RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10949
         (163 letters)



>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
           2 [TaxId: 10515]}
          Length = 646

 Score = 26.6 bits (59), Expect = 1.8
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 17/39 (43%)

Query: 3   PQRPNYI-----------------MGSLNFQSFYLNKVV 24
           P RPNYI                 MG L  Q+  LN VV
Sbjct: 328 PNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQLNAVV 366


>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
           [TaxId: 90371]}
          Length = 376

 Score = 24.9 bits (53), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 16  QSFYLNKVVNCAEGGLVRLWIQ 37
            SF+  K + CAEGG+V     
Sbjct: 174 FSFHAIKNITCAEGGIVVTDNP 195


>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB
          {Bordetella pertussis [TaxId: 520]}
          Length = 68

 Score = 23.1 bits (50), Expect = 8.8
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 20 LNKVVNCAEGGLVRLWIQVLRELRRGVQLKKVCHTR-NPIEYQMTPYEILMDD 71
          L  +V+  E G + L  Q L   RRGV+L +VC  R    E Q+   ++L  D
Sbjct: 15 LESLVSAMENGTLPL-EQSLSAYRRGVELARVCQDRLAQAEQQV---KVLEGD 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 633,893
Number of extensions: 30183
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 7
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)