RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10949
(163 letters)
>4efh_B Protein spire; cytoskeleton, contractIle protein, contractIle
protein-trans protein complex; HET: ADP; 2.48A
{Drosophila melanogaster} PDB: 3ue5_B*
Length = 66
Score = 56.0 bits (134), Expect = 1e-11
Identities = 36/55 (65%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 89 PPRVKKDAHAIILEFIRSRPPLRKASDRKL-PPRQYESTPRERLLEDIKKGSNHR 142
P KKDAHA+ILEFIRSRPPL+KASDR+L PPR E +PRE+L+E I+KG +
Sbjct: 2 PLGSKKDAHAMILEFIRSRPPLKKASDRQLGPPRMCEPSPREQLMESIRKGKELK 56
>3mn7_S Spire DDD; WH2 domain, actin complex, contractIle protein-protei
complex; HET: ATP; 2.00A {Drosophila melanogaster}
Length = 98
Score = 46.0 bits (108), Expect = 2e-07
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 26/89 (29%)
Query: 63 TPYEILMDDIRSRRYKLKQVTVDGSIPPRVKKDAHAIILEFIRSRPPLRKASDRKL-PPR 121
+P E LM+ IR + E +SRPPL+KASDR+L PPR
Sbjct: 2 SPREQLMESIRKGK-------------------------ELKQSRPPLKKASDRQLGPPR 36
Query: 122 QYESTPRERLLEDIKKGSNHRLRHRESRP 150
E +PRE+L+E I+KG + +
Sbjct: 37 MCEPSPREQLMESIRKGKELKQSRPPLKK 65
Score = 26.4 bits (57), Expect = 2.3
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 26/87 (29%)
Query: 57 PIEYQMTPYEILMDDIRSRRYKLKQVTVDGSIPPRVKKDAHAIILEFIRSRPPLRKASDR 116
P + +P E LM+ IR + +LKQ RPPL+KASDR
Sbjct: 35 PRMCEPSPREQLMESIRKGK-ELKQS------------------------RPPLKKASDR 69
Query: 117 KL-PPRQYESTPRERLLEDIKKGSNHR 142
+L PPR E +PRE+L+E I+KG +
Sbjct: 70 QLGPPRMCEPSPREQLMESIRKGKELK 96
>2vcp_D N-WAsp, neural wiskott-aldrich syndrome protein; actin-binding,
transcription, muscle protein, nucleotide-binding,
transcription regulation; HET: HIC ATP; 3.2A {Homo
sapiens}
Length = 93
Score = 34.5 bits (78), Expect = 0.003
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 85 DGSIPPRVKKDAHAIILEFIRSRPPLRKASDRKLPPRQYESTPRERLLEDIKKGSNHRLR 144
DG A +L+ IR L+K P + R+ LL+ I++G +L+
Sbjct: 3 DGDHQVPTTAGNKAALLDQIREGAQLKKVEQNSRPVS---CSGRDALLDQIRQG--IQLK 57
Query: 145 HRESRPDRTARK 156
+ T
Sbjct: 58 SVADGQESTPPT 69
Score = 28.3 bits (62), Expect = 0.49
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 37 QVLRELRRGVQLKKVCHTRNPIEYQMTPYEILMDDIRSRRYKLKQVTVDGSIPPRVKKDA 96
+L ++R G QLKKV P+ + + L+D IR +LK V P
Sbjct: 17 ALLDQIREGAQLKKVEQNSRPV--SCSGRDALLDQIRQGI-QLKSVADGQESTPPTPAPT 73
Query: 97 HAII 100
I+
Sbjct: 74 SGIV 77
>3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer,
ATP-binding, actin cytoskeleton, methylation, M protein,
actin-binding, motor protein; HET: HIC ATP; 7.00A {Mus
musculus}
Length = 101
Score = 31.3 bits (70), Expect = 0.045
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 39 LRELRRGVQLKKVCHTRNPIEYQMTPYEILMDDIRSRRYKLKQVTVDGSIPPRVKKDAHA 98
L ++R G QLKKV P+ + + L+D IR +LK+V + +DA
Sbjct: 10 LDQIREGAQLKKVEQNSRPVS--ASGRDALLDQIRQGI-QLKKVEQNSRPVSASGRDA-- 64
Query: 99 IILEFIRSRPPLRKASDRKLPPRQYESTPRER 130
+L+ IR L+K ++ P + T +
Sbjct: 65 -LLDQIRQGIQLKKTETQEKNPLPSKETIEQE 95
Score = 25.9 bits (56), Expect = 3.2
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 98 AIILEFIRSRPPLRKASDRKLPPRQYESTPRERLLEDIKKGSNHRLRHRESRPDRTA 154
A +L+ IR L+K P ++ R+ LL+ I++G + + SRP +
Sbjct: 7 AALLDQIREGAQLKKVEQNSRPV---SASGRDALLDQIRQGIQLKKVEQNSRPVSAS 60
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.062
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 17/112 (15%)
Query: 15 FQSFY-LNKVVNCAEGGLVRLWIQVLRELRRGVQLKKVCHTRNPIEYQMTPYEILMDDIR 73
F + L +W V++ V + K H + +E +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNK-LHKYSLVE----------KQPK 422
Query: 74 SRRYKLKQVTVDGSIPPRVKKDAHAIILEFIRSRPPLRKASDRKLPPR--QY 123
+ + ++ + + H I++ P SD +PP QY
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQY 472
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct
genomics, joint center for structural genomics, JCSG;
HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Length = 377
Score = 30.2 bits (69), Expect = 0.28
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 17 SFYLNKVVNCAEGGLV 32
SF+ K EGGL+
Sbjct: 186 SFHATKPFGIGEGGLI 201
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 30.2 bits (69), Expect = 0.30
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 17 SFYLNKVVNCAEGGLV 32
SF+ K VN EGG V
Sbjct: 195 SFHATKAVNAFEGGAV 210
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin
complex, contractIle protein-protei complex; HET: ATP
LAB; 1.50A {Drosophila melanogaster}
Length = 38
Score = 27.6 bits (60), Expect = 0.33
Identities = 17/28 (60%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 113 ASDRKL-PPRQYESTPRERLLEDIKKGS 139
ASDR+L PPR E +PRE+L+E I+KG
Sbjct: 1 ASDRQLGPPRMCEPSPREQLMESIRKGK 28
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 27.6 bits (62), Expect = 2.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 17 SFYLNKVVNCAEGGLV 32
SFY K + EGG V
Sbjct: 215 SFYPAKHITMGEGGAV 230
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 27.1 bits (61), Expect = 2.6
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 10/48 (20%)
Query: 82 VTVDGSIPPRVKKDAHAIILEFIR----------SRPPLRKASDRKLP 119
+ + GS+PP VK + ++ + S L A
Sbjct: 134 LVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNI 181
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 27.1 bits (61), Expect = 2.7
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 10/42 (23%)
Query: 82 VTVDGSIPPRVKKDAHAIILEFIR----------SRPPLRKA 113
+ + GS+P + + + + + + S L +
Sbjct: 129 LVLAGSVPQAMPQTIYRSMTQIAKERGAFVAVDTSGEALHEV 170
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION,
PSI-II, NYSGXRC, kinase, structural genomics, structure
initiative; HET: ATP; 1.60A {Listeria innocua} PDB:
3hic_A* 3jul_A* 3q1y_A
Length = 320
Score = 26.8 bits (60), Expect = 3.2
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 10/42 (23%)
Query: 82 VTVDGSIPPRVKKDAHAIILEFIR----------SRPPLRKA 113
V + GS PP +L ++ S L A
Sbjct: 137 VVIAGSPPPHYTLSDFKELLRTVKATGAFLGCDNSGEYLNLA 178
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 26.8 bits (60), Expect = 3.7
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 82 VTVDGSIPPRVKKDAHAIILEFIR----------SRPPLRKASDRKLPP 120
VT+ GS+ + D + +++ S LR+ P
Sbjct: 133 VTISGSLAKGLPSDFYQELVQKAHAQEVKVLLDTSGDSLRQVLQGPWKP 181
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase);
rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A
{Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Length = 388
Score = 26.8 bits (60), Expect = 4.2
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 17 SFYLNKVVNCAEGGLV-----RLWIQVLRELR 43
SF K++ EGG V +
Sbjct: 183 SFQNGKLMTAGEGGAVVFPDGETE-KYETAFL 213
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 26.7 bits (60), Expect = 4.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 17 SFYLNKVVNCAEGGLV 32
SF+ K + AEGG V
Sbjct: 178 SFHAIKPITTAEGGAV 193
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP;
1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 26.3 bits (59), Expect = 4.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 17 SFYLNKVVNCAEGGLV 32
SF+ K + CAEGG+V
Sbjct: 183 SFHAIKNITCAEGGIV 198
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin,
aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus
circulans} PDB: 2c7t_A*
Length = 418
Score = 26.1 bits (58), Expect = 6.3
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 17 SFYLNKVVNCAEGGLV 32
S KV+ EGG++
Sbjct: 187 SCQQGKVLTAGEGGII 202
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 26.0 bits (58), Expect = 6.4
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 17 SFYLNKVVNCAEGGLV 32
S + + + EGG +
Sbjct: 185 SSFYSNHIATMEGGCI 200
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism,
ATP-binding, ligase, nucleotide-binding, biosynthesis;
HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Length = 725
Score = 26.1 bits (58), Expect = 6.6
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 46 VQLKKVCHTRNPIEYQMTPYEILM 69
+ L V TR E MTP E+L+
Sbjct: 282 LHLDLV-PTR---EEGMTPEELLL 301
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate,
aspartate aminotransferase, O-antigen; HET: G4M; 1.60A
{Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Length = 391
Score = 25.9 bits (58), Expect = 6.6
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 17 SFYLNKVVNCAEGGLV 32
SF+ N ++ EGG++
Sbjct: 201 SFFGNAIITTGEGGMI 216
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center
for structural genomics, PSI, protein structure
initiative; 2.40A {Bordetella pertussis tohama I} SCOP:
a.7.13.1
Length = 100
Score = 25.2 bits (55), Expect = 7.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 20 LNKVVNCAEGGLVRLWIQVLRELRRGVQLKKVCHTR-NPIEYQMTPYEILMDD 71
L +V+ E G + L Q L RRGV+L +VC R E Q+ ++L D
Sbjct: 39 LESLVSAMENGTLPL-EQSLSAYRRGVELARVCQDRLAQAEQQV---KVLEGD 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.409
Gapped
Lambda K H
0.267 0.0495 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,571,624
Number of extensions: 148840
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 28
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)