Query psy10949
Match_columns 163
No_of_seqs 44 out of 46
Neff 2.8
Searched_HMMs 13730
Date Fri Aug 16 22:37:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10949.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10949hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s0pa_ a.192.1.1 (A:) N-termi 72.8 0.54 3.9E-05 35.7 1.2 31 17-47 120-156 (176)
2 d1nkta2 a.172.1.1 (A:616-835) 68.4 0.54 3.9E-05 34.7 0.2 41 33-74 162-209 (220)
3 d1tf5a2 a.172.1.1 (A:571-780) 46.9 2.9 0.00021 30.3 1.0 41 33-74 152-199 (210)
4 d1p2za1 b.121.2.2 (A:5-650) Ad 32.6 4.3 0.00031 36.3 -0.1 28 3-30 328-372 (646)
5 d2jeka1 a.255.1.1 (A:6-145) Hy 21.5 17 0.0013 26.5 1.6 26 18-47 3-28 (140)
6 d2fswa1 a.4.5.69 (A:3-104) Hyp 14.7 28 0.002 22.9 1.2 29 37-66 53-84 (102)
7 d1s1ta1 c.55.3.1 (A:430-539) H 10.9 56 0.0041 21.3 1.8 28 17-44 70-98 (110)
8 g1avo.1 a.24.8.1 (A:,B:) Prote 10.4 45 0.0033 25.2 1.3 27 19-46 155-181 (200)
9 d1fafa_ a.2.3.1 (A:) Large T a 10.2 49 0.0036 21.0 1.3 17 63-79 57-73 (79)
10 d2hzta1 a.4.5.69 (A:4-98) Puta 10.0 66 0.0048 20.6 1.9 31 35-66 42-75 (95)
No 1
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=72.85 E-value=0.54 Score=35.67 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=25.1
Q ss_pred hhhhhhh-h-----hccccchhhhHHHHHHHHhcccc
Q psy10949 17 SFYLNKV-V-----NCAEGGLVRLWIQVLRELRRGVQ 47 (163)
Q Consensus 17 ~~~~~~~-~-----~l~~~dWarlWvqVi~ELr~GVK 47 (163)
-||.|+| . +-.+.+|++-|.+++.+|+.=||
T Consensus 120 ~Fy~NrVLke~K~kD~~hveWvka~~~~l~~L~~YVk 156 (176)
T d1s0pa_ 120 EFYTNRILKEFKGVNQDQVDWVSNYVNFLKDLEKYIK 156 (176)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999995 3 34566899999999999997665
No 2
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=68.42 E-value=0.54 Score=34.73 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=31.9
Q ss_pred hhHH---HHHHHHhcccccccee-ccCCCcccccchH---HHHHHHHhh
Q psy10949 33 RLWI---QVLRELRRGVQLKKVC-HTRNPIEYQMTPY---EILMDDIRS 74 (163)
Q Consensus 33 rlWv---qVi~ELr~GVKLkKv~-~~p~P~Ey~lTPY---E~LMdDIR~ 74 (163)
..|. +-|+.||.||-|+.-. .+|+ +||..--| +.+|++||.
T Consensus 162 ~~W~eHL~~Md~LR~gI~LR~ygQkDPl-~EYK~Eaf~lF~~m~~~i~~ 209 (220)
T d1nkta2 162 RKWREHLYEMDYLKEGIGLRAMAQRDPL-VEYQREGYDMFMAMLDGMKE 209 (220)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCBTTBCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHccCChH-HHHHHHHHHHHHHHHHHHHH
Confidence 4565 4688999999999988 6665 79987655 578999986
No 3
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=46.93 E-value=2.9 Score=30.31 Aligned_cols=41 Identities=27% Similarity=0.626 Sum_probs=31.1
Q ss_pred hhHH---HHHHHHhcccccccee-ccCCCcccccch---HHHHHHHHhh
Q psy10949 33 RLWI---QVLRELRRGVQLKKVC-HTRNPIEYQMTP---YEILMDDIRS 74 (163)
Q Consensus 33 rlWv---qVi~ELr~GVKLkKv~-~~p~P~Ey~lTP---YE~LMdDIR~ 74 (163)
..|. +-|..||.||-|+-.. .+|+ +||..-- |+.++++||.
T Consensus 152 ~~W~~HL~~Md~LR~~I~lR~ygQkDPl-~EYk~Eaf~lF~~m~~~i~~ 199 (210)
T d1tf5a2 152 SKWMDHIDAMDQLRQGIHLRAYAQTNPL-REYQMEGFAMFEHMIESIED 199 (210)
T ss_dssp HHHHHHHHHHHHHHHTGGGTSCSSSCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3564 4678999999999988 5554 7998655 4578888875
No 4
>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]}
Probab=32.65 E-value=4.3 Score=36.33 Aligned_cols=28 Identities=50% Similarity=0.723 Sum_probs=23.2
Q ss_pred CCCCccc-----------------cccccchhhhhhhhhhccccc
Q psy10949 3 PQRPNYI-----------------MGSLNFQSFYLNKVVNCAEGG 30 (163)
Q Consensus 3 ~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~d 30 (163)
|.||||| ||.|+=|.==||-|++|+-..
T Consensus 328 pNRPNYIGFRDNFIGLMYYNSggN~GvLagQaSQLNaVVDLQDRN 372 (646)
T d1p2za1 328 PNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRN 372 (646)
T ss_dssp ECCCBCEEECGGGTTTBCCSCGGGCCEEEETTTCSBSCCCCTTCC
T ss_pred CCCCceeeecccccceeEecCCCccceecccccCCeEEEecCCCc
Confidence 4699998 788888999999999887543
No 5
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.45 E-value=17 Score=26.49 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=18.1
Q ss_pred hhhhhhhhccccchhhhHHHHHHHHhcccc
Q psy10949 18 FYLNKVVNCAEGGLVRLWIQVLRELRRGVQ 47 (163)
Q Consensus 18 ~~~~~~~~l~~~dWarlWvqVi~ELr~GVK 47 (163)
|.|+..++-++ ..|.+|+.||++|=|
T Consensus 3 ~~L~RFv~AQ~----~~y~~al~EL~~G~K 28 (140)
T d2jeka1 3 FDLKRFVYAQA----PVYRSVVEELRAGRK 28 (140)
T ss_dssp TCTHHHHHHHT----TTHHHHHHHHHTTCC
T ss_pred chHHHHHHHhH----hhHHHHHHHHHcCCC
Confidence 34455454444 468899999999965
No 6
>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}
Probab=14.67 E-value=28 Score=22.94 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=17.4
Q ss_pred HHHHHHh-ccccccceeccCCC--cccccchHH
Q psy10949 37 QVLRELR-RGVQLKKVCHTRNP--IEYQMTPYE 66 (163)
Q Consensus 37 qVi~ELr-~GVKLkKv~~~p~P--~Ey~lTPYE 66 (163)
+-++||. +|+--|.+ ++..| +||.||+.-
T Consensus 53 ~rLkeL~~~glv~r~~-~~~~p~~veY~LT~~G 84 (102)
T d2fswa1 53 DELKFLCGKGLIKKKQ-YPEVPPRVEYSLTPLG 84 (102)
T ss_dssp HHHHHHHHTTSEEEEE-ECSSSCEEEEEECHHH
T ss_pred HHHHHHHHCCceeecc-cCCCCCeehhhhhHhH
Confidence 4455554 45544444 33333 799999975
No 7
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=10.86 E-value=56 Score=21.31 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=20.0
Q ss_pred hhhhhhhhhccccch-hhhHHHHHHHHhc
Q psy10949 17 SFYLNKVVNCAEGGL-VRLWIQVLRELRR 44 (163)
Q Consensus 17 ~~~~~~~~~l~~~dW-arlWvqVi~ELr~ 44 (163)
|-|+.+..+.....| ..+|.+++.+|..
T Consensus 70 S~yvi~~i~~~~~~~~~~l~~~il~~l~~ 98 (110)
T d1s1ta1 70 SQYALGIIQAQPDQSESELVNQIIEQLIK 98 (110)
T ss_dssp CHHHHHHHHHCCSEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCccccchHHHHHHHHHHhc
Confidence 556655555555666 7899999998875
No 8
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.43 E-value=45 Score=25.17 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=22.7
Q ss_pred hhhhhhhccccchhhhHHHHHHHHhccc
Q psy10949 19 YLNKVVNCAEGGLVRLWIQVLRELRRGV 46 (163)
Q Consensus 19 ~~~~~~~l~~~dWarlWvqVi~ELr~GV 46 (163)
|...|.+++.++|-++| .+++|+||..
T Consensus 155 Yr~~v~e~Dek~y~~lr-~~v~eiRn~Y 181 (200)
T g1avo.1 155 YRQLVHELDEAEYRDIR-LMVMEIRNAY 181 (200)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 56678889999999999 7889999863
No 9
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=10.19 E-value=49 Score=20.96 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=14.5
Q ss_pred chHHHHHHHHhhcceee
Q psy10949 63 TPYEILMDDIRSRRYKL 79 (163)
Q Consensus 63 TPYE~LMdDIR~kRYtL 79 (163)
.-|+.|.|+++..||.+
T Consensus 57 ~Ay~~L~d~~~r~~~~~ 73 (79)
T d1fafa_ 57 SLWGTFKTEVYNLRMNL 73 (79)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCHHHHHHHcc
Confidence 36999999999999964
No 10
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=9.96 E-value=66 Score=20.63 Aligned_cols=31 Identities=35% Similarity=0.639 Sum_probs=18.6
Q ss_pred HHHHHHHHh-ccccccceeccCCC--cccccchHH
Q psy10949 35 WIQVLRELR-RGVQLKKVCHTRNP--IEYQMTPYE 66 (163)
Q Consensus 35 WvqVi~ELr-~GVKLkKv~~~p~P--~Ey~lTPYE 66 (163)
=.+-++||. +|+--| ..++..| +||.||+.-
T Consensus 42 Ls~rLk~Le~~glv~r-~~~~~~p~~veY~LT~~G 75 (95)
T d2hzta1 42 LTQQLRELEADGVINR-IVYNQVPPKVEYELSEYG 75 (95)
T ss_dssp HHHHHHHHHHTTSEEE-EEECSSSCEEEEEECTTG
T ss_pred HHHHHHHHHHhHHHhh-eeccccccchhhhhhhhH
Confidence 345566664 566443 3344444 799999864
Done!