BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1095
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 125/295 (42%), Gaps = 51/295 (17%)
Query: 66 PRFYAVPHNKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
P ++ P + +G+ + QC V G P +W K+ ++ K ++ L
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
I++V D G YT K EN+ G+V ++A L I + + P L+++ G V F
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL---PPSFARKLKDVHETLGFPVAF 121
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
EC++ P +SW+++ L+K D++++ + + L I + HV G++
Sbjct: 122 ECRINGSEP--LQVSWYKDGELLKDDANLQTSF-IHNVATLQILQTDQSHV-----GQYN 173
Query: 245 CRVANELGEVVTSACLI----------------VDVVKG--------------------- 267
C +N LG +SA L VD+ G
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK 233
Query: 268 --KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+++ G + V T+ LT+ +T D+G+Y + SN G DSC A + V+
Sbjct: 234 DNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 130/311 (41%), Gaps = 56/311 (18%)
Query: 53 LNSAIRTRRLTSS-----PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT 107
L +A + +LT S P F P + LG++ F+C VTG +W+KD +
Sbjct: 180 LGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR 239
Query: 108 PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
P + E+ L + +VT DAG YT N G +A+L + +P P+
Sbjct: 240 PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------PRF 293
Query: 168 LNGLENLRCCDGDSVT-FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
+ LE R D T +EC++ P + + W+++ I+ S + V+S
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIGGSP--EIKVLWYKDETEIQESSKFRMSF-VES----- 345
Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI-------------VDVVKGKD---- 269
+A L++ ++ ED G++TC N G +S L V+ +KG D
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 405
Query: 270 -------------------LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS 310
L S + I++ + + I ++ D G+YQ SN GS
Sbjct: 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 465
Query: 311 DSCYASVAVEG 321
D+C S+ ++
Sbjct: 466 DTCVGSITLKA 476
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 58/295 (19%)
Query: 66 PRFYA-VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
PRF + ++I + R++C + G P W KD +++ + E + LE
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE 350
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
+ +++ED+G YT + N GS ++ L++ +P +P + L+ G V
Sbjct: 351 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK------GADVHL 404
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
EC++Q PP +SW ++ R +L S K ++ EN + + + I +V D GE+
Sbjct: 405 ECELQGTPP--FQVSWHKDKR--ELRSGKKYKIM---SENFLTS-IHILNVDSADIGEYQ 456
Query: 245 CRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDD-------- 296
C+ +N++G + C+ +K +I TV G V I G +
Sbjct: 457 CKASNDVG---SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK 513
Query: 297 --------------------------------SGKYQVHVSNQHGSDSCYASVAV 319
+GKY + N+ G+ C+A+++V
Sbjct: 514 DKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 13/192 (6%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
++ P F PH G V +C + G P SW KD + + I + L
Sbjct: 380 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 439
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
+ I V D G Y K N+ GS + + P P+ + L ++ G+
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP------PRFVKKLSDISTVVGE 493
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
V + ++ P ++WF++ I +SD + + EN IA L+ P +
Sbjct: 494 EVQLQATIEGAEPI--SVAWFKDKGEIVRESD---NIWISYSEN--IATLQFSRAEPANA 546
Query: 241 GEFTCRVANELG 252
G++TC++ NE G
Sbjct: 547 GKYTCQIKNEAG 558
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD-GKPATPNARVTIREKEDL 120
L + PRF + +G+ V+ Q ++ G +W KD G+ + + I E++
Sbjct: 474 LKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENI 533
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
L+ S +AG YT +++N G+ E A L +++
Sbjct: 534 ATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEI 125
+ +AVP K TV+F+C +G P P W K+GK P+ R+ + + + +
Sbjct: 25 KLHAVPAAK------TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 78
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTF 184
V D G YT VEN YGS+ T +L++++ RP + GL N G +V F
Sbjct: 79 DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSP--HRPILQAGLPANKTVALGSNVEF 136
Query: 185 ECQVQVVPPNDHDISWFRNNRL--IKLDSDMKPEVQV--DSKENLVIARLKIPH---VYP 237
C+V P I W ++ + K+ D P VQ+ + N +++ H V
Sbjct: 137 MCKVYSDP--QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 194
Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
ED GE+TC N +G SA L V
Sbjct: 195 EDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 70 AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK----DGKPATPN----------ARVTIR 115
+P NK LG V F C V P P W K +G P+ A V
Sbjct: 121 GLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTT 180
Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
+KE + L + V+ EDAG YT N+ G +A L +++
Sbjct: 181 DKE-MEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 221
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEI 125
+ +AVP K TV+F+C +G P P W K+GK P+ R+ + + + +
Sbjct: 24 KLHAVPAAK------TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 77
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTF 184
V D G YT VEN YGS+ T +L++++ RP + GL N G +V F
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSP--HRPILQAGLPANKTVALGSNVEF 135
Query: 185 ECQVQVVPPNDHDISWFRNNRL--IKLDSDMKPEVQV--DSKENLVIARLKIPH---VYP 237
C+V P I W ++ + K+ D P VQ+ + N +++ H V
Sbjct: 136 MCKVYSDP--QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 193
Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
ED GE+TC N +G SA L V
Sbjct: 194 EDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 70 AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK----DGKPATPN----------ARVTIR 115
+P NK LG V F C V P P W K +G P+ A V
Sbjct: 120 GLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTT 179
Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
+KE + L + V+ EDAG YT N+ G +A L +++
Sbjct: 180 DKE-MEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEI 125
+ +AVP K TV+F+C +G P P W K+GK P+ R+ + + + +
Sbjct: 24 KLHAVPAAK------TVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 77
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTF 184
V D G YT VEN YGS+ T +L++++ RP + GL N G +V F
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSP--HRPILQAGLPANKTVALGSNVEF 135
Query: 185 ECQVQVVPPNDHDISWFRNNRL--IKLDSDMKPEVQV--DSKENLVIARLKIPH---VYP 237
C+V P I W ++ + K+ D P VQ+ + N +++ H V
Sbjct: 136 MCKVYSDP--QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 193
Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
ED GE+TC N +G SA L V
Sbjct: 194 EDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 70 AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK----DGKPATPN----------ARVTIR 115
+P NK LG V F C V P P W K +G P+ A V
Sbjct: 120 GLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTT 179
Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
+KE + L + V+ EDAG YT N+ G +A L +++
Sbjct: 180 DKE-MEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 25/222 (11%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
PY N+ +RL + P F +TV+F+C G P P W K+GK
Sbjct: 15 APYWTNTEKMEKRLHAVPAF------------NTVKFRCPAGGNPMPTMRWLKNGKEFKQ 62
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
R+ + + + I E V D G YT VEN YGS+ T L++++ RP +
Sbjct: 63 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 120
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
GL N G V F C+V P+ I W ++ K D P ++V
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 224 NLVIAR---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ + L + +V D GE+ C+V+N +G+ SA L V
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 13/191 (6%)
Query: 81 DTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTIK 139
+TVRF+C G P P SW K+G+ R+ I+ + L + V D G YT
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 198
Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTFECQVQVVPPNDHDI 198
VEN +GS+ T L++++ RP + GL N G V F C +V I
Sbjct: 199 VENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHC--KVYSDAQPHI 254
Query: 199 SWFRNNRL--IKLDSDMKPEVQV-----DSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251
W ++ + K+ D P V V + + + L + +V ED GE+TC N +
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Query: 252 GEVVTSACLIV 262
G SA L+V
Sbjct: 315 GFSHHSAWLVV 325
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 70 AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-----------DGKP-----ATPNARVT 113
+P N+ LG V F C V P W K DG P T A T
Sbjct: 227 GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTT 286
Query: 114 IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
+E L L + VT EDAG YT N+ G +A L ++
Sbjct: 287 DKE---LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 80 GDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY-- 136
GD V C G T W KDG P+ RV + + L++ + ED+G Y
Sbjct: 23 GDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQR----LQVLNASHEDSGAYSC 78
Query: 137 ------------TIKVENNYGSVEATARLEIMDPRAI------ISRPKVLNGLENLRCCD 178
+++V + S + + + + +RP+ ++ + L
Sbjct: 79 RQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDK-KLLAVPA 137
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
++V F C P ISW +N R + + + + +LV+ V P
Sbjct: 138 ANTVRFRCPAAGNP--TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMES-----VVPS 190
Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
D G +TC V N+ G + + L V
Sbjct: 191 DRGNYTCVVENKFGSIRQTYTLDV 214
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 97/222 (43%), Gaps = 25/222 (11%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 14 APYWTNTEKXEKRL------HAVP------AANTVKFRCPAGGNPXPTXRWLKNGKEFKQ 61
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
R+ + + + I E V D G YT VEN YGS+ T L++++ RP +
Sbjct: 62 EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 119
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
GL N G V F C+V P+ I W ++ K D P ++V
Sbjct: 120 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKHS 176
Query: 224 NLVIAR---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ + L + +V D GE+ C+V+N +G+ SA L V
Sbjct: 177 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 7 APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 54
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
R+ + + + I E V D G YT VEN YGS+ T L++++ RP +
Sbjct: 55 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 112
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
GL N G V F C+V P+ I W ++ K D P ++V
Sbjct: 113 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
+ I L I +V ED GE+TC N +G SA L V G++
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 220
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 6 APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 53
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
R+ + + + I E V D G YT VEN YGS+ T L++++ RP +
Sbjct: 54 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 111
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
GL N G V F C+V P+ I W ++ K D P ++V
Sbjct: 112 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 168
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
+ I L I +V ED GE+TC N +G SA L V G++
Sbjct: 169 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 219
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 7 APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 54
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
R+ + + + I E V D G YT VEN YGS+ T L++++ RP +
Sbjct: 55 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRPIL 112
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
GL N G V F C+V P+ I W ++ K D P ++V
Sbjct: 113 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
+ I L I +V ED GE+TC N +G SA L V G++
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 220
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 5 APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 52
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
R+ + + + I E V D G YT VEN YGS+ T L++++ RP +
Sbjct: 53 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRPIL 110
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
GL N G V F C+V P+ I W ++ K D P ++V
Sbjct: 111 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 167
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
+ I L I +V ED GE+TC N +G SA L V G++
Sbjct: 168 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 218
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR--VTIREKEDL 120
T +P F + + G T F+ ++G P P SW +DG+ + + V I +
Sbjct: 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
L I VT ++G Y++K N G +TA L + +A + P + L+++ G
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQGS 119
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
V + +V +P + ++R+ I+ D Q+ + +L L I YPED
Sbjct: 120 QVRLQVRVTGIP--TPVVKFYRDGAEIQSSLDF----QISQEGDLY--SLLIAEAYPEDS 171
Query: 241 GEFTCRVANELGEVVTSACLIVD 263
G ++ N +G ++A L+V
Sbjct: 172 GTYSVNATNSVGRATSTAELLVQ 194
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 7 APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 54
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
R+ + + + I E V D G YT VEN YGS+ T L++++ RP +
Sbjct: 55 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE--RWPHRPIL 112
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
GL N G V F C+V P+ I W ++ K D P ++V
Sbjct: 113 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
+ I L I +V ED GE+TC N +G SA L V G++
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE 220
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 7 APYWTNTEKXEKRL------HAVP------AANTVKFRCPAGGNPXPTXRWLKNGKEFKQ 54
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
R+ + + + I E V D G YT VEN YGS+ T L++++ RP +
Sbjct: 55 EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP--HRPIL 112
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
GL N G V F C+V P+ I W ++ K D P ++V
Sbjct: 113 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 224 NL-----VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ I L I +V ED GE+TC N +G SA L V
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 70 AVPHNKICDLGDTVRFQCSVTGQPAPWTSW----SKDGKPATPN----------ARVTIR 115
+P N +G V F C V P W K+G P+ A V
Sbjct: 115 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTT 174
Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
+KE + L I VT EDAG YT N+ G +A L ++
Sbjct: 175 DKE-IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR--VTIREKEDL 120
T +P F + + G T F+ ++G P P SW +DG+ + + V I +
Sbjct: 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
L I VT ++G Y++K N G +TA L + +A + P + L+++ G
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQGS 119
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
V + +V +P + ++R+ I+ D Q+ + +L L I YPED
Sbjct: 120 QVRLQVRVTGIP--TPVVKFYRDGAEIQSSLDF----QISQEGDLY--SLLIAEAYPEDS 171
Query: 241 GEFTCRVANELGEVVTSACLIVD 263
G ++ N +G ++A L+V
Sbjct: 172 GTYSVNATNSVGRATSTAELLVQ 194
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 45/196 (22%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P L+++ +G + TFE + P ++SWFR+ ++I + P VQ+ +
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFP--VPEVSWFRDGQVI--STSTLPGVQISFSDG 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD--------------------- 263
A+L IP V + G ++ + N G+ ++A L+V
Sbjct: 62 R--AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS 119
Query: 264 --------------VVK----GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
VVK G ++ S I G L I + +DSG Y V+ +
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179
Query: 306 NQHGSDSCYASVAVEG 321
N G + A + V+G
Sbjct: 180 NSVGRATSTAELLVQG 195
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 51/293 (17%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P F P + LG++ F+C VTG +W+KD + P + E+ L +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT-F 184
+VT DAG YT N G +A+L + +P P+ + LE R D T +
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------PRFIKKLEPSRIVKQDEHTRY 119
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
EC++ P + + W+++ I+ S + V+S +A L++ ++ ED G++T
Sbjct: 120 ECKIGGSP--EIKVLWYKDETEIQESSKFRMSF-VES-----VAVLEMYNLSVEDSGDYT 171
Query: 245 CRVANELGEVVTSACLI-------------VDVVKGKD---------------------- 269
C N G +S L V+ +KG D
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 231
Query: 270 -LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
L S + I++ + + I ++ D G+YQ SN GS +C S+ ++
Sbjct: 232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 33/86 (38%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
++ P F PH G V +C + G P SW KD + + I + L
Sbjct: 188 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 247
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGS 146
+ I V D G Y K N+ GS
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVGS 273
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 97/222 (43%), Gaps = 25/222 (11%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 15 APYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 62
Query: 109 NARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
R+ + + + I E V D G YT VEN YGS+ T L++++ RP +
Sbjct: 63 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRPIL 120
Query: 168 LNGL-ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRN--NRLIKLDSDMKPEVQVDSKE 223
GL N G V F C+V P+ I W ++ K D P ++V
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 224 NLVIAR---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ + L + +V D GE+ C+V+N +G+ SA L V
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 51/280 (18%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
LG++ F+C VTG +W+KD + P + E+ L + +VT DAG YT
Sbjct: 19 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 78
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT-FECQVQVVPPNDHD 197
N G +A+L + P P+ + LE R D T +EC++ P +
Sbjct: 79 YASNVAGKDSCSAQLGVQAP------PRFIKKLEPSRIVKQDEHTRYECKIGGSP--EIK 130
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
+ W+++ I+ S + V+S +A L++ ++ ED G++TC N G +S
Sbjct: 131 VLWYKDETEIQESSKFRMSF-VES-----VAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 258 ACLI-------------VDVVKGKD-----------------------LTSDGRLNIITV 281
L V+ +KG D L S + I++
Sbjct: 185 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE 244
Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
+ + I ++ D G+YQ SN GS +C S+ ++
Sbjct: 245 NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 62 LTSSPRFYA-VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
+ + PRF + ++I + R++C + G P W KD +++ + E +
Sbjct: 95 VQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 154
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
LE+ +++ED+G YT + N GS ++ L++ +P +P + L+ G
Sbjct: 155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK------GA 208
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
V EC++Q PP +SW ++ R +L S K ++ EN + + + I +V D
Sbjct: 209 DVHLECELQGTPP--FQVSWHKDKR--ELRSGKKYKIM---SENFLTS-IHILNVDSADI 260
Query: 241 GEFTCRVANELG 252
GE+ C+ +N++G
Sbjct: 261 GEYQCKASNDVG 272
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 33/86 (38%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
++ P F PH G V +C + G P SW KD + + I + L
Sbjct: 188 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 247
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGS 146
+ I V D G Y K N+ GS
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVGS 273
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTI 138
+TVRF+C G P P SW K+G+ R+ I+ + L + V D G YT
Sbjct: 30 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGL-ENLRCCDGDSVTFECQVQV-VPPNDH 196
VEN +GS+ T L++++ RP + GL N G V F C+V P+
Sbjct: 90 VVENKFGSIRQTYTLDVLERSP--HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH-- 145
Query: 197 DISWFRNNRL--IKLDSDMKPEVQV------DSKENLVIARLKIPHVYPEDEGEFTCRVA 248
I W ++ + K+ D P V V +S E V RL++ +V D GE+ CR
Sbjct: 146 -IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADV--RLRLANVSERDGGEYLCRAT 202
Query: 249 NELG 252
N +G
Sbjct: 203 NFIG 206
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 70 AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-----------DGKPATPNARVTIRE-- 116
+P N+ LG V F C V P W K DG P + I E
Sbjct: 119 GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESV 178
Query: 117 KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA 160
+ D+R L ++ V+ D G Y + N G E L + PRA
Sbjct: 179 EADVR-LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA 221
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
++V F C P ISW +N R + + + + +LV+ V P
Sbjct: 30 ANTVRFRCPAAGNP--TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMES-----VVPS 82
Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
D G +TC V N+ G + + L V
Sbjct: 83 DRGNYTCVVENKFGSIRQTYTLDV 106
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----L 123
F P N I G +C V+G P P +W + + +R K+ L
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRG------EEVIQLRSKKYSLLGGSNL 277
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
IS VT +D+G YT V ++ A+A L ++ P P LN NL + +
Sbjct: 278 LISNVTDDDSGTYTCVVTYKNENISASAELTVLVP------PWFLNHPSNLYAYESMDIE 331
Query: 184 FECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
FEC V P P ++W +N ++ + SD Q+ N L+I V DEG
Sbjct: 332 FECAVSGKPVPT---VNWMKNGDVV-IPSDY---FQIVGGSN-----LRILGVVKSDEGF 379
Query: 243 FTCRVANELGEVVTSACLIV 262
+ C NE G +SA LIV
Sbjct: 380 YQCVAENEAGNAQSSAQLIV 399
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 17/202 (8%)
Query: 67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK---DGKPATPNARVTIREKEDLRFL 123
RF + + +GDTV +C V G P P W K D P ++RV + L
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---L 179
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEAT-ARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
+IS + D+G+Y N + A + I+ + + L N+ +G
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
EC V PP +W R +I+L S + + NL+I+ +V +D G
Sbjct: 240 VLECCVSGYPP--PSFTWLRGEEVIQLRSK---KYSLLGGSNLLIS-----NVTDDDSGT 289
Query: 243 FTCRVANELGEVVTSACLIVDV 264
+TC V + + SA L V V
Sbjct: 290 YTCVVTYKNENISASAELTVLV 311
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P F P N + F+C+V+G+P P +W K+G P+ I +LR L +
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGV 372
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ D G Y EN G+ +++A+L + P
Sbjct: 373 VK---SDEGFYQCVAENEAGNAQSSAQLIVPKP 402
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 72 PHNKICDLGDTVRFQ------CSVTGQPAPWTSWSKDGKPATPNA-RVTIRE-KEDLRFL 123
PH K VR+Q C VTG P P W + GK + + I+E K L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
I+ VT +DA +Y ++ N GSV TA LE+ P A I PK L G+ + G+ V+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEVVS 123
Query: 184 FECQVQVVPPNDHDISWFRNNRLI 207
+ P D I+W + LI
Sbjct: 124 IKIPFSGKP--DPVITWQKGQDLI 145
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 266 KGKDLTSDGRLNIIT--VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+GK++ +DG I GG L I +T DD+ YQV +NQ GS S AS+ VE
Sbjct: 41 QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR---VTIREKEDLRFLEISEVTLEDAGLY 136
G+ V + +G+P P +W K N + R L F + V +DAG Y
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP--NGVERKDAGFY 176
Query: 137 TIKVENNYGSVEATARLEIMD 157
+ +N +G + T L++ D
Sbjct: 177 VVCAKNRFGIDQKTVELDVAD 197
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 72 PHNKICDLGDTVRFQ------CSVTGQPAPWTSWSKDGKPATPNA-RVTIRE-KEDLRFL 123
PH K VR+Q C VTG P P W + GK + + I+E K L
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
I+ VT +DA +Y ++ N GSV TA LE+ P A I PK L G+ + G+ V+
Sbjct: 63 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEVVS 121
Query: 184 FECQVQVVPPNDHDISWFRNNRLI 207
+ P D I+W + LI
Sbjct: 122 IKIPFSGKP--DPVITWQKGQDLI 143
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 266 KGKDLTSDGRLNIIT--VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+GK++ +DG I GG L I +T DD+ YQV +NQ GS S AS+ VE
Sbjct: 39 QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 95
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR---VTIREKEDLRFLEISEVTLEDAGLY 136
G+ V + +G+P P +W K N + R L F + V +DAG Y
Sbjct: 117 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP--NGVERKDAGFY 174
Query: 137 TIKVENNYGSVEATARLEIMD 157
+ +N +G + T L++ D
Sbjct: 175 VVCAKNRFGIDQKTVELDVAD 195
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
+ + P + V + D+G +R+ C+ G+P P W ++G+P RV + DLR
Sbjct: 290 VQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAG-DLR 348
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
F S+++LED+G+Y EN +G++ A+A L +
Sbjct: 349 F---SKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 80/215 (37%), Gaps = 30/215 (13%)
Query: 53 LNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGK--PATPN 109
LN A RL + P +G V +C G P P W K DG P
Sbjct: 194 LNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTT 253
Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN 169
A T L+I V+ ED G Y + EN+ G R+ + ++P+ L
Sbjct: 254 AEPT---------LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQ------AQPEWLK 298
Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR 229
+ + G ++ + C P + W RN L S + EV +L ++
Sbjct: 299 VISDTEADIGSNLRWGCAAAGKP--RPTVRWLRNGE--PLASQNRVEVLAG---DLRFSK 351
Query: 230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
L + ED G + C N+ G + SA L V
Sbjct: 352 LSL-----EDSGMYQCVAENKHGTIYASAELAVQA 381
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 40/128 (31%)
Query: 230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD-------------------------- 263
L+IP V EDEG + C N G +IV
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAA 317
Query: 264 ----------VVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
+ G+ L S R+ ++ L ++ +DSG YQ N+HG+
Sbjct: 318 AGKPRPTVRWLRNGEPLASQNRVEVLA----GDLRFSKLSLEDSGMYQCVAENKHGTIYA 373
Query: 314 YASVAVEG 321
A +AV+
Sbjct: 374 SAELAVQA 381
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 237 PEDEGEFTCRVANELGEVVTSACLIVD--VVKGKDLTSDGRLNIITVGGTSVLTIEDITG 294
P + F +G+ VT C V + K DG L+ L I ++
Sbjct: 206 PSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVSF 265
Query: 295 DDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
+D G Y+ N G D+ V+GR I+
Sbjct: 266 EDEGTYECEAENSKGRDT------VQGRIIV 290
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142
+F TG+P P W+KDGK T + + E + FLEI + D+GLYT V+N
Sbjct: 24 AKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN 83
Query: 143 NYGSVEATARLEI 155
+ GSV ++ +L I
Sbjct: 84 SAGSVSSSCKLTI 96
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 72 PHNKICDLGDTVRFQ------CSVTGQPAPWTSWSKDGKPATPNA-RVTIRE-KEDLRFL 123
PH K VR+Q C VTG P P W + GK + + I+E K L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
I+ VT +DA +Y ++ N GSV TA LE+ P A I PK L G+ + G+ V+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEVVS 123
Query: 184 FECQVQVVPPNDHDISWFRNNRLI 207
+ P D I+W + LI
Sbjct: 124 IKIPFSGKP--DPVITWQKGQDLI 145
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 266 KGKDLTSDGRLNIIT--VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+GK++ +DG I GG L I +T DD+ YQV +NQ GS S AS+ VE
Sbjct: 41 QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR---VTIREKEDLRFLEISEVTLEDAGLY 136
G+ V + +G+P P +W K N + R L F + V +DAG Y
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP--NGVERKDAGFY 176
Query: 137 TIKVENNYGSVEATARLEIMD----PRAI 161
+ +N +G + T L++ D PR +
Sbjct: 177 VVCAKNRFGIDQKTVELDVADVPDPPRGV 205
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFL 123
P+ A+P + D G + C+ TG+P P +WS G+ + R I +DL L
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 67
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
I +V +D GLYT+ + N +GS AT + I
Sbjct: 68 IIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 239 DEGEF---TCRVANELGEVVTSACLIVDVVKGKDLTSD--GRLNIITVGGTSVLTIEDIT 293
DEG+ C E VT +C G+ + S GR +I + L I D+
Sbjct: 20 DEGKVLTVACAFTGEPTPEVTWSC------GGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 73
Query: 294 GDDSGKYQVHVSNQHGSDSCYASVAV 319
D G Y + + N+ GSDS ++ +
Sbjct: 74 KQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFL 123
P+ A+P + D G + C+ TG+P P +WS G+ + R I +DL L
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
I +V +D GLYT+ + N +GS AT + I
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 239 DEGEF---TCRVANELGEVVTSACLIVDVVKGKDLTSD--GRLNIITVGGTSVLTIEDIT 293
DEG+ C E VT +C G+ + S GR +I + L I D+
Sbjct: 18 DEGKVLTVACAFTGEPTPEVTWSC------GGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 71
Query: 294 GDDSGKYQVHVSNQHGSDSCYASVAV 319
D G Y + + N+ GSDS ++ +
Sbjct: 72 KQDGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 77 CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
D+G +R+ C +G+P P W +DG+P R+ + E LRF S++ LED+G+Y
Sbjct: 306 ADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE-LRF---SKLVLEDSGMY 361
Query: 137 TIKVENNYGSVEATARLEIM 156
EN +G+V A+A L +
Sbjct: 362 QCVAENKHGTVYASAELTVQ 381
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 70/195 (35%), Gaps = 26/195 (13%)
Query: 71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVT 129
P + G V +C G P P W K DG T + L I V
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ-------TSKWLSSEPLLHIQNVD 265
Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
ED G Y + EN G R+ I ++P L+ + + G + + C
Sbjct: 266 FEDEGTYECEAENIKGRDTYQGRI------IIHAQPDWLDVITDTEADIGSDLRWSCVAS 319
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
P + W R+ + L S + EV S L ++L + ED G + C N
Sbjct: 320 GKP--RPAVRWLRDGQ--PLASQNRIEV---SGGELRFSKLVL-----EDSGMYQCVAEN 367
Query: 250 ELGEVVTSACLIVDV 264
+ G V SA L V
Sbjct: 368 KHGTVYASAELTVQA 382
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 13/193 (6%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED--LR 121
S P F VP ++ G F C TG+P P +W K GK + + R + E +D
Sbjct: 6 SKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDDGAGS 64
Query: 122 FLEISEVTLE-DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD-G 179
L I + ++ D +Y N+ G + +A+L +++ + S ++ L+ + G
Sbjct: 65 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKG 124
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
+ T C P D +ISWF++ + +D P + L L+I D
Sbjct: 125 RTATMLCAAGGNP--DPEISWFKD--FLPVD----PAASNGRIKQLRSGALQIESSEESD 176
Query: 240 EGEFTCRVANELG 252
+G++ C N G
Sbjct: 177 QGKYECVATNSAG 189
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
S+P + E+ G +F CQ P I+W + + K+ S ++ D
Sbjct: 6 SKPVFVKVPEDQTGLSGGVASFVCQATGEP--KPRITWMKKGK--KVSSQRFEVIEFDDG 61
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
V+ R++ P DE + C N LGE+ TSA L V
Sbjct: 62 AGSVL-RIQ-PLRVQRDEAIYECTATNSLGEINTSAKLSV 99
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 22/194 (11%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P + D G F C TG P SW KDGK I E + L I V E
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRIESVKKE 399
Query: 132 DAGLYTIKVENNYGSVEATARLEI---MDPRAIISRPKVLNGLENLRCCDGDSVTFECQV 188
D G+Y V N+ S EA+A L++ DP P + + G SV +C
Sbjct: 400 DKGMYQCFVRNDRESAEASAELKLGGRFDP------PVIRQAFQEETMEPGPSVFLKCVA 453
Query: 189 QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
P +ISW + + I ++D Q + V++ L I V+ D G + C
Sbjct: 454 GGNP--TPEISWELDGKKIA-NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Query: 249 NELGEVVTSACLIV 262
+++G SA L V
Sbjct: 511 SKVGVAEHSAKLNV 524
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 103/275 (37%), Gaps = 62/275 (22%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE-----KEDLRFLEISEVTLEDAG 134
G +V +C G P P SW DGK N R + + + + +L I+ V D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 135 LYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN 194
LY ++ G E +A+L + I +E G+++ C V P +
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNVYGLPYI-------RQMEKKAIVAGETLIVTCPVAGYPID 556
Query: 195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE---- 250
I W R+NR + ++ K V L+I ++ D+ +TC N+
Sbjct: 557 S--IVWERDNRALPINRKQK----VFPNGTLIIENVE----RNSDQATYTCVAKNQEGYS 606
Query: 251 --------------------------LGEVVTSACLIV--DVVKGKDLTSDGR-----LN 277
+G+ +T C + D+ D T DG+ L
Sbjct: 607 ARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLG 666
Query: 278 IIT--VGG-TSVLTIEDITGDDSGKYQVHVSNQHG 309
I T VG SVLTIE + +G + H N G
Sbjct: 667 ITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 77/219 (35%), Gaps = 40/219 (18%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLG----------DTVRFQCSVTGQPAPWTSWSKDGK 104
SA + R + + P AVP K+ L T+ C G P P W K +
Sbjct: 230 SATKGRLVITEPISSAVP--KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIE 287
Query: 105 PATPNARVTI--REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAII 162
T V + R K+ L I + +ED+G Y V N+ G L + P +
Sbjct: 288 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 347
Query: 163 SRPKVLNGLENLRCCD-GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
P + D G F CQ P +SW ++ + I +
Sbjct: 348 IDPPT-------QTVDFGRPAVFTCQYTGNPIK--TVSWMKDGKAIGHSESV-------- 390
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL 260
L+I V ED+G + C V N+ SA L
Sbjct: 391 --------LRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 19/190 (10%)
Query: 77 CDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTI-REKEDLRFLEISEVTLEDAG 134
+G + CSV G P W+ DG+ + + +T R L I V AG
Sbjct: 631 AQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAG 690
Query: 135 LYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN 194
+T N G + T L + P I P + G EC+ P
Sbjct: 691 NFTCHARNLAGHQQFTTPLNVYVPPRWILEPT------DKAFAQGSDAKVECKADGFP-- 742
Query: 195 DHDISWFRNNRLIKLDSDMKPEVQ-VDSKENLVI--ARLKIPHVYPEDEGEFTCRVANEL 251
++W K D E + + +N+ + L + ++ +EG + C N +
Sbjct: 743 KPQVTW------KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGI 796
Query: 252 GEVVTSACLI 261
G +++ +I
Sbjct: 797 GSGLSAVIMI 806
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF--- 122
PR+ P +K G + +C G P P +W K TP +++ +++R
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKK-AVGDTPGEYKDLKKSDNIRVEEG 773
Query: 123 -LEISEVTLEDAGLYTIKVENNYGS 146
L + + + G Y + N GS
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGS 798
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 27/157 (17%)
Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251
P + + FR + I+ + K V ++ + V L I ED G++ C V N +
Sbjct: 271 PAQGYPVPVFRWYKFIE-GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 329
Query: 252 G-EVVTSACLIVDVVKGK-----DLTSDGRLNIITVGGT--------------------S 285
G E V + + + K GR + T T S
Sbjct: 330 GGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES 389
Query: 286 VLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
VL IE + +D G YQ V N S A + + GR
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR 426
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 25/193 (12%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTL 130
P + G TV+ +C G P P W + DGKP AR R K + LEI
Sbjct: 211 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR---RHKSN-GILEIPNFQQ 266
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
EDAG Y EN+ G A +L ++P + + ++ +SV +EC+
Sbjct: 267 EDAGSYECVAENSRGKNVAKGQL------TFYAQPNWVQIINDIHVAMEESVFWECKANG 320
Query: 191 VPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
P + W +N + L+ D +Q++ L I V D G + C N
Sbjct: 321 RPKPTY--RWLKNGDPLLTRD-----RIQIEQ------GTLNITIVNLSDAGMYQCVAEN 367
Query: 250 ELGEVVTSACLIV 262
+ G + +SA L V
Sbjct: 368 KHGVIFSSAELSV 380
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 68 FYAVPH-----NKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
FYA P+ N I + ++V ++C G+P P W K+G P R+ I +
Sbjct: 291 FYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT--- 347
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
L I+ V L DAG+Y EN +G + ++A L ++
Sbjct: 348 -LNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 381
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 25/193 (12%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTL 130
P + G TV+ +C G P P W + DGKP AR R K + LEI
Sbjct: 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR---RHKSN-GILEIPNFQQ 267
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
EDAG Y EN+ G A +L ++P + + ++ +SV +EC+
Sbjct: 268 EDAGSYECVAENSRGKNVAKGQL------TFYAQPNWVQIINDIHVAMEESVFWECKANG 321
Query: 191 VPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
P + W +N + L+ D +Q++ L I V D G + C N
Sbjct: 322 RPKPTY--RWLKNGDPLLTRD-----RIQIEQ------GTLNITIVNLSDAGMYQCVAEN 368
Query: 250 ELGEVVTSACLIV 262
+ G + +SA L V
Sbjct: 369 KHGVIFSSAELSV 381
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 68 FYAVPH-----NKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
FYA P+ N I + ++V ++C G+P P W K+G P R+ I +
Sbjct: 292 FYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT--- 348
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
L I+ V L DAG+Y EN +G + ++A L ++
Sbjct: 349 -LNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-----L 120
PRF P ++ G F C TG P P W+K GK + N R + E +D L
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSVL 65
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD----PRAI--ISRPKVLNGLENL 174
R + T D +Y NN G + + RL ++ PR I L +E
Sbjct: 66 RIQPLR--TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
R + T C P D +I+WF++ + ++ Q+ S+ I L+I
Sbjct: 124 R-----TATMLCAASGNP--DPEITWFKDFLPVDTSNNNGRIKQLRSES---IGALQIEQ 173
Query: 235 VYPEDEGEFTCRVANELG 252
D+G++ C N G
Sbjct: 174 SEESDQGKYECVATNSAG 191
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED--LR 121
S P F VP ++ G F C TG+P P +W K GK + + R + E +D
Sbjct: 5 SKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDDGAGS 63
Query: 122 FLEISEVTLE-DAGLYTIKVENNYGSVEATARLEIMDPRAI-ISRPKVLNGLENLRCCDG 179
L I + ++ D +Y N+ G + +A+L +++ + P + G +
Sbjct: 64 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKA 123
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
+ T C P D +ISWF++ + +D P + L L+I D
Sbjct: 124 RTATMLCAAGGNP--DPEISWFKD--FLPVD----PATSNGRIKQLRSGALQIESSEESD 175
Query: 240 EGEFTCRVANELG 252
+G++ C N G
Sbjct: 176 QGKYECVATNSAG 188
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
S+P + E+ G +F CQ P I+W + + K+ S ++ D
Sbjct: 5 SKPVFIKVPEDQTGLSGGVASFVCQATGEP--KPRITWMKKGK--KVSSQRFEVIEFDDG 60
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
V+ R++ P DE + C N LGE+ TSA L V
Sbjct: 61 AGSVL-RIQ-PLRVQRDEAIYECTATNSLGEINTSAKLSV 98
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFL 123
P F P + G R C V+G P P SW DGKP P++ ++ +RE + L
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN-GVHSL 68
Query: 124 EISEVTLEDAGLYTIKVENNYG 145
I VT DAG+YT N G
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAG 90
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
RP L +L +G +C+V +P D+SW + + ++ DS K V+ +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLP--TPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+L+I V D G +TC N G+ S L+V
Sbjct: 67 SLIIEP-----VTSRDAGIYTCIATNRAGQNSFSLELVV 100
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
S R P + G++ RF C G+P P +W + G+ + +AR + + E
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
IS V D G Y++ VEN+ G EA L I
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITG 294
VY + F+C E VT + KG+ L++ R + T S I +
Sbjct: 20 VYEGESARFSCDTDGEPVPTVTW------LRKGQVLSTSARHQVTTTKYKSTFEISSVQA 73
Query: 295 DDSGKYQVHVSNQHGSDSCYASVAVE 320
D G Y V V N G ++ ++
Sbjct: 74 SDEGNYSVVVENSEGKQEAEFTLTIQ 99
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
+ T + R P + G++ RF C G+P P +W + G+ + +AR + +
Sbjct: 10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
EIS V D G Y++ VEN+ G EA L I
Sbjct: 70 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 213 MKPEVQVDSKENLVIARLKIPH---VYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
M SK L L P VY + F+C E VT + KG+
Sbjct: 1 MHHHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTW------LRKGQV 54
Query: 270 LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
L++ R + T S I + D G Y V V N G ++ ++
Sbjct: 55 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 16/162 (9%)
Query: 109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR--PK 166
NA + D+ +E+ +L+D G Y ++ + R ++ ++ R P
Sbjct: 613 NATMFSNSTNDILIMELKNASLQDQGDYVCLAQDR----KTKKRHCVVRQLTVLERVAPT 668
Query: 167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
+ LEN G+S+ C PP I WF++N + DS + V D NL
Sbjct: 669 ITGNLENQTTSIGESIEVSCTASGNPP--PQIMWFKDNETLVEDSGI---VLKDGNRNLT 723
Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
I R++ EDEG +TC+ + LG A I++ + K
Sbjct: 724 IRRVR-----KEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
+G+ VR G P P W K+G P N TI+ L +E+SE D G YT+
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNH--TIKAGHVLTIMEVSE---RDTGNYTV 398
Query: 139 KVENNYGSVEATARLEI---MDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPND 195
+ N + + + + + P+ I +++ +++ + G + T C V +PP
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQ--IGEKSLISPVDSYQY--GTTQTLTCTVYAIPP-P 453
Query: 196 HDISWF 201
H I W+
Sbjct: 454 HHIHWY 459
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDA 133
N+ +G+++ C+ +G P P W KD + ++ + +++ R L I V ED
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDE 732
Query: 134 GLYTIKVENNYGSVEATARLEI 155
GLYT + + G + A I
Sbjct: 733 GLYTCQACSVLGCAKVEAFFII 754
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 81 DTVRFQCSVTGQPAPWTSWSKDG-KPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
+ F C+V P P SW+++ + R +IRE L L I V D G+Y
Sbjct: 23 EVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL--LTILSVEDSDDGIYCCT 80
Query: 140 VENNYG-SVEATARLEI-MDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
N G +VE+ L++ M P+ I+RP + N++ +G C P
Sbjct: 81 ANNGVGGAVESCGALQVKMKPK--ITRPPI-----NVKIIEGLKAVLPCTTMGNP--KPS 131
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252
+SW IK DS ++ ++ E+ L+I +V ED G++ C N LG
Sbjct: 132 VSW------IKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLG 177
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P+ P N G C+ G P P SW K N+R+ + E LR I
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLR---I 157
Query: 126 SEVTLEDAGLYTIKVENNYGS 146
V EDAG Y +N+ G+
Sbjct: 158 HNVQKEDAGQYRCVAKNSLGT 178
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL-RFLE 124
PRF P ++I G F C TG P P +W+K GK TI E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GDSV 182
I + T D +Y +N+ G + A+L ++ + S ++ L+ + +
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
T C P D +I+WF++ + +D P + L L+I D+G+
Sbjct: 127 TMLCAASGNP--DPEITWFKD--FLPVD----PSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 243 FTCRVANELG 252
+ C N G
Sbjct: 179 YECVATNSAG 188
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 51 YSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA 110
YS + + R +PRF +P + G V C G P P+ W + + TP
Sbjct: 191 YSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED 250
Query: 111 RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+ + LE+++V +D+ YT ++ G +EA A++ +
Sbjct: 251 DMPVGRN----VLELTDV--KDSANYTCVAMSSLGVIEAVAQITV 289
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 157 DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
+P I PK G+ G +F CQ P ++W N + K++S
Sbjct: 5 EPPRFIKEPKDQIGV------SGGVASFVCQATGDP--KPRVTW--NKKGKKVNSQRFET 54
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
++ D V+ R++ P P DE + C N +GE+ A L V
Sbjct: 55 IEFDESAGAVL-RIQ-PLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTI-REKEDLRFLEISEVTL 130
H KI + G V F C V G P P W KDGK +P + TI R+ + L + TL
Sbjct: 17 HYKIFE-GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 75
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
+D G YTI N G + T RL + +A+ S P
Sbjct: 76 DDDGNYTIMAANPQGRISCTGRLMV---QAVNSGP 107
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL-RFLE 124
PRF P ++I G F C TG P P +W+K GK TI E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GDSV 182
I + T D +Y +N+ G + A+L ++ + S ++ L+ + +
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
T C P D +I+WF++ + +D P + L L+I D+G+
Sbjct: 127 TMLCAASGNP--DPEITWFKD--FLPVD----PSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 243 FTCRVANELG 252
+ C N G
Sbjct: 179 YECVATNSAG 188
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 157 DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
+P I PK G+ G +F CQ P ++W N + K++S
Sbjct: 5 EPPRFIKEPKDQIGV------SGGVASFVCQATGDP--KPRVTW--NKKGKKVNSQRFET 54
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
++ D V+ R++ P P DE + C N +GE+ A L V
Sbjct: 55 IEFDESAGAVL-RIQ-PLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 14/181 (7%)
Query: 74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDA 133
N + G+ + F C +G P P SW ++GK N + ++ L + + D
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDG 70
Query: 134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP- 192
G Y + N G E A L++ II L+N + VT C + P
Sbjct: 71 GPYVCRATNKAGEDEKQAFLQVFVQPHIIQ-------LKNETTYENGQVTLVCDAEGEPI 123
Query: 193 PNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251
P +I+W R + + D + +++ K + L I V D G + C A+ +
Sbjct: 124 P---EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 252 G 252
G
Sbjct: 181 G 181
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 26/152 (17%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G+ +TF C+ P + ISWFRN +LI+ + E + N L + ++
Sbjct: 19 GEEMTFSCRASGSP--EPAISWFRNGKLIEEN-----EKYILKGSN---TELTVRNIINS 68
Query: 239 DEGEFTCRVANELGEVVTSACLIV----DVVKGKDLTSDGRLNIITVGGTSVLTIEDIT- 293
D G + CR N+ GE A L V +++ K+ T+ + V I +IT
Sbjct: 69 DGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITW 128
Query: 294 -----------GDDSGKYQVHVSNQHGSDSCY 314
GD S ++ V QHGS S +
Sbjct: 129 KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 160
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL-RFLE 124
PRF P ++I G F C TG P P +W+K GK TI E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GDSV 182
I + T D +Y +N+ G + A+L ++ + S ++ L+ + +
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
T C P D +I+WF++ + +D P + L L+I D+G+
Sbjct: 127 TMLCAASGNP--DPEITWFKD--FLPVD----PSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 243 FTCRVANELG 252
+ C N G
Sbjct: 179 YECVATNSAG 188
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 157 DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
+P I PK G+ G +F CQ P ++W N + K++S
Sbjct: 5 EPPRFIKEPKDQIGV------SGGVASFVCQATGDP--KPRVTW--NKKGKKVNSQRFET 54
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
++ D V+ R++ P P DE + C N +GE+ A L V
Sbjct: 55 IEFDESAGAVL-RIQ-PLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 50 PYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 5 PYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 52
Query: 110 ARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIM 156
R+ + + + I E V D G YT VEN YGS+ T L+++
Sbjct: 53 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 21/211 (9%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----RVTIREKED 119
SPR P + + + C V G+P P W KDG+P + N RV ++
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 120 LRFLEISEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
+ + +D G Y +N G +V A L+I + R ++ R
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA-----VLRDDFRVEPKDTRVAK 122
Query: 179 GDSVTFECQVQVVPPN---DHDISWFRNNRLIKLDSDMKPEVQVDSKENLV-IARLKIPH 234
G++ EC PP + + W ++ + LD S+ +V L I +
Sbjct: 123 GETALLECG----PPKGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISN 176
Query: 235 VYPEDEGEFTCRVANELGEVVTS-ACLIVDV 264
V P DEG + C N +G +S A LIV V
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 21/211 (9%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----RVTIREKED 119
SPR P + + + C V G+P P W KDG+P + N RV ++
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 120 LRFLEISEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
+ + +D G Y +N G +V A L+I + R ++ R
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA-----VLRDDFRVEPKDTRVAK 122
Query: 179 GDSVTFECQVQVVPPN---DHDISWFRNNRLIKLDSDMKPEVQVDSKENLV-IARLKIPH 234
G++ EC PP + + W ++ + LD S+ +V L I +
Sbjct: 123 GETALLECG----PPKGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISN 176
Query: 235 VYPEDEGEFTCRVANELGEVVTS-ACLIVDV 264
V P DEG + C N +G +S A LIV V
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTI-REKEDLRFLEISEVTL 130
H KI + G V F C V G P P W KDGK +P + TI R+ + L + TL
Sbjct: 16 HYKIFE-GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 74
Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
+D G YTI N G V T RL +
Sbjct: 75 DDDGNYTIMAANPQGRVSCTGRLMV 99
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 50 PYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 9 PYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 56
Query: 110 ARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIM 156
R+ + + + I E V D G YT VEN YGS+ T L+++
Sbjct: 57 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 104
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 50 PYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
PY N+ +RL +AVP +TV+F+C G P P W K+GK
Sbjct: 10 PYWTNTEKMEKRL------HAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 57
Query: 110 ARVTIREKEDLRFLEISE-VTLEDAGLYTIKVENNYGSVEATARLEIM 156
R+ + + + I E V D G YT VEN YGS+ T L+++
Sbjct: 58 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 105
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 51 YSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA 110
YS+ A R + PRF P+ G + F C V P +W KD + +
Sbjct: 363 YSIRDAFWDRS-EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV 421
Query: 111 RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+ R + L I+ V +D G YT++ +N+YG+ E L +
Sbjct: 422 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
++P+ + +G S F C+V P ++W +++R ++K V+ +
Sbjct: 375 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDR------ELKQSVKYMKR 426
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELG 252
N L I V +D+GE+T R N G
Sbjct: 427 YNGNDYGLTINRVKGDDKGEYTVRAKNSYG 456
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 243 FTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQV 302
F CRV + +S ++ ++L + G LTI + GDD G+Y V
Sbjct: 396 FYCRV------IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTV 449
Query: 303 HVSNQHGS 310
N +G+
Sbjct: 450 RAKNSYGT 457
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 51 YSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA 110
YS+ A R + PRF P+ G + F C V P +W KD + +
Sbjct: 469 YSIRDAFWDRS-EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV 527
Query: 111 RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+ R + L I+ V +D G YT++ +N+YG+ E L +
Sbjct: 528 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
++P+ + +G S F C+V P ++W +++R ++K V+ +
Sbjct: 481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDR------ELKQSVKYMKR 532
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELG 252
N L I V +D+GE+T R N G
Sbjct: 533 YNGNDYGLTINRVKGDDKGEYTVRAKNSYG 562
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 243 FTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQV 302
F CRV + +S ++ ++L + G LTI + GDD G+Y V
Sbjct: 502 FYCRV------IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTV 555
Query: 303 HVSNQHGS 310
N +G+
Sbjct: 556 RAKNSYGT 563
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLEISEVTLEDAGLYTI 138
G V V G+P P SW ++ +P P+ R E E L L I DAG YT
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTC 79
Query: 139 KVENNYGSVEATARLEI 155
K N YG+ + ARLE+
Sbjct: 80 KAVNEYGARQCEARLEV 96
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 33/195 (16%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL-------ED 132
G+ C V+ PAP SW + T TI D RF ++ L D
Sbjct: 17 GEDAEVVCRVSSSPAPAVSWLYHNEEVT-----TI---SDNRFAMLANNNLQILNINKSD 68
Query: 133 AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLE---NLRCCDGDSVTFECQVQ 189
G+Y + G VEA ++ D I++ P ++ + N G+ +TF C+
Sbjct: 69 EGIYRCE-----GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
P + ISWFRN +LI+ + E + N L + ++ D G + CR N
Sbjct: 124 GSP--EPAISWFRNGKLIEEN-----EKYILKGSN---TELTVRNIINSDGGPYVCRATN 173
Query: 250 ELGEVVTSACLIVDV 264
+ GE A L V V
Sbjct: 174 KAGEDEKQAFLQVFV 188
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLED 132
N + G+ + F C +G P P SW ++GK N + ++ L + + D
Sbjct: 106 FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSD 163
Query: 133 AGLYTIKVENNYGSVEATARLEIM 156
G Y + N G E A L++
Sbjct: 164 GGPYVCRATNKAGEDEKQAFLQVF 187
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 23/198 (11%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
S P F P ++I G F C TG P P +W+K GK +V + E + F
Sbjct: 5 SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGK------KVNSQRFETIEFD 58
Query: 124 EISEVTL--------EDAGLYTIKVENNYGSVEATARLEIM-DPRAIISRPKVLNGLENL 174
E + L D +Y +N +G V A+L ++ + + P + G +
Sbjct: 59 ESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK 118
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
+ T C P D +I+WF++ + +D P + L L+I
Sbjct: 119 VVERTRTATMLCAASGNP--DPEITWFKD--FLPVD----PSTSNGRIKQLRSGGLQIES 170
Query: 235 VYPEDEGEFTCRVANELG 252
D+G++ C +N G
Sbjct: 171 SEETDQGKYECVASNSAG 188
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P + D G F C TG P SW KDGK I E + L I V E
Sbjct: 314 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRIESVKKE 363
Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
D G+Y V N+ S EA+A L++
Sbjct: 364 DKGMYQCFVRNDRESAEASAELKL 387
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 74/210 (35%), Gaps = 36/210 (17%)
Query: 54 NSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT 113
+SA RT L P V H T+ C G PAP W K + T V
Sbjct: 209 SSAPRTPALVQKPLELMVAH--------TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVV 260
Query: 114 I--REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL 171
+ R K+ L I + +ED+G Y V N+ G L + P + P
Sbjct: 261 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT---- 316
Query: 172 ENLRCCD-GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
+ D G F CQ P +SW ++ + I + L
Sbjct: 317 ---QTVDFGRPAVFTCQYTGNPIK--TVSWMKDGKAIGHSESV----------------L 355
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACL 260
+I V ED+G + C V N+ SA L
Sbjct: 356 RIESVKKEDKGMYQCFVRNDRESAEASAEL 385
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P + D G F C TG P SW KDGK I E + L I V E
Sbjct: 320 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRIESVKKE 369
Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
D G+Y V N+ S EA+A L++
Sbjct: 370 DKGMYQCFVRNDRESAEASAELKL 393
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 74/210 (35%), Gaps = 36/210 (17%)
Query: 54 NSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT 113
+SA RT L P V H T+ C G PAP W K + T V
Sbjct: 215 SSAPRTPALVQKPLELMVAH--------TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVV 266
Query: 114 I--REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL 171
+ R K+ L I + +ED+G Y V N+ G L + P + P
Sbjct: 267 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT---- 322
Query: 172 ENLRCCD-GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
+ D G F CQ P +SW ++ + I + L
Sbjct: 323 ---QTVDFGRPAVFTCQYTGNPIK--TVSWMKDGKAIGHSESV----------------L 361
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACL 260
+I V ED+G + C V N+ SA L
Sbjct: 362 RIESVKKEDKGMYQCFVRNDRESAEASAEL 391
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P + D G F C TG P SW KDGK I E + L I V E
Sbjct: 317 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRIESVKKE 366
Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
D G+Y V N+ S EA+A L++
Sbjct: 367 DKGMYQCFVRNDRESAEASAELKL 390
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 63/186 (33%), Gaps = 28/186 (15%)
Query: 78 DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI--REKEDLRFLEISEVTLEDAGL 135
+L + C P P W K + T V + R K+ L I + +ED+G
Sbjct: 228 ELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGK 287
Query: 136 YTIKVENNYGSVEATARLEIMDP-RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN 194
Y V N+ G L + P A I P G F CQ P
Sbjct: 288 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF-------GRPAVFTCQYTGNPIK 340
Query: 195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254
+SW ++ + I + L+I V ED+G + C V N+
Sbjct: 341 --TVSWMKDGKAIGHSESV----------------LRIESVKKEDKGMYQCFVRNDRESA 382
Query: 255 VTSACL 260
SA L
Sbjct: 383 EASAEL 388
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 71/198 (35%), Gaps = 37/198 (18%)
Query: 151 ARLEIMDPRAIISRPKVLNGLENLRCCD---GDSVTFECQVQVVPPNDHDISWFRNNRLI 207
RL I +P + RPKV N + + D S + C Q P FR + I
Sbjct: 201 GRLVITEPVGSV-RPKV-NPQDKHQFIDVELASSYSLLCMAQSYPTPS-----FRWYKFI 253
Query: 208 KLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG-EVVTSACLIVDVVK 266
+ + K V ++ + V L I ED G++ C V N +G E V + + +
Sbjct: 254 E-GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLS 312
Query: 267 GK-----DLTSDGRLNIITVGGT--------------------SVLTIEDITGDDSGKYQ 301
K GR + T T SVL IE + +D G YQ
Sbjct: 313 AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQ 372
Query: 302 VHVSNQHGSDSCYASVAV 319
V N S A + +
Sbjct: 373 CFVRNDRESAEASAELKL 390
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 18/193 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-PNARVTIREKE-DLRFL 123
P P N+ +G F C+ G P P W K+GK + +R T+ E+ + L
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 124 EISEVTL-EDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GD 180
I V D Y EN G +V A A L I + + V+ R + G
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 181 SVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
+V C+ P PN I W +N + + + + +L L+I + ED
Sbjct: 127 TVLMTCKAIGNPTPN---IYWIKNQTKVDMS---------NPRYSLKDGFLQIENSREED 174
Query: 240 EGEFTCRVANELG 252
+G++ C N +G
Sbjct: 175 QGKYECVAENSMG 187
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG-KPATPNARVTIREKEDLRFLEISEVTL 130
P ++ ++G TV C G P P W K+ K N R ++++ FL+I
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG----FLQIENSRE 172
Query: 131 EDAGLYTIKVENNYGSVEATA 151
ED G Y EN+ G+ + A
Sbjct: 173 EDQGKYECVAENSMGTEHSKA 193
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA-TPNARVTIREKEDLRFLE 124
PRF VP N D G R V+G PAP SW +G+ + + I ++ L L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
V DAG Y +N G T +L+++
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P+ + EN+ +G + +V +P D +SW+ N R ++ D K V +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPD--VSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L+ ++ D G + C N GE + L V
Sbjct: 64 LIFEVVR-----ASDAGAYACVAKNRAGEATFTVQLDV 96
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 18/193 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-PNARVTIREKE-DLRFL 123
P P N+ +G F C+ G P P W K+GK + +R T+ E+ + L
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 124 EISEVTL-EDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD-GD 180
I V D Y EN G +V A A L I + + V+ R + G
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 128
Query: 181 SVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
+V C+ P PN I W +N + + + + +L L+I + ED
Sbjct: 129 TVLMTCKAIGNPTPN---IYWIKNQTKVDMS---------NPRYSLKDGFLQIENSREED 176
Query: 240 EGEFTCRVANELG 252
+G++ C N +G
Sbjct: 177 QGKYECVAENSMG 189
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG-KPATPNARVTIREKEDLRFLEISEVTL 130
P ++ ++G TV C G P P W K+ K N R ++++ FL+I
Sbjct: 119 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG----FLQIENSRE 174
Query: 131 EDAGLYTIKVENNYGSVEATA 151
ED G Y EN+ G+ + A
Sbjct: 175 EDQGKYECVAENSMGTEHSKA 195
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
+P + ++ +G + F+C+V+ P D ++ WF+++ +K ++ D +
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYP--DPEVMWFKDDNPVKESRHF--QIDYDEEG 96
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
N L I V +D+ ++TC+ N LGE +A L+V+ +
Sbjct: 97 N---CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYTI 138
G RF C V G P P W KD P + I E+ L ISEV +D YT
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 139 KVENNYGSVEATARL 153
K N+ G TA L
Sbjct: 116 KAVNSLGEATCTAEL 130
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
G LTI ++ GDD KY N G +C A + VE
Sbjct: 96 GNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYTI 138
G RF C V G P P W KD P + I E+ L ISEV +D YT
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 139 KVENNYGSVEATARL 153
K N+ G TA L
Sbjct: 116 KAVNSLGEATCTAEL 130
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
+P + ++ +G + F+C+V+ P D ++ WF+++ +K ++ D +
Sbjct: 41 KPYFTKTILDMDVVEGSAARFDCKVEGYP--DPEVMWFKDDNPVKESRHF--QIDYDEEG 96
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
N L I V +D+ ++TC+ N LGE +A L+V+ +
Sbjct: 97 N---CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
G LTI ++ GDD KY N G +C A + VE
Sbjct: 96 GNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 70/199 (35%), Gaps = 29/199 (14%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-----PNARVTIREKEDL 120
PR P + I G+ C G+P P W K G+ P + + L
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 121 RFLEI--SEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCC 177
FL I + D G+Y N G +V A LE+ I R ++
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA-----ILRDDFRQNPSDVMVA 124
Query: 178 DGDSVTFECQVQVVPPNDHD---ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
G+ ECQ PP H ISW + D P D + + +L I +
Sbjct: 125 VGEPAVMECQ----PPRGHPEPTISWKK---------DGSPLDDKDERITIRGGKLMITY 171
Query: 235 VYPEDEGEFTCRVANELGE 253
D G++ C N +GE
Sbjct: 172 TRKSDAGKYVCVGTNMVGE 190
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 3/131 (2%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD-MKPEVQVDSKE 223
P+++ +L G+ T C+ + P I W++ ++ D D + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRP--TPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGG 283
+L R+ DEG + C N LGE V+ + + D + ++ VG
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGE 127
Query: 284 TSVLTIEDITG 294
+V+ + G
Sbjct: 128 PAVMECQPPRG 138
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 123 LEISEVTLEDAGLYTIKV-ENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
L +T++D G+YT+ + + NY +AT R + P +++P + + N + DS
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP---VTQPFL--QVTNTTVKELDS 127
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
VT C + N I W N++ ++L M S+ N + L+I + ED G
Sbjct: 128 VTLTCLSNDIGAN---IQWLFNSQSLQLTERMTL-----SQNNSI---LRIDPIKREDAG 176
Query: 242 EFTCRVAN 249
E+ C ++N
Sbjct: 177 EYQCEISN 184
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRF- 122
+P F P +K GD+V+ +C ++ P P W ++ + N R+++ + R
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
L I +V +DAG YT+ N G RL++
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P + ++ + +GDSV ECQ+ +PP + W RNN +++ ++D Q +N
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPP--PKLFWKRNNEMVQFNTDRISLYQ----DN 69
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
L I V +D G +T NE G VT+ +DV
Sbjct: 70 TGRVTLLIKDVNKKDAGWYTVSAVNEAG--VTTCNTRLDV 107
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 123 LEISEVTLEDAGLYTIKV-ENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
L +T++D G+YT+ + + NY +AT R + P +++P + + N + DS
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP---VTQPFL--QVTNTTVKELDS 127
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
VT C + N I W N++ ++L M S+ N + L+I + ED G
Sbjct: 128 VTLTCLSNDIGAN---IQWLFNSQSLQLTERMTL-----SQNNSI---LRIDPIKREDAG 176
Query: 242 EFTCRVAN 249
E+ C ++N
Sbjct: 177 EYQCEISN 184
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P + LEN G+S+ C PP I WF++N + DS + V D N
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPP--PQIMWFKDNETLVEDSGI---VLKDGNRN 65
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
L I R++ EDEG +TC+ + LG A I++ + K
Sbjct: 66 LTIRRVR-----KEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
+P N+ +G+++ C+ +G P P W KD + ++ + + K+ R L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLT 67
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATA 151
I V ED GLYT + + G + A
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVEA 94
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 23/187 (12%)
Query: 71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFLEISEV 128
V + + GD C P + ++ K+GK P R+T + + L
Sbjct: 218 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 277
Query: 129 TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCC-DGDSVTFECQ 187
ED G+YT +V+N G + + L++ ++S PK E + G VT C+
Sbjct: 278 LPEDEGVYTCEVDNGVGKPQKHS-LKL----TVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332
Query: 188 VQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
V +P PN + W N + + + + + L I V D+G + CR
Sbjct: 333 VTGLPAPN---VVWSHNAKPLS-----------GGRATVTDSGLVIKGVKNGDKGYYGCR 378
Query: 247 VANELGE 253
NE G+
Sbjct: 379 ATNEHGD 385
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 105/307 (34%), Gaps = 69/307 (22%)
Query: 56 AIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNA---- 110
+ R L +SP A H K G + C + P P +W K A PNA
Sbjct: 94 SFRKTYLIASP---AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD 150
Query: 111 ---RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-----VEATARLEIMDPRAII 162
R+T +L F +++ + D Y +N VE + D
Sbjct: 151 FDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK 210
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP---PNDHDISWFRNNRLIKLDSDMKPEVQV 219
P +++ GD C P PN +F+N + D + PE ++
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPN-----YFKNGK----DVNGNPEDRI 261
Query: 220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGE--------VVTSAC-------LIVDV 264
RL PEDEG +TC V N +G+ V SA ++ V
Sbjct: 262 TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVV 321
Query: 265 VKGKDLT----------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQV 302
+G+D+T S GR + G L I+ + D G Y
Sbjct: 322 KQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG----LVIKGVKNGDKGYYGC 377
Query: 303 HVSNQHG 309
+N+HG
Sbjct: 378 RATNEHG 384
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 107/294 (36%), Gaps = 77/294 (26%)
Query: 80 GDTVRFQCSVT-GQPAPWTSW-SKDGKPATPNARVTIREKEDLRFLEIS----------- 126
G + QC+ G P+P W S +P T + RV+ DL F +
Sbjct: 131 GAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCN 190
Query: 127 -----EVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
T++ +T+KV G E T M P+ S VL G++ L
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVAERTP--SFMYPQGTASSQMVLRGMDLL------- 241
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
EC VP DI+W++ + D EN A L+I +V ED G
Sbjct: 242 --LECIASGVP--TPDIAWYKKGGDLPSDKA--------KFENFNKA-LRITNVSEEDSG 288
Query: 242 EFTCRVANELGEV-------VTSACLIVDVVKGKDLT--SDGRLNIITVGGTSVLTIE-- 290
E+ C +N++G + V +A +D K L DGRL + G T++
Sbjct: 289 EYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRL-VCRANGNPKPTVQWM 347
Query: 291 ---------------DITGD----------DSGKYQVHVSNQHGSDSCYASVAV 319
++ GD YQ + SN+HG A V+V
Sbjct: 348 VNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP---ATPNARVTIREK 117
R+ ++P + P N I G+ R C G P P W +G+P A PN +
Sbjct: 308 RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD 367
Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
+ + + +Y N +G + A A + ++D
Sbjct: 368 TII----FRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 62 LTSSPRF---YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE 118
L ++P+F Y + +G T+R G+P P +W K + +TI E
Sbjct: 97 LQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE 156
Query: 119 DLRFLEISEVTLE-DAGLYTIKVENNYGSVEATARLEIMD 157
L + V + AG Y +++ N +G+V+A +EI D
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
LG+ + C + G+P P W + GK + + + L + ED G+YT
Sbjct: 21 LGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC 80
Query: 139 KVENNYGSVEATARL 153
N G VE +++L
Sbjct: 81 IATNEVGEVETSSKL 95
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P + ++++ G++ CQ+ P D I W+R + +L K ++ D + +
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPD--IKWYRFGK--ELIQSRKYKMSSDGRTH 63
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
L + EDEG +TC NE+GEV TS+ L++
Sbjct: 64 T----LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
+G+ VR G P P W K+G P N TI+ L +E+SE D G YT+
Sbjct: 214 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNH--TIKAGHVLTIMEVSE---RDTGNYTV 268
Query: 139 KVENNYGSVEAT--ARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
+ N + + L + P I +++ +++ + G + T C V +PP H
Sbjct: 269 ILTNPISKEKQSHVVSLVVYVPPQ-IGEKSLISPVDSYQY--GTTQTLTCTVYAIPP-PH 324
Query: 197 DISWF 201
I W+
Sbjct: 325 HIHWY 329
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
+P F +V + G QCSV G P P +W +G+P AR T + + L
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQP-IQYARSTC--EAGVAELH 67
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATA 151
I + ED G YT EN G V +A
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVSCSA 94
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
P + L++ +G +C V+ P P I+W N + I+ S
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPR---ITWLLNGQPIQY---------ARSTC 59
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+A L I PED G +TC N LG+V SA + V
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
+S P+ P ++ G++V VTG +W K K + + + E+
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
L I E G YT+ VEN GS +A L ++D
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 107/281 (38%), Gaps = 56/281 (19%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYT 137
+G++ F C+ G+P ++ G+ RV + +KE +R L I +EDAG+Y
Sbjct: 18 VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVV-QKEGVRSRLTIYNANIEDAGIYR 76
Query: 138 IKVENNYGSV-EATARLEIMDP---RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPP 193
+ + G EAT LEI R ++S P+ G+ C+V P
Sbjct: 77 CQATDAKGQTQEATVVLEIYQKLTFREVVS-PQEFK--------QGEDAEVVCRVSSSPA 127
Query: 194 NDHDISWFRNNRLIKLDSD-----------------------MKPEVQVDSKENL----V 226
+SW +N + SD + E +V+++ + +
Sbjct: 128 --PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 185
Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSAC--------LIVDVVKGKDLTSDGRLNI 278
I + +P + F E GE +T +C I GK + + +
Sbjct: 186 IVIVNVPPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-- 241
Query: 279 ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
I G + LT+ +I D G Y +N+ G D A + V
Sbjct: 242 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLED 132
N + G+ + F C +G P P SW ++GK N + ++ L + + D
Sbjct: 202 FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSD 259
Query: 133 AGLYTIKVENNYGSVEATARLEIM 156
G Y + N G E A L++
Sbjct: 260 GGPYVCRATNKAGEDEKQAFLQVF 283
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 268 KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
+ L + + I G ++L ++DIT D G Y+ V N +G DS YA + V+G
Sbjct: 41 RQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
+G V + C+++ + ++W+ R +L++ K E+ + +A L + +
Sbjct: 15 EGGHVKYVCKIENYDQSTQ-VTWYFGVR--QLENSEKYEITYEDG----VAILYVKDITK 67
Query: 238 EDEGEFTCRVANELGEVVTSACLIVDVVK 266
D+G + C+V N+ GE + A L V V+
Sbjct: 68 LDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE--KEDLRFLEISEVTLE 131
N +LG +V C G P P SW+KDG+P + +D L I V
Sbjct: 205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN 264
Query: 132 DAGLYTIKVENNYGSVEATARLEIM 156
D Y EN G +A+ L++
Sbjct: 265 DEAEYVCIAENKAGEQDASIHLKVF 289
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 33/186 (17%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
G+ C V P W G+ + K+D+RF+ +S L+ G+
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGR--------DVILKKDVRFIVLSNNYLQIRGIKKTD 166
Query: 140 VENNY---GSVEATARLEIMDPRAII-------SRPKVLNGLENLRCCDGDSVTFECQVQ 189
E Y G + A + D + I+ +R ++N NL G SVT C
Sbjct: 167 -EGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL----GQSVTLVCDAD 221
Query: 190 VVPPNDHDISWFRNNRLIK--LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
P + +SW ++ I+ + D K DS E L I +V DE E+ C
Sbjct: 222 GFP--EPTMSWTKDGEPIENEEEDDEKHIFSDDSSE------LTIRNVDKNDEAEYVCIA 273
Query: 248 ANELGE 253
N+ GE
Sbjct: 274 ENKAGE 279
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--KPATPNARVTIREKEDLRFL 123
P P N+ + T +C TG P P SW K+G P + R TI+E+ L
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRATIQEQGT---L 64
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
+I + + D G YT ++ G +A L++ +
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 28/200 (14%)
Query: 83 VRFQCSVTGQPAPWTSWSKDGKPATP----NARVTIREKEDLRFL----EISEVTLEDAG 134
V+ C+ +G +P W D T N ++T ++ + FL VT ED G
Sbjct: 22 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 81
Query: 135 LYTIKVE----NNYGSVEATARLEIMDPRAIISRPKVLNGLENL--RCCDGDSVTFECQV 188
YT V N+YG V+ +L ++ P S+P V N+ G+ C
Sbjct: 82 TYTCMVSEEGGNSYGEVKV--KLIVLVPP---SKPTV-----NIPSSATIGNRAVLTCSE 131
Query: 189 Q-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE-NLVIARLKIPHVYPEDEGEFTCR 246
Q PP+++ +WF++ ++ + S N L + D GE++C
Sbjct: 132 QDGSPPSEY--TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 189
Query: 247 VANELGEVVTSACLIVDVVK 266
N G +TS + ++ V+
Sbjct: 190 ARNGYGTPMTSNAVRMEAVE 209
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGLYTI 138
G + C+V G P P SW K+ K + ++ E + I+ V+ D+G Y +
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGL 296
Query: 139 KVENNYGSVEATARLEIMDP 158
V+N YGS + + + P
Sbjct: 297 VVKNKYGSETSDFTVSVFIP 316
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 22/170 (12%)
Query: 98 SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN------------NYG 145
+WS +G + RV + +L+I+E T D G Y +++ +
Sbjct: 141 NWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 200
Query: 146 SVEATARLEIMDPRAII--SRPKVLNGLENLRCC-DGDSVTFECQVQVVPPNDHDISWFR 202
EA A + + AI +R +VL GL ++ +G ++ C V PP ++SW +
Sbjct: 201 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP--EVSWLK 258
Query: 203 NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252
N + + D + + A I V D G++ V N+ G
Sbjct: 259 NEKALASDDHCNLKFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYG 303
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 268 KDLTSDGRLNI-ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
K L SD N+ G T+ TI ++ DSGKY + V N++GS++ +V+V
Sbjct: 261 KALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P +K G V+ C TG P W K K PN + +L F + V ++
Sbjct: 25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNK-EIPNGNTS-----ELIF---NAVHVK 75
Query: 132 DAGLYTIKVENNYG-SVEATARLEIMD-PRAI------ISRPKVLNGLE--NLRCCDGDS 181
DAG Y +V NN+ ++L++ D P + +S K+ +E + + G +
Sbjct: 76 DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGST 135
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
+ +C V V P H WF+N + L + K +P+V E +G
Sbjct: 136 LVLQC-VAVGSPIPH-YQWFKNE--LPLTHETK-------------KLYMVPYVDLEHQG 178
Query: 242 EFTCRVANE 250
+ C V N+
Sbjct: 179 TYWCHVYND 187
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
G T+ QC G P P W K+ P T E + + V LE G Y
Sbjct: 133 GSTLVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVDLEHQGTYWCH 183
Query: 140 VENNYGSVEATARLEIMDPRAIISRP 165
V N+ S ++ I+D + P
Sbjct: 184 VYNDRDSQDSKKVEIIIDELNNLGHP 209
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
+G V +C G P P W K +P A ++ L+I + LED G+Y
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDEGIYEC 182
Query: 139 KVENNYGSVEATARLEI 155
+ EN G + AR+ +
Sbjct: 183 EAENIRGKDKHQARIYV 199
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGLYTI 138
G + C+V G P P SW K+ K ++ E + I+ V+ D+G Y +
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 139 KVENNYGSVEATARLEIMDP 158
V+N YGS + + + P
Sbjct: 192 VVKNKYGSETSDFTVSVFIP 211
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 22/170 (12%)
Query: 98 SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN------------NYG 145
+WS +G + RV + +L+I+E T D G Y +++ +
Sbjct: 36 NWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 95
Query: 146 SVEATARLEIMDPRAII--SRPKVLNGLENLRCC-DGDSVTFECQVQVVPPNDHDISWFR 202
EA A + + AI +R +VL GL ++ +G ++ C V PP ++SW +
Sbjct: 96 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP--PEVSWLK 153
Query: 203 NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252
N + + + + A I V D G++ V N+ G
Sbjct: 154 NEKALAQTDHCNLKFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYG 198
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 281 VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
G T+ TI ++ DSGKY + V N++GS++ +V+V
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYT 137
+G++ F C+ G+P ++ G+ RV + +KE +R L I +EDAG+Y
Sbjct: 16 VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVV-QKEGVRSRLTIYNANIEDAGIYR 74
Query: 138 IKVENNYGSV-EATARLEIMDP---RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPP 193
+ + G EAT LEI R ++S P+ G+ C+V P
Sbjct: 75 CQATDAKGQTQEATVVLEIYQKLTFREVVS-PQEFK--------QGEDAEVVCRVSSSPA 125
Query: 194 NDHDISWFRNNRLIKLDSD 212
+SW +N + SD
Sbjct: 126 --PAVSWLYHNEEVTTISD 142
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----LEISEVT 129
N +L +V C G P P +W+KDG+P EK + L I +V
Sbjct: 22 NATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDN---EEKYSFNYDGSELIIKKVD 78
Query: 130 LEDAGLYTIKVENNYGSVEATARLEIM 156
D Y EN G +AT L++
Sbjct: 79 KSDEAEYICIAENKAGEQDATIHLKVF 105
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL-DSDMKPE 216
P ++ +R +N NL SVT C P + ++W ++ I+ D++ K
Sbjct: 11 PPSVRARQSTMNATANL----SQSVTLACDADGFP--EPTMTWTKDGEPIEQEDNEEKYS 64
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253
D E L I V DE E+ C N+ GE
Sbjct: 65 FNYDGSE------LIIKKVDKSDEAEYICIAENKAGE 95
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 17/200 (8%)
Query: 62 LTSSPRFYAVP------HNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTI 114
L P F AVP + + G+ C++ + +++W ++ +
Sbjct: 202 LKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 261
Query: 115 REKEDLRF-----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN 169
D + L IS + D+G++ N +GS T LE++D + I+ ++N
Sbjct: 262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-KGFINIFPMIN 320
Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR 229
+ DG++V + + P +H W NR + P+ + +S V +
Sbjct: 321 --TTVFVNDGENVDLIVEYEAFPKPEHQ-QWIYMNRTFTDKWEDYPKSENESNIRYV-SE 376
Query: 230 LKIPHVYPEDEGEFTCRVAN 249
L + + + G +T V+N
Sbjct: 377 LHLTRLKGTEGGTYTFLVSN 396
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 17/200 (8%)
Query: 62 LTSSPRFYAVP------HNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTI 114
L P F AVP + + G+ C++ + +++W ++ +
Sbjct: 177 LKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 236
Query: 115 REKEDLRF-----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN 169
D + L IS + D+G++ N +GS T LE++D + I+ ++N
Sbjct: 237 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-KGFINIFPMIN 295
Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR 229
+ DG++V + + P +H W NR + P+ + +S V +
Sbjct: 296 --TTVFVNDGENVDLIVEYEAFPKPEHQ-QWIYMNRTFTDKWEDYPKSENESNIRYV-SE 351
Query: 230 LKIPHVYPEDEGEFTCRVAN 249
L + + + G +T V+N
Sbjct: 352 LHLTRLKGTEGGTYTFLVSN 371
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 173 NLRCCDGDSVTFECQVQVV--PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN---LVI 227
N+ G + T CQ+QV PP H W R+ ++++L + +V + E +V+
Sbjct: 11 NITGARGLTGTLRCQLQVQGEPPEVH---WLRDGQILELADSTQTQVPLGEDEQDDWIVV 67
Query: 228 ARLKIPHVYPEDEGEFTCRV 247
++L+I + D G++ C V
Sbjct: 68 SQLRITSLQLSDTGQYQCLV 87
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
S P F P G +C V G+P P W K G+ + R++ L
Sbjct: 13 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA 160
++ DAG+Y + N G A A + +++P A
Sbjct: 73 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 10/144 (6%)
Query: 67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT--PNARVTIREKEDLRFLE 124
+ P G V+ CSV G P W KDG + + E+ + FL
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
+ V DAG Y +VE+ EI P + +E + F
Sbjct: 64 LKSVERSDAGRYWCQVEDG-------GETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPF 116
Query: 185 ECQVQVV-PPNDHDISWFRNNRLI 207
+ + V PP I W+R I
Sbjct: 117 QLSCEAVGPPEPVTIVWWRGTTKI 140
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYT 137
+G++ F C+ G+P ++ G+ RV + +KE +R L I +EDAG+Y
Sbjct: 14 VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVV-QKEGVRSRLTIYNANIEDAGIYR 72
Query: 138 IKVENNYGSV-EATARLEI 155
+ + G EAT LEI
Sbjct: 73 CQATDAKGQTQEATVVLEI 91
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
S P F P G +C V G+P P W K G+ + R++ L
Sbjct: 13 SPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA 160
++ DAG+Y + N G A A + +++P A
Sbjct: 73 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 94/255 (36%), Gaps = 53/255 (20%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
G + C P SW DG ++ + L IS +T +++GLYT +
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGN-----------IQQHTQELFISNITEKNSGLYTCQ 444
Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS 199
NN S + ++ + A + +P + + + D D+V F C+ + +
Sbjct: 445 A-NNSASGHSRTTVKTITVSAELPKPSISSN-NSKPVEDKDAVAFTCEPEA---QNTTYL 499
Query: 200 WFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC 259
W+ N + + + P +Q+ + L + +V D + C + N + S
Sbjct: 500 WWVNGQSLP----VSPRLQLSNGNR----TLTLFNVTRNDARAYVCGIQNSVS-ANRSDP 550
Query: 260 LIVDVVKGKDL----------------------------TSDGRLNIITVGGTSVLTIED 291
+ +DV+ G D R+N I T VL I
Sbjct: 551 VTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAK 610
Query: 292 ITGDDSGKYQVHVSN 306
IT +++G Y VSN
Sbjct: 611 ITPNNNGTYACFVSN 625
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 32/172 (18%)
Query: 81 DTVRFQCSVTGQPAPWTSW-SKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
D V F C Q A + W + P +P +++ R L + VT D Y +
Sbjct: 127 DAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLS----NGNRTLTLFNVTRNDTASYKCE 182
Query: 140 VENNYGSVEATARL--EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
+N + + + + + P A P N G+++ C PP +
Sbjct: 183 TQNPVSARRSDSVILNVLYGPDAPTISPL------NTSYRSGENLNLSCHAASNPPAQY- 235
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
SWF N Q ++E L IP++ + G +TC+ N
Sbjct: 236 -SWFVNGTF-----------QQSTQE------LFIPNITVNNSGSYTCQAHN 269
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 35.4 bits (80), Expect = 0.049, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
S P F P G +C V G+P P W K G+ + R++ L
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
++ DAG+Y + N G A A + +++P
Sbjct: 72 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG-KPATPNARVTIREKEDLRFLEISEVTL 130
P N+ + T C TG P P W KDG +T ++R I++ E+ L+I L
Sbjct: 15 PVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR--IKQLEN-GVLQIRYAKL 71
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMD 157
D G YT G +A +E+ +
Sbjct: 72 GDTGRYTCIASTPSGEATWSAYIEVQE 98
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 78 DLGDTVRFQCSVTGQPAP---WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAG 134
D G TV+F C G P P W S K A N R+T+ LE+ ++D G
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT---LEVRYAQVQDNG 454
Query: 135 LYTIKVENNYGSVEATARLEI 155
Y N G+ A L +
Sbjct: 455 TYLCIAANAGGNDSMPAHLHV 475
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL 225
K + GL N +GD+ T C++ P + W + + ++ D D Q S+ L
Sbjct: 10 KFIEGLRNEEATEGDTATLWCELSKAAP----VEWRKGHETLR-DGDRHSLRQDGSRCEL 64
Query: 226 VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTS 272
I L + D GE++C E TSA L V + + + S
Sbjct: 65 QIRGLAVV-----DAGEYSCVCGQER----TSATLTVRALPARFIES 102
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 22/155 (14%)
Query: 80 GDTVRFQCSVTGQ-PAPWTSWSKDGKPA---------------TPNARVTIREKEDLRFL 123
G++ C+VT P W + PA T + T RE D +
Sbjct: 18 GESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFS-I 76
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK--VLNGLENLRCCDGDS 181
IS +T DAG Y V+ GS + + ++ ++P V++G R +
Sbjct: 77 SISNITPADAGTYYC-VKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG-PAARATPQHT 134
Query: 182 VTFECQVQVVPPNDHDISWFRN-NRLIKLDSDMKP 215
V+F C+ P D + WF+N N L +++ P
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP 169
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 95 PWTS--WSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT 150
PW W+KDG+ + + +++++ +R L + V LED+G Y ++++ S T
Sbjct: 40 PWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFTVT 97
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 24/92 (26%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
P+A++ P +N L+ DSVT CQ P +D I WF N LI + +P
Sbjct: 6 PKAVLKLEPPWINVLQE------DSVTLTCQGARSPESD-SIQWFHNGNLIP--THTQPS 56
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
+ + N D GE+TC+
Sbjct: 57 YRFKANNN--------------DSGEYTCQTG 74
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 24/92 (26%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
P+A++ P +N L+ DSVT CQ P +D I WF N LI + +P
Sbjct: 3 PKAVLKLEPPWINVLQE------DSVTLTCQGARSPESD-SIQWFHNGNLIP--THTQPS 53
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
+ + N D GE+TC+
Sbjct: 54 YRFKANNN--------------DSGEYTCQTG 71
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 24/92 (26%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
P+A++ P +N L+ DSVT CQ P +D I WF N LI + +P
Sbjct: 3 PKAVLKLEPPWINVLQE------DSVTLTCQGARSPESD-SIQWFHNGNLIP--THTQPS 53
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
+ + N D GE+TC+
Sbjct: 54 YRFKANNN--------------DSGEYTCQTG 71
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 107 TPNARVTIREKEDLRF-------LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
TPN V +R L + VT++D G+YT V N+ G+ A+A L +
Sbjct: 376 TPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256
+SW N + K + V S L +V +D G +TC V+N +G
Sbjct: 371 SVSWITPNGTVMTHGAYKVRIAVLSD-----GTLNFTNVTVQDTGMYTCMVSNSVGNTTA 425
Query: 257 SACLIV 262
SA L V
Sbjct: 426 SATLNV 431
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 24/92 (26%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
P+A++ P +N L+ DSVT CQ P +D I WF N LI + +P
Sbjct: 3 PKAVLKLEPPWINVLQE------DSVTLTCQGARSPESD-SIQWFHNGNLIP--THTQPS 53
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
+ + N D GE+TC+
Sbjct: 54 YRFKANNN--------------DSGEYTCQTG 71
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 24/92 (26%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
P+A++ P +N L+ DSVT CQ P +D I WF N LI + +P
Sbjct: 3 PKAVLKLEPPWINVLQE------DSVTLTCQGARSPESD-SIQWFHNGNLIP--THTQPS 53
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
+ + N D GE+TC+
Sbjct: 54 YRFKANNN--------------DSGEYTCQTG 71
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P + G+++ QC + + A SW+KDG PN R + + +L+I T
Sbjct: 8 PEAYVVAPGESLELQCML--KDAAVISWTKDGVHLGPNNRTVLIGE----YLQIKGATPR 61
Query: 132 DAGLY 136
D+GLY
Sbjct: 62 DSGLY 66
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-----PNARVTIREKEDL 120
PR P + I G+ C G+P P W K G+ P + + L
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 121 RFLEI--SEVTLEDAGLYTIKVENNYG-SVEATARLEI 155
FL I + D G+Y N G +V A LE+
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD-MKPEVQVDSKE 223
P+++ +L G+ T C+ + P I W++ ++ D D + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRP--TPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256
+L R+ DEG + C N LGE V+
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
S P +++ +L +G +C+ PP + W N + + P + V
Sbjct: 6 SGPFIMDAPRDLNISEGRMAELKCRT---PPMS-SVKWLLPNGTVLSHASRHPRISV--- 58
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L L HV D G +TC V N G SA L V
Sbjct: 59 --LNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 106 ATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
A+ + R+++ L F S V L D G+YT V N G+ A+A L +
Sbjct: 50 ASRHPRISVLNDGTLNF---SHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Query: 52 SLNSAIRTRRLTSSPRFYAVPHNK---ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
+L + R + P+ H + I +G+ + G+P P W+K G P
Sbjct: 8 TLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD- 66
Query: 109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
+RV +R + + + D+G Y + V+ AT R+ +++
Sbjct: 67 TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVE 115
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 50 PYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
P++L+ A R+T R + VP G RF +V +P W +G +
Sbjct: 2 PFTLDHA---PRITLRMRSHRVP------CGQNTRFILNVQSKPTAEVKWYHNGVELQES 52
Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+++ + LEI + +D+G Y N G A L++
Sbjct: 53 SKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
G +L +++ G L I D DDSG Y+ +N G S YA++ V G
Sbjct: 46 GVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
>pdb|2Y7Q|B Chain B, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
pdb|2Y7Q|D Chain D, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 327
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLI--KLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
D T C +Q P D + W N + S +P + V +RL++
Sbjct: 238 DKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPR-KTKGSGFFVFSRLEVTRAEW 296
Query: 238 EDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
E + EF CR +E + V V GK
Sbjct: 297 EQKDEFICRAVHEAASPSQTVQRAVSVNPGK 327
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFL 123
+P+ + ++ G F+ V G+P P W K+G + R+ ED + L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARL 153
I +VT ED+ +K N G + A L
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFL 94
>pdb|4GRG|C Chain C, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|D Chain D, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 230
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN---LVIARLKIPHVY 236
D T C +Q P D + W N ++L Q + V +RL++
Sbjct: 134 DKRTLACLIQNFMPEDISVQWLHNE--VQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAE 191
Query: 237 PEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGR 275
E + EF CR +E + V V GK D +
Sbjct: 192 WEQKDEFICRAVHEAASPSQTVQRAVSVNPGKAADDDDK 230
>pdb|1F6A|B Chain B, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
pdb|1F6A|D Chain D, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
pdb|1FP5|A Chain A, Crystal Structure Analysis Of The Human Ige-Fc Cepsilon3-
Cepsilon4 Fragment
Length = 222
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN---LVIARLKIPHVY 236
D T C +Q P D + W N ++L Q + V +RL++
Sbjct: 133 DKRTLACLIQNFMPEDISVQWLHNE--VQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAE 190
Query: 237 PEDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
E + EF CR +E + V V GK
Sbjct: 191 WEQKDEFICRAVHEAASPSQTVQRAVSVNPGK 222
>pdb|3H9Y|A Chain A, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Y|B Chain B, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Y|E Chain E, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Z|A Chain A, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Z|B Chain B, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Z|C Chain C, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Z|D Chain D, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|A Chain A, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|B Chain B, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|C Chain C, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|D Chain D, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|E Chain E, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|F Chain F, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|4EZM|A Chain A, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|B Chain B, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|C Chain C, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|D Chain D, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|E Chain E, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|F Chain F, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
Length = 223
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN---LVIARLKIPHVY 236
D T C +Q P D + W N ++L Q + V +RL++
Sbjct: 134 DKRTLACLIQNFMPEDISVQWLHNE--VQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAE 191
Query: 237 PEDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
E + EF CR +E + V V GK
Sbjct: 192 WEQKDEFICRAVHEAASPSQTVQRAVSVNPGK 223
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 24/92 (26%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
P+A++ P+ +N L+ DSVT C+ P +D I WF N LI + +P
Sbjct: 3 PKAVLKLEPQWINVLQE------DSVTLTCRGTHSPESD-SIQWFHNGNLIP--THTQPS 53
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
+ + N D GE+TC+
Sbjct: 54 YRFKANNN--------------DSGEYTCQTG 71
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 85 FQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY 144
F+C V+ + W K+G P+ R+TI L I +V ED G YT V + Y
Sbjct: 28 FKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTF-VPDGY 85
Query: 145 GSVEATARLEIMD 157
++ +A+L ++
Sbjct: 86 -ALSLSAKLNFLE 97
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS--WFRNNRLIKLDSDMKPEVQVDSKE 223
+VL + +L + F+C+V +D ++ W++N +++P ++
Sbjct: 10 EVLQDIADLTVKAAEQAVFKCEV-----SDEKVTGKWYKNG------VEVRPSKRITISH 58
Query: 224 NLVIARLKIPHVYPEDEGEFT 244
+L I V PEDEG++T
Sbjct: 59 VGRFHKLVIDDVRPEDEGDYT 79
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
Query: 71 VPHNKICDLGDTVR----FQCSVTGQPAPWTSWSKDGKPATPN-------ARVTIREKED 119
VP N LG+T++ F C + W W+ G A P+ A V E
Sbjct: 448 VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSR 507
Query: 120 LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR 159
L L ++ VT D G Y V+ + E A ++ R
Sbjct: 508 LVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEER 547
>pdb|1XT5|A Chain A, Crystal Structure Of Vcbp3, Domain 1, From Branchiostoma
Floridae
Length = 135
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 30/98 (30%)
Query: 179 GDSVTFECQVQVV----PPNDHDISWF------RNNRLIKLDSDMKPE----VQVDSKE- 223
G +V C Q+ PP ISW R+ ++ K + + + E V+ DS +
Sbjct: 19 GGTVELPCSYQLANDTQPPV---ISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKE 75
Query: 224 ------------NLVIARLKIPHVYPEDEGEFTCRVAN 249
NL L++ HV+P+D G + C+VA
Sbjct: 76 SFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 113
>pdb|2FBO|J Chain J, Crystal Structure Of The Two Tandem V-Type Regions Of
Vcbp3 (V-Region-Containing Chitin Binding Protein) To
1.85 A
Length = 250
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 30/97 (30%)
Query: 179 GDSVTFECQVQVV----PPNDHDISWF------RNNRLIKLDSDMKPE----VQVDSKE- 223
G +V C Q+ PP ISW R+ ++ K + + + E V+ DS +
Sbjct: 17 GGTVELPCSYQLANDTQPP---VISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKE 73
Query: 224 ------------NLVIARLKIPHVYPEDEGEFTCRVA 248
NL L++ HV+P+D G + C+VA
Sbjct: 74 SFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVA 110
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
DSVT CQ P +D I WF N LI + +P + + N D
Sbjct: 17 DSVTLTCQGARSPESD-SIQWFHNGNLIP--THTQPSYRFKANNN--------------D 59
Query: 240 EGEFTCRVA 248
GE+TC+
Sbjct: 60 SGEYTCQTG 68
>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin-
Dinding Protein C, Slow-Type
Length = 103
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
V LE+ G+ V EC+V +D ++ WF+N I + ++V+ K++++
Sbjct: 10 VTKQLEDTTAYCGERVELECEVS---EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG 267
I I D E++ V G+ +SA L VD+ G
Sbjct: 67 I----IEGATKADAAEYS--VMTTGGQ--SSAKLSVDLKSG 99
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 272 SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
++GR+ + T S+ T+E +D G Y V V N G D +V V
Sbjct: 90 TEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 29/116 (25%)
Query: 71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSK----------------------------D 102
+P + G+ +R ++G PAP W K D
Sbjct: 24 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 83
Query: 103 GKP-ATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
K RV + +D + ED G+YT+ V+N G + ++++D
Sbjct: 84 KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 31.2 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
G T+ QC G P P W K+ P T E + + V LE G Y
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVDLEHQGTYWCH 68
Query: 140 VENNYGSVEATARLEIM 156
V N+ S + + ++EI+
Sbjct: 69 VYNDRDS-QDSKKVEII 84
>pdb|2WQR|A Chain A, The High Resolution Crystal Structure Of Ige Fc
pdb|2WQR|B Chain B, The High Resolution Crystal Structure Of Ige Fc
Length = 323
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLI--KLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
D T C +Q P D + W N + S +P + V +RL++
Sbjct: 235 DKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPR-KTKGSGFFVFSRLEVTRAEW 293
Query: 238 EDEGEFTCRVANE 250
E + EF CR +E
Sbjct: 294 EQKDEFICRAVHE 306
>pdb|1O0V|A Chain A, The Crystal Structure Of Ige Fc Reveals An Asymmetrically
Bent Conformation
pdb|1O0V|B Chain B, The Crystal Structure Of Ige Fc Reveals An Asymmetrically
Bent Conformation
Length = 327
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLI--KLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
D T C +Q P D + W N + S +P + V +RL++
Sbjct: 238 DKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPR-KTKGSGFFVFSRLEVTRAEW 296
Query: 238 EDEGEFTCRVANE 250
E + EF CR +E
Sbjct: 297 EQKDEFICRAVHE 309
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 83 VRFQCSVTGQPAPWTSWSKDGKPATP----NARVTIREKEDLRFL----EISEVTLEDAG 134
V+ C+ +G +P W D T N ++T ++ + FL VT ED G
Sbjct: 21 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 80
Query: 135 LYTIKVE----NNYGSVE 148
YT V N+YG V+
Sbjct: 81 TYTCMVSEEGGNSYGEVK 98
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P G TV C V QP+P W KDG L + E+ +
Sbjct: 17 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDG---------VPLPLPPSPVLILPEIGPQ 67
Query: 132 DAGLYT-IKVENNYGSVEATA-RLEIMDP 158
D G Y+ + +++G E+ A + I++P
Sbjct: 68 DQGTYSCVATHSSHGPQESRAVSISIIEP 96
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
L++L +G + T C + V + W N + ++P + ++ + L
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVA---APVKWCYGNNV------LRPGDKYSLRQEGAMLEL 65
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
+ ++ P+D G ++C G+ TSA L V +
Sbjct: 66 VVRNLRPQDSGRYSC----SFGDQTTSATLTVTAL 96
>pdb|3SGJ|C Chain C, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|C Chain C, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 204
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 165 PKVLNGLE--NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207
PK + LE R + DSVT +CQ P D WF N LI
Sbjct: 6 PKAVVFLEPQWYRVLEKDSVTLKCQ-GAYSPEDQSTQWFHNESLI 49
>pdb|3AY4|C Chain C, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 179
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 165 PKVLNGLE--NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207
PK + LE R + DSVT +CQ P D WF N LI
Sbjct: 4 PKAVVFLEPQWYRVLEKDSVTLKCQ-GAYSPEDQSTQWFHNESLI 47
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P G TV C V QP+P W KDG L + E+ +
Sbjct: 10 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDG---------VPLPLPPSPVLILPEIGPQ 60
Query: 132 DAGLYT-IKVENNYGSVEATA-RLEIMDP 158
D G Y+ + +++G E+ A + I++P
Sbjct: 61 DQGTYSCVATHSSHGPQESRAVSISIIEP 89
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 20/139 (14%)
Query: 76 ICDLGDTVRFQCSVTGQPAPWTSW-SKDGKPATPNARVTIREKEDLRFLEISEVTLEDAG 134
+ +GD+V CS TG +P+ SW ++ P N +VT + L ++ V+ +
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVT--NEGTTSTLTMNPVSFGNEH 67
Query: 135 LYTIKVENNYGSVEATARLEIM----DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
Y +E ++EI DP +S P LE G +T +C V
Sbjct: 68 SYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP-----LEA-----GKPITVKCSVAD 117
Query: 191 VPPNDH-DISWFRNNRLIK 208
V P D +I + + L+K
Sbjct: 118 VYPFDRLEIDLLKGDHLMK 136
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 20/139 (14%)
Query: 76 ICDLGDTVRFQCSVTGQPAPWTSW-SKDGKPATPNARVTIREKEDLRFLEISEVTLEDAG 134
+ +GD+V CS TG +P+ SW ++ P N +VT + L ++ V+ +
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVT--NEGTTSTLTMNPVSFGNEH 67
Query: 135 LYTIKVENNYGSVEATARLEIM----DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
Y +E ++EI DP +S P LE G +T +C V
Sbjct: 68 SYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP-----LEA-----GKPITVKCSVAD 117
Query: 191 VPPNDH-DISWFRNNRLIK 208
V P D +I + + L+K
Sbjct: 118 VYPFDRLEIDLLKGDHLMK 136
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 20/139 (14%)
Query: 76 ICDLGDTVRFQCSVTGQPAPWTSW-SKDGKPATPNARVTIREKEDLRFLEISEVTLEDAG 134
+ +GD+V CS TG +P+ SW ++ P N +VT + L ++ V+ +
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVT--NEGTTSTLTMNPVSFGNEH 67
Query: 135 LYTIKVENNYGSVEATARLEIM----DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
Y +E ++EI DP +S P LE G +T +C V
Sbjct: 68 SYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP-----LEA-----GKPITVKCSVAD 117
Query: 191 VPPNDH-DISWFRNNRLIK 208
V P D +I + + L+K
Sbjct: 118 VYPFDRLEIDLLKGDHLMK 136
>pdb|4GT7|A Chain A, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
pdb|4GT7|B Chain B, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
pdb|4GT7|C Chain C, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
pdb|4GT7|D Chain D, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
Length = 221
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN---LVIARLKIPHVY 236
D T C +Q P D + W N ++L Q + V +RL++
Sbjct: 134 DKRTLACLIQNFMPEDISVQWLHNE--VQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAE 191
Query: 237 PEDEGEFTCRVANELG 252
E + EF CR +E
Sbjct: 192 WEQKDEFICRAVHEAA 207
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGK--PATPNARVTIREKEDLRFLEISEVTLEDAGLYT 137
G+ V C V P+ SW +DG+ P++ + + I +LE++ + D G Y
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN 92
Query: 138 IKVENNYG 145
N G
Sbjct: 93 CTAVNRIG 100
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEA 149
L I+++T+ED+G Y K E+ YGS +A
Sbjct: 68 LRINDLTVEDSGTYRCKPESRYGSYDA 94
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 88 SVTGQPAPWTSWSKDGKPAT-----------PNARVTIREKEDLRFLEISEVTLEDAGLY 136
SV GQPAP W +G P A T+R L +++ T + G Y
Sbjct: 269 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG----CLRLNQPTHVNNGNY 324
Query: 137 TIKVENNYGSVEATARLEIMD 157
T+ N +G A+ MD
Sbjct: 325 TLLAANPFGQASASIMAAFMD 345
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
S P +++ +L +G +C+ PP + W N + + P + V +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT---PPMS-SVKWLLPNGTVLSHASRHPRISVLND 406
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
L HV D G +TC V N G SA L V
Sbjct: 407 -----GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 106 ATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
A+ + R+++ L F S V L D G+YT V N G+ A+A L +
Sbjct: 395 ASRHPRISVLNDGTLNF---SHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>pdb|3QG6|B Chain B, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG6|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG7|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 213
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 112 VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL 171
+T ++ FL++ VT+ED G Y E +Y T + A + P V
Sbjct: 70 ITRDTSKNQFFLQLHSVTIEDTGTYFCTREGDYWGQGTTLTVS----SAKTTAPSVYPLA 125
Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISW 200
G SVT C V+ P ++W
Sbjct: 126 PVCGDTTGSSVTLGCLVKGYFPEPVTLTW 154
>pdb|3O8X|C Chain C, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|C Chain C, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|C Chain C, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|C Chain C, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|C Chain C, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|C Chain C, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|C Chain C, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|C Chain C, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|G Chain G, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|C Chain C, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 209
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 21/139 (15%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNR---LIKLDSDMKPEVQVDSKENLVIARLKIPHV 235
G++ +C V P D+ + WF+ + L+ L V VD K+ R
Sbjct: 17 GENCVLQCNYSVTP--DNHLRWFKQDTGKGLVSL------TVLVDQKDKTSNGRYSA--T 66
Query: 236 YPEDEGEFTCRV-ANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITG 294
+D T + A L + T C++ D +G L GRL+ GT ++ I DI
Sbjct: 67 LDKDAKHSTLHITATLLDDTATYICVVGD--RGSAL---GRLHF--GAGTQLIVIPDIQN 119
Query: 295 DDSGKYQVHVSNQHGSDSC 313
D YQ+ S C
Sbjct: 120 PDPAVYQLRDSKSSDKSVC 138
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 88 SVTGQPAPWTSWSKDGKPAT-----------PNARVTIREKEDLRFLEISEVTLEDAGLY 136
SV GQPAP W +G P A T+R L +++ T + G Y
Sbjct: 23 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG----CLRLNQPTHVNNGNY 78
Query: 137 TIKVENNYGSVEATARLEIMD 157
T+ N +G A+ MD
Sbjct: 79 TLLAANPFGQASASIMAAFMD 99
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 88 SVTGQPAPWTSWSKDGKPAT-----------PNARVTIREKEDLRFLEISEVTLEDAGLY 136
SV GQPAP W +G P A T+R L +++ T + G Y
Sbjct: 27 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC----LRLNQPTHVNNGNY 82
Query: 137 TIKVENNYGSVEATARLEIMD 157
T+ N +G A+ MD
Sbjct: 83 TLLAANPFGQASASIMAAFMD 103
>pdb|3HE6|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|C Chain C, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3SCM|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
pdb|3TN0|C Chain C, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3QI9|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 207
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 21/139 (15%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNR---LIKLDSDMKPEVQVDSKENLVIARLKIPHV 235
G++ +C V P D+ + WF+ + L+ L V VD K+ R
Sbjct: 15 GENSVLQCNYSVTP--DNHLRWFKQDTGKGLVSL------TVLVDQKDKTSNGRYSA--T 64
Query: 236 YPEDEGEFTCRV-ANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITG 294
+D T + A L + T C++ D +G L GRL+ GT ++ I DI
Sbjct: 65 LDKDAKHSTLHITATLLDDTATYICVVGD--RGSAL---GRLHF--GAGTQLIVIPDIQN 117
Query: 295 DDSGKYQVHVSNQHGSDSC 313
D YQ+ S C
Sbjct: 118 PDPAVYQLRDSKSSDKSVC 136
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
G+ V +C ++ P W KD K + + + + + L I +L+DAG YT +
Sbjct: 23 GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCE 81
Query: 140 VENNYGSVEATARLEI 155
VE + ++TA L +
Sbjct: 82 VEAS----KSTASLHV 93
>pdb|3TO4|C Chain C, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 212
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G++ +C V P D+ + WF+ + L + V VD K+ R +
Sbjct: 15 GENSVLQCNYSVTP--DNHLRWFKQDTGKGL---VSLTVLVDQKDKTSNGRYSA--TLDK 67
Query: 239 DEGEFTCRV-ANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDS 297
D T + A L + T C++ D +G L GRL+ GT ++ I DI D
Sbjct: 68 DAKHSTLHITATLLDDTATYICVVGD--RGSAL---GRLHF--GAGTQLIVIPDIQNPDP 120
Query: 298 GKYQVHVSNQHGSDSC 313
YQ+ S C
Sbjct: 121 AVYQLRDSKSSDKSVC 136
>pdb|2I24|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain
pdb|2I25|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
pdb|2I25|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
Length = 121
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEA 149
L I+++T++D+G Y K E+ YGS +A
Sbjct: 68 LRINDLTVKDSGTYRCKPESRYGSYDA 94
>pdb|1E4K|C Chain C, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4J|A Chain A, Crystal Structure Of The Soluble Human Fc-Gamma Receptor
Iii
Length = 176
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207
P+A++ P+ + LE DSVT +CQ P D+ WF N LI
Sbjct: 7 PKAVVFLEPQWYSVLEK------DSVTLKCQ-GAYSPEDNSTQWFHNESLI 50
>pdb|1T83|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 176
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207
P+A++ P+ + LE DSVT +CQ P D+ WF N LI
Sbjct: 6 PKAVVFLEPQWYSVLEK------DSVTLKCQ-GAYSPEDNSTQWFHNESLI 49
>pdb|1FNL|A Chain A, Crystal Structure Of The Extracellular Domain Of A Human
Fcgriii
Length = 175
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207
P+A++ P+ + LE DSVT +CQ P D+ WF N LI
Sbjct: 6 PKAVVFLEPQWYSVLEK------DSVTLKCQ-GAYSPEDNSTQWFHNESLI 49
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
+ +R L ++ V +DAG+Y+ N+ G+ AT ++++
Sbjct: 242 KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
L + VT++D G YT V N+ G+ A+A L +
Sbjct: 370 LNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
+ +R L ++ V +DAG+Y+ N+ G+ AT ++++
Sbjct: 242 KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 88 SVTGQPAPWTSWSKDGKPAT-----------PNARVTIREKEDLRFLEISEVTLEDAGLY 136
SV GQPAP W +G P A T+R L +++ T + G Y
Sbjct: 23 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG----CLRLNQPTHVNNGNY 78
Query: 137 TIKVENNYGSVEATARLEIMD 157
T+ N +G A+ MD
Sbjct: 79 TLLAANPFGQASASIMAAFMD 99
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 269 DLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
D + DGR+ + G+S L I+D+ DSG+Y +++ G
Sbjct: 47 DKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 87
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 83 VRFQCSVTGQPAP--WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV 140
V QC++T ++ W+K+G T T + ++ + I++ ED+G Y V
Sbjct: 21 VTLQCNLTSSSHTLMYSYWTKNGVELT----ATRKNASNMEY-RINKPRAEDSGEYHC-V 74
Query: 141 ENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISW 200
+ + +A A +E+ I + N E G C+ V P+ +
Sbjct: 75 YHFVSAPKANATIEVKAAPDITGHKRSENKNE------GQDAMMYCK-SVGYPHPEWMWR 127
Query: 201 FRNNRLIKLDSDMKPEVQVDSKEN---LVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
+ N + + S+ + +KEN L I L+I ED GE+ C N +G S
Sbjct: 128 KKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT----EDPGEYECNATNSIGSASVS 183
Query: 258 ACLIVDV 264
L V V
Sbjct: 184 TVLRVRV 190
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
+PK+L ++ G T +V + D +W + + + PE+ VD+K
Sbjct: 2 KPKILTASRKIKIKAG--FTHNLEVDFIGAPDPTATWTVGDS----GAALAPELLVDAKS 55
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGE 253
+ + P D G + +V NELGE
Sbjct: 56 S--TTSIFFPSAKRADSGNYKLKVKNELGE 83
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 74 NKICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLED 132
++ +LG + +C ++ P WT K+G P + R+ + +K + L I+ ED
Sbjct: 16 DQTVNLGKEICLKCEISENIPGKWT---KNGLPVQESDRLKVVQKGRIHKLVIANALTED 72
Query: 133 AGLYTI 138
G Y
Sbjct: 73 EGDYVF 78
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 269 DLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
D + DGR+ + G+S L I+D+ DSG+Y +++ G
Sbjct: 47 DKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 87
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 145 GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN 204
GS ++ + I+ P+ +S L + V C++ V D +W+++
Sbjct: 1 GSSGSSGPVHILSPQDKVS----------LTFTTSERVVLTCELSRV---DFPATWYKDG 47
Query: 205 RLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
+ K++ V++D +++ RL +P +D GEF CR
Sbjct: 48 Q--KVEESELLVVKMDGRKH----RLILPEAKVQDSGEFECR 83
>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
Obscurin
Length = 115
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF 201
R ++ LE++ +G S TF C++ P N + WF
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRIS--PANYEPVHWF 48
>pdb|4EOW|H Chain H, Crystal Structure Of A Disease-Associated Anti-Human
Gm-Csf Autoantibody Mb007
Length = 228
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 91 GQPAPWTSW--SKDGKPA-----TPNARVTIREKEDLRFLEISEVTLEDAGLY 136
GQ W W ++ G PA T ++ D FLEIS + ED G+Y
Sbjct: 42 GQGLEWMGWINTRSGVPAYAQGFTGRFVFSLDTSVDTAFLEISSLKTEDTGIY 94
>pdb|1CT8|B Chain B, Catalytic Antibody 7c8 Complex
pdb|1CT8|D Chain D, Catalytic Antibody 7c8 Complex
Length = 220
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 91 GQPAPWTSWSKDGKPAT-------PNARVTIREKEDLRFLEISEVTLEDAGLY 136
GQ W +W G T AR+T+ +++ S +T ED+ +Y
Sbjct: 42 GQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIY 94
>pdb|1JHL|H Chain H, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 116
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE 148
A +T+ + ++++S T ED+ +Y ++NYG+++
Sbjct: 68 ATLTVDKSSSTAYMQLSSPTSEDSAVYYCTRDDNYGAMD 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,228,721
Number of Sequences: 62578
Number of extensions: 374245
Number of successful extensions: 1888
Number of sequences better than 100.0: 183
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 420
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)