHHhhcceeeeeeeeCCCCCccccccHHHHHHHHHhcCCCccccccccCCCC-CCCCChHHHHHHHhhcCCCC
Q psy10949 63 TPYEILMDDIRSRRYKLKQVTVDGSIPPRVKKDAHAIILEFIRSRPPLRKASDRKLPPR-QYESTPRERLLEDIKKGSNH 141 (163)
Q Consensus 63 TPYE~LMdDIR~kRYtLRKV~v~g~iPprvkksAh~iILeFIRSRppL~~vserkLkp~-~~~~sLHE~Lm~EIK~~~kL 141 (163)
+|-|.+|+|+|+ | .|||||||||++|++|+|+|. .++.|+||+||++||+++.+
T Consensus 2 ~~~~q~m~~lr~-----------g--------------v~FIRSRPPLkkvseR~l~P~p~~~~Sl~E~lme~Ir~~r~~ 56 (98)
T 3mn7_S 2 SPREQLMESIRK-----------G--------------KELKQSRPPLKKASDRQLGPPRMCEPSPREQLMESIRKGKEL 56 (98)
T ss_pred ChHHHHHHHHHc-----------c--------------hhhhcccccccHHHHcccCCCCcccCCHHHHHHHHHhccccc
Confidence 588999999984 6 799999999999999999999 78999999999999999999
Q ss_pred CccCCCCCcchH
Q psy10949 142 RLRHRESRPDRT 153 (163)
Q Consensus 142 rp~s~~~~~~~~ 153 (163)
.++.+..+++-+
T Consensus 57 ~rsrpp~~~as~ 68 (98)
T 3mn7_S 57 KQSRPPLKKASD 68 (98)
T ss_pred ccCCCccchhhh
Confidence 999998887543
No 4
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=98.06 E-value=2.8e-06 Score=54.30 Aligned_cols=36 Identities=42% Similarity=0.646 Sum_probs=33.6
Q ss_pred cccccCCCC-CCCCChHHHHHHHhhcCCCCCccCCCC
Q psy10949 113 ASDRKLPPR-QYESTPRERLLEDIKKGSNHRLRHRES 148 (163)
Q Consensus 113 vserkLkp~-~~~~sLHE~Lm~EIK~~~kLrp~s~~~ 148 (163)
||||+|.|. .-.+|.+||||++|++++.|+++.+..
T Consensus 1 aserqlgpp~~c~p~preql~esir~g~elkqitpp~ 37 (38)
T 3mn5_S 1 ASDRQLGPPRMCEPSPREQLMESIRKGKELKQITPPE 37 (38)
T ss_pred CcccccCCcccccCCcHHHHHHHHHccccccccCCCC
Confidence 689999999 899999999999999999999998764
No 5
>3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer, ATP-binding, actin cytoskeleton, methylation, M protein, actin-binding, motor protein; HET: HIC ATP; 7.00A {Mus musculus}
Probab=95.83 E-value=0.0046 Score=46.24 Aligned_cols=71 Identities=32% Similarity=0.505 Sum_probs=23.8
Q ss_pred HHHHHHhccccccceeccCCCcccccchHHHHHHHHhhcceeeeeeeeCCCCCccccccHHHHHHHHHhcCCCcccc
Q psy10949 37 QVLRELRRGVQLKKVCHTRNPIEYQMTPYEILMDDIRSRRYKLKQVTVDGSIPPRVKKDAHAIILEFIRSRPPLRKA 113 (163)
Q Consensus 37 qVi~ELr~GVKLkKv~~~p~P~Ey~lTPYE~LMdDIR~kRYtLRKV~v~g~iPprvkksAh~iILeFIRSRppL~~v 113 (163)
.||.++|.|+.||||+.+..|.. -.+=..||+.||.= .+|+||.- +..|. ..++..-|++-|+--.-|+++
T Consensus 8 ~Ll~~Ir~G~~Lrkv~~~~~~~~--~d~r~aLl~~IR~G-~~LKkV~~-~~~~~--s~~~r~~Ll~aIr~al~lkk~ 78 (101)
T 3m3n_W 8 ALLDQIREGAQLKKVEQNSRPVS--ASGRDALLDQIRQG-IQLKKVEQ-NSRPV--SASGRDALLDQIRQGIQLKKT 78 (101)
T ss_dssp HHHHHHHHCCCCBCC------------CHHHHHHHHHHC-CCCBCC-------------------------------
T ss_pred hhHHHHhcCccccccCccCCCCC--CCcchhhHHHHHcc-cccCccCc-ccCCC--CCCchHHHHHHHHHHHHhccc
Confidence 47777888888888875544422 22356777777764 46777752 11221 133444555555544444443
No 6
>3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer, ATP-binding, actin cytoskeleton, methylation, M protein, actin-binding, motor protein; HET: HIC ATP; 7.00A {Mus musculus}
Probab=93.64 E-value=0.045 Score=40.85 Aligned_cols=76 Identities=26% Similarity=0.428 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhcceeeeeeeeCCCCCccccccHHHHHHHHHhcCCCccccccccCCCCCCCCChHHHHHHHhhcCCCCCc
Q psy10949 64 PYEILMDDIRSRRYKLKQVTVDGSIPPRVKKDAHAIILEFIRSRPPLRKASDRKLPPRQYESTPRERLLEDIKKGSNHRL 143 (163)
Q Consensus 64 PYE~LMdDIR~kRYtLRKV~v~g~iPprvkksAh~iILeFIRSRppL~~vserkLkp~~~~~sLHE~Lm~EIK~~~kLrp 143 (163)
|--.|||-||+=.- ||||..+.. | .-.+++.-+|+.||.=--|++|+...... ..+-..-|+.+|+..-.|+.
T Consensus 5 ~r~~Ll~~Ir~G~~-Lrkv~~~~~-~--~~~d~r~aLl~~IR~G~~LKkV~~~~~~~---s~~~r~~Ll~aIr~al~lkk 77 (101)
T 3m3n_W 5 NKAALLDQIREGAQ-LKKVEQNSR-P--VSASGRDALLDQIRQGIQLKKVEQNSRPV---SASGRDALLDQIRQGIQLKK 77 (101)
T ss_dssp THHHHHHHHHHCCC-CBCC-------------CHHHHHHHHHHCCCCBCC------------------------------
T ss_pred chhhhHHHHhcCcc-ccccCccCC-C--CCCCcchhhHHHHHcccccCccCcccCCC---CCCchHHHHHHHHHHHHhcc
Confidence 35689999999887 999986542 2 33678999999999877888887654322 24568899999999999998
Q ss_pred cCC
Q psy10949 144 RHR 146 (163)
Q Consensus 144 ~s~ 146 (163)
+..
T Consensus 78 ~~t 80 (101)
T 3m3n_W 78 TET 80 (101)
T ss_dssp ---
T ss_pred cCc
Confidence 764
No 7
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=93.05 E-value=0.049 Score=33.47 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=16.0
Q ss_pred HHHHHHHhhcCCCCCccCCC
Q psy10949 128 RERLLEDIKKGSNHRLRHRE 147 (163)
Q Consensus 128 HE~Lm~EIK~~~kLrp~s~~ 147 (163)
|-.|||||+++-||||.+..
T Consensus 6 rSKLMEqIRqGVkLr~~~ks 25 (31)
T 3m1f_V 6 HSKLMEQIRQGVKLKSATKS 25 (31)
T ss_dssp HHHHHHHHHHCCCCBCC---
T ss_pred HHHHHHHHHhhhccccCCCC
Confidence 67899999999999998743
No 8
>4efh_B Protein spire; cytoskeleton, contractIle protein, contractIle protein-trans protein complex; HET: ADP; 2.48A {Drosophila melanogaster} PDB: 3ue5_B*
Probab=92.67 E-value=0.1 Score=36.62 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=36.0
Q ss_pred chHHHHHHHHhhcceeeeeeeeCCCCCcc--ccccHHHHHHHHHhcCCCccccc
Q psy10949 63 TPYEILMDDIRSRRYKLKQVTVDGSIPPR--VKKDAHAIILEFIRSRPPLRKAS 114 (163)
Q Consensus 63 TPYE~LMdDIR~kRYtLRKV~v~g~iPpr--vkksAh~iILeFIRSRppL~~vs 114 (163)
.-+|++||-||++ =-|++|..- ...|. -..+-|+.||+=|++-+-|+|++
T Consensus 8 ~AheiILefiRSr-ppL~~vs~r-klkp~~~~~~sLHeqLm~eIKq~~kLrpv~ 59 (66)
T 4efh_B 8 DAHAMILEFIRSR-PPLKKASDR-QLGPPRMCEPSPREQLMESIRKGKELKQIT 59 (66)
T ss_pred cHHHHHHHHHhcc-cchhhhhhc-ccCCCCCCcCCHHHHHHHHHhccccCCCCC
Confidence 3579999999994 489998532 23233 34789999999999865566554
No 9
>2vcp_D N-WAsp, neural wiskott-aldrich syndrome protein; actin-binding, transcription, muscle protein, nucleotide-binding, transcription regulation; HET: HIC ATP; 3.2A {Homo sapiens}
Probab=91.61 E-value=0.12 Score=37.03 Aligned_cols=45 Identities=36% Similarity=0.567 Sum_probs=33.3
Q ss_pred HHHHHHhccccccceeccCCCcccccchHHHHHHHHhhcceeeeeeee
Q psy10949 37 QVLRELRRGVQLKKVCHTRNPIEYQMTPYEILMDDIRSRRYKLKQVTV 84 (163)
Q Consensus 37 qVi~ELr~GVKLkKv~~~p~P~Ey~lTPYE~LMdDIR~kRYtLRKV~v 84 (163)
.++.++|.|..||||+.+..|.- -..=.-||++||.= .+|+||.-
T Consensus 17 aLl~~Ir~G~~Lkkv~~~~~p~~--~~~R~dLL~~IR~G-~~LKkv~~ 61 (93)
T 2vcp_D 17 ALLDQIREGAQLKKVEQNSRPVS--CSGRDALLDQIRQG-IQLKSVAD 61 (93)
T ss_pred hhHHHHhcccccCcCCcccCCCC--CCcHHHHHHHHHcc-cccCCCcc
Confidence 46888999999999986655531 22467899999974 58898863
No 10
>2vcp_D N-WAsp, neural wiskott-aldrich syndrome protein; actin-binding, transcription, muscle protein, nucleotide-binding, transcription regulation; HET: HIC ATP; 3.2A {Homo sapiens}
Probab=90.07 E-value=0.51 Score=33.79 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHhcCCCccccccccCCCCCCCCChHHHHHHHhhcCCCCCccCCC
Q psy10949 94 KDAHAIILEFIRSRPPLRKASDRKLPPRQYESTPRERLLEDIKKGSNHRLRHRE 147 (163)
Q Consensus 94 ksAh~iILeFIRSRppL~~vserkLkp~~~~~sLHE~Lm~EIK~~~kLrp~s~~ 147 (163)
-+...-+||.||.-..|++|... -+|. ...-+.-||.+|+++-.|+++...
T Consensus 12 ~~~r~aLl~~Ir~G~~Lkkv~~~-~~p~--~~~~R~dLL~~IR~G~~LKkv~~~ 62 (93)
T 2vcp_D 12 AGNKAALLDQIREGAQLKKVEQN-SRPV--SCSGRDALLDQIRQGIQLKSVADG 62 (93)
T ss_pred CCcchhhHHHHhcccccCcCCcc-cCCC--CCCcHHHHHHHHHcccccCCCccc
Confidence 56677789999998899888643 2332 233489999999999999988754
No 11
>2d1k_C Metastasis suppressor protein 1; WAsp, WIP, WH2, actin, DNAse I, structural protein; HET: HIC NAG BMA ATP; 2.50A {Bos taurus}
Probab=86.15 E-value=0.39 Score=29.52 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=16.6
Q ss_pred HHHHHHhcccccccee--ccCCC
Q psy10949 37 QVLRELRRGVQLKKVC--HTRNP 57 (163)
Q Consensus 37 qVi~ELr~GVKLkKv~--~~p~P 57 (163)
+++.|+++|++|||+. -...|
T Consensus 7 ~LL~~I~kG~kLKKt~TnDrSaP 29 (32)
T 2d1k_C 7 DMLNAIRRGVKLKKTTTNDRSAP 29 (32)
T ss_dssp HHHHHHHHCCCCBCCCCEECCCC
T ss_pred HHHHHHhccCcccceeccccccc
Confidence 5789999999999987 34444
No 12
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=84.91 E-value=0.28 Score=39.18 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=30.9
Q ss_pred cccccccchhhhhhhh------hhccccchhhhHHHHHHHHhccccc
Q psy10949 8 YIMGSLNFQSFYLNKV------VNCAEGGLVRLWIQVLRELRRGVQL 48 (163)
Q Consensus 8 ~~~~~~~~~~~~~~~~------~~l~~~dWarlWvqVi~ELr~GVKL 48 (163)
||--+.+=--||.|+| .+-.+-+|++-|.+++.||+.=||=
T Consensus 111 ~V~e~~dsA~Fy~NrVLke~K~kd~~hveWvka~~~i~~~L~~YVK~ 157 (176)
T 1s0p_A 111 HVAEMRGSAEFYTNRILKEFKGVNQDQVDWVSNYVNFLKDLEKYIKQ 157 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444556999998 3444568999999999999988864
No 13
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=82.62 E-value=0.46 Score=29.11 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=13.7
Q ss_pred HHHHHHhccccccceec
Q psy10949 37 QVLRELRRGVQLKKVCH 53 (163)
Q Consensus 37 qVi~ELr~GVKLkKv~~ 53 (163)
.+|.|+|.||||+.+..
T Consensus 8 KLMEqIRqGVkLr~~~k 24 (31)
T 3m1f_V 8 KLMEQIRQGVKLKSATK 24 (31)
T ss_dssp HHHHHHHHCCCCBCC--
T ss_pred HHHHHHHhhhccccCCC
Confidence 58999999999998763
No 14
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=79.86 E-value=0.73 Score=28.11 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.5
Q ss_pred HHHHHHHhccccccceec
Q psy10949 36 IQVLRELRRGVQLKKVCH 53 (163)
Q Consensus 36 vqVi~ELr~GVKLkKv~~ 53 (163)
..+|.++|.|++||+|+.
T Consensus 6 sdLL~~Ir~G~~Lk~Ve~ 23 (32)
T 2a40_C 6 SDLLSAIRQGFQLRRVEE 23 (32)
T ss_dssp HHHHHHHHHCCCCBCCCC
T ss_pred HHHHHHHHccCCcCCccc
Confidence 368999999999999983
No 15
>2a3z_C WAsp, wiskott-aldrich syndrome protein; WH2, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 2.08A {Bos taurus}
Probab=75.29 E-value=1.4 Score=25.75 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.7
Q ss_pred HHHHHHhccccccceeccCCC
Q psy10949 37 QVLRELRRGVQLKKVCHTRNP 57 (163)
Q Consensus 37 qVi~ELr~GVKLkKv~~~p~P 57 (163)
.+|.+.|.|+.||+|.....+
T Consensus 4 ~Ll~~Ir~G~~Lk~v~~~~~~ 24 (29)
T 2a3z_C 4 ALLDQIRQGIQLNKTPGAPES 24 (29)
T ss_pred hHHHHHhcCCCCCCCcccccc
Confidence 578899999999999855443
No 16
>2a41_C Wiskott-aldrich syndrome protein interacting PROT; WIP, WH2, WAsp, DNAse I, ARP2/3, structural protein; HET: HIC NAG BMA ATP; 2.60A {Bos taurus}
Probab=74.82 E-value=1.6 Score=26.48 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=16.3
Q ss_pred HHHHHHhcccccccee--ccCCC
Q psy10949 37 QVLRELRRGVQLKKVC--HTRNP 57 (163)
Q Consensus 37 qVi~ELr~GVKLkKv~--~~p~P 57 (163)
.++.++++|.+|||+. -...|
T Consensus 7 aLL~~I~~G~~Lkk~~t~DrSaP 29 (32)
T 2a41_C 7 ALLSDISKGKKLKKTVTNDRSAP 29 (32)
T ss_dssp HHHHHHHHCCCCBCCCCEECCSC
T ss_pred HHHHHHHcCCcCCceecccCccc
Confidence 4678899999999988 44455
No 17
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=63.08 E-value=4.9 Score=24.39 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=17.7
Q ss_pred hHHHHHHHhhcCCCCCccCCC
Q psy10949 127 PRERLLEDIKKGSNHRLRHRE 147 (163)
Q Consensus 127 LHE~Lm~EIK~~~kLrp~s~~ 147 (163)
.+.-||++|+++-+|+|+...
T Consensus 4 ~RsdLL~~Ir~G~~Lk~Ve~~ 24 (32)
T 2a40_C 4 ARSDLLSAIRQGFQLRRVEEQ 24 (32)
T ss_dssp HHHHHHHHHHHCCCCBCCCC-
T ss_pred cHHHHHHHHHccCCcCCcccc
Confidence 467899999999999999854
No 18
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.25 E-value=9.9 Score=27.32 Aligned_cols=19 Identities=37% Similarity=0.805 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHhccccccc
Q psy10949 32 VRLWIQVLRELRRGVQLKK 50 (163)
Q Consensus 32 arlWvqVi~ELr~GVKLkK 50 (163)
+.+|-++|..+++||.+|.
T Consensus 11 t~lw~~ii~~~~~g~~ikd 29 (105)
T 2ysr_A 11 TKLWNEVTTSFRAGMPLRK 29 (105)
T ss_dssp HHHHHHHHHHHHHSCSCCC
T ss_pred HHHHHHHHHHHHcCCCcce
Confidence 5799999999999998764
No 19
>2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat protein, crystal P nanotechnology, viral jelly roll, viral protein; 3.90A {Fowl adenovirus 1}
Probab=29.81 E-value=15 Score=36.20 Aligned_cols=29 Identities=41% Similarity=0.563 Sum_probs=25.2
Q ss_pred CCCCCCccc-----------------cccccchhhhhhhhhhcccc
Q psy10949 1 MTPQRPNYI-----------------MGSLNFQSFYLNKVVNCAEG 29 (163)
Q Consensus 1 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~ 29 (163)
|-|.||||| ||+|+=|+==||.|++|+..
T Consensus 283 s~pNRPNYIGFRDNFIGLMYYNSggN~GvLAgQaSQLNaVVDLQDR 328 (942)
T 2iny_A 283 MRACRPNYIGFRDNFINLLYHDSGVCSGTLNSERSGMNVVVELQDR 328 (942)
T ss_dssp CCBCCCBCEECCGGGCSSBCCSCGGGCCCCBCSTTCCBCCCCCSSC
T ss_pred ccCCCCceeeeccCeeeeeEecCCCccccccccccCceEEEecCCC
Confidence 457899998 79999999999999999865
No 20
>3tg7_A Hexon protein, late protein 2; adenovirus structural protein, with NEW finding featuring PO binding to human coagulation factor X; 1.57A {Human adenovirus 5} PDB: 2bvi_F 1p30_A 1vsz_A 3iyn_A 1p2z_A* 2obe_A
Probab=29.75 E-value=10 Score=37.36 Aligned_cols=29 Identities=48% Similarity=0.691 Sum_probs=24.9
Q ss_pred CCCCCccc-----------------cccccchhhhhhhhhhccccc
Q psy10949 2 TPQRPNYI-----------------MGSLNFQSFYLNKVVNCAEGG 30 (163)
Q Consensus 2 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~d 30 (163)
-|.||||| ||.|+=|.==||.|++|+-..
T Consensus 319 mPNRPNYIGFRDNFIGLMYYNStgNmGvLAgQaSQLNaVVDLQDRN 364 (951)
T 3tg7_A 319 MPNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRN 364 (951)
T ss_dssp EECCCBCEEECGGGTTSBCCSCGGGCCEEEETTSCCCSCCCCTTCC
T ss_pred cCCCCceeeeccceeeeeEecCCCcccccccccccceEEEecccCc
Confidence 37899998 899999999999999998543
No 21
>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.61A {Agrobacterium tumefaciens str} SCOP: d.268.1.3
Probab=28.49 E-value=14 Score=30.07 Aligned_cols=89 Identities=18% Similarity=0.090 Sum_probs=54.0
Q ss_pred hhhhhhhhccccchhhhHHHHHHHHhccccccceeccCCCcccccchH--HHHHHHH-hhcceeeeeeeeCCCCCccccc
Q psy10949 18 FYLNKVVNCAEGGLVRLWIQVLRELRRGVQLKKVCHTRNPIEYQMTPY--EILMDDI-RSRRYKLKQVTVDGSIPPRVKK 94 (163)
Q Consensus 18 ~~~~~~~~l~~~dWarlWvqVi~ELr~GVKLkKv~~~p~P~Ey~lTPY--E~LMdDI-R~kRYtLRKV~v~g~iPprvkk 94 (163)
-+..-+.++..-+++.|| +.|.+- +=|-|+...-+ |..++-.|= .-|-||. ||-=|.+|+. .|.-.+. .
T Consensus 83 v~v~Vi~dls~l~~~~FW-~~M~~~-~w~~~~D~~G~--~~~~~~LP~~l~~l~DDpyRSLa~~~R~~--Ggy~k~~--~ 154 (205)
T 2hwj_A 83 VLTSEVAKFSHLGKDEFW-SVMDHR-NLIYPFDAQGL--RRQSGDIPKNIHDLEDDPFRSLAGALRMA--GGYAKVI--I 154 (205)
T ss_dssp EEEEEEEECTTSCHHHHH-HHHHHT-TCCBCBCTTCC--BCCGGGSCSSGGGCEECHHHHHHHHHHHH--TSSCCCS--S
T ss_pred EEEEEeeccCCCCHHHHH-HHHHHC-CCccccCCCcC--CCChHHcchhHHhCCCCchHHHHHHHHHc--CCccCCC--C
Confidence 444556677788899999 555542 33455554422 233333333 3466777 8887888876 1222222 4
Q ss_pred cHHHHH-HHHHhcCCCccccc
Q psy10949 95 DAHAII-LEFIRSRPPLRKAS 114 (163)
Q Consensus 95 sAh~iI-LeFIRSRppL~~vs 114 (163)
.-+|+. -+|+|+++++.+.+
T Consensus 155 pf~EF~Wa~~lR~~~~~~~~~ 175 (205)
T 2hwj_A 155 PFSEFGWADFLRRRIDRDLLS 175 (205)
T ss_dssp TTHHHHHHHHHHTTSCHHHHH
T ss_pred cceeecHHHHHHHhCCCCcch
Confidence 457776 78999999887775
No 22
>1ft5_A Cytochrome C554; heme-stacking, electron transport; HET: HEM; 1.60A {Nitrosomonas europaea} SCOP: a.138.1.3 PDB: 1bvb_A* 1ft6_A*
Probab=23.31 E-value=27 Score=27.60 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=22.1
Q ss_pred ccccchHHHHHH--------------HHhhcceeeeeeeeCCCCC
Q psy10949 59 EYQMTPYEILMD--------------DIRSRRYKLKQVTVDGSIP 89 (163)
Q Consensus 59 Ey~lTPYE~LMd--------------DIR~kRYtLRKV~v~g~iP 89 (163)
.+..+||..+.| .+=+-+|+||+|++.|-++
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~h~~~~l~~~~~~~~~~ 194 (211)
T 1ft5_A 150 KAPYTPFTPEVDAKYTFKFDEMVKEVKAMHEHYKLEGVFEGEPKF 194 (211)
T ss_dssp CSSCCSCCTTTCGGGCCCHHHHTTCTTTSCCCBCCCCCEESSSCC
T ss_pred CcccCCCCcccccccccccccccccchhccccceeeeeecCCccH
Confidence 566677776654 2557899999999977443
Done!