Query psy1095
Match_columns 325
No_of_seqs 251 out of 2354
Neff 11.3
Searched_HMMs 46136
Date Fri Aug 16 22:37:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 4.1E-40 8.9E-45 294.0 24.5 293 11-323 271-615 (1051)
2 KOG3513|consensus 100.0 2E-38 4.4E-43 283.2 28.5 300 4-325 161-519 (1051)
3 KOG4221|consensus 100.0 1.9E-31 4.1E-36 238.3 20.6 299 10-324 70-420 (1381)
4 KOG4194|consensus 100.0 5E-28 1.1E-32 203.0 17.2 225 33-274 574-807 (873)
5 KOG4221|consensus 100.0 2.1E-28 4.6E-33 219.0 15.6 295 8-323 167-521 (1381)
6 KOG4222|consensus 99.9 2.5E-27 5.4E-32 211.0 14.4 292 12-321 163-510 (1281)
7 KOG4194|consensus 99.9 1.1E-25 2.3E-30 189.1 19.9 245 64-322 502-798 (873)
8 PHA02785 IL-beta-binding prote 99.9 2.5E-25 5.4E-30 184.9 21.1 236 10-255 60-319 (326)
9 PHA02785 IL-beta-binding prote 99.9 2.1E-23 4.5E-28 173.5 24.6 157 77-255 38-204 (326)
10 KOG4222|consensus 99.9 4E-24 8.6E-29 190.9 15.8 257 44-320 103-411 (1281)
11 PHA02826 IL-1 receptor-like pr 99.9 1.6E-20 3.5E-25 146.8 18.8 160 73-252 30-212 (227)
12 cd05762 Ig8_MLCK Eighth immuno 99.8 8E-18 1.7E-22 114.5 13.5 94 66-159 1-94 (98)
13 cd05747 Ig5_Titin_like M5, fif 99.7 2E-16 4.3E-21 106.9 12.8 90 64-153 2-91 (92)
14 cd05762 Ig8_MLCK Eighth immuno 99.7 1.9E-16 4.1E-21 107.7 12.3 97 165-269 1-97 (98)
15 cd05851 Ig3_Contactin-1 Third 99.7 1.2E-16 2.6E-21 106.6 10.8 87 65-155 1-87 (88)
16 PF07679 I-set: Immunoglobulin 99.7 4.7E-16 1E-20 105.0 13.0 90 66-155 1-90 (90)
17 cd05737 Ig_Myomesin_like_C C-t 99.7 1.8E-15 3.8E-20 102.1 12.6 85 71-155 7-92 (92)
18 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 2.5E-15 5.5E-20 99.6 12.9 82 74-155 4-86 (86)
19 PHA02826 IL-1 receptor-like pr 99.7 1.9E-16 4.1E-21 124.0 8.3 109 32-143 97-210 (227)
20 cd04975 Ig4_SCFR_like Fourth i 99.7 4.4E-15 9.6E-20 101.1 12.8 83 74-156 12-100 (101)
21 cd04968 Ig3_Contactin_like Thi 99.6 3.9E-15 8.5E-20 99.7 11.8 87 65-155 1-87 (88)
22 cd04972 Ig_TrkABC_d4 Fourth do 99.6 7E-15 1.5E-19 98.8 12.7 87 69-155 4-90 (90)
23 cd05869 Ig5_NCAM-1 Fifth immun 99.6 8.6E-15 1.9E-19 99.9 12.8 91 65-155 2-97 (97)
24 cd05730 Ig3_NCAM-1_like Third 99.6 6.9E-15 1.5E-19 100.1 12.1 91 65-157 1-94 (95)
25 cd05851 Ig3_Contactin-1 Third 99.6 3.1E-15 6.8E-20 99.8 9.8 86 165-262 2-87 (88)
26 cd05866 Ig1_NCAM-2 First immun 99.6 1.4E-14 3E-19 96.9 12.5 87 68-155 3-91 (92)
27 cd05728 Ig4_Contactin-2-like F 99.6 5.4E-15 1.2E-19 98.1 10.4 84 68-155 2-85 (85)
28 cd05745 Ig3_Peroxidasin Third 99.6 3.6E-15 7.8E-20 96.3 9.2 74 79-155 1-74 (74)
29 cd05892 Ig_Myotilin_C C-termin 99.6 7.8E-15 1.7E-19 94.1 10.5 73 83-155 1-75 (75)
30 cd05852 Ig5_Contactin-1 Fifth 99.6 4.9E-15 1.1E-19 94.8 9.2 73 80-155 1-73 (73)
31 cd05865 Ig1_NCAM-1 First immun 99.6 1.7E-14 3.6E-19 97.5 12.2 88 68-155 3-95 (96)
32 cd04975 Ig4_SCFR_like Fourth i 99.6 1.6E-14 3.5E-19 98.3 12.1 88 173-263 12-100 (101)
33 cd05870 Ig5_NCAM-2 Fifth immun 99.6 1.4E-14 2.9E-19 99.1 11.6 90 65-155 2-98 (98)
34 cd05748 Ig_Titin_like Immunogl 99.6 2.1E-14 4.5E-19 92.8 11.6 74 82-155 1-74 (74)
35 cd05859 Ig4_PDGFR-alpha Fourth 99.6 2.4E-14 5.3E-19 97.6 12.4 83 74-156 12-100 (101)
36 cd05732 Ig5_NCAM-1_like Fifth 99.6 2E-14 4.4E-19 98.1 11.9 90 65-155 2-96 (96)
37 cd05747 Ig5_Titin_like M5, fif 99.6 2.3E-14 4.9E-19 96.8 11.9 89 164-260 3-91 (92)
38 PF07679 I-set: Immunoglobulin 99.6 2.2E-14 4.7E-19 96.8 11.6 90 165-262 1-90 (90)
39 cd05891 Ig_M-protein_C C-termi 99.6 3.4E-14 7.4E-19 95.6 12.4 85 71-155 7-92 (92)
40 cd05737 Ig_Myomesin_like_C C-t 99.6 3.3E-14 7.1E-19 96.0 12.0 84 172-262 9-92 (92)
41 cd05723 Ig4_Neogenin Fourth im 99.6 2.8E-14 6.1E-19 91.1 11.1 71 82-155 1-71 (71)
42 cd05771 IgC_Tapasin_R Tapasin- 99.6 6.8E-14 1.5E-18 102.2 14.4 125 122-252 2-132 (139)
43 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 5.5E-14 1.2E-18 93.2 12.5 83 173-262 4-86 (86)
44 cd05892 Ig_Myotilin_C C-termin 99.6 2.4E-14 5.1E-19 91.9 10.2 75 182-262 1-75 (75)
45 cd05893 Ig_Palladin_C C-termin 99.6 2.9E-14 6.2E-19 91.7 10.6 73 83-155 1-75 (75)
46 cd07693 Ig1_Robo First immunog 99.6 4.8E-14 1E-18 97.2 12.3 91 65-155 1-99 (100)
47 cd05745 Ig3_Peroxidasin Third 99.6 1.2E-14 2.7E-19 93.7 8.6 74 178-262 1-74 (74)
48 cd05852 Ig5_Contactin-1 Fifth 99.6 1.7E-14 3.7E-19 92.3 8.9 73 179-262 1-73 (73)
49 cd05859 Ig4_PDGFR-alpha Fourth 99.6 3.2E-14 6.9E-19 97.0 10.7 89 173-263 12-100 (101)
50 cd05743 Ig_Perlecan_D2_like Im 99.6 5.8E-14 1.2E-18 91.6 11.3 73 80-152 1-73 (78)
51 cd05863 Ig2_VEGFR-3 Second imm 99.6 2.8E-14 6.1E-19 89.0 9.3 66 83-156 1-66 (67)
52 cd05735 Ig8_DSCAM Eight immuno 99.6 9.9E-14 2.1E-18 92.5 12.3 85 179-266 1-85 (88)
53 cd05867 Ig4_L1-CAM_like Fourth 99.6 8E-14 1.7E-18 90.4 11.6 75 179-262 1-75 (76)
54 cd05868 Ig4_NrCAM Fourth immun 99.6 4.7E-14 1E-18 91.3 10.3 75 80-156 1-76 (76)
55 cd05730 Ig3_NCAM-1_like Third 99.6 1.1E-13 2.4E-18 94.2 12.3 83 173-264 12-94 (95)
56 cd05744 Ig_Myotilin_C_like Imm 99.6 8.1E-14 1.8E-18 89.9 10.8 73 83-155 1-75 (75)
57 cd05857 Ig2_FGFR Second immuno 99.6 9.5E-14 2.1E-18 92.5 11.5 81 75-155 4-85 (85)
58 cd05867 Ig4_L1-CAM_like Fourth 99.6 9E-14 1.9E-18 90.2 11.0 74 80-155 1-75 (76)
59 cd05735 Ig8_DSCAM Eight immuno 99.6 1.5E-13 3.4E-18 91.5 12.4 80 80-159 1-85 (88)
60 cd04969 Ig5_Contactin_like Fif 99.6 5.6E-14 1.2E-18 90.4 9.8 73 80-155 1-73 (73)
61 cd05893 Ig_Palladin_C C-termin 99.6 6.9E-14 1.5E-18 89.9 10.0 75 182-262 1-75 (75)
62 cd04972 Ig_TrkABC_d4 Fourth do 99.6 1.2E-13 2.6E-18 92.8 11.5 83 172-262 8-90 (90)
63 cd05868 Ig4_NrCAM Fourth immun 99.6 1.2E-13 2.5E-18 89.5 11.0 75 179-262 1-75 (76)
64 cd05728 Ig4_Contactin-2-like F 99.5 5.4E-14 1.2E-18 93.3 9.3 81 170-262 5-85 (85)
65 cd04968 Ig3_Contactin_like Thi 99.5 2E-13 4.3E-18 91.4 12.1 84 167-262 4-87 (88)
66 cd05865 Ig1_NCAM-1 First immun 99.5 1.5E-13 3.3E-18 92.8 11.4 87 171-262 7-95 (96)
67 cd05848 Ig1_Contactin-5 First 99.5 2.5E-13 5.5E-18 91.7 12.4 81 66-148 2-86 (94)
68 cd05869 Ig5_NCAM-1 Fifth immun 99.5 3.1E-13 6.6E-18 92.2 12.9 92 165-262 3-97 (97)
69 cd05854 Ig6_Contactin-2 Sixth 99.5 2E-13 4.4E-18 90.3 11.6 78 81-158 1-84 (85)
70 cd04978 Ig4_L1-NrCAM_like Four 99.5 1.1E-13 2.3E-18 90.1 10.0 75 80-155 1-75 (76)
71 cd05863 Ig2_VEGFR-3 Second imm 99.5 1.1E-13 2.3E-18 86.3 9.2 65 182-262 1-65 (67)
72 cd05723 Ig4_Neogenin Fourth im 99.5 1.5E-13 3.2E-18 87.8 9.9 71 181-262 1-71 (71)
73 cd05773 Ig8_hNephrin_like Eigh 99.5 4E-13 8.6E-18 93.3 12.7 95 64-158 3-107 (109)
74 cd05891 Ig_M-protein_C C-termi 99.5 3E-13 6.5E-18 91.0 11.6 84 172-262 9-92 (92)
75 cd04973 Ig1_FGFR First immunog 99.5 1.4E-13 2.9E-18 89.9 9.6 78 72-154 1-78 (79)
76 cd05744 Ig_Myotilin_C_like Imm 99.5 2.6E-13 5.7E-18 87.5 10.7 75 182-262 1-75 (75)
77 cd05740 Ig_CEACAM_D4 Fourth im 99.5 2.9E-13 6.2E-18 90.7 11.1 86 66-155 2-90 (91)
78 cd05748 Ig_Titin_like Immunogl 99.5 2.4E-13 5.2E-18 87.8 10.2 74 181-262 1-74 (74)
79 cd04976 Ig2_VEGFR Second immun 99.5 2.2E-13 4.8E-18 86.8 9.8 70 83-156 1-70 (71)
80 cd04978 Ig4_L1-NrCAM_like Four 99.5 3E-13 6.5E-18 88.0 10.5 75 179-262 1-75 (76)
81 cd04969 Ig5_Contactin_like Fif 99.5 2E-13 4.3E-18 87.9 9.3 73 179-262 1-73 (73)
82 cd05857 Ig2_FGFR Second immuno 99.5 3.9E-13 8.5E-18 89.4 10.8 82 174-262 4-85 (85)
83 cd05746 Ig4_Peroxidasin Fourth 99.5 1.4E-13 3E-18 87.4 8.1 68 83-153 1-68 (69)
84 cd05854 Ig6_Contactin-2 Sixth 99.5 7.3E-13 1.6E-17 87.6 11.8 81 180-264 1-83 (85)
85 cd05850 Ig1_Contactin-2 First 99.5 1.1E-12 2.4E-17 88.6 13.0 79 66-148 2-86 (94)
86 cd05864 Ig2_VEGFR-2 Second imm 99.5 2.2E-13 4.7E-18 86.1 8.5 68 83-155 1-68 (70)
87 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 4.8E-13 1E-17 87.3 10.4 71 84-154 2-79 (81)
88 cd04977 Ig1_NCAM-1_like First 99.5 7.9E-13 1.7E-17 89.0 11.8 86 68-154 3-91 (92)
89 cd05732 Ig5_NCAM-1_like Fifth 99.5 8.3E-13 1.8E-17 90.1 11.9 88 171-262 8-96 (96)
90 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.4E-12 3E-17 89.1 12.8 88 171-260 8-97 (98)
91 cd05855 Ig_TrkB_d5 Fifth domai 99.5 4.9E-13 1.1E-17 86.1 9.8 70 85-154 3-77 (79)
92 cd05853 Ig6_Contactin-4 Sixth 99.5 4.4E-13 9.6E-18 87.6 9.7 78 81-158 1-84 (85)
93 cd05849 Ig1_Contactin-1 First 99.5 7.1E-13 1.5E-17 89.2 11.1 81 65-149 1-86 (93)
94 cd05743 Ig_Perlecan_D2_like Im 99.5 5.9E-13 1.3E-17 86.8 10.3 76 179-262 1-76 (78)
95 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1E-12 2.2E-17 89.8 11.7 91 165-262 3-98 (98)
96 cd05876 Ig3_L1-CAM Third immun 99.5 3.5E-13 7.7E-18 86.0 8.8 70 83-155 1-70 (71)
97 cd05760 Ig2_PTK7 Second immuno 99.5 8E-13 1.7E-17 85.8 10.6 72 83-156 1-75 (77)
98 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.2E-12 2.7E-17 89.4 12.0 88 65-153 2-97 (98)
99 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 6.7E-13 1.5E-17 83.9 9.8 68 80-153 1-68 (69)
100 cd05853 Ig6_Contactin-4 Sixth 99.5 6.2E-13 1.4E-17 86.9 9.7 83 180-264 1-83 (85)
101 cd04970 Ig6_Contactin_like Six 99.5 8.6E-13 1.9E-17 87.6 10.7 78 81-158 1-84 (85)
102 cd05855 Ig_TrkB_d5 Fifth domai 99.5 1.2E-12 2.5E-17 84.4 10.6 76 183-261 2-77 (79)
103 cd05864 Ig2_VEGFR-2 Second imm 99.5 3.7E-13 8E-18 85.0 8.1 68 182-262 1-68 (70)
104 cd05760 Ig2_PTK7 Second immuno 99.5 1E-12 2.3E-17 85.3 10.3 72 182-262 1-72 (77)
105 cd05856 Ig2_FGFRL1-like Second 99.5 9.9E-13 2.1E-17 86.9 10.3 77 76-154 5-81 (82)
106 cd05773 Ig8_hNephrin_like Eigh 99.5 2.5E-12 5.4E-17 89.4 12.6 86 178-266 22-108 (109)
107 cd05726 Ig4_Robo Fhird immunog 99.5 8.4E-13 1.8E-17 88.7 9.8 76 80-158 1-84 (90)
108 cd05749 Ig2_Tyro3_like Second 99.5 1.1E-12 2.3E-17 85.5 9.8 72 69-148 2-74 (81)
109 cd05722 Ig1_Neogenin First imm 99.5 1.2E-12 2.7E-17 88.9 10.5 84 68-154 2-94 (95)
110 cd05746 Ig4_Peroxidasin Fourth 99.5 5E-13 1.1E-17 84.9 8.0 68 182-260 1-68 (69)
111 cd05876 Ig3_L1-CAM Third immun 99.5 4.2E-13 9E-18 85.7 7.7 70 182-262 1-70 (71)
112 cd05724 Ig2_Robo Second immuno 99.5 1.1E-12 2.3E-17 87.6 10.0 75 71-148 2-78 (86)
113 cd07693 Ig1_Robo First immunog 99.5 2.2E-12 4.9E-17 88.8 12.0 92 165-262 2-99 (100)
114 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 2.1E-12 4.5E-17 84.3 11.0 77 183-261 2-79 (81)
115 cd05736 Ig2_Follistatin_like S 99.4 1.4E-12 3E-17 84.7 10.0 74 83-156 1-74 (76)
116 cd05756 Ig1_IL1R_like First im 99.4 4.4E-13 9.6E-18 90.2 7.8 80 74-155 8-94 (94)
117 cd05848 Ig1_Contactin-5 First 99.4 2.7E-12 6E-17 86.7 11.7 82 165-256 2-87 (94)
118 cd05763 Ig_1 Subgroup of the i 99.4 8E-13 1.7E-17 85.5 8.6 71 83-155 1-74 (75)
119 cd05850 Ig1_Contactin-2 First 99.4 4.5E-12 9.8E-17 85.7 12.6 82 165-256 2-87 (94)
120 cd05764 Ig_2 Subgroup of the i 99.4 1.2E-12 2.7E-17 84.5 9.4 73 80-155 1-74 (74)
121 cd04976 Ig2_VEGFR Second immun 99.4 1.6E-12 3.4E-17 82.9 9.6 69 182-262 1-69 (71)
122 cd05740 Ig_CEACAM_D4 Fourth im 99.4 2.5E-12 5.4E-17 86.1 10.9 78 173-262 12-90 (91)
123 cd05725 Ig3_Robo Third immunog 99.4 8.6E-13 1.9E-17 83.9 8.1 69 83-155 1-69 (69)
124 cd05722 Ig1_Neogenin First imm 99.4 2.4E-12 5.2E-17 87.5 10.7 83 170-261 5-94 (95)
125 cd04973 Ig1_FGFR First immunog 99.4 1.1E-12 2.4E-17 85.6 8.4 77 173-262 3-79 (79)
126 cd05858 Ig3_FGFR-2 Third immun 99.4 1.8E-12 4E-17 87.0 9.6 76 80-155 1-89 (90)
127 cd05866 Ig1_NCAM-2 First immun 99.4 5.3E-12 1.1E-16 84.4 11.6 83 171-262 7-91 (92)
128 cd04970 Ig6_Contactin_like Six 99.4 2.2E-12 4.7E-17 85.7 9.7 83 180-264 1-83 (85)
129 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 2.3E-12 5E-17 81.4 9.2 68 179-260 1-68 (69)
130 cd05856 Ig2_FGFRL1-like Second 99.4 1.8E-12 3.9E-17 85.7 9.1 78 175-262 5-82 (82)
131 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 2.4E-12 5.1E-17 82.9 9.2 70 83-155 1-73 (74)
132 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 3.4E-12 7.3E-17 82.2 9.8 72 182-262 1-73 (74)
133 cd05752 Ig1_FcgammaR_like Frst 99.4 7.5E-13 1.6E-17 85.6 6.7 67 66-143 1-68 (78)
134 cd05731 Ig3_L1-CAM_like Third 99.4 2E-12 4.4E-17 82.8 8.6 70 83-155 1-70 (71)
135 cd05849 Ig1_Contactin-1 First 99.4 6.4E-12 1.4E-16 84.5 11.3 81 165-256 2-86 (93)
136 cd04974 Ig3_FGFR Third immunog 99.4 1.5E-12 3.3E-17 87.3 8.0 76 80-155 1-89 (90)
137 cd04974 Ig3_FGFR Third immunog 99.4 3.9E-12 8.5E-17 85.3 9.8 82 179-262 1-89 (90)
138 cd05750 Ig_Pro_neuregulin Immu 99.4 2.9E-12 6.2E-17 83.1 8.9 69 83-151 1-73 (75)
139 cd05736 Ig2_Follistatin_like S 99.4 5E-12 1.1E-16 82.0 10.0 74 182-263 1-74 (76)
140 cd05763 Ig_1 Subgroup of the i 99.4 2.7E-12 5.7E-17 83.1 8.6 73 182-262 1-74 (75)
141 cd05858 Ig3_FGFR-2 Third immun 99.4 4.9E-12 1.1E-16 84.9 10.1 82 179-262 1-89 (90)
142 cd05765 Ig_3 Subgroup of the i 99.4 2.7E-12 5.9E-17 84.5 8.6 76 80-155 1-81 (81)
143 cd05756 Ig1_IL1R_like First im 99.4 2.1E-12 4.5E-17 86.9 8.1 82 173-262 8-94 (94)
144 cd05731 Ig3_L1-CAM_like Third 99.4 2.1E-12 4.6E-17 82.7 7.8 70 182-262 1-70 (71)
145 cd05771 IgC_Tapasin_R Tapasin- 99.4 1.5E-12 3.3E-17 95.1 8.0 111 34-144 2-131 (139)
146 cd05749 Ig2_Tyro3_like Second 99.4 6.4E-12 1.4E-16 81.8 10.1 71 170-256 4-75 (81)
147 cd07702 Ig2_VEGFR-1 Second imm 99.4 4.7E-12 1E-16 80.1 9.1 66 83-152 1-67 (72)
148 cd05725 Ig3_Robo Third immunog 99.4 3.8E-12 8.2E-17 80.9 8.7 69 182-262 1-69 (69)
149 cd05764 Ig_2 Subgroup of the i 99.4 4E-12 8.6E-17 82.1 8.8 73 179-262 1-74 (74)
150 cd05752 Ig1_FcgammaR_like Frst 99.4 2.7E-12 5.7E-17 83.1 7.7 67 166-250 2-68 (78)
151 cd04977 Ig1_NCAM-1_like First 99.4 1.2E-11 2.6E-16 83.2 11.1 83 171-261 7-91 (92)
152 cd05724 Ig2_Robo Second immuno 99.4 8.1E-12 1.8E-16 83.3 10.1 80 172-261 4-85 (86)
153 cd05726 Ig4_Robo Fhird immunog 99.4 5.8E-12 1.3E-16 84.6 9.1 77 179-264 1-83 (90)
154 cd04967 Ig1_Contactin First Ig 99.4 1.8E-11 3.8E-16 82.4 11.4 79 66-148 2-86 (91)
155 cd05898 Ig5_KIRREL3 Fifth immu 99.4 3E-11 6.5E-16 81.1 12.3 91 169-260 6-97 (98)
156 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 1.3E-11 2.9E-16 81.4 10.3 77 80-156 1-83 (84)
157 cd05882 Ig1_Necl-1 First (N-te 99.4 1.4E-11 3.1E-16 82.8 10.5 81 73-154 5-94 (95)
158 cd05733 Ig6_L1-CAM_like Sixth 99.3 5.4E-12 1.2E-16 81.9 7.5 66 83-148 1-70 (77)
159 cd07702 Ig2_VEGFR-1 Second imm 99.3 8.3E-12 1.8E-16 79.0 7.9 69 182-261 1-69 (72)
160 cd07701 Ig1_Necl-3 First (N-te 99.3 2.4E-11 5.3E-16 82.0 10.7 82 72-154 4-94 (95)
161 cd05750 Ig_Pro_neuregulin Immu 99.3 1.5E-11 3.2E-16 79.7 9.3 72 182-259 1-74 (75)
162 cd05873 Ig_Sema4D_like Immunog 99.3 3E-11 6.4E-16 79.3 10.6 68 71-143 2-70 (87)
163 KOG3515|consensus 99.3 2E-11 4.3E-16 108.4 12.7 283 31-324 161-497 (741)
164 cd05765 Ig_3 Subgroup of the i 99.3 1.5E-11 3.3E-16 80.9 9.1 77 179-262 1-81 (81)
165 cd05742 Ig1_VEGFR_like First i 99.3 2.3E-11 5E-16 80.5 9.6 81 179-262 1-83 (84)
166 cd05742 Ig1_VEGFR_like First i 99.3 1.6E-11 3.4E-16 81.3 8.7 76 80-155 1-83 (84)
167 cd05875 Ig6_hNeurofascin_like 99.3 1.9E-11 4.2E-16 79.1 8.8 65 83-149 1-71 (77)
168 cd05874 Ig6_NrCAM Sixth immuno 99.3 1.6E-11 3.5E-16 79.5 8.3 65 83-149 1-71 (77)
169 cd05729 Ig2_FGFR_like Second i 99.3 7.3E-11 1.6E-15 78.5 11.6 79 76-154 5-84 (85)
170 cd04967 Ig1_Contactin First Ig 99.3 5.8E-11 1.3E-15 79.9 11.2 82 165-256 2-87 (91)
171 cd05898 Ig5_KIRREL3 Fifth immu 99.3 8.9E-11 1.9E-15 78.9 11.9 88 65-153 2-97 (98)
172 cd05754 Ig3_Perlecan_like Thir 99.3 3E-11 6.5E-16 80.2 9.4 79 69-153 5-84 (85)
173 cd05895 Ig_Pro_neuregulin-1 Im 99.3 3.2E-11 7E-16 78.2 9.4 69 83-151 1-74 (76)
174 cd05733 Ig6_L1-CAM_like Sixth 99.3 2.4E-11 5.1E-16 78.9 8.1 67 182-256 1-71 (77)
175 cd04979 Ig_Semaphorin_C Immuno 99.3 4.8E-11 1E-15 80.0 9.6 80 72-156 3-87 (89)
176 cd05874 Ig6_NrCAM Sixth immuno 99.3 4.7E-11 1E-15 77.3 9.0 67 182-256 1-71 (77)
177 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 1E-10 2.2E-15 77.2 10.3 80 179-262 1-82 (84)
178 cd05895 Ig_Pro_neuregulin-1 Im 99.3 8.3E-11 1.8E-15 76.2 9.4 72 182-259 1-75 (76)
179 cd05753 Ig2_FcgammaR_like Seco 99.3 4.1E-11 8.8E-16 78.8 7.9 68 70-145 4-72 (83)
180 cd05734 Ig7_DSCAM Seventh immu 99.2 5.7E-11 1.2E-15 77.6 8.4 69 83-154 1-78 (79)
181 cd05875 Ig6_hNeurofascin_like 99.2 8.6E-11 1.9E-15 76.0 9.0 68 182-257 1-72 (77)
182 cd05882 Ig1_Necl-1 First (N-te 99.2 1.7E-10 3.7E-15 77.6 10.5 73 172-249 5-83 (95)
183 cd05862 Ig1_VEGFR First immuno 99.2 1.4E-10 3.1E-15 76.7 9.7 85 179-263 1-85 (86)
184 cd05734 Ig7_DSCAM Seventh immu 99.2 9.8E-11 2.1E-15 76.5 8.7 71 182-261 1-78 (79)
185 cd05729 Ig2_FGFR_like Second i 99.2 2.2E-10 4.7E-15 76.2 10.6 80 175-261 5-84 (85)
186 cd05754 Ig3_Perlecan_like Thir 99.2 1.1E-10 2.3E-15 77.5 8.9 75 172-260 9-84 (85)
187 smart00410 IG_like Immunoglobu 99.2 6.1E-10 1.3E-14 73.9 12.7 83 73-155 2-85 (86)
188 smart00409 IG Immunoglobulin. 99.2 6.1E-10 1.3E-14 73.9 12.7 83 73-155 2-85 (86)
189 cd05757 Ig2_IL1R_like Second i 99.2 1E-10 2.2E-15 78.2 8.6 72 75-150 5-81 (92)
190 cd05873 Ig_Sema4D_like Immunog 99.2 2.3E-10 4.9E-15 75.2 9.6 68 172-251 4-71 (87)
191 cd05860 Ig4_SCFR Fourth immuno 99.2 1.3E-09 2.7E-14 72.7 12.1 87 173-262 12-99 (101)
192 cd05757 Ig2_IL1R_like Second i 99.2 2.7E-10 5.8E-15 76.1 8.8 79 174-262 5-86 (92)
193 cd05717 Ig1_Necl-1-3_like Firs 99.2 6.9E-10 1.5E-14 75.3 10.4 82 72-154 4-94 (95)
194 cd07701 Ig1_Necl-3 First (N-te 99.1 5.7E-10 1.2E-14 75.4 9.5 83 172-262 5-95 (95)
195 PF13895 Ig_2: Immunoglobulin 99.1 5.5E-10 1.2E-14 73.3 9.2 78 66-155 2-80 (80)
196 cd04979 Ig_Semaphorin_C Immuno 99.1 5.8E-10 1.3E-14 74.7 9.0 81 173-262 5-86 (89)
197 cd05753 Ig2_FcgammaR_like Seco 99.1 3.4E-10 7.3E-15 74.4 7.7 68 173-255 8-75 (83)
198 cd05727 Ig2_Contactin-2-like S 99.1 1.9E-10 4.1E-15 76.6 6.1 71 73-145 11-84 (96)
199 cd07690 Ig1_CD4 First immunogl 99.1 5.7E-10 1.2E-14 74.6 8.3 70 76-145 3-89 (94)
200 cd05871 Ig_Semaphorin_classIII 99.1 1.5E-09 3.2E-14 72.6 10.0 78 75-157 6-90 (91)
201 cd05881 Ig1_Necl-2 First (N-te 99.1 3E-09 6.6E-14 71.0 11.4 71 73-143 5-84 (95)
202 smart00408 IGc2 Immunoglobulin 99.1 5.8E-10 1.2E-14 69.3 7.4 62 79-144 1-62 (63)
203 PF00047 ig: Immunoglobulin do 99.1 7E-10 1.5E-14 69.3 7.1 61 80-140 1-64 (64)
204 cd05862 Ig1_VEGFR First immuno 99.1 2.1E-09 4.6E-14 71.1 9.4 77 80-156 1-85 (86)
205 cd05897 Ig2_IL1R2_like Second 99.0 1.7E-09 3.6E-14 72.2 8.2 70 75-145 5-79 (95)
206 cd05845 Ig2_L1-CAM_like Second 99.0 6E-10 1.3E-14 74.1 5.9 70 72-144 10-82 (95)
207 cd05727 Ig2_Contactin-2-like S 99.0 9E-10 2E-14 73.4 6.7 74 173-254 12-86 (96)
208 cd05872 Ig_Sema4B_like Immunog 99.0 2.7E-09 5.8E-14 69.5 8.7 78 74-156 5-83 (85)
209 PF13895 Ig_2: Immunoglobulin 99.0 3.7E-09 8.1E-14 69.2 9.4 70 174-261 9-79 (80)
210 smart00408 IGc2 Immunoglobulin 99.0 2.8E-09 6E-14 66.1 8.1 63 178-252 1-63 (63)
211 cd05860 Ig4_SCFR Fourth immuno 99.0 1.2E-08 2.7E-13 68.0 11.2 83 74-156 12-100 (101)
212 PHA03376 BARF1; Provisional 99.0 8.1E-09 1.8E-13 75.5 10.8 123 74-204 20-162 (221)
213 cd05871 Ig_Semaphorin_classIII 99.0 6.8E-09 1.5E-13 69.4 9.3 79 174-263 6-89 (91)
214 cd07690 Ig1_CD4 First immunogl 99.0 3.9E-09 8.5E-14 70.5 7.9 77 175-254 3-91 (94)
215 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 5.1E-09 1.1E-13 70.0 8.2 80 74-155 9-104 (104)
216 cd05885 Ig2_Necl-4 Second immu 99.0 7.7E-09 1.7E-13 66.4 8.5 69 181-254 1-69 (80)
217 smart00409 IG Immunoglobulin. 99.0 2.5E-08 5.3E-13 66.0 11.5 82 173-262 3-85 (86)
218 smart00410 IG_like Immunoglobu 99.0 2.5E-08 5.3E-13 66.0 11.5 82 173-262 3-85 (86)
219 cd05897 Ig2_IL1R2_like Second 98.9 5.7E-09 1.2E-13 69.7 7.9 75 174-255 5-82 (95)
220 KOG3515|consensus 98.9 2.5E-08 5.4E-13 89.2 13.8 299 12-323 238-593 (741)
221 PF00047 ig: Immunoglobulin do 98.9 1.8E-09 3.9E-14 67.4 4.6 63 179-247 1-64 (64)
222 cd04983 IgV_TCR_alpha_like Imm 98.9 1.3E-08 2.8E-13 71.0 9.3 76 69-144 2-93 (109)
223 cd05717 Ig1_Necl-1-3_like Firs 98.9 2E-08 4.3E-13 68.1 9.7 83 173-261 6-94 (95)
224 cd05885 Ig2_Necl-4 Second immu 98.9 7.4E-09 1.6E-13 66.5 7.0 62 83-146 2-68 (80)
225 cd05774 Ig_CEACAM_D1 First imm 98.9 2.3E-08 4.9E-13 68.4 9.4 83 69-154 2-104 (105)
226 cd05845 Ig2_L1-CAM_like Second 98.9 5.7E-09 1.2E-13 69.4 6.2 72 172-253 11-84 (95)
227 cd05899 IgV_TCR_beta Immunoglo 98.9 1.9E-08 4.2E-13 70.2 8.8 74 69-143 2-94 (110)
228 cd05751 Ig1_LILRB1_like First 98.9 1.7E-08 3.6E-13 67.7 7.8 74 65-143 2-75 (91)
229 cd05759 Ig2_KIRREL3-like Secon 98.9 4.3E-08 9.4E-13 64.4 9.6 76 182-259 2-77 (82)
230 cd04980 IgV_L_kappa Immunoglob 98.8 3.3E-08 7.1E-13 68.5 9.0 75 68-142 3-92 (106)
231 cd05751 Ig1_LILRB1_like First 98.8 3.2E-08 7E-13 66.3 8.4 73 165-250 3-75 (91)
232 cd04982 IgV_TCR_gamma Immunogl 98.8 4.3E-08 9.3E-13 69.2 9.0 73 70-142 3-98 (116)
233 cd05879 Ig_P0 Immunoglobulin ( 98.8 1.2E-07 2.6E-12 66.2 11.0 82 173-254 7-106 (116)
234 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 4.9E-08 1.1E-12 65.4 8.2 84 173-262 9-104 (104)
235 cd05759 Ig2_KIRREL3-like Secon 98.8 6.7E-08 1.5E-12 63.5 8.8 64 82-145 1-70 (82)
236 cd05900 Ig_Aggrecan Immunoglob 98.8 8.7E-08 1.9E-12 66.4 9.6 78 79-156 1-109 (112)
237 PF13927 Ig_3: Immunoglobulin 98.8 1.1E-08 2.3E-13 66.1 4.5 74 65-142 1-75 (75)
238 cd05872 Ig_Sema4B_like Immunog 98.8 6.9E-08 1.5E-12 62.9 8.0 64 173-249 5-68 (85)
239 cd05713 Ig_MOG_like Immunoglob 98.8 1.5E-07 3.2E-12 64.5 10.1 76 80-155 1-99 (100)
240 cd05714 Ig_CSPGs_LP Immunoglob 98.8 1.7E-07 3.6E-12 65.0 10.4 79 79-157 1-104 (106)
241 cd00098 IgC Immunoglobulin Con 98.8 5.9E-08 1.3E-12 65.8 8.0 77 177-253 11-87 (95)
242 cd05711 Ig_FcalphaRI Immunoglo 98.7 7.8E-08 1.7E-12 64.8 8.0 74 66-141 2-75 (94)
243 cd05879 Ig_P0 Immunoglobulin ( 98.7 1.6E-07 3.5E-12 65.5 9.8 75 71-145 4-104 (116)
244 cd05881 Ig1_Necl-2 First (N-te 98.7 4E-07 8.8E-12 60.9 11.0 70 173-250 6-84 (95)
245 cd05714 Ig_CSPGs_LP Immunoglob 98.7 2.9E-07 6.3E-12 63.7 10.7 85 178-263 1-103 (106)
246 cd00099 IgV Immunoglobulin var 98.7 1E-07 2.3E-12 66.0 8.2 70 76-145 2-91 (105)
247 cd05878 Ig_Aggrecan_like Immun 98.7 2.1E-07 4.6E-12 64.6 9.6 79 79-157 1-108 (110)
248 PF13927 Ig_3: Immunoglobulin 98.7 4.9E-08 1.1E-12 62.9 6.0 74 165-249 2-75 (75)
249 cd05718 Ig1_PVR_like First imm 98.7 2.6E-07 5.5E-12 63.1 9.7 75 81-155 1-97 (98)
250 cd05877 Ig_LP_like Immunoglobu 98.7 3E-07 6.5E-12 63.7 10.0 78 79-156 1-103 (106)
251 cd04983 IgV_TCR_alpha_like Imm 98.7 1.7E-07 3.7E-12 65.3 8.3 77 171-251 5-93 (109)
252 PF07686 V-set: Immunoglobulin 98.7 6.4E-07 1.4E-11 62.9 11.2 88 68-155 4-114 (114)
253 cd05775 Ig_SLAM-CD84_like_N N- 98.6 1.5E-07 3.3E-12 63.8 7.2 78 78-155 2-96 (97)
254 cd05877 Ig_LP_like Immunoglobu 98.6 6.9E-07 1.5E-11 61.9 10.5 85 178-263 1-103 (106)
255 cd05755 Ig2_ICAM-1_like Second 98.6 2.8E-07 6E-12 62.0 8.0 79 67-145 3-86 (100)
256 cd05741 Ig_CEACAM_D1_like Firs 98.6 2.8E-07 6.1E-12 62.1 8.2 72 80-154 1-91 (92)
257 cd05878 Ig_Aggrecan_like Immun 98.6 8.6E-07 1.9E-11 61.6 10.6 86 178-263 1-107 (110)
258 cd05774 Ig_CEACAM_D1 First imm 98.6 3.7E-07 8E-12 62.5 8.6 87 172-260 6-103 (105)
259 cd05880 Ig_EVA1 Immunoglobulin 98.6 7.4E-07 1.6E-11 62.5 10.3 81 172-252 6-103 (115)
260 cd05900 Ig_Aggrecan Immunoglob 98.6 5.5E-07 1.2E-11 62.4 9.3 85 178-262 1-108 (112)
261 cd05883 Ig2_Necl-2 Second immu 98.6 1E-06 2.3E-11 56.8 9.6 74 83-156 2-80 (82)
262 cd04984 IgV_L_lambda Immunoglo 98.6 4.9E-07 1.1E-11 61.6 8.4 67 76-142 2-84 (98)
263 cd05883 Ig2_Necl-2 Second immu 98.6 1.9E-06 4.1E-11 55.6 10.3 77 182-262 2-79 (82)
264 cd05880 Ig_EVA1 Immunoglobulin 98.6 1E-06 2.2E-11 61.8 9.9 75 71-145 4-103 (115)
265 cd05718 Ig1_PVR_like First imm 98.6 1.1E-06 2.5E-11 59.8 9.8 82 180-262 1-97 (98)
266 cd07694 Ig2_CD4 Second immunog 98.6 1.7E-06 3.8E-11 55.6 9.7 76 75-156 9-86 (88)
267 cd07699 IgC_L Immunoglobulin C 98.6 4.6E-07 1E-11 61.7 7.6 77 176-252 14-90 (100)
268 smart00407 IGc1 Immunoglobulin 98.5 1.3E-06 2.9E-11 56.1 9.2 70 182-251 2-71 (75)
269 cd05713 Ig_MOG_like Immunoglob 98.5 1.5E-06 3.2E-11 59.5 9.7 84 179-262 1-99 (100)
270 cd05715 Ig_P0-like Immunoglobu 98.5 1.1E-06 2.3E-11 61.9 9.2 75 71-145 4-104 (116)
271 cd05847 IgC_CH2_IgE CH2 domain 98.5 1.4E-06 3E-11 58.4 9.1 76 178-253 13-88 (94)
272 cd05755 Ig2_ICAM-1_like Second 98.5 1.1E-06 2.3E-11 59.2 8.5 80 170-253 7-87 (100)
273 cd07698 IgC_MHC_I_alpha3 Class 98.5 2.5E-06 5.4E-11 57.4 10.3 71 179-252 14-84 (93)
274 cd07706 IgV_TCR_delta Immunogl 98.5 1.1E-06 2.4E-11 61.9 8.9 75 68-142 2-93 (116)
275 cd05715 Ig_P0-like Immunoglobu 98.5 2.1E-06 4.6E-11 60.4 10.2 81 172-252 6-104 (116)
276 cd05902 Ig_Neurocan Immunoglob 98.5 2.1E-06 4.6E-11 59.2 9.7 84 179-262 2-106 (110)
277 cd05902 Ig_Neurocan Immunoglob 98.5 2.5E-06 5.4E-11 58.9 9.8 78 79-156 1-107 (110)
278 cd00099 IgV Immunoglobulin var 98.5 9.4E-07 2E-11 61.1 7.6 76 175-252 2-91 (105)
279 cd05888 Ig1_Nectin-4_like Frst 98.5 2.7E-06 5.8E-11 58.1 9.6 74 82-155 2-99 (100)
280 cd05761 Ig2_Necl-1-4_like Seco 98.5 1.4E-06 2.9E-11 57.1 7.8 69 182-253 2-70 (82)
281 cd05888 Ig1_Nectin-4_like Frst 98.4 3.4E-06 7.5E-11 57.5 9.8 83 181-263 2-100 (100)
282 cd05899 IgV_TCR_beta Immunoglo 98.4 1.1E-06 2.4E-11 61.3 7.5 77 171-251 5-95 (110)
283 cd04980 IgV_L_kappa Immunoglob 98.4 1.8E-06 4E-11 59.7 8.5 77 169-250 5-93 (106)
284 cd07694 Ig2_CD4 Second immunog 98.4 3.3E-06 7.2E-11 54.4 8.8 77 174-262 9-85 (88)
285 cd05901 Ig_Versican Immunoglob 98.4 6.7E-06 1.4E-10 56.9 10.9 78 80-157 2-115 (117)
286 cd05711 Ig_FcalphaRI Immunoglo 98.4 2E-06 4.3E-11 57.9 8.2 68 173-249 9-76 (94)
287 cd05767 IgC_MHC_II_alpha Class 98.4 4.9E-06 1.1E-10 55.7 9.9 71 178-251 14-84 (94)
288 PHA03271 envelope glycoprotein 98.4 1.4E-05 3.1E-10 65.9 14.3 193 2-207 166-387 (490)
289 cd05712 Ig_Siglec_N Immunoglob 98.4 2.7E-06 5.9E-11 60.1 9.1 74 70-143 4-102 (119)
290 cd05886 Ig1_Nectin-1_like Firs 98.4 6.3E-06 1.4E-10 55.8 10.4 37 226-262 61-98 (99)
291 PHA02987 Ig domain OX-2-like p 98.4 5.1E-06 1.1E-10 61.5 10.4 84 75-158 25-124 (189)
292 cd05775 Ig_SLAM-CD84_like_N N- 98.4 1.4E-06 3E-11 59.1 7.1 79 178-262 3-96 (97)
293 cd07705 Ig2_Necl-1 Second immu 98.4 5.2E-06 1.1E-10 54.4 9.5 63 83-145 2-70 (83)
294 cd05741 Ig_CEACAM_D1_like Firs 98.4 2.4E-06 5.3E-11 57.4 7.8 67 179-252 1-81 (92)
295 cd05901 Ig_Versican Immunoglob 98.4 1E-05 2.2E-10 56.1 10.7 38 226-263 77-114 (117)
296 cd07705 Ig2_Necl-1 Second immu 98.4 3.8E-06 8.2E-11 55.0 8.2 69 182-252 2-70 (83)
297 cd05761 Ig2_Necl-1-4_like Seco 98.4 4.9E-06 1.1E-10 54.5 8.7 63 83-145 2-69 (82)
298 cd05846 Ig1_MRC-OX-2_like Firs 98.4 3.2E-06 6.8E-11 57.4 8.0 76 80-155 1-96 (97)
299 cd05768 IgC_CH4 CH4 domain (fo 98.4 2.7E-06 5.8E-11 58.0 7.5 76 177-252 14-92 (102)
300 cd05770 IgC_beta2m Class I maj 98.3 1.2E-05 2.7E-10 53.6 10.3 71 177-251 13-83 (93)
301 cd05884 Ig2_Necl-3 Second immu 98.3 4.5E-06 9.8E-11 54.6 7.9 70 182-253 2-71 (83)
302 cd05766 IgC_MHC_II_beta Class 98.3 1.6E-05 3.4E-10 53.4 10.6 74 177-253 12-85 (94)
303 cd05716 Ig_pIgR Immunoglobulin 98.3 4E-06 8.6E-11 57.1 7.8 70 75-144 2-87 (98)
304 cd00098 IgC Immunoglobulin Con 98.3 3.2E-06 7E-11 57.2 7.3 68 78-145 11-86 (95)
305 cd05846 Ig1_MRC-OX-2_like Firs 98.3 7E-06 1.5E-10 55.7 8.7 82 179-262 1-96 (97)
306 PF07686 V-set: Immunoglobulin 98.3 4.5E-06 9.8E-11 58.5 8.0 79 171-250 8-101 (114)
307 cd05886 Ig1_Nectin-1_like Firs 98.3 1.6E-05 3.4E-10 53.9 10.2 74 82-155 2-98 (99)
308 cd05884 Ig2_Necl-3 Second immu 98.3 7.3E-06 1.6E-10 53.6 8.2 63 83-145 2-70 (83)
309 PF07654 C1-set: Immunoglobuli 98.3 7.1E-06 1.5E-10 53.9 8.2 72 178-252 7-78 (83)
310 cd07700 IgV_CD8_beta Immunoglo 98.3 6.2E-06 1.3E-10 57.1 8.1 66 76-141 2-92 (107)
311 cd05769 IgC_TCR_beta T cell re 98.3 1E-05 2.2E-10 56.2 9.0 80 176-255 15-96 (115)
312 cd05772 IgC_SIRP Signal-regula 98.3 2.5E-05 5.4E-10 54.1 10.8 76 175-252 17-93 (111)
313 cd05720 Ig_CD8_alpha Immunoglo 98.3 5.4E-06 1.2E-10 57.0 7.6 66 76-141 2-89 (104)
314 cd04982 IgV_TCR_gamma Immunogl 98.3 4.8E-06 1.1E-10 58.7 7.5 76 172-249 6-98 (116)
315 cd05887 Ig1_Nectin-3_like Firs 98.3 1.1E-05 2.3E-10 54.2 8.6 81 180-262 1-95 (96)
316 PHA03269 envelope glycoprotein 98.3 0.00027 5.8E-09 59.9 18.3 124 121-252 289-418 (566)
317 cd05772 IgC_SIRP Signal-regula 98.2 3.2E-05 7E-10 53.5 10.6 67 77-144 18-92 (111)
318 cd04985 IgC_CH1 CH1 domain (fi 98.2 1.9E-05 4.2E-10 53.0 9.1 73 178-251 15-87 (95)
319 cd07697 IgC_TCR_gamma T cell r 98.2 1.7E-05 3.6E-10 53.2 8.4 73 176-251 13-85 (96)
320 cd04984 IgV_L_lambda Immunoglo 98.2 9.6E-06 2.1E-10 55.2 7.5 71 175-249 2-84 (98)
321 cd07706 IgV_TCR_delta Immunogl 98.2 1.3E-05 2.8E-10 56.5 8.2 79 171-250 6-94 (116)
322 cd05887 Ig1_Nectin-3_like Firs 98.2 2.2E-05 4.8E-10 52.6 8.7 75 81-155 1-95 (96)
323 cd05712 Ig_Siglec_N Immunoglob 98.2 1.7E-05 3.8E-10 56.0 8.7 79 172-250 7-102 (119)
324 cd07698 IgC_MHC_I_alpha3 Class 98.2 3E-05 6.6E-10 52.1 9.5 78 65-145 2-84 (93)
325 cd04981 IgV_H Immunoglobulin ( 98.2 1.3E-05 2.8E-10 56.4 7.9 72 71-142 3-97 (117)
326 PHA03273 envelope glycoprotein 98.2 0.0005 1.1E-08 58.0 17.9 124 121-252 198-326 (486)
327 PF08205 C2-set_2: CD80-like C 98.1 2.9E-05 6.3E-10 51.8 8.8 78 67-145 2-85 (89)
328 cd05716 Ig_pIgR Immunoglobulin 98.1 1.8E-05 3.9E-10 53.8 7.8 76 175-251 3-87 (98)
329 cd07696 IgC_CH3 CH3 domain (th 98.1 1.7E-05 3.6E-10 53.4 7.3 77 175-252 10-87 (96)
330 cd05766 IgC_MHC_II_beta Class 98.1 8.1E-05 1.8E-09 50.0 10.0 69 77-145 11-84 (94)
331 PHA02987 Ig domain OX-2-like p 98.1 2.7E-05 5.8E-10 57.7 8.1 88 173-263 24-122 (189)
332 cd07700 IgV_CD8_beta Immunoglo 98.1 2.4E-05 5.2E-10 54.2 7.5 72 175-249 2-93 (107)
333 PHA03270 envelope glycoprotein 98.1 0.00097 2.1E-08 55.8 17.7 124 122-253 183-310 (466)
334 PF08205 C2-set_2: CD80-like C 98.1 3.2E-05 6.9E-10 51.6 7.8 73 179-254 14-87 (89)
335 cd00096 Ig Immunoglobulin doma 98.1 3.5E-05 7.5E-10 48.4 7.6 62 83-144 1-66 (74)
336 PHA03376 BARF1; Provisional 98.0 1E-05 2.2E-10 59.6 5.4 74 31-104 85-163 (221)
337 cd00096 Ig Immunoglobulin doma 98.0 6.3E-05 1.4E-09 47.1 8.8 66 182-251 1-66 (74)
338 cd05889 Ig1_DNAM-1_like First 98.0 6.1E-05 1.3E-09 50.6 8.6 80 180-261 1-94 (96)
339 cd04986 IgC_CH2 CH2 domain (se 98.0 2.4E-05 5.2E-10 52.5 6.5 74 176-252 16-90 (99)
340 cd07699 IgC_L Immunoglobulin C 98.0 4.6E-05 9.9E-10 51.9 8.0 80 65-144 1-89 (100)
341 PHA03269 envelope glycoprotein 98.0 0.00042 9.1E-09 58.7 14.7 165 32-207 288-471 (566)
342 PHA03271 envelope glycoprotein 98.0 0.0074 1.6E-07 50.5 21.9 125 121-252 207-336 (490)
343 cd05767 IgC_MHC_II_alpha Class 97.9 0.00019 4.1E-09 48.1 9.4 76 65-144 1-84 (94)
344 cd05889 Ig1_DNAM-1_like First 97.9 0.00013 2.8E-09 49.0 8.7 72 81-152 1-92 (96)
345 smart00406 IGv Immunoglobulin 97.9 4.9E-05 1.1E-09 49.5 6.6 59 82-140 1-81 (81)
346 cd04981 IgV_H Immunoglobulin ( 97.9 7.1E-05 1.5E-09 52.6 7.7 79 171-249 4-97 (117)
347 cd05847 IgC_CH2_IgE CH2 domain 97.9 0.00018 4E-09 48.1 9.1 68 79-146 13-88 (94)
348 PHA03273 envelope glycoprotein 97.9 0.00091 2E-08 56.5 14.9 161 33-204 198-376 (486)
349 PHA03270 envelope glycoprotein 97.9 0.001 2.2E-08 55.7 14.5 162 34-208 183-362 (466)
350 cd05770 IgC_beta2m Class I maj 97.8 0.00028 6.1E-09 47.1 9.2 68 77-144 12-83 (93)
351 smart00407 IGc1 Immunoglobulin 97.8 0.00026 5.6E-09 45.4 8.6 62 83-144 2-71 (75)
352 cd05720 Ig_CD8_alpha Immunoglo 97.8 0.00011 2.3E-09 50.5 6.9 70 176-249 3-90 (104)
353 KOG1480|consensus 97.8 1.4E-05 3E-10 71.0 2.5 199 43-266 7-222 (909)
354 cd05769 IgC_TCR_beta T cell re 97.8 0.00031 6.6E-09 48.9 8.6 83 65-147 2-95 (115)
355 cd05768 IgC_CH4 CH4 domain (fo 97.7 0.00014 3E-09 49.6 6.7 69 76-144 12-91 (102)
356 cd05721 IgV_CTLA-4 Immunoglobu 97.6 0.00042 9.1E-09 47.5 7.4 76 172-247 6-93 (115)
357 PHA02633 hypothetical protein; 97.6 0.00027 5.8E-09 41.9 5.4 39 284-322 17-55 (63)
358 smart00406 IGv Immunoglobulin 97.6 0.00023 5.1E-09 46.2 6.0 67 181-247 1-81 (81)
359 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00053 1.2E-08 46.1 7.6 74 71-144 5-86 (96)
360 cd07697 IgC_TCR_gamma T cell r 97.6 0.00065 1.4E-08 45.6 7.8 68 77-144 13-85 (96)
361 cd05721 IgV_CTLA-4 Immunoglobu 97.5 0.0013 2.7E-08 45.2 8.6 71 70-140 3-93 (115)
362 cd05719 Ig2_PVR_like Second im 97.5 0.0012 2.7E-08 44.2 8.5 71 179-255 15-86 (95)
363 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.0019 4.2E-08 43.3 9.4 65 79-144 15-87 (95)
364 PF07654 C1-set: Immunoglobuli 97.5 0.001 2.2E-08 43.5 7.5 65 78-145 6-78 (83)
365 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0014 3E-08 43.9 8.0 75 180-260 16-91 (95)
366 cd05719 Ig2_PVR_like Second im 97.4 0.0021 4.5E-08 43.2 8.8 64 80-146 15-84 (95)
367 cd07692 Ig_CD3_epsilon Immunog 97.4 0.00041 8.9E-09 42.0 4.6 51 78-142 5-55 (65)
368 PHA02633 hypothetical protein; 97.4 0.00081 1.8E-08 39.9 5.3 37 122-158 19-55 (63)
369 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.0011 2.4E-08 40.5 5.9 60 179-264 6-65 (69)
370 cd07689 Ig2_VCAM-1 Second immu 97.3 0.0016 3.5E-08 43.3 7.1 63 77-141 12-83 (99)
371 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.00093 2E-08 40.8 5.3 50 79-142 5-54 (69)
372 cd07703 Ig2_Nectin-2_like Seco 97.3 0.0024 5.3E-08 42.7 7.9 70 81-151 16-89 (95)
373 cd04986 IgC_CH2 CH2 domain (se 97.2 0.0013 2.8E-08 44.2 5.9 78 66-144 4-89 (99)
374 PHA02914 Immunoglobulin-like d 97.1 0.091 2E-06 44.0 16.5 80 173-253 273-371 (500)
375 cd07692 Ig_CD3_epsilon Immunog 97.0 0.0022 4.8E-08 38.9 5.0 51 178-250 6-56 (65)
376 cd07704 Ig2_Nectin-3-4_like Se 96.9 0.0097 2.1E-07 39.8 7.4 69 75-145 11-85 (97)
377 cd07689 Ig2_VCAM-1 Second immu 96.8 0.0088 1.9E-07 39.9 6.9 73 176-252 12-87 (99)
378 cd07704 Ig2_Nectin-3-4_like Se 96.8 0.018 4E-07 38.5 8.3 74 174-252 11-85 (97)
379 KOG0613|consensus 96.7 0.0075 1.6E-07 57.6 8.4 168 77-256 241-421 (1205)
380 PHA02982 hypothetical protein; 96.7 0.026 5.7E-07 42.7 9.4 117 75-205 34-172 (251)
381 PF08204 V-set_CD47: CD47 immu 96.6 0.00095 2.1E-08 46.9 1.4 78 77-155 24-119 (130)
382 KOG1480|consensus 95.9 0.0037 8E-08 56.3 1.5 77 67-146 131-208 (909)
383 PF08204 V-set_CD47: CD47 immu 95.9 0.0089 1.9E-07 42.1 3.1 85 177-262 25-119 (130)
384 PF07354 Sp38: Zona-pellucida- 95.5 0.026 5.7E-07 44.5 4.7 48 93-143 11-59 (271)
385 KOG4597|consensus 95.3 0.029 6.3E-07 47.9 4.5 90 67-156 198-292 (560)
386 PF02124 Marek_A: Marek's dise 95.2 1.1 2.4E-05 34.7 13.2 62 191-252 2-64 (211)
387 PHA03042 CD47-like protein; Pr 95.2 0.13 2.8E-06 40.9 7.4 71 178-261 30-103 (286)
388 KOG0613|consensus 95.1 0.041 8.9E-07 52.9 5.5 227 11-246 249-511 (1205)
389 TIGR00864 PCC polycystin catio 95.1 6 0.00013 42.6 21.6 251 39-322 1833-2127(2740)
390 PHA02865 MHC-like TNF binding 95.1 0.18 3.8E-06 41.9 8.4 23 181-203 216-238 (338)
391 PHA02982 hypothetical protein; 94.9 0.096 2.1E-06 39.8 5.8 76 173-253 33-125 (251)
392 PF07354 Sp38: Zona-pellucida- 94.7 0.052 1.1E-06 42.9 4.3 49 195-251 12-60 (271)
393 PF06328 Lep_receptor_Ig: Ig-l 94.6 0.38 8.3E-06 31.7 7.6 69 70-140 8-81 (89)
394 KOG4597|consensus 94.2 0.12 2.6E-06 44.3 5.6 89 171-265 203-294 (560)
395 PHA02865 MHC-like TNF binding 93.8 0.5 1.1E-05 39.3 8.3 38 61-102 199-238 (338)
396 PHA02914 Immunoglobulin-like d 93.8 3.8 8.2E-05 34.9 13.4 164 74-250 273-466 (500)
397 PHA03042 CD47-like protein; Pr 93.6 0.37 7.9E-06 38.4 6.9 75 238-320 31-105 (286)
398 TIGR00864 PCC polycystin catio 93.3 15 0.00032 40.0 24.3 189 37-263 1661-1864(2740)
399 PF05790 C2-set: Immunoglobuli 93.1 1.3 2.9E-05 28.5 7.9 52 195-262 26-78 (80)
400 PF11465 Receptor_2B4: Natural 92.6 0.46 9.9E-06 32.1 5.2 35 121-155 71-106 (108)
401 KOG1026|consensus 92.2 0.45 9.7E-06 44.2 6.5 202 75-305 202-405 (774)
402 PF11465 Receptor_2B4: Natural 91.6 0.67 1.4E-05 31.3 5.1 42 278-319 64-106 (108)
403 PF03921 ICAM_N: Intercellular 91.2 3.1 6.7E-05 27.5 11.6 84 67-159 5-89 (91)
404 PF05790 C2-set: Immunoglobuli 91.0 2.9 6.3E-05 26.9 7.6 32 123-154 45-77 (80)
405 PF02124 Marek_A: Marek's dise 90.9 6.3 0.00014 30.6 16.1 103 95-207 7-117 (211)
406 PF03921 ICAM_N: Intercellular 88.9 5 0.00011 26.5 9.1 82 168-267 7-90 (91)
407 PF06832 BiPBP_C: Penicillin-B 87.7 6 0.00013 26.0 8.3 73 63-147 8-84 (89)
408 PHA03283 envelope glycoprotein 87.6 15 0.00032 32.8 11.4 82 121-202 134-233 (542)
409 PF06328 Lep_receptor_Ig: Ig-l 87.6 3.8 8.2E-05 27.0 6.4 68 172-247 11-81 (89)
410 PHA03052 Hypothetical protein; 87.1 1.3 2.9E-05 27.0 3.6 35 72-106 4-41 (69)
411 PHA03052 Hypothetical protein; 86.2 4.6 9.9E-05 24.7 5.5 40 172-211 5-45 (69)
412 PHA03189 UL14 tegument protein 85.8 12 0.00026 30.7 9.3 74 71-144 58-156 (348)
413 PF02480 Herpes_gE: Alphaherpe 81.7 5.8 0.00013 35.0 6.7 31 27-57 83-113 (439)
414 PHA03283 envelope glycoprotein 80.4 5.8 0.00013 35.1 6.1 39 283-321 132-170 (542)
415 KOG1026|consensus 80.3 0.59 1.3E-05 43.4 0.3 71 35-107 24-94 (774)
416 PHA03189 UL14 tegument protein 80.2 13 0.00029 30.4 7.6 26 228-254 134-159 (348)
417 PHA03286 envelope glycoprotein 78.0 48 0.001 29.1 16.1 82 121-202 127-225 (492)
418 PHA03282 envelope glycoprotein 74.6 21 0.00046 31.3 7.7 24 283-306 331-354 (540)
419 cd05890 Ig2_Nectin-1_like Seco 74.0 13 0.00028 24.8 5.0 71 181-260 22-96 (98)
420 PHA03112 IL-18 binding protein 72.6 26 0.00055 25.3 6.6 26 78-103 36-63 (141)
421 cd05890 Ig2_Nectin-1_like Seco 72.1 26 0.00056 23.4 6.0 59 83-144 23-87 (98)
422 COG5475 Uncharacterized small 71.8 9.8 0.00021 22.2 3.5 28 286-315 19-46 (60)
423 PF02440 Adeno_E3_CR1: Adenovi 65.8 17 0.00037 22.1 4.0 21 77-101 2-22 (63)
424 PRK14081 triple tyrosine motif 63.7 1.3E+02 0.0029 28.3 16.4 163 37-209 247-431 (667)
425 PHA03112 IL-18 binding protein 63.5 46 0.00099 24.1 6.3 77 177-253 36-121 (141)
426 PF06832 BiPBP_C: Penicillin-B 61.0 44 0.00095 21.8 9.7 56 181-256 31-86 (89)
427 PHA03240 envelope glycoprotein 57.3 13 0.00028 28.7 2.9 28 74-101 32-59 (258)
428 PHA03286 envelope glycoprotein 52.0 48 0.0011 29.1 5.8 39 284-322 126-165 (492)
429 PF01688 Herpes_gI: Alphaherpe 44.6 65 0.0014 24.0 4.9 37 283-319 122-158 (161)
430 PHA03282 envelope glycoprotein 44.0 40 0.00087 29.7 4.2 37 286-322 125-163 (540)
431 PHA03281 envelope glycoprotein 41.7 2.8E+02 0.006 25.4 14.8 82 121-202 298-394 (642)
432 PHA03281 envelope glycoprotein 40.9 55 0.0012 29.5 4.6 38 286-323 299-337 (642)
433 PF11049 KSHV_K1: Glycoprotein 40.8 33 0.00071 21.0 2.3 54 183-262 2-55 (71)
434 PF01688 Herpes_gI: Alphaherpe 40.6 77 0.0017 23.7 4.7 32 228-259 124-155 (161)
435 KOG0200|consensus 36.2 3.7E+02 0.0081 25.3 12.9 115 122-249 14-138 (609)
436 KOG0200|consensus 32.7 88 0.0019 29.3 5.0 106 33-142 13-138 (609)
437 PF02480 Herpes_gE: Alphaherpe 32.5 15 0.00032 32.6 0.0 37 285-321 89-126 (439)
438 PF13220 DUF4028: Protein of u 31.0 42 0.00091 19.3 1.6 19 293-311 6-24 (65)
439 PHA03290 envelope glycoprotein 25.0 2.1E+02 0.0045 24.2 5.2 38 283-320 127-164 (357)
440 PHA03289 envelope glycoprotein 22.8 1.8E+02 0.0038 24.5 4.4 34 286-319 123-156 (352)
441 PHA03289 envelope glycoprotein 22.1 2.8E+02 0.006 23.4 5.4 35 228-262 122-156 (352)
442 PHA03292 envelope glycoprotein 21.5 2.7E+02 0.0059 24.1 5.3 35 228-262 128-162 (413)
443 PF11141 DUF2914: Protein of u 20.7 2.2E+02 0.0047 17.5 8.4 59 196-262 7-65 (66)
444 PHA03290 envelope glycoprotein 20.3 3.2E+02 0.007 23.2 5.4 27 228-254 129-155 (357)
No 1
>KOG3513|consensus
Probab=100.00 E-value=4.1e-40 Score=294.01 Aligned_cols=293 Identities=25% Similarity=0.417 Sum_probs=238.0
Q ss_pred eeeecccCCC-CcccCCCCCCCCCCCCCcccCCCCCCCcccccccccccc-----cccCCCCeeEecCCceEecCCCeEE
Q psy1095 11 LSVKLTRPSG-LMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT-----RRLTSSPRFYAVPHNKICDLGDTVR 84 (325)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~-----~~~~~~p~~~~~~~~~~v~~g~~v~ 84 (325)
.++.|.+.++ .++...+..-..+.|.|.+++-+|+|.|.|.+.|..+.. ..+.++|.++..+.+..+..|+++.
T Consensus 271 P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~ 350 (1051)
T KOG3513|consen 271 PQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVT 350 (1051)
T ss_pred CcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeE
Confidence 4789999999 666666666677899999999999999999999887733 4666999999999999999999999
Q ss_pred EEEEEEecCCCeeEEeeCCeeCCCCCc---EEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcc
Q psy1095 85 FQCSVTGQPAPWTSWSKDGKPATPNAR---VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161 (325)
Q Consensus 85 l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~ 161 (325)
|.|.+.|.|.|.++|++|+.++....+ ..+... +|.|.+++..|+|.|.|.+.|..|...+.+.|.|...
T Consensus 351 ~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~--- 423 (1051)
T KOG3513|consen 351 LECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS--- 423 (1051)
T ss_pred EEEEecCCCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc---
Confidence 999999999999999999999986665 555432 5999999999999999999999999999999999875
Q ss_pred cCCCeeeecCcC--eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095 162 ISRPKVLNGLEN--LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239 (325)
Q Consensus 162 ~~~p~~~~~~~~--~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 239 (325)
+|.|...+.. ..+..|..+.|.|.+.+.|. +.+.|.+++..+..+.++... .+| +|.|.+++.+|
T Consensus 424 --~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~--p~~~W~k~~~~~~~~~r~~i~--edG-------tL~I~n~t~~D 490 (1051)
T KOG3513|consen 424 --APVFPLNPVERKVMAVVGGTVTIDCKPFASPK--PKVSWLKGGEKLLQSGRIRIL--EDG-------TLEISNVTRSD 490 (1051)
T ss_pred --CCCCCCCccceEEEEEeCCeEEEeeccCCCCc--ceEEEEcCCcccccCceEEEC--CCC-------cEEecccCccc
Confidence 3444444433 36778999999999999998 899999998865555554433 454 99999999999
Q ss_pred CeEEEEEEEeCCCcEEeEEEEEEEe--------------------------------------eCCeecCCC---CceEE
Q psy1095 240 EGEFTCRVANELGEVVTSACLIVDV--------------------------------------VKGKDLTSD---GRLNI 278 (325)
Q Consensus 240 ~G~Y~C~~~~~~~~~~~~~~l~v~~--------------------------------------~~~~~~~~~---~~~~~ 278 (325)
+|.|+|.|.|..|.......|.|.. .+|..+... .++..
T Consensus 491 aG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~ 570 (1051)
T KOG3513|consen 491 AGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEI 570 (1051)
T ss_pred CcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEE
Confidence 9999999999999999888877732 222221111 11111
Q ss_pred EEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095 279 ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323 (325)
Q Consensus 279 ~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 323 (325)
....+...|+|.++...|+|.|.|+|...+.+.++.+.|.|+++|
T Consensus 571 ~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpP 615 (1051)
T KOG3513|consen 571 NDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPP 615 (1051)
T ss_pred eCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCC
Confidence 111112469999999999999999999988899999999999887
No 2
>KOG3513|consensus
Probab=100.00 E-value=2e-38 Score=283.22 Aligned_cols=300 Identities=22% Similarity=0.311 Sum_probs=229.1
Q ss_pred chhcccceeeecccCCCCcccC----CCCCCCCCCCCCcccCCCCCCCccccccccccccc---------------ccCC
Q psy1095 4 PEEKENSLSVKLTRPSGLMSGH----STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTR---------------RLTS 64 (325)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~---------------~~~~ 64 (325)
|..-.. |++.|.......-.. .........|-+.+|..+|.+.|.|.+.+....+. ....
T Consensus 161 P~~~P~-l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~ 239 (1051)
T KOG3513|consen 161 PAHFPP-LRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREY 239 (1051)
T ss_pred CCCCCC-ccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccccccccc
Confidence 444444 677777666554222 12233446777999999999999999976332221 1114
Q ss_pred CCeeEe-cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 65 SPRFYA-VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 65 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
+|.+.. .|+......|+.|.|.|.+.|.|.|.+.|.|.+.... ..+.... +...+|.|.+++.+|+|.|.|.+.|.
T Consensus 240 ~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~-~~r~~~~--~~~~vL~I~nv~~~D~G~Y~C~AeN~ 316 (1051)
T KOG3513|consen 240 APKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPP-PRRATYS--NYGKVLKIPNVQYEDAGEYECIAENS 316 (1051)
T ss_pred CCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCC-Ccceeee--ccccEEEecccCcCCCeEEEEEEecc
Confidence 565543 3446678899999999999999999999999877422 2232222 34467999999999999999999999
Q ss_pred CeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCc
Q psy1095 144 YGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223 (325)
Q Consensus 144 ~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 223 (325)
.|.....+.+.|... |..+..+.+..+..|+++.|.|.+.|.|. +.++|++||.++....+........+
T Consensus 317 ~G~~~~~~~v~v~a~------P~w~~~~~d~~~~~gs~v~~eC~a~g~P~--p~v~WlkNg~pl~~~~r~~~~~i~~g-- 386 (1051)
T KOG3513|consen 317 RGSATHSGHVTVYAP------PYWLQKPQDTEADTGSNVTLECKASGKPN--PTVKWLKNGEPLEPAERDPRYKIDDG-- 386 (1051)
T ss_pred cccceeeEEEEEecC------chhhcccceeEecCCCCeEEEEEecCCCC--CceEEeeCCeecCccCCCcceEEeCC--
Confidence 998888999999876 66666777888899999999999999998 89999999999986655333333444
Q ss_pred ceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC------------------------------------
Q psy1095 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG------------------------------------ 267 (325)
Q Consensus 224 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~------------------------------------ 267 (325)
.|+|.+++..|+|.|.|.|+|..|...+++.|.|....+
T Consensus 387 -----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~ 461 (1051)
T KOG3513|consen 387 -----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL 461 (1051)
T ss_pred -----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence 899999999999999999999999999999999843321
Q ss_pred ---eecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccCC
Q psy1095 268 ---KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325 (325)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~i 325 (325)
..+..++++.+ ..+ .+|.|.+++.+|+|.|+|.|+|.+|..+....|.|++++.|
T Consensus 462 k~~~~~~~~~r~~i-~ed--GtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri 519 (1051)
T KOG3513|consen 462 KGGEKLLQSGRIRI-LED--GTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRI 519 (1051)
T ss_pred cCCcccccCceEEE-CCC--CcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceE
Confidence 11112222222 122 36999999999999999999999999999999999998875
No 3
>KOG4221|consensus
Probab=100.00 E-value=1.9e-31 Score=238.26 Aligned_cols=299 Identities=23% Similarity=0.345 Sum_probs=231.4
Q ss_pred ceeeecccCCCCcccCC---CCCCCCCCCCCcccCC-----CCCCCccccccccccc-------ccccCCCCeeEecCCc
Q psy1095 10 SLSVKLTRPSGLMSGHS---TPRSTPRSTPPRSISP-----LSSRTFTPYSLNSAIR-------TRRLTSSPRFYAVPHN 74 (325)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~v~~-----~d~G~Y~c~~~~~~~~-------~~~~~~~p~~~~~~~~ 74 (325)
-.++.|++++..+.-.. .....+.+|-|.++-. -|+|.|.|.+...+.. .+.+...+.|...+.+
T Consensus 70 ~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~ 149 (1381)
T KOG4221|consen 70 SVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPES 149 (1381)
T ss_pred CeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccc
Confidence 45788998888777662 3444567888998888 8999999998655222 2344477888889999
Q ss_pred eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee-EEEEEEE
Q psy1095 75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-VEATARL 153 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l 153 (325)
.++..|+++.|.|.+.+.|.|.+.|.++..++....++.+...+ .|.|.+++..|.|.|.|.+.+.... ....+.|
T Consensus 150 ~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~l 226 (1381)
T KOG4221|consen 150 TTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAEL 226 (1381)
T ss_pred eeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEE
Confidence 99999999999999999888999999999988887777776665 4999999999999999999886543 2445677
Q ss_pred EEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC
Q psy1095 154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233 (325)
Q Consensus 154 ~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 233 (325)
.|...+.......|...+....+..|+++.|.|.+.+.|. +.|.|.+++..+..+. .+..... .+.|.|.
T Consensus 227 tv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~--p~v~Wlrng~~i~~ds-~rivl~g-------~~slliS 296 (1381)
T KOG4221|consen 227 TVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPK--PSVKWLRNGEKISVDS-YRIVLVG-------GSSLLIS 296 (1381)
T ss_pred EecCCcccccceeeecCCCccccccCCcEEEEEEecCCCC--CceEEeeCCeeeeecc-eEEEEec-------ccceEEe
Confidence 7775555555566777777888999999999999999999 8999999999988765 3333222 2589999
Q ss_pred CCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCee------------------------------------cCCCCceE
Q psy1095 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD------------------------------------LTSDGRLN 277 (325)
Q Consensus 234 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~------------------------------------~~~~~~~~ 277 (325)
+++..|+|.|+|+|.|......+.+.|.|...++-. +.+.+.++
T Consensus 297 ~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~k 376 (1381)
T KOG4221|consen 297 NATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFK 376 (1381)
T ss_pred ccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceE
Confidence 999999999999999977777777777775443211 11111111
Q ss_pred EEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095 278 IITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI 324 (325)
Q Consensus 278 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 324 (325)
+. .+ ..|.|..+-..|+|.|.|.++|..|...+.+.|.|...|+
T Consensus 377 i~-~~--~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~ 420 (1381)
T KOG4221|consen 377 IV-GG--GNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA 420 (1381)
T ss_pred ec-CC--CCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc
Confidence 11 11 2288888999999999999999999999999887766554
No 4
>KOG4194|consensus
Probab=99.96 E-value=5e-28 Score=203.04 Aligned_cols=225 Identities=24% Similarity=0.435 Sum_probs=184.7
Q ss_pred CCCCCcccCCCCCCCcccccccccccc------cccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCee-
Q psy1095 33 RSTPPRSISPLSSRTFTPYSLNSAIRT------RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP- 105 (325)
Q Consensus 33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~- 105 (325)
.-|++.||...|+|.|.|++.|..+.. ..+...|.|...|.++++..|+.+.|.|.++|.|.|++.|-|+|..
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd 653 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD 653 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence 345688999999999999998876643 4555899999999999999999999999999999999999998765
Q ss_pred CCCC--CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEE
Q psy1095 106 ATPN--ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183 (325)
Q Consensus 106 ~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 183 (325)
.+.. .+..+..++ ..+.|.+++.+|+|.|+|.+.|.+|..++.+.|.|.+. |.+.....+..|..|+.+.
T Consensus 654 FPAA~eRRl~Vmped--d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~------p~f~~PL~~~~V~~get~v 725 (873)
T KOG4194|consen 654 FPAARERRLHVMPED--DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLET------PSFSIPLEDQLVVVGETLV 725 (873)
T ss_pred CchhhhheeeecCCC--CEEEEecccccccceeEEeeeccccceeeceEEEEecC------CcccccccceEEEecceEE
Confidence 4433 344444433 35899999999999999999999999999999999986 5556667788899999999
Q ss_pred EEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263 (325)
Q Consensus 184 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 263 (325)
|.|.+.+.|.. +.+.|+|+++++....+..+. .. .-.|.+.+...+|+|.|+|...+..+.......+.+.
T Consensus 726 lqC~a~~~~a~-pr~~W~k~d~pil~t~rh~f~--d~------dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 726 LQCLAEGAPAD-PRLEWFKEDKPILITERHTFP--DG------DQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred EEEecCCCCCC-ccccccCCCCceEEeecccCC--CC------CeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence 99999987764 899999999988765543332 22 2478888889999999999999999988888888887
Q ss_pred eeCCeecCCCC
Q psy1095 264 VVKGKDLTSDG 274 (325)
Q Consensus 264 ~~~~~~~~~~~ 274 (325)
..++-.+..++
T Consensus 797 ~~~~~~~Se~~ 807 (873)
T KOG4194|consen 797 QKKKCRMSEDG 807 (873)
T ss_pred ecCCcccccCC
Confidence 77666555444
No 5
>KOG4221|consensus
Probab=99.96 E-value=2.1e-28 Score=219.00 Aligned_cols=295 Identities=21% Similarity=0.329 Sum_probs=212.6
Q ss_pred ccceeeecccCCCCcccC-CCCCCCCCCCCCcccCCCCCCCccccccccccccc------ccC------CCCeeEecCCc
Q psy1095 8 ENSLSVKLTRPSGLMSGH-STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTR------RLT------SSPRFYAVPHN 74 (325)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~------~~~------~~p~~~~~~~~ 74 (325)
+.+..+.|.+++..+..- .....-+..|.|.++++.|.|.|+|.+.++..+.. .+. ..-.|...|.+
T Consensus 167 e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~ 246 (1381)
T KOG4221|consen 167 EPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSN 246 (1381)
T ss_pred ccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCc
Confidence 445578888887743333 33344456888999999999999999977655332 111 12245677888
Q ss_pred eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC-cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095 75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL 153 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 153 (325)
..+.+|+++.|.|.+.+.|.|.|.|.+++..+.-.. ++.+... ..|.|.+++.+|+|.|+|++.|......+...|
T Consensus 247 ~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~---~slliS~a~~~dSg~YtC~Atn~~D~idasaev 323 (1381)
T KOG4221|consen 247 AVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGG---SSLLISNATDDDSGKYTCRATNTNDSIDASAEV 323 (1381)
T ss_pred cccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecc---cceEEeccccccCceEEEEecCCCcccccceEE
Confidence 899999999999999999999999999999886543 3333222 359999999999999999999976677788888
Q ss_pred EEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC
Q psy1095 154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233 (325)
Q Consensus 154 ~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 233 (325)
.|..+ |.|+..+......++.++.|.|.+.+.|. +.+.|+|+|..+..+..++.. ..+ .|.|.
T Consensus 324 ~V~a~------P~~~~~p~~l~A~e~~die~ec~~~g~p~--p~v~w~kNgd~~ipsdy~ki~--~~~-------~lrIl 386 (1381)
T KOG4221|consen 324 TVLAP------PGFTKAPTTLVAHESMDIEFECPVSGKPI--PTVRWYKNGDRIIPSDYFKIV--GGG-------NLRIL 386 (1381)
T ss_pred EEEcC------CCCCCCCcceeeeeccceeEeCCCCCCCc--ceEEEEecCcccCcccceEec--CCC-------CcEEE
Confidence 89876 55555556667778999999999999877 899999999887765554432 232 38888
Q ss_pred CCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC-----------------------------eecCCCCce--------
Q psy1095 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG-----------------------------KDLTSDGRL-------- 276 (325)
Q Consensus 234 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-----------------------------~~~~~~~~~-------- 276 (325)
.+-..|.|.|.|.+.|..|.....+.|.+...+- .+....+..
T Consensus 387 gi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~ 466 (1381)
T KOG4221|consen 387 GIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYK 466 (1381)
T ss_pred EEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEe
Confidence 8888999999999999999888766664311100 000011100
Q ss_pred ---------EEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095 277 ---------NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323 (325)
Q Consensus 277 ---------~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 323 (325)
......+ ..+.+.++...-...+.|.|.|..|....+..|+|.-+|
T Consensus 467 ~~~~~rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~p 521 (1381)
T KOG4221|consen 467 VEGDVRERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQP 521 (1381)
T ss_pred cCCchhhhheeccCCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCC
Confidence 1111122 455666666555555577788999999999999998766
No 6
>KOG4222|consensus
Probab=99.95 E-value=2.5e-27 Score=211.05 Aligned_cols=292 Identities=24% Similarity=0.366 Sum_probs=219.0
Q ss_pred eeecccCCCCcccC---CCCCCCCCCCCCcccCCCCCCCcccccccccccc------cccCCCCeeEecCCceEecCCCe
Q psy1095 12 SVKLTRPSGLMSGH---STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT------RRLTSSPRFYAVPHNKICDLGDT 82 (325)
Q Consensus 12 ~~~~~~~~~~~~~~---~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~------~~~~~~p~~~~~~~~~~v~~g~~ 82 (325)
.++|-+++..+--. ..-.-....|.|.|+..+|+|+|.|++.|..+.. +.+..+|.+...|....+.+|..
T Consensus 163 tvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~ 242 (1281)
T KOG4222|consen 163 TVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAA 242 (1281)
T ss_pred cceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccc
Confidence 56677777666511 1111234678899999999999999998866543 56668999999999999999999
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCccc
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAII 162 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~ 162 (325)
+.+.|.+.|.|.|.+.|.+++..+... ++.+..+ ..+|.|.+++..|.|.|.|.+.|..|..++...++|...
T Consensus 243 ~~f~c~v~GdP~P~Vrwkk~~~~~P~~-ry~i~~d--~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap---- 315 (1281)
T KOG4222|consen 243 AEFDCRVGGDPQPTVRWKKDDPSLPRS-RYSILDD--TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP---- 315 (1281)
T ss_pred cccccccCCCCCCceeeeccCCCCCcc-ceeeeec--cccccccccCCCcccceeeeccccccccccccceEEecC----
Confidence 999999999999999999987777654 4444433 346999999999999999999999999999999999876
Q ss_pred CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccC------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLD------SDMKPEVQVDSKENLVIARLKIPHVY 236 (325)
Q Consensus 163 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~ 236 (325)
|.|...+.+..+..|..++|.|.+.++|+ +.+.|.+.+...... .+.+..... ...|+|.+++
T Consensus 316 --P~f~kkp~dq~v~lg~~vt~pc~~~gnP~--PavfW~keg~q~llf~~~p~~~~~r~svs~-------~g~L~it~v~ 384 (1281)
T KOG4222|consen 316 --PSFGKKPRDQKVALGGTVTFPCETLGNPP--PAVFWLKEGSQDLLFSASPPSSNGRGSVSP-------TGTLTITNVR 384 (1281)
T ss_pred --cccccccCccccccCceEEeeeecCCCCC--cceEEeccCcceecccCCCCCcCccceecC-------CCCccccccc
Confidence 67777777888889999999999999999 899999977543211 121222112 2389999999
Q ss_pred CCCCeEEEEEEEeCCCcEEeEEEEEEEe-----eCCeecC---------CCCce--------------------------
Q psy1095 237 PEDEGEFTCRVANELGEVVTSACLIVDV-----VKGKDLT---------SDGRL-------------------------- 276 (325)
Q Consensus 237 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~-----~~~~~~~---------~~~~~-------------------------- 276 (325)
..|.|.|.|...+..+.......+.+.. .+...+. .++..
T Consensus 385 ~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~ 464 (1281)
T KOG4222|consen 385 QSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNP 464 (1281)
T ss_pred ccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccC
Confidence 9999999999888777655544443321 1222221 00000
Q ss_pred -EEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095 277 -NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321 (325)
Q Consensus 277 -~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 321 (325)
.........+|.|.+...-|.|.|+|.|.+..|+...++.|.|..
T Consensus 465 d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~ 510 (1281)
T KOG4222|consen 465 DSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEK 510 (1281)
T ss_pred CcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhh
Confidence 000111224799999999999999999999999999999999864
No 7
>KOG4194|consensus
Probab=99.94 E-value=1.1e-25 Score=189.14 Aligned_cols=245 Identities=23% Similarity=0.393 Sum_probs=184.2
Q ss_pred CCCeeEecCCceEecCCCeEEEEEEEEe--cCCCeeEEeeCCeeCCCC-----CcEEEEe--------cCCeEEEEEccC
Q psy1095 64 SSPRFYAVPHNKICDLGDTVRFQCSVTG--QPAPWTSWSKDGKPATPN-----ARVTIRE--------KEDLRFLEISEV 128 (325)
Q Consensus 64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~~~~~~~-----~~~~~~~--------~~~~~~l~i~~~ 128 (325)
..|.|...|+.+....|++++|+|.+.+ ..+..+.|.+++.-.... .++.... ..-...|.+.++
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 4678888999988899999999999865 334578999987633211 1111111 011345899999
Q ss_pred CCCCCeEEEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEE-
Q psy1095 129 TLEDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRL- 206 (325)
Q Consensus 129 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~- 206 (325)
+..|+|.|+|.++|.+|.. ...+.++|... |.|+..+.+.++..|+.+.|.|.++|.|. |.+.|.|+|..
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~------PsFtktP~dltl~tg~mArl~CaAtG~P~--PeIawqkdggtd 653 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA------PSFTKTPEDLTLRTGQMARLECAATGHPR--PEIAWQKDGGTD 653 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeecc------CccccCcccceeecccceeeeeeccCCCC--cceeehhcCCCC
Confidence 9999999999999999865 45678888765 88899999999999999999999999998 89999998765
Q ss_pred eccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecC---------------
Q psy1095 207 IKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLT--------------- 271 (325)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~--------------- 271 (325)
.+.....+.....+. -.+.|.++..+|+|.|+|.|.|..|+.+..+.|+|...+...++
T Consensus 654 FPAA~eRRl~Vmped------d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlq 727 (873)
T KOG4194|consen 654 FPAARERRLHVMPED------DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQ 727 (873)
T ss_pred CchhhhheeeecCCC------CEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEE
Confidence 443322222222222 47899999999999999999999999999999999766544333
Q ss_pred -------C---------CCceEE----EEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095 272 -------S---------DGRLNI----ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322 (325)
Q Consensus 272 -------~---------~~~~~~----~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 322 (325)
. ++...+ ...++...|.+.+...+|+|.|+|...|..|.....+.+.|-.+
T Consensus 728 C~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~ 798 (873)
T KOG4194|consen 728 CLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQK 798 (873)
T ss_pred EecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeec
Confidence 1 111111 12345567899999999999999999999998887776665443
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.94 E-value=2.5e-25 Score=184.94 Aligned_cols=236 Identities=21% Similarity=0.303 Sum_probs=155.1
Q ss_pred ceeeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCccccccccccccc-----cc--CCCCeeEecCCceEecCCCe
Q psy1095 10 SLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTR-----RL--TSSPRFYAVPHNKICDLGDT 82 (325)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~-----~~--~~~p~~~~~~~~~~v~~g~~ 82 (325)
...++|.+.+..... .......+.+.|.++..+|+|.|+|.+.|..+... .+ ..+|.+...+.+..+.+|..
T Consensus 60 ~~~i~W~K~g~~~~~-~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~ 138 (326)
T PHA02785 60 ILDILWEKRGADNDR-IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERST 138 (326)
T ss_pred CceEEEEECCCccce-EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCc
Confidence 456788887643221 11111233577999999999999999998764221 12 13344443445556789999
Q ss_pred EEEEEE-----EEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE----EEEEE
Q psy1095 83 VRFQCS-----VTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE----ATARL 153 (325)
Q Consensus 83 v~l~C~-----~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~l 153 (325)
+.|.|. ..+.|.+.++|+++.. + ...++.... ...|.|.+++.+|+|.|+|.+.|..+... ..+.|
T Consensus 139 ~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l 213 (326)
T PHA02785 139 GEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRT---PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKL 213 (326)
T ss_pred EEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecC---CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEE
Confidence 999997 2456888999998643 2 223433321 23699999999999999999998766443 23445
Q ss_pred EEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCC-ceEEEecC------Ccce
Q psy1095 154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDM-KPEVQVDS------KENL 225 (325)
Q Consensus 154 ~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~-~~~~~~~~------~~~~ 225 (325)
.|... ..+|.+ ..+....+..|+.++|.|.+.+.|++ .+.+.|+++|..+...... .......+ ....
T Consensus 214 ~V~~~---~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (326)
T PHA02785 214 EVRDR---IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRV 289 (326)
T ss_pred EEecc---CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccccccee
Confidence 55432 123433 33456677789999999999988752 2589999999987543211 11111111 0112
Q ss_pred eEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095 226 VIARLKIPHVYPEDEGEFTCRVANELGEVV 255 (325)
Q Consensus 226 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 255 (325)
....|.|.+++.+|+|.|+|.|.|..+...
T Consensus 290 ~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 290 ITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred eeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 356899999999999999999999875433
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=2.1e-23 Score=173.49 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=110.1
Q ss_pred ecCCCeEEEEEEE-----EecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095 77 CDLGDTVRFQCSV-----TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151 (325)
Q Consensus 77 v~~g~~v~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 151 (325)
+.+|+.+.|.|.+ .|.|.++++|+|++.... +.... .+ ...|.|.++..+|+|.|+|.+.|..+....++
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~-~~-g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPI-DN-GSNMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEc-cC-CceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 5579999999996 678889999999875321 11111 12 23478999999999999999999988777788
Q ss_pred EEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEE-----EecCCCCCeeEEeeCCEEeccCCCCceEEEecCCccee
Q psy1095 152 RLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV-----QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226 (325)
Q Consensus 152 ~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-----~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (325)
.|.|..... +.+........+.+|..+.|.|.. .+.++ +.+.|+++.. +. ..+ ... . .
T Consensus 113 ~L~V~~~~~----~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~--~~i~W~k~~~-~~-~~r--~~~-~------~ 175 (326)
T PHA02785 113 NLTIVSVSE----SNIDLISYPQIVNERSTGEMVCPNINAFIASNVN--ADIIWSGHRR-LR-NKR--LKQ-R------T 175 (326)
T ss_pred EEEEEecCC----CccceeeccceecccCcEEEECCChhhcccCCCC--ceEEEccCCc-cC-Ccc--eEe-c------C
Confidence 888865421 222112233456789999999972 34555 8999987642 21 111 111 1 1
Q ss_pred EEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095 227 IARLKIPHVYPEDEGEFTCRVANELGEVV 255 (325)
Q Consensus 227 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 255 (325)
.+.|.|.+++.+|.|.|+|.+.|..+...
T Consensus 176 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~ 204 (326)
T PHA02785 176 PGIITIEDVRKNDAGYYTCVLKYIYGDKT 204 (326)
T ss_pred CCeEEEeecChhhCeEEEEEEEeccCCEE
Confidence 24899999999999999999999877643
No 10
>KOG4222|consensus
Probab=99.92 E-value=4e-24 Score=190.89 Aligned_cols=257 Identities=25% Similarity=0.385 Sum_probs=194.1
Q ss_pred CCCCcccccccccccccccCC-------CCeeEecCCceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCC--CCCcEE
Q psy1095 44 SSRTFTPYSLNSAIRTRRLTS-------SPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPAT--PNARVT 113 (325)
Q Consensus 44 d~G~Y~c~~~~~~~~~~~~~~-------~p~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~--~~~~~~ 113 (325)
|.|.|+|.+.+..+..+.... +-.|-+.|..+.+..|+.+.|.|.- .+.|.|.+.|.|+|+++. ......
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~ 182 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA 182 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence 999999999988776655443 2344456667778899999999985 568899999999999887 333333
Q ss_pred EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE-EEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecC
Q psy1095 114 IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP 192 (325)
Q Consensus 114 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~ 192 (325)
+...+ .|.|.+++..|+|.|.|.+.|..|..+ ....|.|.++ |.|...+....+..|..+.+.|.+.|.|
T Consensus 183 lisgG---~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~------P~f~~rp~~~~v~~g~~~~f~c~v~GdP 253 (1281)
T KOG4222|consen 183 LISGG---NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEK------PWFWKRPKDLAVLVGAAAEFDCRVGGDP 253 (1281)
T ss_pred EecCC---cEEEeccccCCCceeeeeecccccccccccceeeeccC------CccccccccceeecccccccccccCCCC
Confidence 33333 499999999999999999999888553 4567888775 7777777888899999999999999998
Q ss_pred CCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecC-
Q psy1095 193 PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLT- 271 (325)
Q Consensus 193 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~- 271 (325)
. +.++|.+++..+........ .+ ..+|.|.+++..|.|.|.|.+.|..|.....+.++|...++-...
T Consensus 254 ~--P~Vrwkk~~~~~P~~ry~i~---~d------~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp 322 (1281)
T KOG4222|consen 254 Q--PTVRWKKDDPSLPRSRYSIL---DD------TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKP 322 (1281)
T ss_pred C--CceeeeccCCCCCccceeee---ec------cccccccccCCCcccceeeeccccccccccccceEEecCccccccc
Confidence 8 89999998777765433221 22 247999999999999999999999999999998888654432111
Q ss_pred ----------------------------CCCceEEEE------------eCCEEEEEEcCCCCCCCeEEEEEEECCCeeE
Q psy1095 272 ----------------------------SDGRLNIIT------------VGGTSVLTIEDITGDDSGKYQVHVSNQHGSD 311 (325)
Q Consensus 272 ----------------------------~~~~~~~~~------------~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 311 (325)
..+...+.+ .....+|.|.++...|.|.|.|...+..|..
T Consensus 323 ~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss 402 (1281)
T KOG4222|consen 323 RDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSS 402 (1281)
T ss_pred CccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccccc
Confidence 000000000 0112379999999999999999999988877
Q ss_pred EeEEEEEEe
Q psy1095 312 SCYASVAVE 320 (325)
Q Consensus 312 ~~~~~l~V~ 320 (325)
.....+.+.
T Consensus 403 ~~~a~~~qt 411 (1281)
T KOG4222|consen 403 LTKAYLEQT 411 (1281)
T ss_pred ccceeEEEE
Confidence 766555554
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.87 E-value=1.6e-20 Score=146.78 Aligned_cols=160 Identities=20% Similarity=0.305 Sum_probs=113.4
Q ss_pred CceEecCCCeEEEEEEEEecC-----------CCeeEEeeCCeeC--C-CCCc---E--E-EEecCCeEEEEEccCCCCC
Q psy1095 73 HNKICDLGDTVRFQCSVTGQP-----------APWTSWSKDGKPA--T-PNAR---V--T-IREKEDLRFLEISEVTLED 132 (325)
Q Consensus 73 ~~~~v~~g~~v~l~C~~~~~p-----------~~~v~W~~~~~~~--~-~~~~---~--~-~~~~~~~~~l~i~~~~~~d 132 (325)
.+..+.+|++|.|.|.+.+.| .+.+.|+|++... . ...+ . . .........|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 345688999999999986643 4589999987542 1 1111 0 0 0001123479999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCC---CCCeeEEeeCCEEecc
Q psy1095 133 AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPP---NDHDISWFRNNRLIKL 209 (325)
Q Consensus 133 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~---~~~~~~W~~~~~~~~~ 209 (325)
+|.|+|.+.|..+.....+.|.|... + ....+.+|+.+.|.|.+.+.++ +.+++.|+|++..+..
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~------~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~ 177 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSG------T------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY 177 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecC------C------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC
Confidence 99999999998887777788877432 1 1335678999999999864321 1289999999999875
Q ss_pred CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
..+... ...+ ..|.|.+++.+|+|.|+|.|.....
T Consensus 178 ~~r~~~--~~~~------~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 178 TDRIQL--RNNN------STLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred CCCEEE--eCCC------CEEEECcCCHHhCEEEEEEEEEeEC
Confidence 543221 1222 4799999999999999999988643
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.78 E-value=8e-18 Score=114.49 Aligned_cols=94 Identities=30% Similarity=0.479 Sum_probs=86.3
Q ss_pred CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
|.|...|....+..|+.+.|.|.+.|.|.+.+.|+|++..+....++.+........|.|.++..+|+|.|+|.+.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 67888899999999999999999999999999999999999877777777766678899999999999999999999999
Q ss_pred eEEEEEEEEEECCC
Q psy1095 146 SVEATARLEIMDPR 159 (325)
Q Consensus 146 ~~~~~~~l~v~~~~ 159 (325)
...+.+.|.|.+.|
T Consensus 81 ~~~~~~~l~V~~~P 94 (98)
T cd05762 81 SRQAQVNLTVVDKP 94 (98)
T ss_pred ceeEEEEEEEecCC
Confidence 99999999998874
No 13
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.72 E-value=2e-16 Score=106.89 Aligned_cols=90 Identities=33% Similarity=0.566 Sum_probs=79.9
Q ss_pred CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
.||.|...|....+.+|+.+.|.|.+.+.|.|.+.|++++..+....++.+........|.|.+++.+|+|.|+|.+.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 47888899999999999999999999999999999999999988777777766666678999999999999999999999
Q ss_pred CeeEEEEEEE
Q psy1095 144 YGSVEATARL 153 (325)
Q Consensus 144 ~~~~~~~~~l 153 (325)
.|.....+.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9987776654
No 14
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=1.9e-16 Score=107.72 Aligned_cols=97 Identities=24% Similarity=0.344 Sum_probs=80.1
Q ss_pred CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244 (325)
Q Consensus 165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 244 (325)
|.|...+....+..|+.+.|.|.+.|.|+ +.+.|+|++..+..+.+.... ... ..+.|.|.++..+|+|.|+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~--p~v~W~kdg~~l~~~~~~~~~--~~~----~~s~L~I~~~~~~D~G~Yt 72 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQP--ITCTWMKFRKQIQEGEGIKIE--NTE----NSSKLTITEGQQEHCGCYT 72 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCC--CceEEEECCEEecCCCcEEEE--ecC----CeeEEEECCCChhhCEEEE
Confidence 34566667788999999999999999998 899999999998755543322 222 2478999999999999999
Q ss_pred EEEEeCCCcEEeEEEEEEEeeCCee
Q psy1095 245 CRVANELGEVVTSACLIVDVVKGKD 269 (325)
Q Consensus 245 C~~~~~~~~~~~~~~l~v~~~~~~~ 269 (325)
|.|.|..|.....+.|.|...++++
T Consensus 73 c~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 73 LEVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EEEEcCCCceeEEEEEEEecCCCCC
Confidence 9999999999999999997776543
No 15
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.72 E-value=1.2e-16 Score=106.63 Aligned_cols=87 Identities=24% Similarity=0.390 Sum_probs=75.2
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....++.. . ...|.|.+++.+|+|.|+|.+.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~--~--~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM--S--GAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec--C--CCEEEECcCChhhCEEEEEEEEcCC
Confidence 68899999999999999999999999999999999999988765443322 2 2369999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy1095 145 GSVEATARLEI 155 (325)
Q Consensus 145 ~~~~~~~~l~v 155 (325)
|.....+.|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 98888887776
No 16
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.71 E-value=4.7e-16 Score=104.98 Aligned_cols=90 Identities=34% Similarity=0.618 Sum_probs=83.4
Q ss_pred CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++..+|+|.|+|.+.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 67888899999999999999999999999999999999999888888888878889999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy1095 146 SVEATARLEI 155 (325)
Q Consensus 146 ~~~~~~~l~v 155 (325)
.....+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 8888887765
No 17
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.68 E-value=1.8e-15 Score=102.15 Aligned_cols=85 Identities=27% Similarity=0.492 Sum_probs=72.0
Q ss_pred cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095 71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEA 149 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 149 (325)
.|....+.+|+++.|.|.+.|.|.|.+.|+|++.++....++.+... +....|.|.+++.+|+|.|+|.+.|..|....
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 45566789999999999999999999999999999987777766544 34567999999999999999999999998777
Q ss_pred EEEEEE
Q psy1095 150 TARLEI 155 (325)
Q Consensus 150 ~~~l~v 155 (325)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 766653
No 18
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.67 E-value=2.5e-15 Score=99.62 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=70.8
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095 74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR 152 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 152 (325)
.+.+.+|+.+.|.|.+.|.|.|.+.|++++.++... .++.+........|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 356889999999999999999999999999998754 4666666566678999999999999999999999998887777
Q ss_pred EEE
Q psy1095 153 LEI 155 (325)
Q Consensus 153 l~v 155 (325)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 654
No 19
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.67 E-value=1.9e-16 Score=123.97 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCCCCCcccCCCCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEEEEEEEE-----ecCCCeeEEeeCCeeC
Q psy1095 32 PRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVT-----GQPAPWTSWSKDGKPA 106 (325)
Q Consensus 32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-----~~p~~~v~W~~~~~~~ 106 (325)
..+|.|.+++.+|+|.|+|.+.+..... .......+...+.+..+.+|+++.|.|.+. +.|.|.++|+|++.++
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l 175 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV 175 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC
Confidence 4588999999999999999998865431 111111222223345678899999999975 2457899999999999
Q ss_pred CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 107 TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
....++.+... ..+|.|.+++.+|+|.|+|.+...
T Consensus 176 ~~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 176 LYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred CCCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEe
Confidence 87666665432 347999999999999999999764
No 20
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.66 E-value=4.4e-15 Score=101.08 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=69.2
Q ss_pred ceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecC-----CeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095 74 NKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKE-----DLRFLEISEVTLEDAGLYTIKVENNYGSV 147 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 147 (325)
...+.+|+++.|.|.+.| .|.|.+.|+|+|.++...........+ ....|.|.++..+|+|.|+|.+.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 566889999999999999 899999999999999755443333221 24679999999999999999999999988
Q ss_pred EEEEEEEEE
Q psy1095 148 EATARLEIM 156 (325)
Q Consensus 148 ~~~~~l~v~ 156 (325)
...+.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888775
No 21
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.65 E-value=3.9e-15 Score=99.71 Aligned_cols=87 Identities=23% Similarity=0.426 Sum_probs=73.1
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
||.+...|....+.+|+++.|.|.+.|.|.|.++|++++..+....... .....|.|.+++.+|+|.|+|.+.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECC
Confidence 5677788888889999999999999999999999999887665443332 123479999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy1095 145 GSVEATARLEI 155 (325)
Q Consensus 145 ~~~~~~~~l~v 155 (325)
|.......|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd04968 77 GKDTHQGRIYV 87 (88)
T ss_pred CcEEEEEEEEE
Confidence 98888887776
No 22
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.65 E-value=7e-15 Score=98.83 Aligned_cols=87 Identities=22% Similarity=0.368 Sum_probs=71.5
Q ss_pred EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE
Q psy1095 69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE 148 (325)
Q Consensus 69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 148 (325)
+..|....+.+|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|+|.+.|..|...
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 44566667999999999999999999999999999988655443333334456899999999999999999999999888
Q ss_pred EEEEEEE
Q psy1095 149 ATARLEI 155 (325)
Q Consensus 149 ~~~~l~v 155 (325)
+.+.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 8777653
No 23
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.64 E-value=8.6e-15 Score=99.86 Aligned_cols=91 Identities=20% Similarity=0.464 Sum_probs=73.3
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-----CcEEEEecCCeEEEEEccCCCCCCeEEEEE
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-----ARVTIREKEDLRFLEISEVTLEDAGLYTIK 139 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 139 (325)
.|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+... .++.+........|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 577777777766767899999999999999999999998776432 233333334456799999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy1095 140 VENNYGSVEATARLEI 155 (325)
Q Consensus 140 ~~~~~~~~~~~~~l~v 155 (325)
+.|..|.....+.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999998888887764
No 24
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.64 E-value=6.9e-15 Score=100.11 Aligned_cols=91 Identities=31% Similarity=0.529 Sum_probs=73.4
Q ss_pred CCeeEecCC--ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095 65 SPRFYAVPH--NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVE 141 (325)
Q Consensus 65 ~p~~~~~~~--~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 141 (325)
||.|...+. ...+..|+++.|.|.+.|.|.|.+.|++++..+... .++... .....|.|.+++.+|+|.|+|.+.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~ 78 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAE 78 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEE
Confidence 455555443 446889999999999999999999999999988655 333332 233569999999999999999999
Q ss_pred eCCeeEEEEEEEEEEC
Q psy1095 142 NNYGSVEATARLEIMD 157 (325)
Q Consensus 142 ~~~~~~~~~~~l~v~~ 157 (325)
|..|.....+.|.|..
T Consensus 79 N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 79 NKAGEQEAEIHLKVFA 94 (95)
T ss_pred cCCCeEEEEEEEEEEe
Confidence 9999988888888764
No 25
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.63 E-value=3.1e-15 Score=99.77 Aligned_cols=86 Identities=26% Similarity=0.380 Sum_probs=71.3
Q ss_pred CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244 (325)
Q Consensus 165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 244 (325)
|.+...+.+..+.+|+.+.|.|.+.|.|. +.+.|++++..+..... . ...+ ..|.|.+++.+|+|.|+
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~--P~v~W~k~~~~~~~~~~--~--~~~~------~~L~I~~v~~~D~G~Y~ 69 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNPV--PVIRWRKILEPMPATAE--I--SMSG------AVLKIFNIQPEDEGTYE 69 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccCC--CEEEEEECCcCCCCCCE--E--ecCC------CEEEECcCChhhCEEEE
Confidence 56677777888999999999999999998 89999999876653321 1 1222 47999999999999999
Q ss_pred EEEEeCCCcEEeEEEEEE
Q psy1095 245 CRVANELGEVVTSACLIV 262 (325)
Q Consensus 245 C~~~~~~~~~~~~~~l~v 262 (325)
|.|.|..|.....+.|.|
T Consensus 70 C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 70 CEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEEEcCCCceEEEEEEEE
Confidence 999999999988888876
No 26
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.63 E-value=1.4e-14 Score=96.86 Aligned_cols=87 Identities=26% Similarity=0.459 Sum_probs=72.5
Q ss_pred eEecCCceEecCCCeEEEEEEEEecCCCeeEEee-CCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095 68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS 146 (325)
Q Consensus 68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 146 (325)
+.+.|.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.+...+....|.|.++..+|+|.|+|.+.|..|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 456778888999999999999999998 899998 477777667777766666678999999999999999999999886
Q ss_pred E-EEEEEEEE
Q psy1095 147 V-EATARLEI 155 (325)
Q Consensus 147 ~-~~~~~l~v 155 (325)
. .+++.|.+
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 4 55666654
No 27
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.63 E-value=5.4e-15 Score=98.13 Aligned_cols=84 Identities=30% Similarity=0.666 Sum_probs=71.6
Q ss_pred eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095 68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV 147 (325)
Q Consensus 68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 147 (325)
+...|.+..+.+|+++.|.|.+.|.|.|.+.|++++..+....++.... ..|.|.+++.+|+|.|+|.+.|..|..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA----GDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeC----CEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 4556778889999999999999999999999999999987666555432 259999999999999999999999988
Q ss_pred EEEEEEEE
Q psy1095 148 EATARLEI 155 (325)
Q Consensus 148 ~~~~~l~v 155 (325)
.+.+.|.|
T Consensus 78 ~~~~~l~V 85 (85)
T cd05728 78 YASAELAV 85 (85)
T ss_pred EEEEEEEC
Confidence 88777654
No 28
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.63 E-value=3.6e-15 Score=96.26 Aligned_cols=74 Identities=34% Similarity=0.562 Sum_probs=63.1
Q ss_pred CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
+|+++.|.|.+.|.|.|.++|+|++..+....+..+... .+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 689999999999999999999999998876555544322 36999999999999999999999998888777654
No 29
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.62 E-value=7.8e-15 Score=94.14 Aligned_cols=73 Identities=26% Similarity=0.526 Sum_probs=61.3
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEecC-CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKE-DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
|.|.|.+.|.|.|.+.|+|++..+.. ..++.+...+ +..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999999864 3566655433 3457999999999999999999999998888877764
No 30
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.62 E-value=4.9e-15 Score=94.79 Aligned_cols=73 Identities=36% Similarity=0.530 Sum_probs=63.5
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
|+++.|.|.+.|.|.|.+.|+|++..+....++.+... .+|.|.+++.+|.|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 68899999999999999999999998877777766443 36999999999999999999999998888877764
No 31
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.62 E-value=1.7e-14 Score=97.46 Aligned_cols=88 Identities=30% Similarity=0.513 Sum_probs=70.2
Q ss_pred eEecCCceEecCCCeEEEEEEEEecCC-CeeEEee-CCeeCCC-CCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 68 FYAVPHNKICDLGDTVRFQCSVTGQPA-PWTSWSK-DGKPATP-NARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
+.+.|....+..|+++.|.|.+.|.|. |.++|++ ++..+.. ..++.+.. .+...+|.|.+++.+|+|.|+|.+.|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 456677778999999999999999985 7999998 7766654 33444433 233568999999999999999999998
Q ss_pred C-eeEEEEEEEEE
Q psy1095 144 Y-GSVEATARLEI 155 (325)
Q Consensus 144 ~-~~~~~~~~l~v 155 (325)
. +...+++.|.|
T Consensus 83 ~~g~~~~s~~l~v 95 (96)
T cd05865 83 DEGESEATVNVKI 95 (96)
T ss_pred CCCcEEEEEEEEE
Confidence 6 78888887776
No 32
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.62 E-value=1.6e-14 Score=98.33 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=68.3
Q ss_pred CeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 173 NLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
...+.+|+.+.|.|.+.| .|+ +.+.|+|+|..+......... ..........+.|.|..+..+|+|.|+|.|.|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~--p~v~W~Kdg~~i~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPP--PHINWTYDNRTLTNKLTEIVT-SENESEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCC--CccEEEeCCeeCCCCcceeEE-EeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 457889999999999999 666 899999999988744322111 1110111245789999999999999999999999
Q ss_pred CcEEeEEEEEEE
Q psy1095 252 GEVVTSACLIVD 263 (325)
Q Consensus 252 ~~~~~~~~l~v~ 263 (325)
|.....+.|.|.
T Consensus 89 G~~~~t~~L~V~ 100 (101)
T cd04975 89 ASKSLTFELYVN 100 (101)
T ss_pred ccEEEEEEEEEE
Confidence 999988888874
No 33
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=1.4e-14 Score=99.07 Aligned_cols=90 Identities=21% Similarity=0.471 Sum_probs=70.8
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC--CeeCCC-----CCcEEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD--GKPATP-----NARVTIREKEDLRFLEISEVTLEDAGLYT 137 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 137 (325)
+|.+.. +.+..+.+|++++|.|.+.|.|.|.+.|+++ +..+.. ..++.+.......+|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 566654 6778899999999999999999999999994 333321 23555544444568999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEE
Q psy1095 138 IKVENNYGSVEATARLEI 155 (325)
Q Consensus 138 C~~~~~~~~~~~~~~l~v 155 (325)
|.+.|..|.....+.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999998777777653
No 34
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.61 E-value=2.1e-14 Score=92.80 Aligned_cols=74 Identities=34% Similarity=0.613 Sum_probs=65.3
Q ss_pred eEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 82 TVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 82 ~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
.+.|.|.+.|.|.|.+.|+|++..+....++.+........|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999999999999999999997777777776666788999999999999999999999998888777654
No 35
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.61 E-value=2.4e-14 Score=97.63 Aligned_cols=83 Identities=24% Similarity=0.332 Sum_probs=68.1
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec------CCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095 74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK------EDLRFLEISEVTLEDAGLYTIKVENNYGSV 147 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 147 (325)
...+..|+.+.|.|.+.|+|.|.+.|+|++.++....+...... ....+|.|.+++.+|+|.|+|.+.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 45678899999999999999999999999999876554332211 123579999999999999999999999988
Q ss_pred EEEEEEEEE
Q psy1095 148 EATARLEIM 156 (325)
Q Consensus 148 ~~~~~l~v~ 156 (325)
..++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888887764
No 36
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.61 E-value=2e-14 Score=98.10 Aligned_cols=90 Identities=22% Similarity=0.465 Sum_probs=71.9
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-----CcEEEEecCCeEEEEEccCCCCCCeEEEEE
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-----ARVTIREKEDLRFLEISEVTLEDAGLYTIK 139 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 139 (325)
+|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 56775 455677899999999999999999999999998666432 234443334456899999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy1095 140 VENNYGSVEATARLEI 155 (325)
Q Consensus 140 ~~~~~~~~~~~~~l~v 155 (325)
+.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999998877777654
No 37
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.61 E-value=2.3e-14 Score=96.78 Aligned_cols=89 Identities=24% Similarity=0.429 Sum_probs=72.3
Q ss_pred CCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243 (325)
Q Consensus 164 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 243 (325)
+|.+...+....+..|+.+.|.|.+.+.|. +.+.|++++..+....+.... ..+ ..+.|.|.++..+|+|.|
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~--p~v~W~k~g~~l~~~~~~~~~--~~~----~~~~L~i~~~~~~D~G~Y 74 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPA--PTVTWMREGQIIVSSQRHQIT--STE----YKSTFEISKVQMSDEGNY 74 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCC--CEEEEEECCEECCCCCcEEEE--EcC----CeeEEEECCCCcccCEeE
Confidence 466666777888999999999999999998 899999999887654443322 222 246899999999999999
Q ss_pred EEEEEeCCCcEEeEEEE
Q psy1095 244 TCRVANELGEVVTSACL 260 (325)
Q Consensus 244 ~C~~~~~~~~~~~~~~l 260 (325)
.|.|.|..|.....+.|
T Consensus 75 ~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 75 TVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEEcCCCCEeEEEEe
Confidence 99999999988877665
No 38
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.60 E-value=2.2e-14 Score=96.80 Aligned_cols=90 Identities=32% Similarity=0.573 Sum_probs=76.4
Q ss_pred CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244 (325)
Q Consensus 165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 244 (325)
|.|...+....+.+|+.+.|.|.+.+.|. +.+.|++++..+..+.+.... ..+ ..+.|.|.++..+|+|.|+
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~--~~v~W~~~~~~l~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~Y~ 72 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPP--PTVTWYKNGRPLTSSQRYQIE--SDG----GSSSLTIKNVTREDAGTYT 72 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSS--SEEEEEETTEEEESSSSEEEE--EET----TEEEEEESSESGGGSEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCC--Ccccccccccceeeeeeeeee--ccc----ceeEEccCCCChhhCEEEE
Confidence 45666677888999999999999999987 899999999999886665544 322 4589999999999999999
Q ss_pred EEEEeCCCcEEeEEEEEE
Q psy1095 245 CRVANELGEVVTSACLIV 262 (325)
Q Consensus 245 C~~~~~~~~~~~~~~l~v 262 (325)
|.+.|..|.....+.|.|
T Consensus 73 C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 73 CVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEECCCEEEEEEEEEC
Confidence 999999999988888765
No 39
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.60 E-value=3.4e-14 Score=95.63 Aligned_cols=85 Identities=27% Similarity=0.493 Sum_probs=70.4
Q ss_pred cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095 71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEA 149 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 149 (325)
.|....+.+|+++.|.|.+.+.|.|.+.|++++..+....++..... +...+|.|.+++.+|+|.|+|.+.|..|....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 35567789999999999999999999999999998877666554433 23457999999999999999999999998877
Q ss_pred EEEEEE
Q psy1095 150 TARLEI 155 (325)
Q Consensus 150 ~~~l~v 155 (325)
.+.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 776653
No 40
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.60 E-value=3.3e-14 Score=95.96 Aligned_cols=84 Identities=24% Similarity=0.459 Sum_probs=67.5
Q ss_pred cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
....+.+|+.+.|.|.+.|.|. +.+.|++++..+....+...... .+ ....|.|.+++.+|+|.|+|.|.|..
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~--p~v~W~k~g~~l~~~~~~~~~~~-~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPD--PEVSWLKNDQALALSDHYNVKVE-QG----KYASLTIKGVSSEDSGKYGIVVKNKY 81 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCC--CeEEEEECCEECccCCCEEEEEc-CC----CEEEEEEccCChhhCEEEEEEEEECC
Confidence 3457889999999999999988 89999999998876554333211 11 23579999999999999999999999
Q ss_pred CcEEeEEEEEE
Q psy1095 252 GEVVTSACLIV 262 (325)
Q Consensus 252 ~~~~~~~~l~v 262 (325)
|.....+.|.|
T Consensus 82 G~~~~~~~v~v 92 (92)
T cd05737 82 GGETVDVTVSV 92 (92)
T ss_pred CcceEEEEEeC
Confidence 99888877754
No 41
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.60 E-value=2.8e-14 Score=91.14 Aligned_cols=71 Identities=35% Similarity=0.643 Sum_probs=60.9
Q ss_pred eEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 82 TVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 82 ~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
++.|.|.+.|.|.|.++|+|++..+....++.+...+ .|.|.+++.+|+|.|+|.+.|..|...+.+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999988777676665443 3888899999999999999999999888877764
No 42
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.59 E-value=6.8e-14 Score=102.21 Aligned_cols=125 Identities=20% Similarity=0.285 Sum_probs=87.6
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEe
Q psy1095 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF 201 (325)
Q Consensus 122 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~ 201 (325)
+|.|.+++..|+|.|.|.+.+..+.....+.|.|..+ |.+...+.......|+.+.|.|.+.++++..+.+.|+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~------P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~ 75 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP------PRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT 75 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC------CceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence 5899999999999999999987777788888888765 4444444444444788999999999976643689999
Q ss_pred eCCEEecc-----CCC-CceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 202 RNNRLIKL-----DSD-MKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 202 ~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
+++..... ... ........+..+...+.|.+..-..++.+.|+|.+.+...
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 98754221 111 0011112223444567888877666677799999987643
No 43
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.59 E-value=5.5e-14 Score=93.19 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=66.5
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
...+..|+.+.|.|.+.|.|+ |.+.|++++..+..... +....... ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~--P~v~W~k~~~~i~~~~~-r~~~~~~~----~~~~L~I~~~~~~D~G~Y~c~a~N~~G 76 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPA--PTVTWSRGDKAFTETEG-RVRVESYK----DLSSFVIEGAEREDEGVYTITVTNPVG 76 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCC--CeEEEEECCEECccCCC-eEEEEEcC----CeEEEEECCCccCcCEEEEEEEEeCCC
Confidence 356788999999999999999 89999999998865421 11211222 246899999999999999999999999
Q ss_pred cEEeEEEEEE
Q psy1095 253 EVVTSACLIV 262 (325)
Q Consensus 253 ~~~~~~~l~v 262 (325)
....++.|.|
T Consensus 77 ~~~~~~~l~V 86 (86)
T cd05894 77 EDHASLFVKV 86 (86)
T ss_pred cEEEEEEEEC
Confidence 9988887764
No 44
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.59 E-value=2.4e-14 Score=91.91 Aligned_cols=75 Identities=33% Similarity=0.541 Sum_probs=59.2
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|. |.+.|+|++..+..... +.....++. ....|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 v~l~C~v~G~P~--P~i~W~k~~~~i~~~~~-r~~~~~~~~---g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPP--PKIFWKRNNEMVQYNTD-RISLYQDNS---GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEecCC--CeEEEEECCEECcCCCC-eEEEEEcCC---CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 479999999999 89999999998874322 222112210 224799999999999999999999999999998886
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
|
T Consensus 75 V 75 (75)
T cd05892 75 V 75 (75)
T ss_pred C
Confidence 5
No 45
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.59 E-value=2.9e-14 Score=91.67 Aligned_cols=73 Identities=40% Similarity=0.673 Sum_probs=60.7
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecC-CeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKE-DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
|.|.|.+.|.|.|.++|+|++..+... .++.+...+ +...|.|.++..+|+|.|+|.+.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999988653 455554443 3346999999999999999999999999888877764
No 46
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.58 E-value=4.8e-14 Score=97.17 Aligned_cols=91 Identities=29% Similarity=0.572 Sum_probs=69.0
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-----CcEEEEecCCeEEEEEc--cCCCCCCeEEE
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-----ARVTIREKEDLRFLEIS--EVTLEDAGLYT 137 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~--~~~~~d~G~Y~ 137 (325)
||.|...|....+.+|+++.|.|.+.|.|.|.+.|+|++..+... .+......+....+.+. .++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 688999999999999999999999999999999999999988651 12222223333333333 34689999999
Q ss_pred EEEEeCCee-EEEEEEEEE
Q psy1095 138 IKVENNYGS-VEATARLEI 155 (325)
Q Consensus 138 C~~~~~~~~-~~~~~~l~v 155 (325)
|.+.|..|. ....+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999987 455666655
No 47
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.58 E-value=1.2e-14 Score=93.73 Aligned_cols=74 Identities=28% Similarity=0.512 Sum_probs=61.6
Q ss_pred cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 257 (325)
+|+.+.|.|.+.|.|. |.+.|++++..+........ ... ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 1 eG~~v~l~C~~~g~P~--p~i~W~k~g~~~~~~~~~~~--~~~-------~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 69 (74)
T cd05745 1 EGQTVDFLCEAQGYPQ--PVIAWTKGGSQLSVDRRHLV--LSS-------GTLRISRVALHDQGQYECQAVNIVGSQRTV 69 (74)
T ss_pred CCCeEEEEeECCEecC--CEEEEEECCEECCCCCCeEE--ccC-------CeEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence 5889999999999998 89999999988765433211 122 489999999999999999999999999988
Q ss_pred EEEEE
Q psy1095 258 ACLIV 262 (325)
Q Consensus 258 ~~l~v 262 (325)
+.|.|
T Consensus 70 ~~L~V 74 (74)
T cd05745 70 AQLTV 74 (74)
T ss_pred EEEeC
Confidence 88764
No 48
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.58 E-value=1.7e-14 Score=92.25 Aligned_cols=73 Identities=29% Similarity=0.511 Sum_probs=60.7
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
|+.+.|.|.+.|.|. +.+.|+|++..+..+.++.. ..+ ..|.|.+++.+|+|.|.|.|.|..|....++
T Consensus 1 G~~~~l~C~~~g~P~--p~v~W~k~~~~l~~~~r~~~--~~~-------g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 69 (73)
T cd05852 1 GGRVIIECKPKAAPK--PKFSWSKGTELLVNNSRISI--WDD-------GSLEILNITKLDEGSYTCFAENNRGKANSTG 69 (73)
T ss_pred CCeEEEEEecceeCC--CEEEEEeCCEecccCCCEEE--cCC-------CEEEECcCChhHCEEEEEEEECCCCceeEEE
Confidence 678999999999988 89999999987754443222 122 3799999999999999999999999999988
Q ss_pred EEEE
Q psy1095 259 CLIV 262 (325)
Q Consensus 259 ~l~v 262 (325)
.|.|
T Consensus 70 ~l~~ 73 (73)
T cd05852 70 VLSV 73 (73)
T ss_pred EEEC
Confidence 8864
No 49
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.58 E-value=3.2e-14 Score=97.04 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=68.4
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
...+..|+.+.|.|.+.|+|+ |.+.|+|++.++..+..........-......+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~--P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPP--PQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCC--CceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 346778999999999999998 899999999998754432111000000112346899999999999999999999999
Q ss_pred cEEeEEEEEEE
Q psy1095 253 EVVTSACLIVD 263 (325)
Q Consensus 253 ~~~~~~~l~v~ 263 (325)
....++.|.|.
T Consensus 90 ~~~~t~~l~V~ 100 (101)
T cd05859 90 VKSYTFALQIQ 100 (101)
T ss_pred eEEEEEEEEEE
Confidence 99988888874
No 50
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.58 E-value=5.8e-14 Score=91.56 Aligned_cols=73 Identities=33% Similarity=0.516 Sum_probs=63.0
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR 152 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 152 (325)
|+++.|.|.+.|.|.|.++|++++..+....++.+...++...|.|.++..+|+|.|+|.+.|..|.......
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 7899999999999999999999998887777777666666678999999999999999999999887654433
No 51
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.57 E-value=2.8e-14 Score=88.96 Aligned_cols=66 Identities=32% Similarity=0.493 Sum_probs=55.8
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 156 (325)
+.|.|.+.|.|.|.++|+|+|.++... .....|.|.++..+|+|.|+|.+.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999988632 223479999999999999999999999977777766653
No 52
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.57 E-value=9.9e-14 Score=92.47 Aligned_cols=85 Identities=25% Similarity=0.374 Sum_probs=66.0
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
|+.++|.|.+.|.|+ +.+.|++++..+..... +.............+.|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 1 g~~~~l~C~~~g~p~--~~i~W~k~~~~i~~~~~-r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 77 (88)
T cd05735 1 GQKKEMSCTAHGEKP--IIVRWEKEDRIINPEMS-RYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGII 77 (88)
T ss_pred CCeEEEEEEEECCCC--CEEEEeeCCEECCCCCC-cEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEE
Confidence 788999999999987 89999999987754321 222111111122457899999999999999999999999999999
Q ss_pred EEEEEeeC
Q psy1095 259 CLIVDVVK 266 (325)
Q Consensus 259 ~l~v~~~~ 266 (325)
.|.|...+
T Consensus 78 ~L~V~~~P 85 (88)
T cd05735 78 QLTVQEPP 85 (88)
T ss_pred EEEEeCCC
Confidence 99996554
No 53
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.57 E-value=8e-14 Score=90.42 Aligned_cols=75 Identities=24% Similarity=0.467 Sum_probs=61.0
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
|+.+.|.|.+.|.|. |.+.|++++..+............. ..|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus 1 G~~v~l~C~~~G~P~--p~i~W~k~g~~i~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 1 GETARLDCQVEGIPT--PNITWSINGAPIEGTDPDPRRHVSS-------GALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred CCeEEEEEEeeEeCC--CeEEEEECCEECCCCCCCceEEeeC-------CEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 678999999999998 8999999998876543221111112 4799999999999999999999999999888
Q ss_pred EEEE
Q psy1095 259 CLIV 262 (325)
Q Consensus 259 ~l~v 262 (325)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 8876
No 54
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.57 E-value=4.7e-14 Score=91.32 Aligned_cols=75 Identities=23% Similarity=0.444 Sum_probs=61.2
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE-EEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 156 (325)
|+.+.|.|.+.|.|.|.++|++++.++...... .....+ ..|.|.+++..|+|.|+|.+.|..|...+++.|.|+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 688999999999999999999999988543211 111222 368999999999999999999999999988888773
No 55
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.56 E-value=1.1e-13 Score=94.15 Aligned_cols=83 Identities=28% Similarity=0.380 Sum_probs=67.0
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
...+..|+.+.|.|.+.|.|. +.+.|++++..+.... ........ .+.|.|.+++.+|.|.|+|.|.|..|
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~--p~v~W~k~g~~~~~~~-~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 12 NATANLGQSVTLACDADGFPE--PTMTWTKDGEPIESGE-EKYSFNED------GSEMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCC--CEEEEEECCEECcCCC-CEEEEeCC------CCEEEECCCChhhCEEEEEEEEcCCC
Confidence 346789999999999999998 8999999998876541 11211122 24799999999999999999999999
Q ss_pred cEEeEEEEEEEe
Q psy1095 253 EVVTSACLIVDV 264 (325)
Q Consensus 253 ~~~~~~~l~v~~ 264 (325)
.....+.|.|..
T Consensus 83 ~~~~~~~L~V~~ 94 (95)
T cd05730 83 EQEAEIHLKVFA 94 (95)
T ss_pred eEEEEEEEEEEe
Confidence 999999888853
No 56
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.56 E-value=8.1e-14 Score=89.88 Aligned_cols=73 Identities=33% Similarity=0.550 Sum_probs=60.4
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
+.|.|.+.|.|.|.+.|+|++..+.. ..++.+... .+..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999999999999999998874 345555433 34457999999999999999999999998888777654
No 57
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.56 E-value=9.5e-14 Score=92.45 Aligned_cols=81 Identities=32% Similarity=0.584 Sum_probs=65.8
Q ss_pred eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEE-EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095 75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL 153 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 153 (325)
..+.+|+.+.|.|.+.|.|.|.+.|+|++..+....+.. ........+|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 347789999999999999999999999999987654321 1122334579999999999999999999999988887776
Q ss_pred EE
Q psy1095 154 EI 155 (325)
Q Consensus 154 ~v 155 (325)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 54
No 58
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=9e-14 Score=90.20 Aligned_cols=74 Identities=27% Similarity=0.508 Sum_probs=60.6
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcE-EEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
|+++.|.|.+.|.|.|.++|++++.++...... ..... ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999988654211 11111 236999999999999999999999998888888776
No 59
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.56 E-value=1.5e-13 Score=91.52 Aligned_cols=80 Identities=23% Similarity=0.492 Sum_probs=66.9
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEe--c--CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIRE--K--EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~--~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
|+.+.|.|.+.|.|.+.++|++++..+... .++.+.. . .....|.|.++...|+|.|+|.+.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999888543 3554432 1 1235799999999999999999999999999999999
Q ss_pred EECCC
Q psy1095 155 IMDPR 159 (325)
Q Consensus 155 v~~~~ 159 (325)
|...|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 98764
No 60
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=5.6e-14 Score=90.45 Aligned_cols=73 Identities=36% Similarity=0.536 Sum_probs=63.1
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
|+.+.|.|.+.|.|.|.++|++++..+....++.+... ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 68899999999999999999999999877666665433 35999999999999999999999998888777654
No 61
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.55 E-value=6.9e-14 Score=89.90 Aligned_cols=75 Identities=32% Similarity=0.425 Sum_probs=58.6
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|. |.+.|+|++..+..... +......+ .....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~v~G~P~--P~v~W~k~~~~l~~~~~-~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPH--PQIFWKKENESLTHNTD-RVSMHQDN---CGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeEecC--CEEEEEECCEECCCCCC-eEEEEEcC---CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 479999999999 89999999998864322 22211121 0224699999999999999999999999999988886
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
|
T Consensus 75 V 75 (75)
T cd05893 75 V 75 (75)
T ss_pred C
Confidence 4
No 62
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.55 E-value=1.2e-13 Score=92.84 Aligned_cols=83 Identities=18% Similarity=0.336 Sum_probs=65.8
Q ss_pred cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
....+..|+.+.|.|.+.|.|. +.+.|++++..+......... ... ....|.|.++..+|.|.|.|.|.|..
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~--p~v~W~~~g~~~~~~~~~~~~--~~~----~~~~L~I~~v~~~D~g~Y~C~A~N~~ 79 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPL--PKVEWIIAGLIVIQTRTDTLE--TTV----DIYNLQLSNITSETQTTVTCTAENPV 79 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCC--CeEEEEECCEEccCCccEEEE--ecC----CEEEEEEecCCcccCEEEEEEEECCC
Confidence 3455889999999999999998 899999999887543321111 111 24689999999999999999999999
Q ss_pred CcEEeEEEEEE
Q psy1095 252 GEVVTSACLIV 262 (325)
Q Consensus 252 ~~~~~~~~l~v 262 (325)
|.....+.|.|
T Consensus 80 G~~~~~~~L~v 90 (90)
T cd04972 80 GQANVSVQVTV 90 (90)
T ss_pred CceeEEEEEeC
Confidence 99888887754
No 63
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.55 E-value=1.2e-13 Score=89.46 Aligned_cols=75 Identities=24% Similarity=0.454 Sum_probs=61.4
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
|+.+.|.|.+.|.|. |.+.|++++.++......... ..++ ..|.|.+++.+|+|.|.|.|.|..|....++
T Consensus 1 g~~~~l~C~a~G~P~--P~i~W~k~g~~i~~~~~~~~~-~~~~------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd05868 1 GEDGTLICRANGNPK--PSISWLTNGVPIEIAPTDPSR-KVDG------DTIIFSKVQERSSAVYQCNASNEYGYLLANA 71 (76)
T ss_pred CCCEEEEEEeeEeCC--CeEEEEECCEEccccCCCceE-EecC------CEEEECCCCHhhCEEEEEEEEcCCCEEEEEE
Confidence 678999999999998 899999999988643322111 1222 3789999999999999999999999999999
Q ss_pred EEEE
Q psy1095 259 CLIV 262 (325)
Q Consensus 259 ~l~v 262 (325)
.|.|
T Consensus 72 ~l~v 75 (76)
T cd05868 72 FVNV 75 (76)
T ss_pred EEEe
Confidence 8876
No 64
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.55 E-value=5.4e-14 Score=93.31 Aligned_cols=81 Identities=23% Similarity=0.477 Sum_probs=66.8
Q ss_pred cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249 (325)
Q Consensus 170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 249 (325)
.+....+..|+.+.|.|.+.|.|. +.+.|++++..+....+.. ..+ ..|.|.++..+|+|.|+|.|.|
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~--p~v~W~k~g~~~~~~~~~~----~~~------~~L~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPR--PAYRWLKNGQPLASENRIE----VEA------GDLRITKLSLSDSGMYQCVAEN 72 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCC--CEEEEEECCEECCCCCeEE----EeC------CEEEEeeCCHHHCEEEEEEEEC
Confidence 345677889999999999999998 8999999999876543321 112 3799999999999999999999
Q ss_pred CCCcEEeEEEEEE
Q psy1095 250 ELGEVVTSACLIV 262 (325)
Q Consensus 250 ~~~~~~~~~~l~v 262 (325)
..|....++.|.|
T Consensus 73 ~~G~~~~~~~l~V 85 (85)
T cd05728 73 KHGTIYASAELAV 85 (85)
T ss_pred CCCeEEEEEEEEC
Confidence 9999888887764
No 65
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.54 E-value=2e-13 Score=91.39 Aligned_cols=84 Identities=25% Similarity=0.402 Sum_probs=67.5
Q ss_pred eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095 167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246 (325)
Q Consensus 167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 246 (325)
+...+....+.+|+.+.|.|.+.|.|. +.+.|++++..+....... . ....|.|.+++.+|+|.|.|.
T Consensus 4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~--p~v~W~k~~~~~~~~~~~~----~------~~~~L~i~~v~~~D~G~Y~C~ 71 (88)
T cd04968 4 IVVFPKDTYALKGQNVTLECFALGNPV--PQIKWRKVDGSMPSSAEIS----M------SGAVLKIPNIQFEDEGTYECE 71 (88)
T ss_pred EEECCCceEEeCCCcEEEEEEeeEeCC--CEEEEEECCCcCCCccEEE----E------eCCEEEECCCCcccCEEEEEE
Confidence 344455677889999999999999998 8999999887654332211 1 225899999999999999999
Q ss_pred EEeCCCcEEeEEEEEE
Q psy1095 247 VANELGEVVTSACLIV 262 (325)
Q Consensus 247 ~~~~~~~~~~~~~l~v 262 (325)
|.|..|.....+.|.|
T Consensus 72 a~N~~G~~~~~~~l~V 87 (88)
T cd04968 72 AENIKGKDTHQGRIYV 87 (88)
T ss_pred EEECCCcEEEEEEEEE
Confidence 9999999988888876
No 66
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.54 E-value=1.5e-13 Score=92.77 Aligned_cols=87 Identities=26% Similarity=0.381 Sum_probs=64.0
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 249 (325)
+....+..|+.+.|.|.+.|.|.+ +.+.|++ ++..+..... +....... ...+.|.|.+++.+|+|.|+|.|.|
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~-p~i~W~~~~g~~l~~~~~-r~~v~~~~---~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKD-KDISWFSPNGEKLTPNQQ-RISVVRND---DYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCC-CEEEEECCCCcCccccCC-eEEEEeCC---CCceEEEEeccChhhCEEEEEEEEc
Confidence 345568889999999999999852 6999998 6655543221 11111111 0246899999999999999999999
Q ss_pred CC-CcEEeEEEEEE
Q psy1095 250 EL-GEVVTSACLIV 262 (325)
Q Consensus 250 ~~-~~~~~~~~l~v 262 (325)
.. |....++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 96 88888888776
No 67
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.54 E-value=2.5e-13 Score=91.72 Aligned_cols=81 Identities=25% Similarity=0.431 Sum_probs=63.2
Q ss_pred CeeEecCCceEec---CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCC-CCCCeEEEEEEE
Q psy1095 66 PRFYAVPHNKICD---LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVT-LEDAGLYTIKVE 141 (325)
Q Consensus 66 p~~~~~~~~~~v~---~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~ 141 (325)
|.|+..|.++.+. +|+.+.|.|.+.|.|.|.++|+|++..+...........+ ..|.|.++. ..|+|.|+|.+.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEE
Confidence 6777888876654 4789999999999999999999999988654333222222 358888874 699999999999
Q ss_pred eCCeeEE
Q psy1095 142 NNYGSVE 148 (325)
Q Consensus 142 ~~~~~~~ 148 (325)
|..|...
T Consensus 80 N~~G~~~ 86 (94)
T cd05848 80 NSIGSIL 86 (94)
T ss_pred cCCCeEE
Confidence 9998653
No 68
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.54 E-value=3.1e-13 Score=92.17 Aligned_cols=92 Identities=22% Similarity=0.341 Sum_probs=67.1
Q ss_pred CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC---ceEEEecCCcceeEEEEEeCCCCCCCCe
Q psy1095 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM---KPEVQVDSKENLVIARLKIPHVYPEDEG 241 (325)
Q Consensus 165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G 241 (325)
|.+...+....+..|+.+.|.|.+.|.|. |.+.|++++..+...... ....... ...+.|.|.+++.+|+|
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~--P~v~W~~~~~~~~~~~~~~~~~~~v~~~----~~~~~L~I~~v~~~D~G 76 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGDPI--PSITWRTSTRNISSEEKTLDGHIVVRSH----ARVSSLTLKYIQYTDAG 76 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEeCC--CEEEEEECCccccCCccccCccEEEEcC----ccEEEEEEecCccCcCE
Confidence 44444444444556899999999999988 899999988766432211 1111111 13468999999999999
Q ss_pred EEEEEEEeCCCcEEeEEEEEE
Q psy1095 242 EFTCRVANELGEVVTSACLIV 262 (325)
Q Consensus 242 ~Y~C~~~~~~~~~~~~~~l~v 262 (325)
.|+|.|.|..|....++.|.|
T Consensus 77 ~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 77 EYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEEecCCCCeeEEEEEEC
Confidence 999999999999988887764
No 69
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.54 E-value=2e-13 Score=90.26 Aligned_cols=78 Identities=27% Similarity=0.397 Sum_probs=62.8
Q ss_pred CeEEEEEEEEecCCC--eeEEeeCCeeCCCC---CcEEE-EecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 81 DTVRFQCSVTGQPAP--WTSWSKDGKPATPN---ARVTI-REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 81 ~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
+++.|.|.+.|.|.| .++|++++.++... .++.. .......+|.|.+++..|+|.|+|.+.|..|...+.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999877 57999999887542 23322 2222346799999999999999999999999999999999
Q ss_pred EECC
Q psy1095 155 IMDP 158 (325)
Q Consensus 155 v~~~ 158 (325)
|..+
T Consensus 81 V~~~ 84 (85)
T cd05854 81 VRGP 84 (85)
T ss_pred EECC
Confidence 8764
No 70
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.54 E-value=1.1e-13 Score=90.10 Aligned_cols=75 Identities=28% Similarity=0.453 Sum_probs=61.8
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
|+++.|.|.+.|.|.|.+.|++++..+....... ........|.|.+++.+|+|.|+|.+.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999999999999999999886544321 11122356999999999999999999999998888888776
No 71
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.53 E-value=1.1e-13 Score=86.33 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=55.4
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|+ |.+.|+|+|..+.... ....|.|.++..+|+|.|+|.|+|..|....+..+.
T Consensus 1 ~~l~c~v~g~P~--P~v~W~kdg~~l~~~~--------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 64 (67)
T cd05863 1 VKLPVKVAAYPP--PEFQWYKDGKLISGKH--------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE 64 (67)
T ss_pred CEEEEEEEEeCC--CEEEEEECCEECcccC--------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence 479999999999 8999999999885221 124899999999999999999999999887777776
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
+
T Consensus 65 l 65 (67)
T cd05863 65 L 65 (67)
T ss_pred E
Confidence 6
No 72
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.53 E-value=1.5e-13 Score=87.81 Aligned_cols=71 Identities=30% Similarity=0.563 Sum_probs=58.0
Q ss_pred cEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL 260 (325)
Q Consensus 181 ~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 260 (325)
++.|.|.+.|.|. |.+.|++++..+........ ...+ .|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 1 ~v~l~C~~~G~P~--p~v~W~k~g~~~~~~~~~~~--~~~~-------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 1 DVIFECEVTGKPT--PTVKWVKNGDMVIPSDYFKI--VKEH-------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred CEEEEEEEEEeCC--CEEEEEECCeECCCCCCEEE--EecC-------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 4789999999998 89999999988765443322 1222 58888999999999999999999999988887
Q ss_pred EE
Q psy1095 261 IV 262 (325)
Q Consensus 261 ~v 262 (325)
.|
T Consensus 70 ~V 71 (71)
T cd05723 70 II 71 (71)
T ss_pred EC
Confidence 64
No 73
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.53 E-value=4e-13 Score=93.34 Aligned_cols=95 Identities=21% Similarity=0.304 Sum_probs=72.1
Q ss_pred CCCeeEecCCceEe----cCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEe--c--CCeEEEEEccCC-CCCC
Q psy1095 64 SSPRFYAVPHNKIC----DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIRE--K--EDLRFLEISEVT-LEDA 133 (325)
Q Consensus 64 ~~p~~~~~~~~~~v----~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~--~--~~~~~l~i~~~~-~~d~ 133 (325)
.+|.|...|....+ ..|..+.|.|.+.|.|.+.++|++++..+... .++.... . .....|.|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 46777666553222 25678999999999999999999999988643 3443221 1 113579999997 5999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095 134 GLYTIKVENNYGSVEATARLEIMDP 158 (325)
Q Consensus 134 G~Y~C~~~~~~~~~~~~~~l~v~~~ 158 (325)
|.|+|.+.|..|.....+.|.+...
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~ 107 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSR 107 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCC
Confidence 9999999999999988899888765
No 74
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.52 E-value=3e-13 Score=91.01 Aligned_cols=84 Identities=24% Similarity=0.474 Sum_probs=66.9
Q ss_pred cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
....+.+|+.+.|.|.+.+.|. +.+.|++++..+.....+..... .+ ....|.|.+++.+|+|.|+|.|.|..
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~--p~i~W~k~~~~~~~~~~~~~~~~-~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~ 81 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPD--PEVIWFKNDQDIELSEHYSVKLE-QG----KYASLTIKGVTSEDSGKYSINVKNKY 81 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCC--CeEEEEECCEECCCCCCEEEEEc-CC----CEEEEEECCCChhhCEEEEEEEEeCC
Confidence 3567889999999999999887 88999999988765544332211 11 12579999999999999999999999
Q ss_pred CcEEeEEEEEE
Q psy1095 252 GEVVTSACLIV 262 (325)
Q Consensus 252 ~~~~~~~~l~v 262 (325)
|.....+.|.|
T Consensus 82 G~~~~~~~v~~ 92 (92)
T cd05891 82 GGETVDVTVSV 92 (92)
T ss_pred CceeeEEEEEC
Confidence 99988877764
No 75
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.52 E-value=1.4e-13 Score=89.93 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=63.5
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151 (325)
Q Consensus 72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 151 (325)
|.+..+.+|+.+.|.|.+.+. .+.+.|+|+|.++....++.+.. ..|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~----~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG----EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC----CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 456678899999999999885 56899999999998766665532 2699999999999999999999887765555
Q ss_pred EEE
Q psy1095 152 RLE 154 (325)
Q Consensus 152 ~l~ 154 (325)
.|.
T Consensus 76 ~v~ 78 (79)
T cd04973 76 SVN 78 (79)
T ss_pred EEe
Confidence 444
No 76
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.52 E-value=2.6e-13 Score=87.49 Aligned_cols=75 Identities=33% Similarity=0.514 Sum_probs=58.2
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|. |.+.|++++..+..... +......+ .....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 v~L~C~v~G~P~--P~v~W~k~~~~i~~~~~-r~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPP--PQIFWKKNNEMLTYNTD-RISLYQDN---CGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CEEEEEEeecCC--CeEEEEECCEECCCCCC-cEEEEEcC---CCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 479999999998 89999999998864322 11111111 0234799999999999999999999999999888876
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
|
T Consensus 75 v 75 (75)
T cd05744 75 V 75 (75)
T ss_pred C
Confidence 4
No 77
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.52 E-value=2.9e-13 Score=90.66 Aligned_cols=86 Identities=24% Similarity=0.421 Sum_probs=66.8
Q ss_pred CeeE--ecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 66 PRFY--AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 66 p~~~--~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
|.|. ..+.++.+.+|++++|.|.+.|. .|.+.|++++..+... +..+. ....+|.|.+++.+|+|.|.|.+.|.
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~ 77 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNE 77 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcC
Confidence 5553 33456789999999999999999 9999999999887643 34333 23347999999999999999999999
Q ss_pred CeeE-EEEEEEEE
Q psy1095 144 YGSV-EATARLEI 155 (325)
Q Consensus 144 ~~~~-~~~~~l~v 155 (325)
.|.. ...+.|.|
T Consensus 78 ~G~~~S~~~~L~V 90 (91)
T cd05740 78 VSNMTSDPYILNV 90 (91)
T ss_pred CCCEEeeeEEEEe
Confidence 9864 34555554
No 78
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.52 E-value=2.4e-13 Score=87.78 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=60.0
Q ss_pred cEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL 260 (325)
Q Consensus 181 ~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 260 (325)
.+.|.|.+.|.|. |.+.|++++..+..+.+.... ... ..+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 1 ~~~l~c~~~G~P~--p~v~W~k~g~~l~~~~~~~~~--~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 1 SVRLEVPISGRPT--PTVTWSKDGKPLKLSGRVQIE--TTA----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred CEEEEeeEeeeCC--CeEEEEECCEEcCCCCeEEEE--ECC----CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence 3789999999999 899999999988554433222 222 34789999999999999999999999998888777
Q ss_pred EE
Q psy1095 261 IV 262 (325)
Q Consensus 261 ~v 262 (325)
.|
T Consensus 73 ~V 74 (74)
T cd05748 73 KV 74 (74)
T ss_pred EC
Confidence 64
No 79
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.51 E-value=2.2e-13 Score=86.82 Aligned_cols=70 Identities=31% Similarity=0.494 Sum_probs=58.2
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 156 (325)
+.|.|.+.|.|.|.+.|+|++.++....++. .....|.|.+++.+|+|.|+|.+.|..|.....+.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999999999999999987664432 223579999999999999999999999887777766653
No 80
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.51 E-value=3e-13 Score=87.97 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=61.5
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
|+.+.|.|.+.|.|. +.+.|++++..+......... ... ...|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 G~~~~l~C~~~g~P~--p~i~W~~~g~~~~~~~~~~~~-~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd04978 1 GETGRLDCEAEGIPQ--PTITWRLNGVPIEELPPDPRR-RVD------GGTLILSNVQPNDTAVYQCNASNVHGYLLANA 71 (76)
T ss_pred CCeEEEEEEceeeCC--CEEEEEECCEECCCCCCcceE-Ecc------CCEEEECCCChhhCEEEEEEEEccCCeEEEeE
Confidence 678999999999998 899999999888654432111 111 25899999999999999999999999999888
Q ss_pred EEEE
Q psy1095 259 CLIV 262 (325)
Q Consensus 259 ~l~v 262 (325)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd04978 72 FVHV 75 (76)
T ss_pred EEEE
Confidence 8876
No 81
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=2e-13 Score=87.87 Aligned_cols=73 Identities=32% Similarity=0.535 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
|+.+.|.|.+.+.|. +.+.|++++..+....+... ... ..|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 G~~v~L~C~~~g~P~--p~v~W~k~~~~~~~~~~~~~--~~~-------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 69 (73)
T cd04969 1 GGDVIIECKPKAAPK--PTISWSKGTELLTNSSRICI--WPD-------GSLEILNVTKSDEGKYTCFAENFFGKANSTG 69 (73)
T ss_pred CCeEEEEEeeeEcCC--CEEEEEECCEEcccCCCEEE--CCC-------CeEEEccCChhHCEEEEEEEECCCCceEEEE
Confidence 678999999999988 89999999988765443321 122 3799999999999999999999999999888
Q ss_pred EEEE
Q psy1095 259 CLIV 262 (325)
Q Consensus 259 ~l~v 262 (325)
.|.|
T Consensus 70 ~l~V 73 (73)
T cd04969 70 SLSV 73 (73)
T ss_pred EEEC
Confidence 8764
No 82
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.50 E-value=3.9e-13 Score=89.45 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=64.5
Q ss_pred eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095 174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253 (325)
Q Consensus 174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 253 (325)
..+.+|+.+.|.|.+.|.|. +.+.|++++..+.......... ... ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~--p~i~W~k~g~~l~~~~~~~~~~-~~~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPT--PTMRWLKNGKEFKQEHRIGGYK-VRN----QHWSLIMESVVPSDKGNYTCVVENEYGS 76 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCC--CEEEEEECCEECCCCCceeeeE-EeC----CceEEEEccCCcccCEEEEEEEEeCCCE
Confidence 34678999999999999887 8999999999886544321111 111 2357999999999999999999999999
Q ss_pred EEeEEEEEE
Q psy1095 254 VVTSACLIV 262 (325)
Q Consensus 254 ~~~~~~l~v 262 (325)
....+.|.|
T Consensus 77 ~~~~~~l~v 85 (85)
T cd05857 77 INHTYHLDV 85 (85)
T ss_pred EEEEEEEEC
Confidence 988887764
No 83
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.50 E-value=1.4e-13 Score=87.42 Aligned_cols=68 Identities=31% Similarity=0.600 Sum_probs=58.0
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL 153 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 153 (325)
|.|.|.+.|.|.|.++|+|++..+....++.+... ..|.|.+++.+|+|.|+|.+.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999999999999999998877666655432 369999999999999999999999987776655
No 84
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.50 E-value=7.3e-13 Score=87.59 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=62.3
Q ss_pred CcEEEEEEEEecCCCCCeeEEeeCCEEeccCC-CCce-EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDS-DMKP-EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257 (325)
Q Consensus 180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 257 (325)
+.+.|.|.+.|.|.+.+.+.|++++..+.... .... ...... ..+.|.|.+++..|+|.|+|.|.|..|....+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKE----TIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecc----eEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 46899999999998545799999998875432 1111 111111 23689999999999999999999999999999
Q ss_pred EEEEEEe
Q psy1095 258 ACLIVDV 264 (325)
Q Consensus 258 ~~l~v~~ 264 (325)
+.|.|..
T Consensus 77 ~~L~V~~ 83 (85)
T cd05854 77 ATLVVRG 83 (85)
T ss_pred EEEEEEC
Confidence 9998853
No 85
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.50 E-value=1.1e-12 Score=88.60 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=62.3
Q ss_pred CeeEecCCceEecCC---CeEEEEEEEEecCCCeeEEeeCCeeCCCCC--cEEEEecCCeEEEEEccCC-CCCCeEEEEE
Q psy1095 66 PRFYAVPHNKICDLG---DTVRFQCSVTGQPAPWTSWSKDGKPATPNA--RVTIREKEDLRFLEISEVT-LEDAGLYTIK 139 (325)
Q Consensus 66 p~~~~~~~~~~v~~g---~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~ 139 (325)
|.|...|....+.+| +++.|.|.+.|.|.|.++|++++..+.... ++.+. + ..|.|.++. ..|+|.|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~--g~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--A--GNLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--C--CeEEEccCCccCcCEEEEEE
Confidence 677788888877665 589999999999999999999999886432 33332 2 358888765 5999999999
Q ss_pred EEeCCeeEE
Q psy1095 140 VENNYGSVE 148 (325)
Q Consensus 140 ~~~~~~~~~ 148 (325)
+.|..|...
T Consensus 78 A~N~~G~~~ 86 (94)
T cd05850 78 AINRCGTVV 86 (94)
T ss_pred EEcCcCcEE
Confidence 999998654
No 86
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.49 E-value=2.2e-13 Score=86.08 Aligned_cols=68 Identities=29% Similarity=0.407 Sum_probs=55.4
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
+.|.|.+.|.|.|.++|+|++.++....++. ....|.|.++..+|+|.|+|.+.|..|..+....+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc-----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 4689999999999999999999987643321 1246999999999999999999999987666555554
No 87
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.49 E-value=4.8e-13 Score=87.31 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=57.1
Q ss_pred EEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEe-------cCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 84 RFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE-------KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 84 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
.|.|.+.|.|.|.++|+|+|.++.......... ......|.|.+++..|+|.|+|.+.|..|.....+.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 378999999999999999999997665433221 12245799999999999999999999999887776654
No 88
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.49 E-value=7.9e-13 Score=88.96 Aligned_cols=86 Identities=27% Similarity=0.479 Sum_probs=66.1
Q ss_pred eEecCCceEecCCCeEEEEEEEEecCCCeeEEee-CCeeCCCCCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
+.+.|....+..|+++.|.|.+.|.|. .+.|++ ++..+....+..... .....+|+|.+++.+|+|.|+|.+.|..|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 456777888999999999999999874 899997 566555444444333 33456899999999999999999999854
Q ss_pred -eEEEEEEEE
Q psy1095 146 -SVEATARLE 154 (325)
Q Consensus 146 -~~~~~~~l~ 154 (325)
...+++.|.
T Consensus 82 ~~~~~sv~l~ 91 (92)
T cd04977 82 TESEATVNLK 91 (92)
T ss_pred CcceeEEEEE
Confidence 445666654
No 89
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.49 E-value=8.3e-13 Score=90.10 Aligned_cols=88 Identities=24% Similarity=0.424 Sum_probs=65.3
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCC-ceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM-KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 249 (325)
.....+.+|+.+.|.|.+.|.|. +.+.|++++..+...... ........ ....+.|.|.+++.+|+|.|.|.|.|
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~--p~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N 83 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPI--PEITWRRATRNFSEGDKSLDGRIVVRG--HARVSSLTLKDVQLTDAGRYDCEASN 83 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCC--CcEEEEECCcccCCCCccccceEEEeC--CccEEEEEECcCCcCcCEEeEEEEEe
Confidence 34567889999999999999988 899999988655432110 00111111 11346899999999999999999999
Q ss_pred CCCcEEeEEEEEE
Q psy1095 250 ELGEVVTSACLIV 262 (325)
Q Consensus 250 ~~~~~~~~~~l~v 262 (325)
..|....++.|.|
T Consensus 84 ~~G~~~~s~~l~v 96 (96)
T cd05732 84 RIGGDQQSMYLEV 96 (96)
T ss_pred CCCCcEEEEEEeC
Confidence 9999888777754
No 90
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.49 E-value=1.4e-12 Score=89.10 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=65.5
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCC-eeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCC-CCCeEEEEEEE
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP-EDEGEFTCRVA 248 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~ 248 (325)
.....+..|+.+.|.|.+.|.|. + .+.|++++..+......+.............+.|.|.++.. +|.|.|.|.|.
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~--P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~ 85 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPP--PDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAW 85 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCC--CCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEE
Confidence 34566889999999999999988 6 69999999888654322222222211122346899999999 45899999999
Q ss_pred eCCCcEEeEEEE
Q psy1095 249 NELGEVVTSACL 260 (325)
Q Consensus 249 ~~~~~~~~~~~l 260 (325)
|..|.....+.|
T Consensus 86 N~~G~~~~~~~L 97 (98)
T cd05758 86 NSFGSGTAIISL 97 (98)
T ss_pred cCCCcccEEEEe
Confidence 999998877665
No 91
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.49 E-value=4.9e-13 Score=86.08 Aligned_cols=70 Identities=23% Similarity=0.419 Sum_probs=56.5
Q ss_pred EEEEEEecCCCeeEEeeCCeeCCCCCcEEEE--e---cCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 85 FQCSVTGQPAPWTSWSKDGKPATPNARVTIR--E---KEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 85 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
|.|.+.|.|.|.++|||++.++....+.... . ......|.|.++...|+|.|+|.|.|..|...+.+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 7899999999999999999999766543221 1 12345799999999999999999999999877766554
No 92
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.49 E-value=4.4e-13 Score=87.62 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=62.4
Q ss_pred CeEEEEEEEEec--CCCeeEEeeCCeeCCC---CCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 81 DTVRFQCSVTGQ--PAPWTSWSKDGKPATP---NARVTIREK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 81 ~~v~l~C~~~~~--p~~~v~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
+++.|.|.+.+. +.+.+.|+++|+++.. ..++..... .....|.|.+++..|+|.|+|.+.|..+...++..|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999774 4778999999999952 224443221 2234699999999999999999999999999999999
Q ss_pred EECC
Q psy1095 155 IMDP 158 (325)
Q Consensus 155 v~~~ 158 (325)
|..+
T Consensus 81 V~~p 84 (85)
T cd05853 81 VRGP 84 (85)
T ss_pred EecC
Confidence 9875
No 93
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.49 E-value=7.1e-13 Score=89.15 Aligned_cols=81 Identities=28% Similarity=0.443 Sum_probs=63.0
Q ss_pred CCeeEecCCceEecCCC---eEEEEEEEEecCCCeeEEeeCCeeCCC-CCcEEEEecCCeEEEEEccCC-CCCCeEEEEE
Q psy1095 65 SPRFYAVPHNKICDLGD---TVRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKEDLRFLEISEVT-LEDAGLYTIK 139 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~---~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~ 139 (325)
.|.|...|....+.++. .+.|.|.+.|.|.|.++|+|++..+.. ..++.+. + ..|.|.++. ..|+|.|+|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~--g~L~I~~~~~~~D~G~Y~C~ 76 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--G--GNLVINNPDKYKDAGRYVCI 76 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--C--CEEEECcCCcCCCCEEEEEE
Confidence 47788888877665544 799999999999999999999988853 3344332 2 359998885 6899999999
Q ss_pred EEeCCeeEEE
Q psy1095 140 VENNYGSVEA 149 (325)
Q Consensus 140 ~~~~~~~~~~ 149 (325)
+.|..|....
T Consensus 77 A~N~~G~~~s 86 (93)
T cd05849 77 VSNIYGKVRS 86 (93)
T ss_pred EEeCcceEEE
Confidence 9999886543
No 94
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.48 E-value=5.9e-13 Score=86.76 Aligned_cols=76 Identities=26% Similarity=0.386 Sum_probs=60.8
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
|+.+.|.|.+.|.|. |.+.|++++..+....+.... ..+ ....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 1 G~~v~l~C~~~g~P~--p~v~W~~~~~~~~~~~~~~~~--~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 1 GETVEFTCVATGVPT--PIINWRLNWGHVPDSARVSIT--SEG----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP 72 (78)
T ss_pred CCEEEEEEEEEEecC--CEEEEEECCeECCCCCCEEEE--ECC----CEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence 678999999999998 899999998877654432222 222 346899999999999999999999999888776
Q ss_pred EEEE
Q psy1095 259 CLIV 262 (325)
Q Consensus 259 ~l~v 262 (325)
.+.+
T Consensus 73 ~~~~ 76 (78)
T cd05743 73 DGIL 76 (78)
T ss_pred cEEE
Confidence 6654
No 95
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.48 E-value=1e-12 Score=89.80 Aligned_cols=91 Identities=24% Similarity=0.429 Sum_probs=65.5
Q ss_pred CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC--CEEeccCC---CCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN--NRLIKLDS---DMKPEVQVDSKENLVIARLKIPHVYPED 239 (325)
Q Consensus 165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d 239 (325)
|.+.. +....+.+|+.+.|.|.+.|.|. +.+.|+++ +..+.... ..+....... ....|.|.+++.+|
T Consensus 3 p~i~~-~~~~~~~~G~~v~l~C~~~G~P~--p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~----~~~~L~I~~v~~~D 75 (98)
T cd05870 3 PHIIQ-LKNETTVENGAATLSCKAEGEPI--PEITWKRASDGHTFSEGDKSPDGRIEVKGQH----GESSLHIKDVKLSD 75 (98)
T ss_pred CEEEe-eccEEEcCCCcEEEEEecccCCC--CeEEEEECCCCceeccCCcCcCceEEEeecC----CeeEEEEeeCCcCC
Confidence 44433 45678889999999999999998 89999994 33332211 1111111111 23589999999999
Q ss_pred CeEEEEEEEeCCCcEEeEEEEEE
Q psy1095 240 EGEFTCRVANELGEVVTSACLIV 262 (325)
Q Consensus 240 ~G~Y~C~~~~~~~~~~~~~~l~v 262 (325)
+|.|.|.|.|..|....++.|.|
T Consensus 76 ~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 76 SGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CEEEEEEEeccCCcceeEEEEeC
Confidence 99999999999999888777753
No 96
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.48 E-value=3.5e-13 Score=86.02 Aligned_cols=70 Identities=24% Similarity=0.467 Sum_probs=57.2
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
+.|.|.+.|.|.|.+.|++++..+.... .... .....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999988775432 2222 23357999999999999999999999998888877765
No 97
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.48 E-value=8e-13 Score=85.80 Aligned_cols=72 Identities=29% Similarity=0.586 Sum_probs=56.4
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCC-cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE--EEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE--ATARLEIM 156 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~ 156 (325)
|+|.|.+.|.|.|.++|+|++.++.... ++.+.. ....|.|.+++.+|+|.|.|.+.|..|... ..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5799999999999999999999886543 333322 234799999999999999999999998764 34555553
No 98
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.48 E-value=1.2e-12 Score=89.37 Aligned_cols=88 Identities=24% Similarity=0.333 Sum_probs=69.1
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCC--CcEEEEec----CCeEEEEEccCCC-CCCeEE
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPN--ARVTIREK----EDLRFLEISEVTL-EDAGLY 136 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~-~d~G~Y 136 (325)
||.+. .+....+.+|+++.|.|.+.|.|.| .+.|++++..+... .++.+... ....+|.|.++.. +|.|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 56664 4566778999999999999999998 69999999888643 45555432 2235799999999 558999
Q ss_pred EEEEEeCCeeEEEEEEE
Q psy1095 137 TIKVENNYGSVEATARL 153 (325)
Q Consensus 137 ~C~~~~~~~~~~~~~~l 153 (325)
.|.+.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999987766554
No 99
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.48 E-value=6.7e-13 Score=83.90 Aligned_cols=68 Identities=28% Similarity=0.600 Sum_probs=54.8
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL 153 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 153 (325)
|+++.|.|.+.|.|.|.|+|+|++.++....+... ....|.|.++. |+|.|+|.+.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 68899999999999999999999998865544322 12358888874 7999999999999987776654
No 100
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.47 E-value=6.2e-13 Score=86.91 Aligned_cols=83 Identities=24% Similarity=0.350 Sum_probs=62.0
Q ss_pred CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC 259 (325)
Q Consensus 180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 259 (325)
+.+.|.|.+.+.+...+.+.|+++|..+.............+. ...+.|.|.+++..|+|.|+|.|.|..++...++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~--~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQ--DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccC--CCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 4689999998866444899999999999643221111111100 01248999999999999999999999999999999
Q ss_pred EEEEe
Q psy1095 260 LIVDV 264 (325)
Q Consensus 260 l~v~~ 264 (325)
|.|..
T Consensus 79 L~V~~ 83 (85)
T cd05853 79 LIVRG 83 (85)
T ss_pred EEEec
Confidence 99853
No 101
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.47 E-value=8.6e-13 Score=87.64 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=61.7
Q ss_pred CeEEEEEEEEecCCC--eeEEeeCCeeCCCCC---cEE-EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 81 DTVRFQCSVTGQPAP--WTSWSKDGKPATPNA---RVT-IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 81 ~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
+++.|.|.+.+.|.| .+.|++++..+.... ++. .........|.|.+++..|+|.|+|.+.|..+...+.+.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999877 669999999875332 221 11222345799999999999999999999999888899999
Q ss_pred EECC
Q psy1095 155 IMDP 158 (325)
Q Consensus 155 v~~~ 158 (325)
|..+
T Consensus 81 V~~p 84 (85)
T cd04970 81 VRGP 84 (85)
T ss_pred EECC
Confidence 8765
No 102
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.47 E-value=1.2e-12 Score=84.36 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=58.1
Q ss_pred EEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 183 ~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
.|.|.+.|+|. |+++|+++|..+..+..........+ .....+.|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus 2 ~i~~~v~G~P~--Pti~W~kng~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPK--PTLQWFHEGAILNESEYICTKIHVIN-NTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCC--CceEEEECCEECCCCcceeeeeEeec-ccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 47899999999 99999999999976554322111111 111346899999999999999999999999988777664
No 103
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.47 E-value=3.7e-13 Score=85.02 Aligned_cols=68 Identities=22% Similarity=0.390 Sum_probs=55.4
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|. |.+.|+|++.++..... . .. ...|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus 1 ~~~~c~v~G~P~--P~v~W~k~g~~l~~~~~--~---~~------~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 1 VKIPVKYYGYPP--PEVKWYKNGQLIVLNHT--F---KR------GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred CEEEeEEEEeCC--CEEEEEECCEECCCCCE--E---cc------CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 368999999999 89999999998865321 1 11 24799999999999999999999999877766665
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
+
T Consensus 68 l 68 (70)
T cd05864 68 L 68 (70)
T ss_pred E
Confidence 5
No 104
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.46 E-value=1e-12 Score=85.27 Aligned_cols=72 Identities=24% Similarity=0.456 Sum_probs=55.1
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
++|.|.+.|.|. |.+.|+|+|..+...... ...... ...|.|.++..+|+|.|.|.|.|..|....+..+.
T Consensus 1 v~L~C~~~g~P~--p~v~W~k~g~~l~~~~~~-~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~ 71 (77)
T cd05760 1 VTLRCHIDGHPR--PTYQWFRDGTPLSDGQGN-YSVSSK------ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT 71 (77)
T ss_pred CEEEEEeeecCC--CcEEEEECCEECCCCCcc-EEEeCC------CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence 579999999998 899999999987654321 111111 24899999999999999999999999876554444
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
+
T Consensus 72 l 72 (77)
T cd05760 72 L 72 (77)
T ss_pred E
Confidence 4
No 105
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.46 E-value=9.9e-13 Score=86.93 Aligned_cols=77 Identities=32% Similarity=0.602 Sum_probs=62.2
Q ss_pred EecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
....|+++.|.|.+.+.|.|.+.|++++..+....... .......|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 35679999999999999999999999998875543322 223346799999999999999999999999877766654
No 106
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.46 E-value=2.5e-12 Score=89.35 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=64.2
Q ss_pred cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCCeEEEEEEEeCCCcEEe
Q psy1095 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDEGEFTCRVANELGEVVT 256 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~ 256 (325)
.|..+.|.|.+.|.|+ +.+.|++++..+..... ..............+.|.|.++. .+|.|.|+|.|.|..|....
T Consensus 22 ~g~~v~L~C~a~G~P~--p~i~W~k~g~~l~~~~~-r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~ 98 (109)
T cd05773 22 GSSDANLVCQAQGVPR--VQFRWAKNGVPLDLGNP-RYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSL 98 (109)
T ss_pred CCCEEEEEEECcccCC--CEEEEEECCEECCCCCC-eEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcE
Confidence 4678999999999988 89999999988864321 11111111111124689999997 58999999999999999999
Q ss_pred EEEEEEEeeC
Q psy1095 257 SACLIVDVVK 266 (325)
Q Consensus 257 ~~~l~v~~~~ 266 (325)
.+.|.+...+
T Consensus 99 ~i~L~~~~~p 108 (109)
T cd05773 99 DIQLVSTSRP 108 (109)
T ss_pred EEEEEecCCC
Confidence 9998885443
No 107
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.46 E-value=8.4e-13 Score=88.68 Aligned_cols=76 Identities=36% Similarity=0.599 Sum_probs=62.0
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeC--------CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPA--------TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 151 (325)
|+++.|.|.+.+.|.|.+.|++++..+ ....++.+... ..|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 789999999999999999999987643 12334444322 3599999999999999999999999988889
Q ss_pred EEEEECC
Q psy1095 152 RLEIMDP 158 (325)
Q Consensus 152 ~l~v~~~ 158 (325)
.|.|...
T Consensus 78 ~l~V~~~ 84 (90)
T cd05726 78 YLEVTDV 84 (90)
T ss_pred EEEEeec
Confidence 9998764
No 108
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.46 E-value=1.1e-12 Score=85.48 Aligned_cols=72 Identities=15% Similarity=0.349 Sum_probs=58.0
Q ss_pred EecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095 69 YAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV 147 (325)
Q Consensus 69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 147 (325)
...|.+..+.+|+++.|.|.+.|.|.| .|.|+|++.++... . ......|.|..+ .|+|.|.|.+.|..|..
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL--NETSKFSCEAHNAKGVT 73 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence 456778889999999999999999999 79999999988641 1 112246888876 47899999999999855
Q ss_pred E
Q psy1095 148 E 148 (325)
Q Consensus 148 ~ 148 (325)
.
T Consensus 74 ~ 74 (81)
T cd05749 74 T 74 (81)
T ss_pred E
Confidence 4
No 109
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.45 E-value=1.2e-12 Score=88.88 Aligned_cols=84 Identities=31% Similarity=0.504 Sum_probs=63.4
Q ss_pred eEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCc--EEEEecCCeEEEEEccC-----CCCCCeEEEEEE
Q psy1095 68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR--VTIREKEDLRFLEISEV-----TLEDAGLYTIKV 140 (325)
Q Consensus 68 ~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~~ 140 (325)
|...|....+.+|+++.|.|.+.+.|.|.++|+|++..+..... ...... ..+.|.++ ...|.|.|+|.+
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccC---CeEEEeeeeccCCCCCcCEEEEEEE
Confidence 45677888889999999999999999999999999998865432 332222 23555555 689999999999
Q ss_pred EeC-CeeE-EEEEEEE
Q psy1095 141 ENN-YGSV-EATARLE 154 (325)
Q Consensus 141 ~~~-~~~~-~~~~~l~ 154 (325)
.|. .|.. ...+.|.
T Consensus 79 ~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 79 QNDSLGSIVSRTARLT 94 (95)
T ss_pred ECCccCcEEEeeeEEe
Confidence 999 8765 3444443
No 110
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.45 E-value=5e-13 Score=84.86 Aligned_cols=68 Identities=24% Similarity=0.417 Sum_probs=55.6
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL 260 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 260 (325)
|.|.|.+.|.|. +.+.|++++..+......... .. ..|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~--p~i~W~k~g~~~~~~~~~~~~--~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPE--PTITWNKDGVQVTESGKFHIS--PE-------GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCC--CEEEEEECCEECCCCCCEEEC--CC-------CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 579999999998 899999999887654332211 22 489999999999999999999999998877765
No 111
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.45 E-value=4.2e-13 Score=85.70 Aligned_cols=70 Identities=20% Similarity=0.433 Sum_probs=56.4
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|. |.+.|++++..+..... ..... ...|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 ~~L~C~~~G~P~--P~v~W~k~~~~~~~~~~---~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05876 1 LVLECIAEGLPT--PEVHWDRIDGPLSPNRT---KKLNN------NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT 69 (71)
T ss_pred CEEEEEeeEecC--CeEEEEECCcCCCCCce---eEEcC------CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence 479999999999 89999999876653321 11111 25899999999999999999999999998888877
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
|
T Consensus 70 V 70 (71)
T cd05876 70 V 70 (71)
T ss_pred E
Confidence 6
No 112
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.45 E-value=1.1e-12 Score=87.59 Aligned_cols=75 Identities=33% Similarity=0.554 Sum_probs=61.5
Q ss_pred cCCceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEE
Q psy1095 71 VPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE 148 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 148 (325)
.|....+.+|+++.|.|.+ .+.|.|.+.|++++..+... .++.... ...|.|.+++.+|+|.|+|.+.|..|...
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 4667788999999999998 68899999999999988763 3444332 24699999999999999999999888643
No 113
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.45 E-value=2.2e-12 Score=88.78 Aligned_cols=92 Identities=27% Similarity=0.489 Sum_probs=65.5
Q ss_pred CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCC---CCceEEEecCCcceeEEEEEe--CCCCCCC
Q psy1095 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDS---DMKPEVQVDSKENLVIARLKI--PHVYPED 239 (325)
Q Consensus 165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i--~~~~~~d 239 (325)
|.+...+....+.+|+.+.|.|.+.|.|. +.+.|++++..+.... .........+ ....+.+ ..++.+|
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~D 75 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPT--PTIQWLKNGQPLETDKDDPRSHRIVLPSG----SLFFLRVVHGRKGRSD 75 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCC--CEEEEEECCEECccccCCCCcceEEecCC----cEEEEEeeccCCCcCc
Confidence 56667777788999999999999999988 8999999998886521 1111111222 1122223 3447899
Q ss_pred CeEEEEEEEeCCCc-EEeEEEEEE
Q psy1095 240 EGEFTCRVANELGE-VVTSACLIV 262 (325)
Q Consensus 240 ~G~Y~C~~~~~~~~-~~~~~~l~v 262 (325)
+|.|+|.|.|..|. ....+.|.|
T Consensus 76 ~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 76 EGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CEEEEEEEEccccceecceEEEEe
Confidence 99999999999998 566666655
No 114
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.45 E-value=2.1e-12 Score=84.28 Aligned_cols=77 Identities=16% Similarity=0.285 Sum_probs=58.6
Q ss_pred EEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecC-CcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS-KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 183 ~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
.|.|.+.|.|. |.++|+|+|..+..+........... ......+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 2 ~i~~~v~G~P~--P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPK--PTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCC--CcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 47899999999 89999999999876553322211110 0112346899999999999999999999999998877765
No 115
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.45 E-value=1.4e-12 Score=84.69 Aligned_cols=74 Identities=30% Similarity=0.451 Sum_probs=60.1
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 156 (325)
+.|.|.+.|.|.|.+.|+|++..+.......+........|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 36899999999999999999998865543333222333579999999999999999999999988888888774
No 116
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.45 E-value=4.4e-13 Score=90.19 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=62.1
Q ss_pred ceEecCCCeEEEEEEEEe-----cCCCeeEEeeCCeeCCCC--CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095 74 NKICDLGDTVRFQCSVTG-----QPAPWTSWSKDGKPATPN--ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS 146 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 146 (325)
...+.+|+.+.|.|.+.+ .|.+.+.|||++..+... ...++... ...|.|.+++.+|+|.|+|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 455779999999999988 688899999998764321 12222222 246999999999999999999999998
Q ss_pred EEEEEEEEE
Q psy1095 147 VEATARLEI 155 (325)
Q Consensus 147 ~~~~~~l~v 155 (325)
....+.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 877777654
No 117
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.45 E-value=2.7e-12 Score=86.65 Aligned_cols=82 Identities=23% Similarity=0.480 Sum_probs=60.2
Q ss_pred CeeeecCcCeeEe---cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCC
Q psy1095 165 PKVLNGLENLRCC---DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDE 240 (325)
Q Consensus 165 p~~~~~~~~~~v~---~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~ 240 (325)
|.|...+.+..+. .|+.+.|.|.+.|.|. +.+.|++++..+......... ..+ ..|.|.++. .+|+
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~--P~i~W~k~g~~l~~~~~~~~~-~~~-------g~L~i~~~~~~~D~ 71 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPV--PTYRWLRNGTEIDTESDYRYS-LID-------GNLIISNPSEVKDS 71 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCC--CEEEEEECCeECccCCCceEE-eeC-------CeEEEccCCccCcC
Confidence 3444455454443 4789999999999998 899999999988644332221 122 378898875 6999
Q ss_pred eEEEEEEEeCCCcEEe
Q psy1095 241 GEFTCRVANELGEVVT 256 (325)
Q Consensus 241 G~Y~C~~~~~~~~~~~ 256 (325)
|.|.|.|.|..|...+
T Consensus 72 G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 72 GRYQCLATNSIGSILS 87 (94)
T ss_pred EEEEEEEEcCCCeEEe
Confidence 9999999999997754
No 118
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.44 E-value=8e-13 Score=85.53 Aligned_cols=71 Identities=34% Similarity=0.693 Sum_probs=55.8
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCC---CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATP---NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
+.|.|.+.|.|.|.++|+|++..... ..++.+.. ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP--EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEec--CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 46899999999999999998864322 22333322 2246999999999999999999999998888888776
No 119
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.44 E-value=4.5e-12 Score=85.65 Aligned_cols=82 Identities=27% Similarity=0.470 Sum_probs=60.4
Q ss_pred CeeeecCcCeeEecC---CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCC
Q psy1095 165 PKVLNGLENLRCCDG---DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDE 240 (325)
Q Consensus 165 p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~ 240 (325)
|.|...+....+.+| +.+.|.|.+.|.|. +.+.|++++..+......... ... ..|.|.++. ..|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~--p~i~W~~~g~~l~~~~~~~~~-~~~-------g~L~I~~~~~~~D~ 71 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPP--ATYRWKMNGTEIKFAPESRYT-LVA-------GNLVINNPQKARDA 71 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCC--CEEEEEECCEECccCCCceEE-EEC-------CeEEEccCCccCcC
Confidence 445555555555444 57999999999998 899999999988644332222 122 378888765 5999
Q ss_pred eEEEEEEEeCCCcEEe
Q psy1095 241 GEFTCRVANELGEVVT 256 (325)
Q Consensus 241 G~Y~C~~~~~~~~~~~ 256 (325)
|.|.|.|.|..|...+
T Consensus 72 G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 72 GSYQCLAINRCGTVVS 87 (94)
T ss_pred EEEEEEEEcCcCcEEE
Confidence 9999999999997754
No 120
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.44 E-value=1.2e-12 Score=84.48 Aligned_cols=73 Identities=30% Similarity=0.548 Sum_probs=59.0
Q ss_pred CCeEEEEEEEEecCCCeeEEee-CCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+...... ..|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN---GTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC---CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7889999999999999999997 5666655544443332 36999999999999999999999998877776654
No 121
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.44 E-value=1.6e-12 Score=82.89 Aligned_cols=69 Identities=25% Similarity=0.483 Sum_probs=56.7
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|+ +.+.|+|++..+..+... ... ...|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus 1 ~~l~c~v~g~P~--p~v~W~k~g~~l~~~~~~----~~~------~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 68 (71)
T cd04976 1 VRLPVKVKAYPP--PEIQWYKNGKLISEKNRT----KKS------GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT 68 (71)
T ss_pred CEEEeEEEEeCC--CEEEEEECCEECCCCCEE----EcC------CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence 469999999998 899999999988655221 122 25899999999999999999999999888777776
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
+
T Consensus 69 ~ 69 (71)
T cd04976 69 L 69 (71)
T ss_pred E
Confidence 5
No 122
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.44 E-value=2.5e-12 Score=86.11 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=61.0
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
...+.+|+.+.|.|.+.|. . +.+.|++++..+.... ......+ ..|.|.+++.+|+|.|.|.|.|..|
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~--p~i~W~kng~~l~~~~---~~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G 79 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-A--TYIWWVNNGSLLVPPR---LQLSNDN------RTLTFNNVTRSDTGHYQCEASNEVS 79 (91)
T ss_pred ccccccCCcEEEEEEeCCC-C--CEEEEEECCEECCCCC---EEEeCCC------CEEEECcCChhhCEEEEEEEEcCCC
Confidence 4578899999999999998 6 8999999998875332 1111222 4799999999999999999999999
Q ss_pred cEEe-EEEEEE
Q psy1095 253 EVVT-SACLIV 262 (325)
Q Consensus 253 ~~~~-~~~l~v 262 (325)
...+ .+.|.|
T Consensus 80 ~~~S~~~~L~V 90 (91)
T cd05740 80 NMTSDPYILNV 90 (91)
T ss_pred CEEeeeEEEEe
Confidence 7654 555554
No 123
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.43 E-value=8.6e-13 Score=83.87 Aligned_cols=69 Identities=39% Similarity=0.634 Sum_probs=56.3
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
++|.|.+.|.|.|.+.|+|++..+.. .++.... ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999999999999877654 3444432 236999999999999999999999998877777654
No 124
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.43 E-value=2.4e-12 Score=87.47 Aligned_cols=83 Identities=28% Similarity=0.507 Sum_probs=60.5
Q ss_pred cCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCC-----CCCCCeEEE
Q psy1095 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV-----YPEDEGEFT 244 (325)
Q Consensus 170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~ 244 (325)
.+....+.+|+++.|.|.+.+.|+ +.+.|+|++..+............++ .|.|.++ ...|.|.|.
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~--p~i~W~k~g~~l~~~~~~~~~~~~~~-------~l~i~~v~~~~~~~~D~G~Y~ 75 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPP--PKIEWKKDGVLLNLVSDERRQQLPNG-------SLLITSVVHSKHNKPDEGFYQ 75 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCC--CEEEEEECCeECccccCcceEEccCC-------eEEEeeeeccCCCCCcCEEEE
Confidence 345667778999999999999987 89999999998865443222222222 4555554 689999999
Q ss_pred EEEEeC-CCcE-EeEEEEE
Q psy1095 245 CRVANE-LGEV-VTSACLI 261 (325)
Q Consensus 245 C~~~~~-~~~~-~~~~~l~ 261 (325)
|.|.|. .|.. +..+.|.
T Consensus 76 C~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 76 CVAQNDSLGSIVSRTARLT 94 (95)
T ss_pred EEEECCccCcEEEeeeEEe
Confidence 999999 8876 4455554
No 125
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.43 E-value=1.1e-12 Score=85.62 Aligned_cols=77 Identities=17% Similarity=0.397 Sum_probs=60.9
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
...+.+|+.+.|.|.+.+. . +.+.|+|+|.++....+.. ..+ ..|.|.+++.+|+|.|+|.|.|..|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~--~~v~W~k~g~~l~~~~~~~----~~~------~~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-V--QSINWTKDGVQLGENNRTR----ITG------EEVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred cEEecCCCCEEEEEEecCC-C--ceEEEeeCCcCCCCCceEE----EeC------CEEEECCCChhhCEEEEEEEeCCCC
Confidence 4567889999999999875 3 6799999998886543322 112 3799999999999999999999988
Q ss_pred cEEeEEEEEE
Q psy1095 253 EVVTSACLIV 262 (325)
Q Consensus 253 ~~~~~~~l~v 262 (325)
.....+.|.|
T Consensus 70 ~~~~~~~v~V 79 (79)
T cd04973 70 SDTTYFSVNV 79 (79)
T ss_pred cccEEEEEeC
Confidence 8776666543
No 126
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.42 E-value=1.8e-12 Score=86.98 Aligned_cols=76 Identities=34% Similarity=0.581 Sum_probs=58.1
Q ss_pred CCeEEEEEEEEecCCCeeEEeeC----CeeCCCCCc--EEEEe-------cCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKD----GKPATPNAR--VTIRE-------KEDLRFLEISEVTLEDAGLYTIKVENNYGS 146 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~----~~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 146 (325)
|+++.|.|.+.|.|.|.++|+|+ +..+..... ..+.. .+....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 343332221 11111 112357999999999999999999999998
Q ss_pred EEEEEEEEE
Q psy1095 147 VEATARLEI 155 (325)
Q Consensus 147 ~~~~~~l~v 155 (325)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888888776
No 127
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.42 E-value=5.3e-12 Score=84.38 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=61.1
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeC-CEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 249 (325)
+....+..|+.+.|.|.+.|.|. .+.|+++ +..+..+.+... ...+ ....|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~---~v~W~k~~g~~~~~~~r~~~--~~~g----~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE---SIDWYNPQGEKIVSSQRVVV--QKEG----VRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC---eEEEEeCCCeEecCCCCEEE--EeCC----CeeEEEEecCChHHCEEEEEEEEc
Confidence 34567889999999999999774 6899984 556544433222 2223 235899999999999999999999
Q ss_pred CCCcE-EeEEEEEE
Q psy1095 250 ELGEV-VTSACLIV 262 (325)
Q Consensus 250 ~~~~~-~~~~~l~v 262 (325)
..|.. ..++.|.+
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 99875 44555543
No 128
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.42 E-value=2.2e-12 Score=85.71 Aligned_cols=83 Identities=25% Similarity=0.351 Sum_probs=60.8
Q ss_pred CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC 259 (325)
Q Consensus 180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 259 (325)
+.+.|.|.+.+.|.+...+.|++++..+.............. ....+.|.|.+++..|+|.|+|.|.|..|....++.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG--KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEec--ccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 468999999999874347899999988764322110000000 002358999999999999999999999999999988
Q ss_pred EEEEe
Q psy1095 260 LIVDV 264 (325)
Q Consensus 260 l~v~~ 264 (325)
|.|..
T Consensus 79 l~V~~ 83 (85)
T cd04970 79 LIVRG 83 (85)
T ss_pred EEEEC
Confidence 88843
No 129
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.42 E-value=2.3e-12 Score=81.43 Aligned_cols=68 Identities=22% Similarity=0.506 Sum_probs=54.0
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
|+.+.|.|.+.|.|. |.+.|++++..+....... . ....|.|.++. |+|.|+|.|.|..|....++
T Consensus 1 G~~v~L~C~a~G~P~--P~v~W~k~g~~l~~~~~~~----~------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a 66 (69)
T cd05739 1 GGSVNLTCVAVGAPM--PYVKWMKGGEELTKEDEMP----V------GRNVLELTNIY--ESANYTCVAISSLGMIEATA 66 (69)
T ss_pred CCeEEEEEEeeecCC--CEEEEEECCEECCCcccee----c------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEE
Confidence 678999999999999 8999999998875433211 1 12478898874 79999999999999888776
Q ss_pred EE
Q psy1095 259 CL 260 (325)
Q Consensus 259 ~l 260 (325)
.|
T Consensus 67 ~l 68 (69)
T cd05739 67 QV 68 (69)
T ss_pred EE
Confidence 65
No 130
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.42 E-value=1.8e-12 Score=85.69 Aligned_cols=78 Identities=27% Similarity=0.463 Sum_probs=61.2
Q ss_pred eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 254 (325)
....|+.+.|.|.+.+.|. +.+.|++++..+........ .. ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 5 ~~~~G~~v~L~C~~~g~p~--p~i~W~k~~~~~~~~~~~~~----~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 74 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPR--PDITWLKDNKPLTPTEIGES----RK----KKWTLSLKNLKPEDSGKYTCHVSNRAGEI 74 (82)
T ss_pred eccCCCeEEEEEEeeEeCC--CcEEEEECCcCCcCCcccee----cC----ceEEEEEccCChhhCEEEEEEEEcCCccE
Confidence 3557999999999999988 78999999887754332111 11 23689999999999999999999999988
Q ss_pred EeEEEEEE
Q psy1095 255 VTSACLIV 262 (325)
Q Consensus 255 ~~~~~l~v 262 (325)
...+.|.|
T Consensus 75 ~~~~~v~v 82 (82)
T cd05856 75 NATYKVDV 82 (82)
T ss_pred EEEEEEeC
Confidence 77766653
No 131
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.41 E-value=2.4e-12 Score=82.93 Aligned_cols=70 Identities=29% Similarity=0.454 Sum_probs=54.9
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCC--CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATP--NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATARLEI 155 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 155 (325)
++|.|.+.|.|.|.++|+|++.++.. ..++.... ...|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLR---SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcC---CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999999999999988863 33444322 2359999999999999999999998864 45555554
No 132
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.41 E-value=3.4e-12 Score=82.22 Aligned_cols=72 Identities=24% Similarity=0.418 Sum_probs=55.3
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE-EeEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV-VTSACL 260 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l 260 (325)
++|.|.+.|.|. |.+.|++++..+............. ..|.|.+++.+|+|.|.|.|.|..|.. ...+.|
T Consensus 1 a~l~C~~~G~P~--p~v~W~k~~~~~~~~~~~~~~~~~~-------g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l 71 (74)
T cd05738 1 ATMLCAASGNPD--PEITWFKDFLPVDTTSNGRIKQLRS-------GALQIENSEESDQGKYECVATNSAGTRYSAPANL 71 (74)
T ss_pred CEEEEEEeEecC--CEEEEEECCEECccCCCCCEEEcCC-------cEEEECCCChhhCEEEEEEEECCCCceEcccEEE
Confidence 479999999998 8999999998876433222222122 379999999999999999999999974 556666
Q ss_pred EE
Q psy1095 261 IV 262 (325)
Q Consensus 261 ~v 262 (325)
.|
T Consensus 72 ~v 73 (74)
T cd05738 72 YV 73 (74)
T ss_pred EE
Confidence 55
No 133
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.41 E-value=7.5e-13 Score=85.65 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=56.0
Q ss_pred CeeEecCCceEecCCCeEEEEEEEEecCC-CeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPA-PWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
|.+...|....+.+|++|+|.|.+.+.|. +.+.|++++..+.. ....|.|.++ .+|+|.|+|.+.+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 57788888889999999999999988775 46999999988732 1235889999 99999999999764
No 134
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.41 E-value=2e-12 Score=82.78 Aligned_cols=70 Identities=29% Similarity=0.479 Sum_probs=56.6
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 155 (325)
+.|.|.+.|.|.|.+.|++++..+... +.... .....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 479999999999999999998877543 22222 22357999999999999999999999998887777765
No 135
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.41 E-value=6.4e-12 Score=84.49 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=57.9
Q ss_pred CeeeecCcCeeEec---CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCC
Q psy1095 165 PKVLNGLENLRCCD---GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDE 240 (325)
Q Consensus 165 p~~~~~~~~~~v~~---g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~ 240 (325)
|.|...+....+.+ |..+.|.|.+.|.|. +.+.|++++..+..... ... ... ..|.|.++. .+|+
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~--P~i~W~k~~~~i~~~~~-~~~-~~~-------g~L~I~~~~~~~D~ 70 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPF--PIYKWRKNNLDIDLTND-RYS-MVG-------GNLVINNPDKYKDA 70 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCC--CEEEEEECCEEccCCCC-eEE-EEC-------CEEEECcCCcCCCC
Confidence 34444444443333 447999999999998 89999999988753322 111 122 479999885 6899
Q ss_pred eEEEEEEEeCCCcEEe
Q psy1095 241 GEFTCRVANELGEVVT 256 (325)
Q Consensus 241 G~Y~C~~~~~~~~~~~ 256 (325)
|.|.|.|.|..|...+
T Consensus 71 G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 71 GRYVCIVSNIYGKVRS 86 (93)
T ss_pred EEEEEEEEeCcceEEE
Confidence 9999999999997654
No 136
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.40 E-value=1.5e-12 Score=87.29 Aligned_cols=76 Identities=29% Similarity=0.518 Sum_probs=57.4
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCC----eeCCCC--CcEEEEe-------cCCeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDG----KPATPN--ARVTIRE-------KEDLRFLEISEVTLEDAGLYTIKVENNYGS 146 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~----~~~~~~--~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 146 (325)
|+.+.|.|.+.|.|.|.|+|+|++ ..+... ....... .+....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 222211 1111111 123357999999999999999999999998
Q ss_pred EEEEEEEEE
Q psy1095 147 VEATARLEI 155 (325)
Q Consensus 147 ~~~~~~l~v 155 (325)
..+++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888888876
No 137
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.40 E-value=3.9e-12 Score=85.28 Aligned_cols=82 Identities=27% Similarity=0.360 Sum_probs=58.2
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCC----EEeccCCCCceEEEec---CCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNN----RLIKLDSDMKPEVQVD---SKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
|+.+.|.|.+.|.|. |.+.|+|++ ..+............. .........|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~v~g~P~--P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKVYSDAQ--PHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEEeCCCC--CeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 678999999999998 899999963 2322211111111110 0000123579999999999999999999999
Q ss_pred CcEEeEEEEEE
Q psy1095 252 GEVVTSACLIV 262 (325)
Q Consensus 252 ~~~~~~~~l~v 262 (325)
|....++.|.|
T Consensus 79 G~~~~sa~L~V 89 (90)
T cd04974 79 GPSHHSAWLTV 89 (90)
T ss_pred CcccCCEEEEe
Confidence 99999988877
No 138
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.40 E-value=2.9e-12 Score=83.06 Aligned_cols=69 Identities=35% Similarity=0.509 Sum_probs=55.7
Q ss_pred EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEE---EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095 83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVT---IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151 (325)
Q Consensus 83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 151 (325)
+.|.|.+.+ .|.|.+.|+|++.++....+.. +........|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 469999999 8999999999999887554322 33334457899999999999999999999998766554
No 139
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.40 E-value=5e-12 Score=82.03 Aligned_cols=74 Identities=24% Similarity=0.464 Sum_probs=60.0
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|+ +.+.|++++..+.............+ ..|.|.++..+|.|.|+|.+.|..|.....+.|.
T Consensus 1 ~~L~C~v~g~P~--p~v~W~k~~~~l~~~~~~~~~~~~~~------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (76)
T cd05736 1 ASLRCHAEGIPL--PRLTWLKNGMDITPKLSKQLTLIANG------SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLF 72 (76)
T ss_pred CEeEeEeeecCC--CEEEEEECCEECCCCCCccEEEeCCC------CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEE
Confidence 368999999988 89999999998765544333322222 4799999999999999999999999999998888
Q ss_pred EE
Q psy1095 262 VD 263 (325)
Q Consensus 262 v~ 263 (325)
|.
T Consensus 73 V~ 74 (76)
T cd05736 73 VE 74 (76)
T ss_pred EE
Confidence 73
No 140
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.40 E-value=2.7e-12 Score=83.08 Aligned_cols=73 Identities=23% Similarity=0.387 Sum_probs=55.4
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccC-CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLD-SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL 260 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 260 (325)
+.|.|.+.|.|. |.+.|++++...... ..........+ ..|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus 1 a~l~C~~~G~P~--P~v~W~k~~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l 72 (75)
T cd05763 1 ARLECAATGHPT--PQIAWQKDGGTDFPAARERRMHVMPED------DVFFIVDVKIEDTGVYSCTAQNTAGSISANATL 72 (75)
T ss_pred CEeEeecccccC--CEEEEEeCCCccCCcccccceEEecCC------CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence 478999999998 899999988643221 11111111122 479999999999999999999999999888888
Q ss_pred EE
Q psy1095 261 IV 262 (325)
Q Consensus 261 ~v 262 (325)
.|
T Consensus 73 ~V 74 (75)
T cd05763 73 TV 74 (75)
T ss_pred EE
Confidence 76
No 141
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.39 E-value=4.9e-12 Score=84.89 Aligned_cols=82 Identities=28% Similarity=0.389 Sum_probs=58.6
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeC----CEEeccCCCCceEEEecCC---cceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRN----NRLIKLDSDMKPEVQVDSK---ENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
|+.+.|.|.+.+.|. |.+.|+++ +..+.............+. .....+.|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~~g~P~--P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVYSDAQ--PHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEecCCC--CEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 678999999999998 89999984 3333322211111111110 00123689999999999999999999999
Q ss_pred CcEEeEEEEEE
Q psy1095 252 GEVVTSACLIV 262 (325)
Q Consensus 252 ~~~~~~~~l~v 262 (325)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99998888877
No 142
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=2.7e-12 Score=84.55 Aligned_cols=76 Identities=33% Similarity=0.514 Sum_probs=55.6
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCe---e--CCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGK---P--ATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~---~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
|+++.|.|.+.|.|.|.++|+|++. . +................|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7889999999999999999999742 1 1111100000111235799999999999999999999999888777765
Q ss_pred E
Q psy1095 155 I 155 (325)
Q Consensus 155 v 155 (325)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 143
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.39 E-value=2.1e-12 Score=86.92 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=61.6
Q ss_pred CeeEecCCcEEEEEEEEe-----cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095 173 NLRCCDGDSVTFECQVQV-----VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~-----~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 247 (325)
...+.+|+.+.|.|.+.+ .|. +.+.|+|++..+.............+ ..|.|.++..+|+|.|.|.+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~--~~v~Wyk~~~~~~~~~~~~~r~~~~~------~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPG--LNLTWYKSDGKTPIPTEERSRMHQQK------DLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCC--ceEEEEEcCCCCcccccccceeeecC------CeEEEccCCcccCeEEEEEE
Confidence 445678999999999988 455 78999999866432211111111222 47999999999999999999
Q ss_pred EeCCCcEEeEEEEEE
Q psy1095 248 ANELGEVVTSACLIV 262 (325)
Q Consensus 248 ~~~~~~~~~~~~l~v 262 (325)
.|..|.....+.|.|
T Consensus 80 ~N~~g~~~~~~~L~v 94 (94)
T cd05756 80 RNSTYCMKVSISLTV 94 (94)
T ss_pred cCCCccEEEEEEEEC
Confidence 999999888887764
No 144
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.39 E-value=2.1e-12 Score=82.70 Aligned_cols=70 Identities=29% Similarity=0.551 Sum_probs=55.8
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|. +.+.|++++..+..... .... ....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 v~l~C~~~g~P~--p~v~W~k~~~~~~~~~~---~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05731 1 LLLECIAEGLPT--PEISWIKIGGELPADRT---KFEN------FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVT 69 (71)
T ss_pred CEEEEEeeEecC--CeEEEEECCeECCCCce---eEec------CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence 479999999998 89999999887643211 1111 125899999999999999999999999988888776
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
|
T Consensus 70 V 70 (71)
T cd05731 70 V 70 (71)
T ss_pred E
Confidence 6
No 145
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.39 E-value=1.5e-12 Score=95.10 Aligned_cols=111 Identities=14% Similarity=0.247 Sum_probs=75.6
Q ss_pred CCCCcccCCCCCCCccccccccccc-----ccccCCCCeeEecCCceEecCCCeEEEEEEEEec-CC-CeeEEeeCCeeC
Q psy1095 34 STPPRSISPLSSRTFTPYSLNSAIR-----TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-PA-PWTSWSKDGKPA 106 (325)
Q Consensus 34 ~l~i~~v~~~d~G~Y~c~~~~~~~~-----~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~v~W~~~~~~~ 106 (325)
+|+|.+++.+|+|.|.|.+.+..+. .+.+..+|.+...+......+|+.+.|.|.+.+. |. +.|.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 6889999999999999998664332 2345588888877776655689999999999884 54 489999987542
Q ss_pred CC----CCcEE---EE-ecCC----eEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095 107 TP----NARVT---IR-EKED----LRFLEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 107 ~~----~~~~~---~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
.. ..... .. ..++ ...|.+.....++.+.|+|.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 11 01111 11 1111 2346666555556779999997654
No 146
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.39 E-value=6.4e-12 Score=81.80 Aligned_cols=71 Identities=18% Similarity=0.397 Sum_probs=56.1
Q ss_pred cCcCeeEecCCcEEEEEEEEecCCCCC-eeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095 170 GLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248 (325)
Q Consensus 170 ~~~~~~v~~g~~v~l~C~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 248 (325)
.+.+..+..|+.+.|.|.+.|.|. | .+.|++++..+..... . ..+.|.|..+ .|.|.|.|.|.
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~--P~~I~W~k~g~~l~~~~~------~------~~s~L~i~~~--~d~g~Y~C~A~ 67 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPE--PVEILWWQGGSPLGDPPA------P------SPSVLNVPGL--NETSKFSCEAH 67 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecC--CeEEEEEECCEECCCCCC------C------CCCEEEEccc--cCCeEEEEEEE
Confidence 345678889999999999999998 7 7999999998754111 1 1247888877 47899999999
Q ss_pred eCCCcEEe
Q psy1095 249 NELGEVVT 256 (325)
Q Consensus 249 ~~~~~~~~ 256 (325)
|..|...+
T Consensus 68 N~~G~~~s 75 (81)
T cd05749 68 NAKGVTTS 75 (81)
T ss_pred eccCcEEe
Confidence 99996654
No 147
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.39 E-value=4.7e-12 Score=80.09 Aligned_cols=66 Identities=35% Similarity=0.449 Sum_probs=51.5
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR 152 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 152 (325)
+.|.|.+.|.|.|++.|+|++.++... .++.. .+ .+|.|.+++.+|+|.|+|.+.+..........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~--~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~ 67 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV--DG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLT 67 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe--CC--CEEEECcCCHHHCEEEEEEEEccccceEeeEE
Confidence 468999999999999999999998754 23322 22 36999999999999999999987554444333
No 148
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.38 E-value=3.8e-12 Score=80.89 Aligned_cols=69 Identities=32% Similarity=0.529 Sum_probs=55.1
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|+ +.+.|++++..+... +... ... ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 v~l~C~~~g~P~--p~v~W~k~~~~~~~~-~~~~--~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPV--PTVLWRKEDGELPKG-RAEI--LDD-------KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECccCCC--CEEEEEECCccCCCC-cEEE--eeC-------CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 479999999988 899999998766432 2111 122 4799999999999999999999999988887776
Q ss_pred E
Q psy1095 262 V 262 (325)
Q Consensus 262 v 262 (325)
|
T Consensus 69 V 69 (69)
T cd05725 69 V 69 (69)
T ss_pred C
Confidence 4
No 149
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.38 E-value=4e-12 Score=82.09 Aligned_cols=73 Identities=29% Similarity=0.483 Sum_probs=56.5
Q ss_pred CCcEEEEEEEEecCCCCCeeEEee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 257 (325)
|+.+.|.|.+.|.|. +.+.|++ ++..+...... ..... ..|.|.++..+|.|.|+|.|.|..|.....
T Consensus 1 G~~~~l~C~~~g~P~--p~v~W~~~~~~~~~~~~~~--~~~~~-------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 69 (74)
T cd05764 1 GQRATLRCKARGDPE--PAIHWISPDGKLISNSSRT--LVYDN-------GTLDILITTVKDTGSFTCIASNAAGEATAT 69 (74)
T ss_pred CCeEEEEEEccCcCC--CEEEEEeCCCEEecCCCeE--EEecC-------CEEEEEECChhhCEEEEEEEECCCCeEEEE
Confidence 678999999999888 8999997 55555433221 11122 379999999999999999999999998877
Q ss_pred EEEEE
Q psy1095 258 ACLIV 262 (325)
Q Consensus 258 ~~l~v 262 (325)
+.|.|
T Consensus 70 ~~l~v 74 (74)
T cd05764 70 VELHI 74 (74)
T ss_pred EEEEC
Confidence 77654
No 150
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.38 E-value=2.7e-12 Score=83.07 Aligned_cols=67 Identities=21% Similarity=0.439 Sum_probs=53.3
Q ss_pred eeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095 166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245 (325)
Q Consensus 166 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 245 (325)
.+...+....+.+|+.++|.|.+.+.|.. ..+.|++++..+... ...|.|.++ .+|+|.|.|
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~-~~~~W~kng~~l~~~----------------~~~l~i~~~-~~dsG~Y~C 63 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQ-NSTQWYHNGKLLETT----------------TNSYRIRAA-NNDSGEYRC 63 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCC-ccEEEEECCEEeecc----------------CCeEEEeec-ccCCEEeEE
Confidence 34455566788999999999999887653 569999999877321 137899999 999999999
Q ss_pred EEEeC
Q psy1095 246 RVANE 250 (325)
Q Consensus 246 ~~~~~ 250 (325)
.|.+.
T Consensus 64 ~a~~~ 68 (78)
T cd05752 64 QTQGS 68 (78)
T ss_pred ECCCC
Confidence 99875
No 151
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.38 E-value=1.2e-11 Score=83.20 Aligned_cols=83 Identities=28% Similarity=0.383 Sum_probs=58.8
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEee-CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 249 (325)
+....+..|+.+.|.|.+.|.| +.+.|++ ++..+....+.... ..+ ...+.|.|.+++.+|+|.|+|.|.|
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p---~~i~W~~~~~~~~~~~~~~~~~--~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEP---KDISWFSPNGEKLVTQQQISVV--QND---DVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeC---CeEEEECCCCCEeccCCCEEEE--eCC---CCEEEEEEecCCcccCEEEEEEEEc
Confidence 3456788999999999999984 4799998 55555443322111 111 1346899999999999999999999
Q ss_pred CCC-cEEeEEEEE
Q psy1095 250 ELG-EVVTSACLI 261 (325)
Q Consensus 250 ~~~-~~~~~~~l~ 261 (325)
..| ....++.|.
T Consensus 79 ~~g~~~~~sv~l~ 91 (92)
T cd04977 79 AKGTESEATVNLK 91 (92)
T ss_pred CCCCcceeEEEEE
Confidence 865 445555543
No 152
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.37 E-value=8.1e-12 Score=83.30 Aligned_cols=80 Identities=25% Similarity=0.469 Sum_probs=60.5
Q ss_pred cCeeEecCCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095 172 ENLRCCDGDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 250 (325)
....+.+|+.+.|.|.+ .+.|. +.+.|++++..+...... ...... ..|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~--p~i~W~k~g~~~~~~~~~-~~~~~~-------~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPE--PTVSWRKDGQPLNLDNER-VRIVDD-------GNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCC--CEEEEEECCEECCCCCCC-EEEccC-------CEEEEeECCcccCEEEEEEEEec
Confidence 45678899999999998 67777 899999999887653221 111112 47999999999999999999999
Q ss_pred CCcEE-eEEEEE
Q psy1095 251 LGEVV-TSACLI 261 (325)
Q Consensus 251 ~~~~~-~~~~l~ 261 (325)
.|... ..+.|.
T Consensus 74 ~G~~~s~~~~l~ 85 (86)
T cd05724 74 VGERESAAARLS 85 (86)
T ss_pred cCceeeeeEEEE
Confidence 98754 344443
No 153
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.37 E-value=5.8e-12 Score=84.60 Aligned_cols=77 Identities=30% Similarity=0.457 Sum_probs=59.4
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEecc------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKL------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
|+.+.|.|.+.+.|. +.+.|++++..+.. ....+..... ...|.|.+++.+|+|.|.|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~--p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G 71 (90)
T cd05726 1 GRTVTFQCEATGNPQ--PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-------TGDLTITNVQRSDVGYYICQTLNVAG 71 (90)
T ss_pred CCEEEEEEECCccCC--CEEEEEeCCCcceeecccCCCCCCeEEECC-------CCeEEEeeCChhhCEEEEEEEEcCCC
Confidence 678999999999988 89999998764321 0111111111 24799999999999999999999999
Q ss_pred cEEeEEEEEEEe
Q psy1095 253 EVVTSACLIVDV 264 (325)
Q Consensus 253 ~~~~~~~l~v~~ 264 (325)
.....+.|.|..
T Consensus 72 ~~~~~~~l~V~~ 83 (90)
T cd05726 72 SILTKAYLEVTD 83 (90)
T ss_pred ceEEEEEEEEee
Confidence 999999998854
No 154
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.36 E-value=1.8e-11 Score=82.42 Aligned_cols=79 Identities=28% Similarity=0.449 Sum_probs=60.1
Q ss_pred CeeEecCCceEecC---CCeEEEEEEEEecCCCeeEEeeCCeeCCCC--CcEEEEecCCeEEEEEccCC-CCCCeEEEEE
Q psy1095 66 PRFYAVPHNKICDL---GDTVRFQCSVTGQPAPWTSWSKDGKPATPN--ARVTIREKEDLRFLEISEVT-LEDAGLYTIK 139 (325)
Q Consensus 66 p~~~~~~~~~~v~~---g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~ 139 (325)
|.|...|....+.+ |+++.|.|.+.|.|.|.++|++++..+... .++... + ..|.|.++. ..|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV--G--GNLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE--C--CEEEEecCCccCCCEEEEEE
Confidence 66777777765544 467999999999999999999999988432 233322 2 258888876 4899999999
Q ss_pred EEeCCeeEE
Q psy1095 140 VENNYGSVE 148 (325)
Q Consensus 140 ~~~~~~~~~ 148 (325)
+.|..|...
T Consensus 78 a~N~~G~~~ 86 (91)
T cd04967 78 ASNIVGTVL 86 (91)
T ss_pred EEcCCCEEE
Confidence 999988643
No 155
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.36 E-value=3e-11 Score=81.14 Aligned_cols=91 Identities=18% Similarity=0.347 Sum_probs=66.7
Q ss_pred ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCC-CeEEEEEE
Q psy1095 169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED-EGEFTCRV 247 (325)
Q Consensus 169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~ 247 (325)
.......+.+|+.+.|.|.+.+.|++ ..+.|.+.+..+......+.............+.|.|.++...| .|.|.|.|
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~P-~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a 84 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPPP-DRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA 84 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCCC-cEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence 44456778899999999999888874 57889888777655432233322221122256899999998766 79999999
Q ss_pred EeCCCcEEeEEEE
Q psy1095 248 ANELGEVVTSACL 260 (325)
Q Consensus 248 ~~~~~~~~~~~~l 260 (325)
.|..|.....+.|
T Consensus 85 ~N~~G~d~~~i~L 97 (98)
T cd05898 85 WNSFGSGTAIIQL 97 (98)
T ss_pred EeCCccceEEEEe
Confidence 9999998877665
No 156
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.36 E-value=1.3e-11 Score=81.37 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=56.6
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCCCC----cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe--eEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG--SVEATARL 153 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l 153 (325)
|++++|.|.+.+.|.+.+.|+++++...... +..+.......+|.|.+++.+|+|.|.|.+.+... ...+++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998776432211 11111122256799999999999999999998765 45667777
Q ss_pred EEE
Q psy1095 154 EIM 156 (325)
Q Consensus 154 ~v~ 156 (325)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 764
No 157
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.36 E-value=1.4e-11 Score=82.82 Aligned_cols=81 Identities=22% Similarity=0.380 Sum_probs=59.0
Q ss_pred CceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC--------CCCCcEEEEecC-CeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA--------TPNARVTIREKE-DLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 73 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
.+..+.+|+++.|.|.+.+.|.|.+.|++++..+ ....++.+.... ....|.|.+++.+|+|.|+|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 4567899999999999999999999999877532 122344433322 3578999999999999999999762
Q ss_pred CeeEEEEEEEE
Q psy1095 144 YGSVEATARLE 154 (325)
Q Consensus 144 ~~~~~~~~~l~ 154 (325)
....+...|.
T Consensus 85 -~~~~~~~~~~ 94 (95)
T cd05882 85 -PVRTAKATVT 94 (95)
T ss_pred -ccccEEEEEE
Confidence 2334444443
No 158
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.34 E-value=5.4e-12 Score=81.90 Aligned_cols=66 Identities=24% Similarity=0.463 Sum_probs=49.6
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCC----CCCeEEEEEEEeCCeeEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL----EDAGLYTIKVENNYGSVE 148 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~ 148 (325)
+.|.|.+.|.|.|.++|+|++..+.......+........|.|.++.. +|+|.|+|.+.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 479999999999999999999988543322222223345688887753 789999999999988643
No 159
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.34 E-value=8.3e-12 Score=78.97 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=52.8
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 261 (325)
+.|.|.+.|.|+ |.+.|+|++.++..... .. ...+ ..|.|.++..+|+|.|+|.|.|..........++
T Consensus 1 ~~l~c~v~g~P~--P~v~W~kdg~~l~~~~~-~~--~~~~------~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPA--PEVIWLKDGLPAAEKCS-RY--HVDG------YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCC--CeEEEEECCEECCCCCc-EE--EeCC------CEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 368999999999 89999999988765322 11 1222 3799999999999999999999866655554443
No 160
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.34 E-value=2.4e-11 Score=82.03 Aligned_cols=82 Identities=24% Similarity=0.286 Sum_probs=59.9
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEeeCC--------eeCCCCCcEEEEec-CCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--------KPATPNARVTIREK-EDLRFLEISEVTLEDAGLYTIKVEN 142 (325)
Q Consensus 72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~--------~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~ 142 (325)
+.+..+.+|+++.|.|.+.+.|.+.+.|++.+ .......++..... ....+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 45678999999999999999999999998632 22223446554332 3456899999999999999999986
Q ss_pred CCeeEEEEEEEE
Q psy1095 143 NYGSVEATARLE 154 (325)
Q Consensus 143 ~~~~~~~~~~l~ 154 (325)
... ......|.
T Consensus 84 ~~~-~~~~~~l~ 94 (95)
T cd07701 84 MPV-KTSKAYLT 94 (95)
T ss_pred ecC-ccEEEEEE
Confidence 432 24455544
No 161
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.33 E-value=1.5e-11 Score=79.68 Aligned_cols=72 Identities=22% Similarity=0.490 Sum_probs=55.4
Q ss_pred EEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCce-EEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095 182 VTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKP-EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC 259 (325)
Q Consensus 182 v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 259 (325)
+.|.|.+.+ .|+ +.+.|++++..+........ ...... ....|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~--p~~~W~k~g~~l~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPS--LRFKWFKDGKELNRKNKPRNIKIRNKK----KNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCC--ceEEEEcCCeeccccCCcceEEEEecC----ceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 777 89999999998875544321 111111 3468999999999999999999999998776653
No 162
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.33 E-value=3e-11 Score=79.33 Aligned_cols=68 Identities=26% Similarity=0.430 Sum_probs=55.6
Q ss_pred cCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCC-CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
.|....+..|+++.|.|.+.+ +.+.+.|++++.++... .++.+. .+ .|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~-~~---~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY-RD---GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE-CC---cEEEeCCCHHHCEEEEEEEEec
Confidence 466788999999999999754 67899999999999765 344432 22 4999999999999999999765
No 163
>KOG3515|consensus
Probab=99.33 E-value=2e-11 Score=108.43 Aligned_cols=283 Identities=15% Similarity=0.236 Sum_probs=157.5
Q ss_pred CCCCCCCcccCCCCCCCcccccccccccccccC--------C-CCeeEe--cCCceEecCCCeEEEEEEEE-ecCCCeeE
Q psy1095 31 TPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLT--------S-SPRFYA--VPHNKICDLGDTVRFQCSVT-GQPAPWTS 98 (325)
Q Consensus 31 ~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~--------~-~p~~~~--~~~~~~v~~g~~v~l~C~~~-~~p~~~v~ 98 (325)
.++-+.+...+-+|.|+|+|.+.+......... . ...+.. ...-..+.+|+.+.|.|.+. +.|.+.++
T Consensus 161 ~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~ 240 (741)
T KOG3515|consen 161 EPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQT 240 (741)
T ss_pred cccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhh
Confidence 356677889999999999999988544222211 1 112222 22224578999999999764 58999999
Q ss_pred EeeCCeeCCCCCcEEEEecCC--eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeE
Q psy1095 99 WSKDGKPATPNARVTIREKED--LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRC 176 (325)
Q Consensus 99 W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v 176 (325)
|+++...+..+........+. ...+.+..-..++.-...|.+.| . ......+.+..++. ..........+
T Consensus 241 w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~--~~~~~~tav~~~~~-----~~~Ist~~~~l 312 (741)
T KOG3515|consen 241 WYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-L--LAASQITAVQVKPT-----AVPISTSDSGL 312 (741)
T ss_pred hccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-c--cccceeeecccccc-----cccccCccccc
Confidence 999887665431111111111 12244444444555577799987 1 11222233333211 11112223346
Q ss_pred ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256 (325)
Q Consensus 177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 256 (325)
..|+...+.|...+..++ +.+.|+++............. ...........+........|.|.|+|.+.+.......
T Consensus 313 s~g~s~r~~c~~sss~p~-~~i~w~~~~~~~~~~~~~~~~--t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~s 389 (741)
T KOG3515|consen 313 SSGRSARSSCVSSSSKPP-AHIAWYKDTKMPKGSQKASSK--TSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSS 389 (741)
T ss_pred ccccccccceeccCCCCc-cceeeeccCcccccccCcccC--CCcccceeeEEeeecccchhcCceEEcccccccccccc
Confidence 678999999977543332 789999854433211111000 00000111234555667788999999999987754444
Q ss_pred EEEEEEEeeCCeecC---------------------CCC---c-e-------EEEEe--------CCEEEEEEcCCCCCC
Q psy1095 257 SACLIVDVVKGKDLT---------------------SDG---R-L-------NIITV--------GGTSVLTIEDITGDD 296 (325)
Q Consensus 257 ~~~l~v~~~~~~~~~---------------------~~~---~-~-------~~~~~--------~~~~~l~i~~v~~~d 296 (325)
+..+.+..-+...+. .+. + + .+... .....+.+.++...|
T Consensus 390 ss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d 469 (741)
T KOG3515|consen 390 SSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSD 469 (741)
T ss_pred ccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeecc
Confidence 333333211111000 000 0 0 01111 111234466788999
Q ss_pred CeEEEEEEECCCeeEEeEEEEEEecccC
Q psy1095 297 SGKYQVHVSNQHGSDSCYASVAVEGRKI 324 (325)
Q Consensus 297 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 324 (325)
.|.|.|.|+|..|.....+.+.++..|-
T Consensus 470 ~g~y~~tatns~gg~~~~~~~~~~~sp~ 497 (741)
T KOG3515|consen 470 GGSYGLTATNSPGGAQAYLLLGVHTSPH 497 (741)
T ss_pred CCcceeeeccCCCceeeEEeeccccCCc
Confidence 9999999999999999988888876654
No 164
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=1.5e-11 Score=80.94 Aligned_cols=77 Identities=29% Similarity=0.530 Sum_probs=55.7
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCE---EeccCC-CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNR---LIKLDS-DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 254 (325)
|+.+.|.|.+.+.|. +.+.|++++. .+.... ......... ....|.|.++..+|+|.|.|.|.|..|..
T Consensus 1 G~~v~l~C~~~g~P~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 73 (81)
T cd05765 1 GETASFHCDVTGRPP--PEITWEKQVHGKENLIMRPNHVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGLL 73 (81)
T ss_pred CCcEEEEeeccccCC--CcEEEEecCCCCcceeecCCcccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCceE
Confidence 688999999999888 8999999732 111111 100000010 12589999999999999999999999999
Q ss_pred EeEEEEEE
Q psy1095 255 VTSACLIV 262 (325)
Q Consensus 255 ~~~~~l~v 262 (325)
...+.|.|
T Consensus 74 ~~~~~l~v 81 (81)
T cd05765 74 RANFPLSV 81 (81)
T ss_pred EEEEEEeC
Confidence 88888764
No 165
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.32 E-value=2.3e-11 Score=80.53 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=58.9
Q ss_pred CCcEEEEEEEEec--CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095 179 GDSVTFECQVQVV--PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256 (325)
Q Consensus 179 g~~v~l~C~~~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 256 (325)
|+.+.|.|.+.+. |+ +.+.|++++..+.......... .........+.|.|.+++.+|+|.|+|.|.|..+....
T Consensus 1 Ge~~~L~C~~~g~~~~~--~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 1 GETLVLNCTVLTELNEG--VDFQWTYPGKKRGRGKSMVTRQ-SLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred CCeEEEEEEEEeCCCcc--EEEEEecCCcccCCceEeeccc-ccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 7889999999998 55 8999998776543221100000 00111124578999999999999999999999999888
Q ss_pred EEEEEE
Q psy1095 257 SACLIV 262 (325)
Q Consensus 257 ~~~l~v 262 (325)
++.|.|
T Consensus 78 s~~v~v 83 (84)
T cd05742 78 STKVNI 83 (84)
T ss_pred EEEEEE
Confidence 888765
No 166
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.31 E-value=1.6e-11 Score=81.32 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=57.4
Q ss_pred CCeEEEEEEEEec--CCCeeEEeeCCeeCCCCCcE----E-EEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095 80 GDTVRFQCSVTGQ--PAPWTSWSKDGKPATPNARV----T-IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR 152 (325)
Q Consensus 80 g~~v~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~----~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 152 (325)
|+++.|.|.+.+. |.+.+.|++++..+...... . .........|.|.+++..|+|.|+|.+.|..+....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 78899999877654322110 0 011123467999999999999999999999888777777
Q ss_pred EEE
Q psy1095 153 LEI 155 (325)
Q Consensus 153 l~v 155 (325)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 665
No 167
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.31 E-value=1.9e-11 Score=79.11 Aligned_cols=65 Identities=26% Similarity=0.464 Sum_probs=48.5
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCC--CCCcEEEEecCCeEEEEEccCC----CCCCeEEEEEEEeCCeeEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPAT--PNARVTIREKEDLRFLEISEVT----LEDAGLYTIKVENNYGSVEA 149 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~ 149 (325)
+.|.|.+.|.|.|.++|+|++..+. ...++.+.. ...+|.|..+. .+|+|.|+|.+.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4799999999999999999998764 233444322 23468887654 24699999999999986543
No 168
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.31 E-value=1.6e-11 Score=79.45 Aligned_cols=65 Identities=25% Similarity=0.489 Sum_probs=48.0
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCC--CcEEEEecCCeEEEEEccCCC----CCCeEEEEEEEeCCeeEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPN--ARVTIREKEDLRFLEISEVTL----EDAGLYTIKVENNYGSVEA 149 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~ 149 (325)
+.|.|.+.|.|.|.++|+|++.++... .+..+... ..+|.|..+.. .|.|.|+|.+.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~--~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPN--TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCC--CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 579999999999999999999987432 23333322 24577766654 4789999999999986543
No 169
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.31 E-value=7.3e-11 Score=78.51 Aligned_cols=79 Identities=35% Similarity=0.613 Sum_probs=63.0
Q ss_pred EecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
.+..|+.+.|.|.+.+.|.+.+.|++++..+......... .......|.|.++..+|.|.|.|.+.|..|....++.|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 4668999999999999999999999999887654433322 223345799999999999999999999988777766665
No 170
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.30 E-value=5.8e-11 Score=79.88 Aligned_cols=82 Identities=23% Similarity=0.439 Sum_probs=58.0
Q ss_pred CeeeecCcCeeEe---cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC-CCCC
Q psy1095 165 PKVLNGLENLRCC---DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY-PEDE 240 (325)
Q Consensus 165 p~~~~~~~~~~v~---~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~ 240 (325)
|.|...+....+. .|+.+.|.|.+.|.|. +.+.|++++..+......... ... ..|.|.++. .+|+
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~--p~i~W~k~~~~l~~~~~~~~~-~~~-------~~L~i~~~~~~~d~ 71 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPP--PTYRWLMNGTEIDDEPDSRYS-LVG-------GNLVISNPSKAKDA 71 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCC--CEEEEEECCEECCCCCCCCEE-EEC-------CEEEEecCCccCCC
Confidence 3444444444333 3467999999999988 899999999887543332222 122 378898876 4899
Q ss_pred eEEEEEEEeCCCcEEe
Q psy1095 241 GEFTCRVANELGEVVT 256 (325)
Q Consensus 241 G~Y~C~~~~~~~~~~~ 256 (325)
|.|+|.|.|..|...+
T Consensus 72 G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 72 GRYQCLASNIVGTVLS 87 (91)
T ss_pred EEEEEEEEcCCCEEEe
Confidence 9999999999997654
No 171
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.30 E-value=8.9e-11 Score=78.88 Aligned_cols=88 Identities=20% Similarity=0.345 Sum_probs=68.2
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCC--CcEEEEec----CCeEEEEEccCCCCC-CeEE
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPN--ARVTIREK----EDLRFLEISEVTLED-AGLY 136 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y 136 (325)
||.| .......+.+|+++.|.|.+.+.|.| .|.|.+.+..+... .++.+... +....|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5666 45556678899999999999887776 57898887776543 46666543 356789999998766 7999
Q ss_pred EEEEEeCCeeEEEEEEE
Q psy1095 137 TIKVENNYGSVEATARL 153 (325)
Q Consensus 137 ~C~~~~~~~~~~~~~~l 153 (325)
.|.+.|..|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999987766654
No 172
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.30 E-value=3e-11 Score=80.22 Aligned_cols=79 Identities=30% Similarity=0.391 Sum_probs=62.1
Q ss_pred EecCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095 69 YAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV 147 (325)
Q Consensus 69 ~~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 147 (325)
...|....+.+|++++|.|.+.+ .|.+.+.|++++..+.... . .....|.|.+++.+|+|.|.|.+.|..|..
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M--DFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c--ccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 34566778899999999999864 6888999999987654321 1 122469999999999999999999998877
Q ss_pred EEEEEE
Q psy1095 148 EATARL 153 (325)
Q Consensus 148 ~~~~~l 153 (325)
.+.+.|
T Consensus 79 ~~~~~l 84 (85)
T cd05754 79 EATATL 84 (85)
T ss_pred eEEEEE
Confidence 766554
No 173
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.30 E-value=3.2e-11 Score=78.19 Aligned_cols=69 Identities=29% Similarity=0.500 Sum_probs=53.4
Q ss_pred EEEEEEEEe-cCCCeeEEeeCCeeCCCC----CcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095 83 VRFQCSVTG-QPAPWTSWSKDGKPATPN----ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151 (325)
Q Consensus 83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 151 (325)
+.|.|.+.+ .|.+.+.|++++..+... .++..........|.|.++...|+|.|+|.+.|..|....++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 479999864 688899999999888532 223333334456799999999999999999999988766554
No 174
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.29 E-value=2.4e-11 Score=78.88 Aligned_cols=67 Identities=28% Similarity=0.588 Sum_probs=50.1
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCC----CCCeEEEEEEEeCCCcEEe
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP----EDEGEFTCRVANELGEVVT 256 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~ 256 (325)
+.|.|.+.|.|+ +.+.|++++..+............. .+.|.|.++.. +|+|.|.|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~--P~v~W~k~g~~l~~~~~~~~~~~~~------~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPP--PTFSWTRNGTHFDPEKDPRVTMKPD------SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCC--CeEEEEECCeECCCCCCCCEEEeCC------CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 479999999998 8999999999886443333221121 24788887753 7899999999999997554
No 175
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.28 E-value=4.8e-11 Score=79.97 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=60.2
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCC----cEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC-ee
Q psy1095 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA----RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY-GS 146 (325)
Q Consensus 72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~ 146 (325)
|..+.+.+|+++.|.|.+.+ |.+.+.|++++..+.... ++... . ..|.|.+++.+|+|.|.|.+.+.. +.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 77 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--E--DGLLIRSVSPADAGVYTCQSVEHGFKQ 77 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--C--CCEEEccCCHHHCEEEEEEEecCccce
Confidence 45567889999999999876 878999999988765432 22222 1 239999999999999999998654 34
Q ss_pred EEEEEEEEEE
Q psy1095 147 VEATARLEIM 156 (325)
Q Consensus 147 ~~~~~~l~v~ 156 (325)
...+..|.|.
T Consensus 78 ~~~~~~l~V~ 87 (89)
T cd04979 78 TLATYSLNVL 87 (89)
T ss_pred eEeEEEEEEe
Confidence 5566666664
No 176
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.27 E-value=4.7e-11 Score=77.28 Aligned_cols=67 Identities=28% Similarity=0.549 Sum_probs=49.2
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCC----CCCeEEEEEEEeCCCcEEe
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP----EDEGEFTCRVANELGEVVT 256 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~ 256 (325)
+.|.|.+.|.|. |++.|++++..+.............+ +.|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~--P~i~W~k~g~~l~~~~~~~~~~~~~~------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPP--PSFSWTRNGTHFDIDKDPKVTMKPNT------GTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCC--CeEEEEECCeECCCcCCCCEEEeCCC------ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 479999999998 89999999988754433332222222 4677876664 3789999999999997655
No 177
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.26 E-value=1e-10 Score=77.16 Aligned_cols=80 Identities=25% Similarity=0.393 Sum_probs=54.7
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC--cEEe
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG--EVVT 256 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~ 256 (325)
|+.++|.|.+.+.|. +.+.|++++................ .....+.|.|.+++.+|+|.|.|.|.|..+ ....
T Consensus 1 Ge~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~ 76 (84)
T cd05861 1 GETITVNCIVQGNEV--VDFSWTYPGKDIGKGIPEVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFK 76 (84)
T ss_pred CCcEEEEEEEECCCc--cEEEEEECCccCCCCceEEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeE
Confidence 789999999999877 8999998776432111000000011 112357899999999999999999998776 4555
Q ss_pred EEEEEE
Q psy1095 257 SACLIV 262 (325)
Q Consensus 257 ~~~l~v 262 (325)
++.|+|
T Consensus 77 sv~i~V 82 (84)
T cd05861 77 KVNITV 82 (84)
T ss_pred EEEEEE
Confidence 555555
No 178
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.25 E-value=8.3e-11 Score=76.24 Aligned_cols=72 Identities=24% Similarity=0.491 Sum_probs=52.3
Q ss_pred EEEEEEEEec-CCCCCeeEEeeCCEEeccCCCC--ceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 182 VTFECQVQVV-PPNDHDISWFRNNRLIKLDSDM--KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 182 v~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
+.|.|.+.+. |. +.+.|++++..+...... ........ ..+.|.|.++..+|+|.|+|.+.|..|....++
T Consensus 1 ~~L~C~a~~~~p~--~~~~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPS--LRFKWFKNGKEIGAKNKPDNKIKIRKKK----KSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCC--CceEEEECCcccccCCCCCceEEEEeCC----cEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 4799998753 44 799999999887643221 11111111 346899999999999999999999999877665
Q ss_pred E
Q psy1095 259 C 259 (325)
Q Consensus 259 ~ 259 (325)
.
T Consensus 75 ~ 75 (76)
T cd05895 75 N 75 (76)
T ss_pred e
Confidence 4
No 179
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.25 E-value=4.1e-11 Score=78.78 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=53.6
Q ss_pred ecCCceEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 70 AVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 70 ~~~~~~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
+.+....+.+|++|+|.|.+.+ .+.+.+.|+|++..+... .....|.|.+++.+|+|.|+|.+.+..+
T Consensus 4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCc
Confidence 3444556899999999999854 566789999999866421 1234699999999999999999998776
No 180
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.24 E-value=5.7e-11 Score=77.62 Aligned_cols=69 Identities=29% Similarity=0.448 Sum_probs=50.5
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCC--------CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEE
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPAT--------PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV-EATARL 153 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l 153 (325)
|+|.|.+.|.|.|.+.|++++.... ...++.... ..+|.|.++..+|+|.|.|.+.|..|.. ...+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS---NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec---CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 5799999999999999999643211 122333322 2469999999999999999999998865 444444
Q ss_pred E
Q psy1095 154 E 154 (325)
Q Consensus 154 ~ 154 (325)
.
T Consensus 78 ~ 78 (79)
T cd05734 78 T 78 (79)
T ss_pred e
Confidence 3
No 181
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.24 E-value=8.6e-11 Score=76.04 Aligned_cols=68 Identities=24% Similarity=0.492 Sum_probs=49.1
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCC----CCCCeEEEEEEEeCCCcEEeE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY----PEDEGEFTCRVANELGEVVTS 257 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~~ 257 (325)
+.|.|.+.|.|. |.+.|++++..+............. ...|.|..+. .+|+|.|.|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~--P~v~W~k~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPV--PTFQWTRNGKFFNVAKDPRVSMRRR------SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCC--CEEEEEECCEEccCcCCCcEEEeCC------CceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 469999999998 9999999998765333323221112 2478887764 246999999999999976543
No 182
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.24 E-value=1.7e-10 Score=77.58 Aligned_cols=73 Identities=19% Similarity=0.340 Sum_probs=52.2
Q ss_pred cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCC------CceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD------MKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 245 (325)
....+.+|+.+.|.|.+.+.|. +.+.|++++..+..... .+...... ......|.|.+++.+|+|.|+|
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~--~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~nV~~~D~G~YtC 79 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDN--SSLQWSNTAQQTLYFGEKRALRDNRIQLVKS---TPTELIISISNVQLSDEGEYTC 79 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCC--CeEEEeccCccEEEeCCeEEEeCCeEEEEeC---CCceEEEEECCCCcccCEEEEE
Confidence 3567889999999999999887 88999998764321111 01110000 0124689999999999999999
Q ss_pred EEEe
Q psy1095 246 RVAN 249 (325)
Q Consensus 246 ~~~~ 249 (325)
.+..
T Consensus 80 ~~~t 83 (95)
T cd05882 80 SIFT 83 (95)
T ss_pred EEEe
Confidence 9987
No 183
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.23 E-value=1.4e-10 Score=76.72 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=59.1
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
|+.+.|.|.+.+.+.....+.|..++.......................+.|.|.+++.+|+|.|+|.|.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78899999998876544788998877644211100000000011122457999999999999999999999998888888
Q ss_pred EEEEE
Q psy1095 259 CLIVD 263 (325)
Q Consensus 259 ~l~v~ 263 (325)
.|.|+
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88774
No 184
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.23 E-value=9.8e-11 Score=76.51 Aligned_cols=71 Identities=28% Similarity=0.458 Sum_probs=49.5
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccC------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE-
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLD------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV- 254 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~- 254 (325)
++|.|.+.|.|. |.+.|++++...... ...+.... ....|.|.++..+|+|.|.|.|.|..|..
T Consensus 1 v~l~C~~~G~P~--P~v~W~~~~~~~~~~~~~~~~~~~r~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 71 (79)
T cd05734 1 VTLNCSAEGYPP--PTIVWKHSKGRGHPQHTHTCCLAGRIQLL-------SNGSLLIKHVLEEDSGYYLCKVSNDVGADA 71 (79)
T ss_pred CEeEeeCeEeCC--CEEEEEECCCccccccccccccCCCEEEe-------cCCeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence 579999999998 899999964322111 01111111 12589999999999999999999999876
Q ss_pred EeEEEEE
Q psy1095 255 VTSACLI 261 (325)
Q Consensus 255 ~~~~~l~ 261 (325)
...+.|.
T Consensus 72 s~~~~l~ 78 (79)
T cd05734 72 SKSMVLT 78 (79)
T ss_pred ceEEEEe
Confidence 4444443
No 185
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.23 E-value=2.2e-10 Score=76.20 Aligned_cols=80 Identities=23% Similarity=0.421 Sum_probs=61.1
Q ss_pred eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 254 (325)
.+..|+.+.|.|.+.+.|. +.+.|++++..+......... .. ......|.|.++..+|.|.|.|.+.|..|..
T Consensus 5 ~~~~G~~~~l~C~~~~~p~--~~v~W~k~~~~~~~~~~~~~~-~~----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPR--PTITWLKDGKPFKKEHRIGGY-KV----RKKKWTLILESVVPSDSGKYTCIVENKYGSI 77 (85)
T ss_pred EecCCCcEEEEEEcCCCCC--CeEEEEECCEECcccCceeEE-Ec----cCcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence 4567999999999998887 889999998877543322111 00 1133579999999999999999999999988
Q ss_pred EeEEEEE
Q psy1095 255 VTSACLI 261 (325)
Q Consensus 255 ~~~~~l~ 261 (325)
..++.|.
T Consensus 78 ~~~~~l~ 84 (85)
T cd05729 78 NHTYKVD 84 (85)
T ss_pred EEEEEEe
Confidence 7776665
No 186
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.22 E-value=1.1e-10 Score=77.52 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=58.8
Q ss_pred cCeeEecCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095 172 ENLRCCDGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 250 (325)
....+.+|+.++|.|.+.+ .|. +.+.|++++..+.... . . ..+.|.|.+++.+|+|.|.|.+.|.
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~--~~i~W~~~~~~~~~~~----~--~------~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPA--YTLVWTRVGGGLPSRA----M--D------FNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCC--cEEEEEECCCcCCCcc----c--c------cCCEEEECCCCHHHCEEEEEEEecc
Confidence 4557889999999999975 444 8999999886643211 0 1 1248999999999999999999999
Q ss_pred CCcEEeEEEE
Q psy1095 251 LGEVVTSACL 260 (325)
Q Consensus 251 ~~~~~~~~~l 260 (325)
.|.....+.|
T Consensus 75 ~g~~~~~~~l 84 (85)
T cd05754 75 LDTDEATATL 84 (85)
T ss_pred CCeEeEEEEE
Confidence 9988877665
No 187
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.22 E-value=6.1e-10 Score=73.90 Aligned_cols=83 Identities=33% Similarity=0.550 Sum_probs=67.3
Q ss_pred CceEecCCCeEEEEEEEEecCCCeeEEeeC-CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095 73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKD-GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151 (325)
Q Consensus 73 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 151 (325)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++..|+|.|.|.+.+..+.....+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 455678999999999998888889999998 8887756666666655567899999999999999999997776665555
Q ss_pred EEEE
Q psy1095 152 RLEI 155 (325)
Q Consensus 152 ~l~v 155 (325)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5554
No 188
>smart00409 IG Immunoglobulin.
Probab=99.22 E-value=6.1e-10 Score=73.90 Aligned_cols=83 Identities=33% Similarity=0.550 Sum_probs=67.3
Q ss_pred CceEecCCCeEEEEEEEEecCCCeeEEeeC-CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095 73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKD-GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151 (325)
Q Consensus 73 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 151 (325)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++..|+|.|.|.+.+..+.....+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 455678999999999998888889999998 8887756666666655567899999999999999999997776665555
Q ss_pred EEEE
Q psy1095 152 RLEI 155 (325)
Q Consensus 152 ~l~v 155 (325)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5554
No 189
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.22 E-value=1e-10 Score=78.20 Aligned_cols=72 Identities=25% Similarity=0.228 Sum_probs=56.1
Q ss_pred eEecCCCeEEEEEEEEe-----cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE
Q psy1095 75 KICDLGDTVRFQCSVTG-----QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA 149 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 149 (325)
..+.+|+++.|.|...+ +|.|.+.|||++.++....+... ....|.|.+++.+|+|.|+|.+.+..+....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 45788999999998643 25789999999999876544332 2246999999999999999999987765443
Q ss_pred E
Q psy1095 150 T 150 (325)
Q Consensus 150 ~ 150 (325)
.
T Consensus 81 ~ 81 (92)
T cd05757 81 N 81 (92)
T ss_pred E
Confidence 3
No 190
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.21 E-value=2.3e-10 Score=75.16 Aligned_cols=68 Identities=15% Similarity=0.258 Sum_probs=53.3
Q ss_pred cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
....+..|+++.|.|.+.+ +. +.+.|++++..+..+.. +.. ..++ .|.|.+++.+|+|.|+|.+.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~--~~i~W~~ng~~i~~~~~-r~~-~~~~-------~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NL--ARVVWKFDGKVLTPESA-KYL-LYRD-------GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CC--CeEEEEECCEECCCCCc-eEE-EECC-------cEEEeCCCHHHCEEEEEEEEecc
Confidence 4567889999999999753 44 78999999999876532 222 2333 69999999999999999998864
No 191
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.18 E-value=1.3e-09 Score=72.72 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=68.8
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCe-eEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHD-ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
...+.+|+.+.|.|.+.++|+ +. +.|.+++..+........ ........++.+.|.|..+..+|+|.|+|.|.|..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~--p~~~~W~~~~~~l~~~~~~~~-~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPK--PEHQQWIYMNRTLTNTSDHYV-KSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCC--CeeeEEEcCCcccCcccccee-EEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 456889999999999999999 76 999998876644333211 11121234577999999999999999999999999
Q ss_pred CcEEeEEEEEE
Q psy1095 252 GEVVTSACLIV 262 (325)
Q Consensus 252 ~~~~~~~~l~v 262 (325)
.....++.|.|
T Consensus 89 ~~~s~tF~l~v 99 (101)
T cd05860 89 ASASVTFNVYV 99 (101)
T ss_pred CeEEEEEEEEE
Confidence 99988888876
No 192
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.17 E-value=2.7e-10 Score=76.15 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=59.4
Q ss_pred eeEecCCcEEEEEEEEecCC---CCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095 174 LRCCDGDSVTFECQVQVVPP---NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250 (325)
Q Consensus 174 ~~v~~g~~v~l~C~~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 250 (325)
..+.+|+.+.|.|...+.+. +.+.+.|+|++.++...... . . . ...|.|.++..+|+|.|+|.+.|.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~--~-~------~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-F--V-K------GSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-E--e-c------CCEEEEeeCChhhCEEEEEEEEec
Confidence 45678999999998754321 23799999999988754321 1 1 2 258999999999999999999999
Q ss_pred CCcEEeEEEEEE
Q psy1095 251 LGEVVTSACLIV 262 (325)
Q Consensus 251 ~~~~~~~~~l~v 262 (325)
.+.....+...+
T Consensus 75 ~~~~~~~~t~t~ 86 (92)
T cd05757 75 HNGKQYNVTRTI 86 (92)
T ss_pred CCCEEEEEEEEE
Confidence 887776655554
No 193
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.15 E-value=6.9e-10 Score=75.33 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=57.8
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC--------CCCCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA--------TPNARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVEN 142 (325)
Q Consensus 72 ~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~ 142 (325)
+....+.+|++++|.|.+.+.+.+.+.|++.+..+ ....++.+.. .+....|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 34567899999999999988888899998632211 1224555432 23456799999999999999999986
Q ss_pred CCeeEEEEEEEE
Q psy1095 143 NYGSVEATARLE 154 (325)
Q Consensus 143 ~~~~~~~~~~l~ 154 (325)
... ..+.+.|.
T Consensus 84 ~~~-~~~~~~~~ 94 (95)
T cd05717 84 MPV-QTAKATVT 94 (95)
T ss_pred CCC-ceEEEEEE
Confidence 543 34455544
No 194
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.14 E-value=5.7e-10 Score=75.35 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=56.3
Q ss_pred cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEec--------cCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--------LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 243 (325)
....+.+|+.+.|.|.+.+.|. +.+.|++.+..+. ...++.. ... ......|.|.+++.+|+|.|
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~--~~v~W~~~~~~~l~~~~~~~~~~~r~~~--~~~---~~~~~sL~I~~v~~~DsG~Y 77 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDN--TSLQWSNPAQQTLYFDDKKALRDNRIEL--VRA---SWHELSISISDVSLSDEGQY 77 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCc--eEEEEeCCCCeEEEEcCcccccCCCEEE--EEC---CCCcEEEEECcCCcccCEEE
Confidence 3567889999999999998887 8899987433211 1112111 011 01336899999999999999
Q ss_pred EEEEEeCCCcEEeEEEEEE
Q psy1095 244 TCRVANELGEVVTSACLIV 262 (325)
Q Consensus 244 ~C~~~~~~~~~~~~~~l~v 262 (325)
.|.+.+..+ ....+.|+|
T Consensus 78 ~C~~~t~~~-~~~~~~l~v 95 (95)
T cd07701 78 TCSLFTMPV-KTSKAYLTV 95 (95)
T ss_pred EEEeEeecC-ccEEEEEEC
Confidence 999988433 355555543
No 195
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.14 E-value=5.5e-10 Score=73.27 Aligned_cols=78 Identities=32% Similarity=0.637 Sum_probs=58.2
Q ss_pred CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
|.+...+ ..+.+|+++.|.|.+.+.|.+.+.|++++..+.... + .+.+..+..+|.|.|+|.+.+..+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~---~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------N---GLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------S---EEEESSEEGGGTEEEEEEEEETTE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------e---eeeeeeeccccCEEEEEEEEeCCC
Confidence 5565554 558899999999999988889999999887665221 1 167788899999999999998654
Q ss_pred -eEEEEEEEEE
Q psy1095 146 -SVEATARLEI 155 (325)
Q Consensus 146 -~~~~~~~l~v 155 (325)
.....+.|.|
T Consensus 70 ~~~s~~~~v~V 80 (80)
T PF13895_consen 70 SNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEEE
T ss_pred CeEeeeEEeeC
Confidence 3445555544
No 196
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.13 E-value=5.8e-10 Score=74.68 Aligned_cols=81 Identities=21% Similarity=0.385 Sum_probs=56.6
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC-
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL- 251 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~- 251 (325)
...+.+|+.+.|.|.+.+ |. +.+.|++++..+.............. ..|.|.+++.+|+|.|.|.+.+..
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~--~~i~W~k~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NL--ASVVWLFQGGPLQRKEEPEERLLVTE------DGLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CC--ceEEEEECCcccccccCcCceEEEcC------CCEEEccCCHHHCEEEEEEEecCcc
Confidence 456788999999999876 55 78999999887654321011111111 359999999999999999998754
Q ss_pred CcEEeEEEEEE
Q psy1095 252 GEVVTSACLIV 262 (325)
Q Consensus 252 ~~~~~~~~l~v 262 (325)
+....+..|.|
T Consensus 76 ~~~~~~~~l~V 86 (89)
T cd04979 76 KQTLATYSLNV 86 (89)
T ss_pred ceeEeEEEEEE
Confidence 34444555555
No 197
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.13 E-value=3.4e-10 Score=74.39 Aligned_cols=68 Identities=16% Similarity=0.333 Sum_probs=52.6
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
...+.+|+.++|.|.+.+..+. ..+.|++++..+.... ....|.|.+++.+|+|.|+|.+.+..+
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~-~~~~w~k~g~~~~~~~--------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPV-YKVTYYRDGKAKKYSH--------------SNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcc-eEEEEEECCeEccccC--------------CCceEEECccCHHHCEEEEEEEEeCCc
Confidence 4468899999999998543332 6899999997664211 124799999999999999999999887
Q ss_pred cEE
Q psy1095 253 EVV 255 (325)
Q Consensus 253 ~~~ 255 (325)
...
T Consensus 73 ~~~ 75 (83)
T cd05753 73 DYS 75 (83)
T ss_pred eec
Confidence 543
No 198
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.12 E-value=1.9e-10 Score=76.64 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=54.3
Q ss_pred CceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeC--CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 73 HNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPA--TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 73 ~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
....+.+|+.+.|.|.. .+.|.+.+.|++++.++ ....+..+.. ..+.|.|.+++..|+|.|+|.++|...
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEeccc
Confidence 34568899999999986 56899999999998754 2223333332 224699999999999999999988653
No 199
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.11 E-value=5.7e-10 Score=74.56 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=51.9
Q ss_pred EecCCCeEEEEEEEEecCCCeeEEeeCCeeC-C-------------CCCcEEEEe---cCCeEEEEEccCCCCCCeEEEE
Q psy1095 76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA-T-------------PNARVTIRE---KEDLRFLEISEVTLEDAGLYTI 138 (325)
Q Consensus 76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~-~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C 138 (325)
.+.+|++|+|+|.+.+.+.+.+.|++++... . ..+++.... ..+...|.|.+++.+|+|.|+|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4678999999999988889999999765321 1 112222222 3345679999999999999999
Q ss_pred EEEeCCe
Q psy1095 139 KVENNYG 145 (325)
Q Consensus 139 ~~~~~~~ 145 (325)
.+.+..+
T Consensus 83 ~v~~~~~ 89 (94)
T cd07690 83 EVEDKKE 89 (94)
T ss_pred EECCccc
Confidence 9977654
No 200
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.10 E-value=1.5e-09 Score=72.57 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=55.9
Q ss_pred eEecCCCeEEEEEEEEecCCCeeEEeeCCe--eC----CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE-eCCeeE
Q psy1095 75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGK--PA----TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE-NNYGSV 147 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~--~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~ 147 (325)
+.+.+|+++.|.|.. +.|.|.+.||+++. .. ....++... + ..|.|.+++.+|+|.|+|.+. +..+..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--E--RGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe--c--CeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 457889999999996 47889999998432 11 112233322 1 349999999999999999997 455556
Q ss_pred EEEEEEEEEC
Q psy1095 148 EATARLEIMD 157 (325)
Q Consensus 148 ~~~~~l~v~~ 157 (325)
...+.|+|..
T Consensus 81 ~~~~~l~v~~ 90 (91)
T cd05871 81 LAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEec
Confidence 6677777753
No 201
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.10 E-value=3e-09 Score=71.03 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=55.6
Q ss_pred CceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC--------CCCCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 73 HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA--------TPNARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 73 ~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
.++++.+|+++.|.|.+.+.....+.|++.+..+ ....|+.... .+...+|.|.+++.+|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4577899999999999988766678888765332 2455777665 455678999999999999999999653
No 202
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.09 E-value=5.8e-10 Score=69.27 Aligned_cols=62 Identities=37% Similarity=0.629 Sum_probs=49.6
Q ss_pred CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
+|++++|.|.+.+.+.+.+.|++++..+.. ..... .....|.|.+++..|+|.|+|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 588999999988888899999999988762 22211 233479999999999999999998754
No 203
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.07 E-value=7e-10 Score=69.27 Aligned_cols=61 Identities=36% Similarity=0.577 Sum_probs=46.9
Q ss_pred CCeEEEEEEE-EecCCCeeEEeeCCeeCCCCCcEEEEecCCeE--EEEEccCCCCCCeEEEEEE
Q psy1095 80 GDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIREKEDLR--FLEISEVTLEDAGLYTIKV 140 (325)
Q Consensus 80 g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~ 140 (325)
|++++|.|.+ .+.+.+.+.|++++.................. .|.|.+++.+|+|.|+|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 66778899999998876554433333333221 3999999999999999986
No 204
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.06 E-value=2.1e-09 Score=71.13 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=55.7
Q ss_pred CCeEEEEEEEEecC--CCeeEEeeCCeeCCCC---Cc---EEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095 80 GDTVRFQCSVTGQP--APWTSWSKDGKPATPN---AR---VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151 (325)
Q Consensus 80 g~~v~l~C~~~~~p--~~~v~W~~~~~~~~~~---~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 151 (325)
|+++.|.|.+.+.+ ...+.|..++...... .. ..........+|.|.+++..|+|.|+|.+.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999998755 4577998877543211 11 0001122346799999999999999999999888877778
Q ss_pred EEEEE
Q psy1095 152 RLEIM 156 (325)
Q Consensus 152 ~l~v~ 156 (325)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77775
No 205
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.04 E-value=1.7e-09 Score=72.20 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=51.9
Q ss_pred eEecCCCeEEEEEEE-E----ecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 75 KICDLGDTVRFQCSV-T----GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~-~----~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
..+.+|.+..|.|.- . ..+.+.++|||++.++...........+ ...|.|.++..+|+|.|+|.+.+..+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~-~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG-STYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC-CCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 457789999999972 2 2356799999999998754422222122 23599999999999999999988654
No 206
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.03 E-value=6e-10 Score=74.07 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=55.5
Q ss_pred CCceEecCCCeEEEEEE-EEecCCCeeEEeeCCee-CCCCCcEEEEecCCeEEEEEccCCCCCCe-EEEEEEEeCC
Q psy1095 72 PHNKICDLGDTVRFQCS-VTGQPAPWTSWSKDGKP-ATPNARVTIREKEDLRFLEISEVTLEDAG-LYTIKVENNY 144 (325)
Q Consensus 72 ~~~~~v~~g~~v~l~C~-~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~ 144 (325)
.....+.+|+.+.|.|. ..|.|.|.+.|++++.. +....+..+..+ +.|.|.+++..|.| .|.|.+.+..
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~---GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN---GNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC---ceEEEEEEehhhCCCCeEEEEEccc
Confidence 45677999999999997 58899999999987644 333445544433 46999999999999 8999998765
No 207
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.03 E-value=9e-10 Score=73.40 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=53.3
Q ss_pred CeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 173 NLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
...+.+|+.+.|.|... +.|. +.+.|++++..+......+...... .+.|.|.+++.+|+|.|.|.|+|..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~~d~r~~~~~~------~G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIPEDGRRFVSQT------NGNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCC--CEEEEEECCcccccccCCCeEEeCC------CCcEEEeecCHhhCceeEEEEEecc
Confidence 45688899999999764 5555 8999999986542211112222221 2489999999999999999999976
Q ss_pred CcE
Q psy1095 252 GEV 254 (325)
Q Consensus 252 ~~~ 254 (325)
...
T Consensus 84 ~~~ 86 (96)
T cd05727 84 STK 86 (96)
T ss_pred cCC
Confidence 543
No 208
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.03 E-value=2.7e-09 Score=69.53 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=58.7
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE-eCCeeEEEEEE
Q psy1095 74 NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE-NNYGSVEATAR 152 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~ 152 (325)
..++.+|+++.|.|...+. .+.+.|++++..+....++.....+ |.|..++..|+|.|.|.+. +.+...-.+..
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~ 79 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEEEGFQQLVASYS 79 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEecCCCeEEEEEEE
Confidence 5678899999999998764 5689999999998766666554443 8899999999999999986 33333344555
Q ss_pred EEEE
Q psy1095 153 LEIM 156 (325)
Q Consensus 153 l~v~ 156 (325)
|.|.
T Consensus 80 l~v~ 83 (85)
T cd05872 80 LNVV 83 (85)
T ss_pred EEEe
Confidence 5543
No 209
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.02 E-value=3.7e-09 Score=69.24 Aligned_cols=70 Identities=39% Similarity=0.712 Sum_probs=54.0
Q ss_pred eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC-
Q psy1095 174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG- 252 (325)
Q Consensus 174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~- 252 (325)
..+.+|+.+.|.|.+.+.|. ..+.|++++..+.... + .+.+.++..+|.|.|+|.+.+..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~---------~-------~~~~~~~~~~~~g~y~C~~~~~~~~ 70 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPP--PQVQWYKNGSPINSSQ---------N-------GLFIPNVSPEDSGNYTCRASNGSGS 70 (80)
T ss_dssp SEEETTSEEEEEEEEESSSS--SEEEEEETTEEEEEES---------S-------EEEESSEEGGGTEEEEEEEEETTEE
T ss_pred eEEeCCCcEEEEEEEEcccc--eeeeeeeeeeeeeeee---------e-------eeeeeeeccccCEEEEEEEEeCCCC
Confidence 56889999999999997777 8999999987776221 1 277788999999999999999654
Q ss_pred cEEeEEEEE
Q psy1095 253 EVVTSACLI 261 (325)
Q Consensus 253 ~~~~~~~l~ 261 (325)
..+..+.|.
T Consensus 71 ~~s~~~~v~ 79 (80)
T PF13895_consen 71 NTSTSVNVT 79 (80)
T ss_dssp EEEEEEEEE
T ss_pred eEeeeEEee
Confidence 333444444
No 210
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.01 E-value=2.8e-09 Score=66.13 Aligned_cols=63 Identities=30% Similarity=0.605 Sum_probs=48.8
Q ss_pred cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
+|+.+.|.|.+.+.+. +.+.|++++..+. . .. .... ....|.|.++...|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~-~-~~--~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPV--PNITWLKDGKPLP-E-SN--RLSA------SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCC--CeEEEEECCEECC-C-CC--EEec------CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 4789999999877777 7899999988776 1 11 1111 225899999999999999999988754
No 211
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.01 E-value=1.2e-08 Score=68.02 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=64.1
Q ss_pred ceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCCcEEEEecC-----CeEEEEEccCCCCCCeEEEEEEEeCCeeE
Q psy1095 74 NKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKE-----DLRFLEISEVTLEDAGLYTIKVENNYGSV 147 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 147 (325)
...+.+|+++.|.|.+.++|.|. +.|.+++..+...........+ -...|.+.++..+|.|.|+|.+.|.....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45689999999999999999997 9999988766433221122211 13569999999999999999999998877
Q ss_pred EEEEEEEEE
Q psy1095 148 EATARLEIM 156 (325)
Q Consensus 148 ~~~~~l~v~ 156 (325)
...+.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 777777653
No 212
>PHA03376 BARF1; Provisional
Probab=99.00 E-value=8.1e-09 Score=75.47 Aligned_cols=123 Identities=19% Similarity=0.269 Sum_probs=74.4
Q ss_pred ceEecCCCeEEEEEEEEe---cCCCeeEEeeCCe----eC-------------CCCCcEEEEecCCeEEEEEccCCCCCC
Q psy1095 74 NKICDLGDTVRFQCSVTG---QPAPWTSWSKDGK----PA-------------TPNARVTIREKEDLRFLEISEVTLEDA 133 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~~---~p~~~v~W~~~~~----~~-------------~~~~~~~~~~~~~~~~l~i~~~~~~d~ 133 (325)
++.+..|+.+.|+|.... .+.-.|.|+|.+. -+ ....++.+..+.++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 455778999999999752 2445789999431 10 011233333445778899999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC
Q psy1095 134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN 204 (325)
Q Consensus 134 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~ 204 (325)
|.|+|.++.......+.-.|.+..+ ..............-+...+.|.+.|+|. |.+.|..+.
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~------~~Lsv~a~~~dFp~~~~~~i~C~sggfP~--P~~~Wle~~ 162 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKP------LTLSVHSERSQFPDFSVLTVTCTVNAFPH--PHVQWLMPE 162 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeec------ceEEEEeccccCCCCCeeEEEEecCCcCC--chheecccc
Confidence 9999999754432222223332221 01111110011112456789999777887 899998654
No 213
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.98 E-value=6.8e-09 Score=69.38 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=53.4
Q ss_pred eeEecCCcEEEEEEEEecCCCCCeeEEeeCCE--EeccC--CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE-
Q psy1095 174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNR--LIKLD--SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA- 248 (325)
Q Consensus 174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~- 248 (325)
+.+.+|+.+.|.|.. +.|. +.+.|++.+. ..... ...... . ....|.|.+++.+|+|.|.|.+.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~--p~v~Wykq~~g~~~~~~~~~~~r~~--~------~~~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQ--ASVKWLFQRGGDQRKEEVKTEERLI--H------TERGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred EEEecCCcEEEEEEC-CCCC--ceEEEEEECCCCCccccccccccEE--E------ecCeEEEeeCChhHCEEEEEEEEc
Confidence 356789999999986 3555 8999998432 21110 011111 1 22469999999999999999998
Q ss_pred eCCCcEEeEEEEEEE
Q psy1095 249 NELGEVVTSACLIVD 263 (325)
Q Consensus 249 ~~~~~~~~~~~l~v~ 263 (325)
+..+.....+.|.|+
T Consensus 75 ~~~~~~~~~~~l~v~ 89 (91)
T cd05871 75 HSFSQTLAKYTLHVI 89 (91)
T ss_pred cCCeEEEEEEEEEEe
Confidence 466666667777764
No 214
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.97 E-value=3.9e-09 Score=70.54 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=51.7
Q ss_pred eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCce------------EEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP------------EVQVDSKENLVIARLKIPHVYPEDEGE 242 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~ 242 (325)
.+.+|+.|+|.|.+.+.+. +.+.|++++.....+..... ..... ........|.|.+++.+|+|.
T Consensus 3 ~~~~G~~VtL~C~~s~~~~--~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 3 LGKKGDTAELPCTASQKKS--IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred EeeCCCCEEEEEEeCCCCC--cEEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEE
Confidence 4678999999999987776 88999976643211111110 00010 001134679999999999999
Q ss_pred EEEEEEeCCCcE
Q psy1095 243 FTCRVANELGEV 254 (325)
Q Consensus 243 Y~C~~~~~~~~~ 254 (325)
|.|.+.|..++.
T Consensus 80 Y~C~v~~~~~~~ 91 (94)
T cd07690 80 YICEVEDKKEEV 91 (94)
T ss_pred EEEEECCccceE
Confidence 999998876654
No 215
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.97 E-value=5.1e-09 Score=70.05 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=56.2
Q ss_pred ceEecCCCeEEEEEEEE-----------ecCCCeeEEeeCCeeCCCCCc-----EEEEecCCeEEEEEccCCCCCCeEEE
Q psy1095 74 NKICDLGDTVRFQCSVT-----------GQPAPWTSWSKDGKPATPNAR-----VTIREKEDLRFLEISEVTLEDAGLYT 137 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~-----------~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~ 137 (325)
...+.+|+.+.|.|... ..+...+.|||++..+..... .++...+ ..|.|.++..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCChhhCeEEE
Confidence 35688999999999961 122347999999755433221 1222222 36999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEE
Q psy1095 138 IKVENNYGSVEATARLEI 155 (325)
Q Consensus 138 C~~~~~~~~~~~~~~l~v 155 (325)
|.+.|......-++.|+|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999998776666665553
No 216
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.96 E-value=7.7e-09 Score=66.40 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=51.0
Q ss_pred cEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254 (325)
Q Consensus 181 ~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 254 (325)
.++|+|...+..|+ +.++||+++.++..... ....+..+...+.|.+.....+|.+.|+|.|.|..+..
T Consensus 1 ~~~L~C~s~~skP~-a~i~W~k~~~~l~~~~~----~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPA-ATLRWYRDRKELKGVIS----QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCC-CeEEEEECCEECCCCcc----cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 37899998754443 89999999999864321 11233334456789999999999999999999987643
No 217
>smart00409 IG Immunoglobulin.
Probab=98.95 E-value=2.5e-08 Score=66.02 Aligned_cols=82 Identities=28% Similarity=0.621 Sum_probs=61.2
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeC-CEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
...+..|+.+.|.|.+.+.+. +.+.|+++ +..+......... ... ....|.|.+++..|+|.|.|.+.+..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v~~~~~~~~~--~~~----~~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLLAESGRFSVS--RSG----SNSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEcCCCCcEEEE--EcC----CeeEEEEEeeccccCeEEEEEEEcCC
Confidence 345678999999999988755 89999998 7666533332221 221 14689999999999999999999888
Q ss_pred CcEEeEEEEEE
Q psy1095 252 GEVVTSACLIV 262 (325)
Q Consensus 252 ~~~~~~~~l~v 262 (325)
+.....+.|.|
T Consensus 75 ~~~~~~~~l~V 85 (86)
T smart00409 75 GSASSTTTLTV 85 (86)
T ss_pred CeEEEEEEEEE
Confidence 87776666654
No 218
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.95 E-value=2.5e-08 Score=66.02 Aligned_cols=82 Identities=28% Similarity=0.621 Sum_probs=61.2
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeC-CEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRN-NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
...+..|+.+.|.|.+.+.+. +.+.|+++ +..+......... ... ....|.|.+++..|+|.|.|.+.+..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v~~~~~~~~~--~~~----~~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLLAESGRFSVS--RSG----SNSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEcCCCCcEEEE--EcC----CeeEEEEEeeccccCeEEEEEEEcCC
Confidence 345678999999999988755 89999998 7666533332221 221 14689999999999999999999888
Q ss_pred CcEEeEEEEEE
Q psy1095 252 GEVVTSACLIV 262 (325)
Q Consensus 252 ~~~~~~~~l~v 262 (325)
+.....+.|.|
T Consensus 75 ~~~~~~~~l~V 85 (86)
T smart00410 75 GSASSTTTLTV 85 (86)
T ss_pred CeEEEEEEEEE
Confidence 87776666654
No 219
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.95 E-value=5.7e-09 Score=69.66 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=52.4
Q ss_pred eeEecCCcEEEEEEE-Eec--CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095 174 LRCCDGDSVTFECQV-QVV--PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250 (325)
Q Consensus 174 ~~v~~g~~v~l~C~~-~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 250 (325)
..+.+|....|.|.- .++ +...+.+.|+|++.++......... ..+ ...|.|.++..+|+|.|+|.+.+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~--~~~-----~~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS--LKG-----STYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe--cCC-----CCEEEEEEcChhhCEEEEEEEEEe
Confidence 345678899999963 223 2233789999999987644321111 111 136999999999999999999998
Q ss_pred CCcEE
Q psy1095 251 LGEVV 255 (325)
Q Consensus 251 ~~~~~ 255 (325)
.+...
T Consensus 78 ~~g~~ 82 (95)
T cd05897 78 HEGKK 82 (95)
T ss_pred eCCEE
Confidence 76554
No 220
>KOG3515|consensus
Probab=98.93 E-value=2.5e-08 Score=89.15 Aligned_cols=299 Identities=12% Similarity=0.056 Sum_probs=162.8
Q ss_pred eeecccCCCCcccCCCCCCCCCCCCCcccCCCCCCCcc------cccccccccc--cccCCCC-eeEecCCceEecCCCe
Q psy1095 12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFT------PYSLNSAIRT--RRLTSSP-RFYAVPHNKICDLGDT 82 (325)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~------c~~~~~~~~~--~~~~~~p-~~~~~~~~~~v~~g~~ 82 (325)
.+.|.++.....-.+-..-.+..-.+.+....+.|.+. |.+.+..... ..+..+| ...+.+....+..|..
T Consensus 238 ~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s 317 (741)
T KOG3515|consen 238 QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRS 317 (741)
T ss_pred hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccc
Confidence 34555555544443333333444455555555666665 9988722221 2222223 2223344445778999
Q ss_pred EEEEEEEE-ecCCCeeEEeeCCeeCCCCCcE----EEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEE--EEEEEE
Q psy1095 83 VRFQCSVT-GQPAPWTSWSKDGKPATPNARV----TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA--TARLEI 155 (325)
Q Consensus 83 v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~v 155 (325)
..+.|... ++|...+.|+++.......... ..........+.+......|.|.|+|.+.+....... ...+.+
T Consensus 318 ~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~ 397 (741)
T KOG3515|consen 318 ARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPV 397 (741)
T ss_pred cccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccc
Confidence 99999865 4677889999965433221111 1011111233556777889999999999776543322 233344
Q ss_pred ECCCcccCCCeeeecCcC-eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCC
Q psy1095 156 MDPRAIISRPKVLNGLEN-LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234 (325)
Q Consensus 156 ~~~~~~~~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 234 (325)
... |.++..... ....+.+.....-.+.++|.. ..+.|.+.+.++.............+ ....+-+
T Consensus 398 l~~------p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~-~~~~w~~~~~~~~~~~g~~~~v~~~~------~~~s~~~ 464 (741)
T KOG3515|consen 398 LPS------PAFLVRHKTAVVAMEQDHQAAPLPVRGAPAE-RTFYWTFRLYKLSQVDGGVVRVGAGA------GLGSGVN 464 (741)
T ss_pred cCC------chhhhhcccceeeccCccccccCcccCCCcc-cchhheecceecccccCceEEeeccc------cccccce
Confidence 333 333322222 222334444444444455543 78999998887765544333322222 3344667
Q ss_pred CCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCCe------ecC-CCCce-------------------------------
Q psy1095 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK------DLT-SDGRL------------------------------- 276 (325)
Q Consensus 235 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~------~~~-~~~~~------------------------------- 276 (325)
+...|.|.|.|.++|..|.......+.+-..+.. .+. .++..
T Consensus 465 v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~ 544 (741)
T KOG3515|consen 465 VSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQ 544 (741)
T ss_pred eeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccc
Confidence 8999999999999999998877666444221110 000 00000
Q ss_pred --EEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEeccc
Q psy1095 277 --NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323 (325)
Q Consensus 277 --~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 323 (325)
..........+.+.......+|.|.|.+.|..--+.....|++...+
T Consensus 545 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~ 593 (741)
T KOG3515|consen 545 DAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSAL 593 (741)
T ss_pred cccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccc
Confidence 00011112356777777777899999999933344455566665544
No 221
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.92 E-value=1.8e-09 Score=67.38 Aligned_cols=63 Identities=37% Similarity=0.658 Sum_probs=42.7
Q ss_pred CCcEEEEEEE-EecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095 179 GDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247 (325)
Q Consensus 179 g~~v~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 247 (325)
|+.++|.|.+ .+.++ ..+.|++++............ ..+ ......|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~--~~~--~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPP--TTVTWSKNGQSLPEGSTTNRS--TNS--VSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSST--SEEEEEETTTTTSEEEEEEEE--ETT--TEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCC--cEEEEEECCccccCcceeEee--ccc--ceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 44444 899999987755432211111 111 111124999999999999999986
No 222
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.91 E-value=1.3e-08 Score=71.04 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=56.8
Q ss_pred EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCee---C-----------CCCCcEEEEec--CCeEEEEEccCCCCC
Q psy1095 69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP---A-----------TPNARVTIREK--EDLRFLEISEVTLED 132 (325)
Q Consensus 69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~---~-----------~~~~~~~~~~~--~~~~~l~i~~~~~~d 132 (325)
...|....+.+|++|+|.|.+.+.+...+.||+.... . ....++.+... .....|.|.+++.+|
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 3456677899999999999998777788999985321 0 12345554432 356789999999999
Q ss_pred CeEEEEEEEeCC
Q psy1095 133 AGLYTIKVENNY 144 (325)
Q Consensus 133 ~G~Y~C~~~~~~ 144 (325)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999997643
No 223
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.91 E-value=2e-08 Score=68.13 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=53.6
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEecc-C-----CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL-D-----SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 246 (325)
...+.+|+.+.|.|.+.+.+. +.+.|++.+..+.. . ...+...... ......|.|.+++.+|+|.|.|.
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~--~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDN--SSLQWSNPNQQTLYFNDKRALRDNRIQLVNF---SANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCC--ceEEEeCCCCcEEEeccccccccCcEEEEcC---CCCeeEEEEccCCcccCEEEEEE
Confidence 556889999999999987665 78999864332110 0 0011111000 01235799999999999999999
Q ss_pred EEeCCCcEEeEEEEE
Q psy1095 247 VANELGEVVTSACLI 261 (325)
Q Consensus 247 ~~~~~~~~~~~~~l~ 261 (325)
+..... ....+.|.
T Consensus 81 ~~~~~~-~~~~~~~~ 94 (95)
T cd05717 81 LYTMPV-QTAKATVT 94 (95)
T ss_pred EecCCC-ceEEEEEE
Confidence 987653 34455454
No 224
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.90 E-value=7.4e-09 Score=66.50 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=47.1
Q ss_pred EEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEecC----CeEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095 83 VRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKE----DLRFLEISEVTLEDAGLYTIKVENNYGS 146 (325)
Q Consensus 83 v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 146 (325)
+.|+|... +.|.+.++||++++++...... ...+ ...+|.|.....+|.+.|+|++.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~--~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ--QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc--ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 78999985 4899999999999999653211 1111 1246889899999999999999997653
No 225
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.89 E-value=2.3e-08 Score=68.41 Aligned_cols=83 Identities=22% Similarity=0.176 Sum_probs=54.9
Q ss_pred EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCee-----C----CC----------CCcEEEEecCCeEEEEEccCC
Q psy1095 69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-----A----TP----------NARVTIREKEDLRFLEISEVT 129 (325)
Q Consensus 69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~-----~----~~----------~~~~~~~~~~~~~~l~i~~~~ 129 (325)
++++.+..+.+|++|.|.|.....+...++|||.... + .. ..|..+.. ..+|.|.+++
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~---ngSL~I~~v~ 78 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP---NGSLLIQNVT 78 (105)
T ss_pred eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC---CCcEEEecCC
Confidence 3455666788999999999754333448999996321 1 00 12222222 2469999999
Q ss_pred CCCCeEEEEEEEeCC-eeEEEEEEEE
Q psy1095 130 LEDAGLYTIKVENNY-GSVEATARLE 154 (325)
Q Consensus 130 ~~d~G~Y~C~~~~~~-~~~~~~~~l~ 154 (325)
..|+|.|+|.+.+.. ......+.|.
T Consensus 79 ~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 79 QKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred cccCEEEEEEEEeCCccEEEEEEEEE
Confidence 999999999998866 3444454443
No 226
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.88 E-value=5.7e-09 Score=69.44 Aligned_cols=72 Identities=19% Similarity=0.349 Sum_probs=54.0
Q ss_pred cCeeEecCCcEEEEEE-EEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe-EEEEEEEe
Q psy1095 172 ENLRCCDGDSVTFECQ-VQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG-EFTCRVAN 249 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~-~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~ 249 (325)
....+.+|+.+.|.|. ..|.|. +.+.|++++...... ..+.....+ +.|.|.+++.+|+| .|.|.|.|
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~--P~i~W~~~~~~~i~~-~~Ri~~~~~-------GnL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVP--LRIYWMNSDLLHITQ-DERVSMGQN-------GNLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCC--CEEEEECCCCccccc-cccEEECCC-------ceEEEEEEehhhCCCCeEEEEEc
Confidence 4567899999999997 578887 899999876543222 222222233 48999999999999 89999998
Q ss_pred CCCc
Q psy1095 250 ELGE 253 (325)
Q Consensus 250 ~~~~ 253 (325)
....
T Consensus 81 ~~~~ 84 (95)
T cd05845 81 PGLR 84 (95)
T ss_pred cccc
Confidence 7643
No 227
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.87 E-value=1.9e-08 Score=70.18 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=54.6
Q ss_pred EecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe--eC----------------CCCCcEEEEecC-CeEEEEEccCC
Q psy1095 69 YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK--PA----------------TPNARVTIREKE-DLRFLEISEVT 129 (325)
Q Consensus 69 ~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~--~~----------------~~~~~~~~~~~~-~~~~l~i~~~~ 129 (325)
.+.|....+.+|++++|.|...+ +.+.+.|||... .. ....++...... ....|.|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 45677788999999999999977 677899998532 11 012344443332 45789999999
Q ss_pred CCCCeEEEEEEEeC
Q psy1095 130 LEDAGLYTIKVENN 143 (325)
Q Consensus 130 ~~d~G~Y~C~~~~~ 143 (325)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999998654
No 228
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.86 E-value=1.7e-08 Score=67.70 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=55.6
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
.|.+...|.. .|.+|++|+|.|... .+...+.|+|+|...... . .........+.|.+++.+|+|.|+|...+.
T Consensus 2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4677777754 588999999999875 567789999998754321 1 111233456999999999999999999775
No 229
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.85 E-value=4.3e-08 Score=64.40 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=51.0
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC 259 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 259 (325)
+.|.|.+.+..|. +.+.|++++..+..... ......++......+.|.+.....+|.|.|+|.|.|..........
T Consensus 2 ~~L~C~v~g~~P~-~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s 77 (82)
T cd05759 2 YNLTCRARGAKPA-AEIIWFRDGEVLDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETS 77 (82)
T ss_pred EEEEEEEeCccCC-CEEEEEECCEEccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEE
Confidence 6899999885333 79999999988754321 1111122333334568888888888999999999987654443333
No 230
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.84 E-value=3.3e-08 Score=68.52 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=54.9
Q ss_pred eEecCCceEecCCCeEEEEEEEEecC-CCeeEEeeCC--ee---C---------CCCCcEEEEecCCeEEEEEccCCCCC
Q psy1095 68 FYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSKDG--KP---A---------TPNARVTIREKEDLRFLEISEVTLED 132 (325)
Q Consensus 68 ~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d 132 (325)
+.+.|....+.+|++|+|.|.+.+.. ...+.|||.. +. + ....++..........|.|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 45667778899999999999987654 5679999743 11 0 01134554444456779999999999
Q ss_pred CeEEEEEEEe
Q psy1095 133 AGLYTIKVEN 142 (325)
Q Consensus 133 ~G~Y~C~~~~ 142 (325)
+|.|.|.+.+
T Consensus 83 sg~Y~Ca~~~ 92 (106)
T cd04980 83 AAVYYCQQYG 92 (106)
T ss_pred CEEEEEEEeC
Confidence 9999999854
No 231
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.83 E-value=3.2e-08 Score=66.33 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=52.2
Q ss_pred CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244 (325)
Q Consensus 165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 244 (325)
|.+...+ ...|..|+.|+|.|... .+. ..+.|+++|......... ..+ ..+.+.|.+++.+|+|.|+
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~--~~f~l~k~g~~~~~~~~~-----~~~----~~~~f~i~~v~~~~~G~Y~ 69 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGA--VEYRLYREGSTFAVKKPP-----EPQ----NKAKFFIPSMKREHAGRYR 69 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecC-CCC--CEEEEEECCCCccccccC-----CCc----eeEEEEccCCChhHCEEEE
Confidence 4444444 34678999999999885 333 689999998754321110 111 3468999999999999999
Q ss_pred EEEEeC
Q psy1095 245 CRVANE 250 (325)
Q Consensus 245 C~~~~~ 250 (325)
|.+.+.
T Consensus 70 C~~~~~ 75 (91)
T cd05751 70 CYYRSG 75 (91)
T ss_pred EEEECC
Confidence 999876
No 232
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.81 E-value=4.3e-08 Score=69.19 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=54.1
Q ss_pred ecCCceEecCCCeEEEEEEEEe--cCCCeeEEeeCC--eeC-----------------CCCCcEEEEecC--CeEEEEEc
Q psy1095 70 AVPHNKICDLGDTVRFQCSVTG--QPAPWTSWSKDG--KPA-----------------TPNARVTIREKE--DLRFLEIS 126 (325)
Q Consensus 70 ~~~~~~~v~~g~~v~l~C~~~~--~p~~~v~W~~~~--~~~-----------------~~~~~~~~~~~~--~~~~l~i~ 126 (325)
+.|..+.+.+|++|+|.|.+.+ .+.+.+.||+.. ... ....++.+.... ....|.|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 4456677889999999999877 567789999842 110 012355554444 56789999
Q ss_pred cCCCCCCeEEEEEEEe
Q psy1095 127 EVTLEDAGLYTIKVEN 142 (325)
Q Consensus 127 ~~~~~d~G~Y~C~~~~ 142 (325)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999854
No 233
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.81 E-value=1.2e-07 Score=66.21 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=52.4
Q ss_pred CeeEecCCcEEEEEEEEecCC--CCCeeEEee---------------CCEEec-cCCCCceEEEecCCcceeEEEEEeCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPP--NDHDISWFR---------------NNRLIK-LDSDMKPEVQVDSKENLVIARLKIPH 234 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~--~~~~~~W~~---------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~ 234 (325)
...+..|+.+.|.|....... ....+.|.+ ++.... ....++.+....+.......++.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 456788999999999976431 236899943 222211 01111112222222233568999999
Q ss_pred CCCCCCeEEEEEEEeCCCcE
Q psy1095 235 VYPEDEGEFTCRVANELGEV 254 (325)
Q Consensus 235 ~~~~d~G~Y~C~~~~~~~~~ 254 (325)
++.+|.|.|+|.+.|.....
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred CCcccCEEEEEEEEcCCCcC
Confidence 99999999999999876533
No 234
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.79 E-value=4.9e-08 Score=65.39 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=57.2
Q ss_pred CeeEecCCcEEEEEEEEe------cC---CCCCeeEEeeCCEEeccCCCCc---eEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095 173 NLRCCDGDSVTFECQVQV------VP---PNDHDISWFRNNRLIKLDSDMK---PEVQVDSKENLVIARLKIPHVYPEDE 240 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~------~~---~~~~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~ 240 (325)
...+.+|+.+.|.|.... ++ .+...+.|+|++..+....... .+....+ ..|.|.++..+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~------~~Lwf~Pa~~eDS 82 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE------DSIWFRPAELQDS 82 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC------CEEEEEeCChhhC
Confidence 356788999999998621 11 1115799999975554333111 1212222 5899999999999
Q ss_pred eEEEEEEEeCCCcEEeEEEEEE
Q psy1095 241 GEFTCRVANELGEVVTSACLIV 262 (325)
Q Consensus 241 G~Y~C~~~~~~~~~~~~~~l~v 262 (325)
|.|+|.+.|........+.|+|
T Consensus 83 G~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 83 GLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred eEEEEEECCCCcceEEEEEEEC
Confidence 9999999998877776666653
No 235
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.79 E-value=6.7e-08 Score=63.50 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=45.4
Q ss_pred eEEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEE-EEecCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 82 TVRFQCSVTG-QPAPWTSWSKDGKPATPNARVT-IREKED----LRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 82 ~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
.+.|.|.+.| .|.+.++|++++..+....... ....+. ...|.+.....+|.|.|+|.+.|...
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 3689999987 6888999999999875432111 111111 23577877777888999999988654
No 236
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.79 E-value=8.7e-08 Score=66.38 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=53.2
Q ss_pred CCCeEEEEEEEEecC------------CCeeEEeeCCe--e---C---------CC--CCcEEEEe---cCCeEEEEEcc
Q psy1095 79 LGDTVRFQCSVTGQP------------APWTSWSKDGK--P---A---------TP--NARVTIRE---KEDLRFLEISE 127 (325)
Q Consensus 79 ~g~~v~l~C~~~~~p------------~~~v~W~~~~~--~---~---------~~--~~~~~~~~---~~~~~~l~i~~ 127 (325)
.|++|+|.|.+.... .+.|.|+|... . + .. ..|+.+.. ..+..+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 46899998421 0 0 00 12444432 33567899999
Q ss_pred CCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095 128 VTLEDAGLYTIKVENNYGSVEATARLEIM 156 (325)
Q Consensus 128 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 156 (325)
++.+|+|.|.|.+.+........+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999998765555555666654
No 237
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.77 E-value=1.1e-08 Score=66.09 Aligned_cols=74 Identities=31% Similarity=0.476 Sum_probs=50.7
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEecC-CCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 142 (325)
+|.|...+.......+. +.|.|.+.+.+ .+.++|+ ....... ............|.|.++..+|.|.|+|.+.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 47777777776555444 99999998866 8899999 1111100 11111122345799999999999999999976
No 238
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.76 E-value=6.9e-08 Score=62.94 Aligned_cols=64 Identities=23% Similarity=0.379 Sum_probs=49.7
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 249 (325)
...+..|+++.|.|...+. . +.+.|++++..+..+.+ ...... .|.|..++.+|+|.|.|.+.-
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~--A~v~W~~ng~~l~~~~r--~~~~~~--------GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-L--ASPVWLFNGTPLNAQFS--YRVGTD--------GLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEEecCCCEEEECCCCCC-C--ccEEEEECCcccCCCcc--eEEeCC--------CCEEEECCHhhCEEEEEEEec
Confidence 4568889999999998764 3 68999999998865432 222233 388999999999999999873
No 239
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.76 E-value=1.5e-07 Score=64.48 Aligned_cols=76 Identities=22% Similarity=0.303 Sum_probs=50.9
Q ss_pred CCeEEEEEEEEecC---CCeeEEeeCCe--e---------CCC------CCcEEEEe---cCCeEEEEEccCCCCCCeEE
Q psy1095 80 GDTVRFQCSVTGQP---APWTSWSKDGK--P---------ATP------NARVTIRE---KEDLRFLEISEVTLEDAGLY 136 (325)
Q Consensus 80 g~~v~l~C~~~~~p---~~~v~W~~~~~--~---------~~~------~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y 136 (325)
|++|+|+|.+.... ...+.|++... . ... ..++.+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78899999986321 23678887541 1 110 02333221 13457899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy1095 137 TIKVENNYGSVEATARLEI 155 (325)
Q Consensus 137 ~C~~~~~~~~~~~~~~l~v 155 (325)
+|.+.+..+..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776677777765
No 240
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.75 E-value=1.7e-07 Score=65.00 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=54.7
Q ss_pred CCCeEEEEEEEEecC------CCeeEEeeCC---e---eC--CCC--------CcEEEE---ecCCeEEEEEccCCCCCC
Q psy1095 79 LGDTVRFQCSVTGQP------APWTSWSKDG---K---PA--TPN--------ARVTIR---EKEDLRFLEISEVTLEDA 133 (325)
Q Consensus 79 ~g~~v~l~C~~~~~p------~~~v~W~~~~---~---~~--~~~--------~~~~~~---~~~~~~~l~i~~~~~~d~ 133 (325)
.|++|+|.|.+...+ ...+.|++.. . .+ ... .+.++. ...+..+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 389999999987643 4689999862 1 01 001 111111 123457899999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095 134 GLYTIKVENNYGSVEATARLEIMD 157 (325)
Q Consensus 134 G~Y~C~~~~~~~~~~~~~~l~v~~ 157 (325)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998766667777777754
No 241
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.75 E-value=5.9e-08 Score=65.85 Aligned_cols=77 Identities=22% Similarity=0.334 Sum_probs=56.2
Q ss_pred ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253 (325)
Q Consensus 177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 253 (325)
..|+.+.|.|.+.++.+..+.+.|+++|..+.............+..+...+.|.+......|.|.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 35889999999999855447899999999886544311222233344556678888887778999999999987653
No 242
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.74 E-value=7.8e-08 Score=64.77 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=51.3
Q ss_pred CeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE 141 (325)
Q Consensus 66 p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 141 (325)
|.+...|.. .+.+|++|+|.|.... +...+.|+|++...................+.|..++.+|+|.|.|...
T Consensus 2 P~l~a~p~~-vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPSP-VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecCCC-ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 666666644 4889999999998764 5567999998865332110000111224468999999999999999975
No 243
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.74 E-value=1.6e-07 Score=65.52 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=51.4
Q ss_pred cCCceEecCCCeEEEEEEEEec----CCCeeEEee---------------CCeeCC-CC----CcEEEEe--cCCeEEEE
Q psy1095 71 VPHNKICDLGDTVRFQCSVTGQ----PAPWTSWSK---------------DGKPAT-PN----ARVTIRE--KEDLRFLE 124 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~~~~----p~~~v~W~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~ 124 (325)
.+..+.+..|++++|.|.+... +...+.|.+ ++.... .. .|..... ..+..+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 4556678899999999998653 345889932 233222 11 1333222 23456899
Q ss_pred EccCCCCCCeEEEEEEEeCCe
Q psy1095 125 ISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 125 i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
|.+++.+|+|.|+|.+.|...
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EccCCcccCEEEEEEEEcCCC
Confidence 999999999999999988654
No 244
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.72 E-value=4e-07 Score=60.85 Aligned_cols=70 Identities=21% Similarity=0.385 Sum_probs=50.3
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEec--------cCCCCceEEEe-cCCcceeEEEEEeCCCCCCCCeEE
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--------LDSDMKPEVQV-DSKENLVIARLKIPHVYPEDEGEF 243 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y 243 (325)
...+.+|+++.|.|.+..... ..+.|++.+..+. .+.++ .... .+ ....|.|.+++.+|+|.|
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~--~~v~w~~~~~~~i~~~~~~~~~d~Rf--~~~~~~~----~~~tL~I~~vq~~D~G~Y 77 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDD--SVIQLLNPNRQTIYFRDVRPLKDSRF--QLVNFSS----NELRVSLSNVSLSDEGRY 77 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCc--cEEEEEecCCcEEEecCccccCCcCE--EEEeCCC----CEEEEEECcCCcccCEEE
Confidence 567889999999999987665 6788887664431 12222 2111 22 356799999999999999
Q ss_pred EEEEEeC
Q psy1095 244 TCRVANE 250 (325)
Q Consensus 244 ~C~~~~~ 250 (325)
.|.+...
T Consensus 78 ~Cqv~t~ 84 (95)
T cd05881 78 FCQLYTD 84 (95)
T ss_pred EEEEEcc
Confidence 9999764
No 245
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.72 E-value=2.9e-07 Score=63.75 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=56.0
Q ss_pred cCCcEEEEEEEEecC----CCCCeeEEeeCC-----E-Eec--cCC------CCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095 178 DGDSVTFECQVQVVP----PNDHDISWFRNN-----R-LIK--LDS------DMKPEVQVDSKENLVIARLKIPHVYPED 239 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~----~~~~~~~W~~~~-----~-~~~--~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d 239 (325)
.|++|+|.|.....+ .....+.|++.. . .+. ... ..+.+.... ......+.|.|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 388999999987653 123789999862 1 111 111 111111100 012256899999999999
Q ss_pred CeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095 240 EGEFTCRVANELGEVVTSACLIVD 263 (325)
Q Consensus 240 ~G~Y~C~~~~~~~~~~~~~~l~v~ 263 (325)
+|.|.|.+.+..+.....+.|.|.
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEE
Confidence 999999999987777777777774
No 246
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.71 E-value=1e-07 Score=65.95 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=51.2
Q ss_pred EecCCCeEEEEEEEEec-CCCeeEEeeCCee-----C------------CCCCcEEEEecC--CeEEEEEccCCCCCCeE
Q psy1095 76 ICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKP-----A------------TPNARVTIREKE--DLRFLEISEVTLEDAGL 135 (325)
Q Consensus 76 ~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~-----~------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~ 135 (325)
.+.+|++++|.|.+... +...+.|++.... + ....++.+.... ...+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 47789999999999875 6678999985321 0 012344443332 56789999999999999
Q ss_pred EEEEEEeCCe
Q psy1095 136 YTIKVENNYG 145 (325)
Q Consensus 136 Y~C~~~~~~~ 145 (325)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999976553
No 247
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.70 E-value=2.1e-07 Score=64.62 Aligned_cols=79 Identities=29% Similarity=0.454 Sum_probs=54.6
Q ss_pred CCCeEEEEEEEEecC----------CCeeEEeeCC--eeC------------CC--CCcEEEE---ecCCeEEEEEccCC
Q psy1095 79 LGDTVRFQCSVTGQP----------APWTSWSKDG--KPA------------TP--NARVTIR---EKEDLRFLEISEVT 129 (325)
Q Consensus 79 ~g~~v~l~C~~~~~p----------~~~v~W~~~~--~~~------------~~--~~~~~~~---~~~~~~~l~i~~~~ 129 (325)
.|++|+|+|.+...+ ...+.|+|.. ... .. ..|+.+. ...+..+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999986543 3578999852 110 00 1233332 12345779999999
Q ss_pred CCCCeEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095 130 LEDAGLYTIKVENNYGSVEATARLEIMD 157 (325)
Q Consensus 130 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 157 (325)
.+|+|.|.|.+.......++.+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999987666667777777754
No 248
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.70 E-value=4.9e-08 Score=62.90 Aligned_cols=74 Identities=26% Similarity=0.432 Sum_probs=47.0
Q ss_pred CeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244 (325)
Q Consensus 165 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 244 (325)
|.+...........+ .+.|.|.+.+.++. +.+.|+ +....... .........+.|.|.++..+|.|.|+
T Consensus 2 P~I~~~~~~~~~~~~-~~~l~C~~~~~~~~-~~~~W~-~~~~~~~~--------~~~~~~~~~~~L~i~~v~~~~~g~y~ 70 (75)
T PF13927_consen 2 PQISVPPPPVVTSGG-SVTLTCSAEGGPPP-PSISWY-DSNPSFNS--------NSRGSSSSNSTLTISNVTRSDNGTYT 70 (75)
T ss_dssp SEEEEESTSEEETTE-EEEEEEEESSEESS-EEEEEE-TEEEEEEE--------EEEEEEEEEEEEEESSCCGGGTEEEE
T ss_pred CEEEEcCCCcEeece-eEEEEEEEccccCC-eEEEEE-ecCCceee--------eeeeccceeeEEEEccCCHHhCcEEE
Confidence 444444444333333 39999999888742 899999 11111000 11111224578999999999999999
Q ss_pred EEEEe
Q psy1095 245 CRVAN 249 (325)
Q Consensus 245 C~~~~ 249 (325)
|.|.|
T Consensus 71 C~a~N 75 (75)
T PF13927_consen 71 CIASN 75 (75)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99986
No 249
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.69 E-value=2.6e-07 Score=63.08 Aligned_cols=75 Identities=23% Similarity=0.389 Sum_probs=50.3
Q ss_pred CeEEEEEEEEecC---CCeeEEeeCCee---------------CCCC--CcEEEEecC-CeEEEEEccCCCCCCeEEEEE
Q psy1095 81 DTVRFQCSVTGQP---APWTSWSKDGKP---------------ATPN--ARVTIREKE-DLRFLEISEVTLEDAGLYTIK 139 (325)
Q Consensus 81 ~~v~l~C~~~~~p---~~~v~W~~~~~~---------------~~~~--~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~ 139 (325)
++|+|.|.+...+ ...|.|+|.... +... .+..+.... ...+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4799999987643 346899985421 0111 122211111 456899999999999999999
Q ss_pred EEe-CCeeEEEEEEEEE
Q psy1095 140 VEN-NYGSVEATARLEI 155 (325)
Q Consensus 140 ~~~-~~~~~~~~~~l~v 155 (325)
+.. ..|...+.+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 864 5567777777776
No 250
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.69 E-value=3e-07 Score=63.72 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=54.4
Q ss_pred CCCeEEEEEEEEecC------CCeeEEeeCCee--------CC--------C--CCcEEEEe-cCCeEEEEEccCCCCCC
Q psy1095 79 LGDTVRFQCSVTGQP------APWTSWSKDGKP--------AT--------P--NARVTIRE-KEDLRFLEISEVTLEDA 133 (325)
Q Consensus 79 ~g~~v~l~C~~~~~p------~~~v~W~~~~~~--------~~--------~--~~~~~~~~-~~~~~~l~i~~~~~~d~ 133 (325)
.|++|+|.|.+...| ...+.|+|.... +. . ..++.+.. ..+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 346999985310 00 0 12333321 12346799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEE
Q psy1095 134 GLYTIKVENNYGSVEATARLEIM 156 (325)
Q Consensus 134 G~Y~C~~~~~~~~~~~~~~l~v~ 156 (325)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999998877777777777765
No 251
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.66 E-value=1.7e-07 Score=65.35 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=50.9
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEE------ecc------CCCCceEEEecCCcceeEEEEEeCCCCCC
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRL------IKL------DSDMKPEVQVDSKENLVIARLKIPHVYPE 238 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 238 (325)
+....+.+|++++|.|.+.+.+. ..+.|++.... +.. ....+...... .......|.|.+++.+
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~--~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTF--YYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD--KSRKSSSLHISAAQLS 80 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCc--cEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc--ccCCEEEEEECCCCHH
Confidence 34567889999999999986644 78999984321 000 00111111111 1124578999999999
Q ss_pred CCeEEEEEEEeCC
Q psy1095 239 DEGEFTCRVANEL 251 (325)
Q Consensus 239 d~G~Y~C~~~~~~ 251 (325)
|+|.|.|.+.+..
T Consensus 81 DsG~Y~C~~~~~~ 93 (109)
T cd04983 81 DSAVYFCALSESG 93 (109)
T ss_pred HCEEEEEEEecCC
Confidence 9999999998754
No 252
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.66 E-value=6.4e-07 Score=62.92 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=59.7
Q ss_pred eEecCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCe-----eCC----C----------CCcEEEEec--CCeEEEEE
Q psy1095 68 FYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGK-----PAT----P----------NARVTIREK--EDLRFLEI 125 (325)
Q Consensus 68 ~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~-----~~~----~----------~~~~~~~~~--~~~~~l~i 125 (325)
+...|..+.+.+|+++.|.|... ......+.|++... .+. . ..++.+... ....+|.|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 44557778899999999999998 44566899998322 111 0 123332222 34678999
Q ss_pred ccCCCCCCeEEEEEEEeCC-eeEEEEEEEEE
Q psy1095 126 SEVTLEDAGLYTIKVENNY-GSVEATARLEI 155 (325)
Q Consensus 126 ~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v 155 (325)
.+++.+|+|.|.|.+.... ......+.|.|
T Consensus 84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999999998762 33344455543
No 253
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.64 E-value=1.5e-07 Score=63.81 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=52.2
Q ss_pred cCCCeEEEEEEEEe-cCCCeeEEeeCCeeCC--C-----------CCcE--EEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095 78 DLGDTVRFQCSVTG-QPAPWTSWSKDGKPAT--P-----------NARV--TIREKEDLRFLEISEVTLEDAGLYTIKVE 141 (325)
Q Consensus 78 ~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~~--~-----------~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 141 (325)
..|++|+|+|.... .....+.|++....+. . ..++ +........+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46999999998754 4445789998642210 0 0111 22223445789999999999999999998
Q ss_pred eCCee-EEEEEEEEE
Q psy1095 142 NNYGS-VEATARLEI 155 (325)
Q Consensus 142 ~~~~~-~~~~~~l~v 155 (325)
...+. ....+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 76553 355666655
No 254
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.63 E-value=6.9e-07 Score=61.89 Aligned_cols=85 Identities=21% Similarity=0.391 Sum_probs=55.1
Q ss_pred cCCcEEEEEEEEecC----CCCCeeEEeeCCE------E-e-ccC------CCCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095 178 DGDSVTFECQVQVVP----PNDHDISWFRNNR------L-I-KLD------SDMKPEVQVDSKENLVIARLKIPHVYPED 239 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~----~~~~~~~W~~~~~------~-~-~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 239 (325)
.|++++|.|.....| .....+.|++... . + ... ..+..+..... .....+.|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHH
Confidence 388999999987653 2226799998531 1 0 100 00111111110 01134689999999999
Q ss_pred CeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095 240 EGEFTCRVANELGEVVTSACLIVD 263 (325)
Q Consensus 240 ~G~Y~C~~~~~~~~~~~~~~l~v~ 263 (325)
+|.|.|.+.+..+.....+.|.|.
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEE
Confidence 999999999988888888777773
No 255
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.63 E-value=2.8e-07 Score=61.98 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=53.2
Q ss_pred eeEecCCceEecCCCeEEEEEEEEe-cCCCe--eEEeeCCeeCCCCCcEEE--EecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095 67 RFYAVPHNKICDLGDTVRFQCSVTG-QPAPW--TSWSKDGKPATPNARVTI--REKEDLRFLEISEVTLEDAGLYTIKVE 141 (325)
Q Consensus 67 ~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 141 (325)
.+.+.+.+..+.+|+.++|.|.+.+ .|.+. ++||+++..+........ .......+|.+.....+|...|+|++.
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~ 82 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETE 82 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence 4555666666889999999999976 67776 699999998864321110 111223457766555555559999998
Q ss_pred eCCe
Q psy1095 142 NNYG 145 (325)
Q Consensus 142 ~~~~ 145 (325)
+...
T Consensus 83 l~l~ 86 (100)
T cd05755 83 LDLR 86 (100)
T ss_pred eccC
Confidence 7654
No 256
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.62 E-value=2.8e-07 Score=62.06 Aligned_cols=72 Identities=26% Similarity=0.336 Sum_probs=48.8
Q ss_pred CCeEEEEEEEEecCCCeeEEeeCCeeCCC------------------CCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATP------------------NARVTIREKEDLRFLEISEVTLEDAGLYTIKVE 141 (325)
Q Consensus 80 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 141 (325)
|++|+|.|.....+...+.|+++...... ..++.+. . ..+|.|.+++.+|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~-~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--P-NGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--C-CceEEEccCCchhcEEEEEEEE
Confidence 78999999987656668999986533211 0122221 2 2679999999999999999997
Q ss_pred eCCe-eEEEEEEEE
Q psy1095 142 NNYG-SVEATARLE 154 (325)
Q Consensus 142 ~~~~-~~~~~~~l~ 154 (325)
...+ .....+.|.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 7653 333444443
No 257
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.62 E-value=8.6e-07 Score=61.59 Aligned_cols=86 Identities=21% Similarity=0.371 Sum_probs=54.8
Q ss_pred cCCcEEEEEEEEecCC--------CCCeeEEeeCC--EEec----------cCCCCceEEEecC-CcceeEEEEEeCCCC
Q psy1095 178 DGDSVTFECQVQVVPP--------NDHDISWFRNN--RLIK----------LDSDMKPEVQVDS-KENLVIARLKIPHVY 236 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~--------~~~~~~W~~~~--~~~~----------~~~~~~~~~~~~~-~~~~~~~~l~i~~~~ 236 (325)
.|++++|+|.....+. ....+.|++.. .... ....+..+....+ ......+.|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3889999999875442 12679999852 1110 0111111111110 111245789999999
Q ss_pred CCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095 237 PEDEGEFTCRVANELGEVVTSACLIVD 263 (325)
Q Consensus 237 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 263 (325)
.+|+|.|.|.+..........+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999877777777777663
No 258
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.62 E-value=3.7e-07 Score=62.45 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=51.2
Q ss_pred cCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE-----Eec-cCCCCceEE---EecCC-cceeEEEEEeCCCCCCCCe
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR-----LIK-LDSDMKPEV---QVDSK-ENLVIARLKIPHVYPEDEG 241 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~-----~~~-~~~~~~~~~---~~~~~-~~~~~~~l~i~~~~~~d~G 241 (325)
.+..+.+|+++.|.|... |.....+.|+|... .+. ......... ...++ .-..+++|.|.+++.+|+|
T Consensus 6 ~p~~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 6 VPPQVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred cCCcccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 345677899999999653 44335899999522 110 000000000 00111 0112358999999999999
Q ss_pred EEEEEEEeCCC-cEEeEEEE
Q psy1095 242 EFTCRVANELG-EVVTSACL 260 (325)
Q Consensus 242 ~Y~C~~~~~~~-~~~~~~~l 260 (325)
.|+|.+.+... .......|
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEEEeCCccEEEEEEEE
Confidence 99999998773 33333333
No 259
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.61 E-value=7.4e-07 Score=62.49 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=49.9
Q ss_pred cCeeEecCCcEEEEEEEEecCC-C-CCeeEEeeC----CEE--ec-c--------CCCCceEEEecCCcceeEEEEEeCC
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPP-N-DHDISWFRN----NRL--IK-L--------DSDMKPEVQVDSKENLVIARLKIPH 234 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~-~-~~~~~W~~~----~~~--~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~ 234 (325)
..+.+.+|+.++|.|.....++ . ...+.|++. +.. +. . ..++..+....+......+.|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 3567889999999999865432 1 146999751 111 10 0 1111111111111122457899999
Q ss_pred CCCCCCeEEEEEEEeCCC
Q psy1095 235 VYPEDEGEFTCRVANELG 252 (325)
Q Consensus 235 ~~~~d~G~Y~C~~~~~~~ 252 (325)
++.+|+|.|.|.+.|...
T Consensus 86 v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CChhhCEEEEEEEEeCCC
Confidence 999999999999998654
No 260
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.61 E-value=5.5e-07 Score=62.39 Aligned_cols=85 Identities=18% Similarity=0.256 Sum_probs=53.8
Q ss_pred cCCcEEEEEEEEecCC----------CCCeeEEeeCC--EE---ec-c------CCCCceEEEecC-CcceeEEEEEeCC
Q psy1095 178 DGDSVTFECQVQVVPP----------NDHDISWFRNN--RL---IK-L------DSDMKPEVQVDS-KENLVIARLKIPH 234 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~----------~~~~~~W~~~~--~~---~~-~------~~~~~~~~~~~~-~~~~~~~~l~i~~ 234 (325)
.|++++|.|....... ..+.+.|+|.. .+ +. . ...++.+..... ......+.|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4889999999874331 12689999842 11 10 0 111111111110 0112458999999
Q ss_pred CCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095 235 VYPEDEGEFTCRVANELGEVVTSACLIV 262 (325)
Q Consensus 235 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 262 (325)
++.+|+|.|+|.+.+........+.|.|
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEE
Confidence 9999999999999987777777766666
No 261
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.59 E-value=1e-06 Score=56.78 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=49.8
Q ss_pred EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecC---CeEEEEEccCCCCCCeEEEEEEEeCCee-EEEEEEEEEE
Q psy1095 83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKE---DLRFLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIM 156 (325)
Q Consensus 83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~ 156 (325)
+.|.|.+.| .|.+.|+||+++.++...........+ ...+|.|..-..+|...|+|++.|..-. ......|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999876 789999999999998764322111111 2346777766677777999999876532 3444555554
No 262
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.58 E-value=4.9e-07 Score=61.61 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=49.5
Q ss_pred EecCCCeEEEEEEEEec--CCCeeEEeeCCe--eC------------CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEE
Q psy1095 76 ICDLGDTVRFQCSVTGQ--PAPWTSWSKDGK--PA------------TPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139 (325)
Q Consensus 76 ~v~~g~~v~l~C~~~~~--p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 139 (325)
.+.+|++|+|.|...+. ....+.||+... .. ....++..........|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998664 456799998432 11 012356655555667899999999999999998
Q ss_pred EEe
Q psy1095 140 VEN 142 (325)
Q Consensus 140 ~~~ 142 (325)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 854
No 263
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.56 E-value=1.9e-06 Score=55.57 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=52.5
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC-cEEeEEEE
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG-EVVTSACL 260 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l 260 (325)
++|.|.+.|..|+ +.++|++++.++...... ....+......+.|.|..-..+|...|+|.|.|..- .......|
T Consensus 2 ~~L~C~s~gSkP~-A~I~W~k~~~~l~~~~~~---~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L 77 (82)
T cd05883 2 IELNCTAMASKPA-ATIRWFKGNKELTGKSTV---EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYL 77 (82)
T ss_pred EEEEEEecCCCCC-CEEEEEECCEECcCcccc---eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence 6899999876655 899999999988643221 112223345668899977777777799999998653 23334445
Q ss_pred EE
Q psy1095 261 IV 262 (325)
Q Consensus 261 ~v 262 (325)
.|
T Consensus 78 ~V 79 (82)
T cd05883 78 EV 79 (82)
T ss_pred EE
Confidence 44
No 264
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.56 E-value=1e-06 Score=61.83 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=49.6
Q ss_pred cCCceEecCCCeEEEEEEEEecC----CCeeEEeeC----Cee--C---C------CCC----cEEEEe--cCCeEEEEE
Q psy1095 71 VPHNKICDLGDTVRFQCSVTGQP----APWTSWSKD----GKP--A---T------PNA----RVTIRE--KEDLRFLEI 125 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~~----~~~--~---~------~~~----~~~~~~--~~~~~~l~i 125 (325)
.|..+.+.+|++++|.|.+...+ ...+.|++. +.+ + . ... ++.... ..+..+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45567789999999999986533 236899852 111 1 0 011 211111 123567999
Q ss_pred ccCCCCCCeEEEEEEEeCCe
Q psy1095 126 SEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 126 ~~~~~~d~G~Y~C~~~~~~~ 145 (325)
.+++.+|+|.|.|.+.+...
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eeCChhhCEEEEEEEEeCCC
Confidence 99999999999999987654
No 265
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.56 E-value=1.1e-06 Score=59.85 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=51.2
Q ss_pred CcEEEEEEEEecCC-CCCeeEEeeCCEE----e---cc------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095 180 DSVTFECQVQVVPP-NDHDISWFRNNRL----I---KL------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245 (325)
Q Consensus 180 ~~v~l~C~~~~~~~-~~~~~~W~~~~~~----~---~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 245 (325)
++|+|.|.....+. ....+.|+|.... + .. ...+..+....+. ......|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS-SLEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC-CCCceEEEEccCCcccCEEEEE
Confidence 46899999876541 1157999995431 0 00 0111111111110 0135789999999999999999
Q ss_pred EEEe-CCCcEEeEEEEEE
Q psy1095 246 RVAN-ELGEVVTSACLIV 262 (325)
Q Consensus 246 ~~~~-~~~~~~~~~~l~v 262 (325)
.+.. ..|.......|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9875 6677777777766
No 266
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.55 E-value=1.7e-06 Score=55.64 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=53.3
Q ss_pred eEecCCCeEEEEEEEEec--CCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy1095 75 KICDLGDTVRFQCSVTGQ--PAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATAR 152 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 152 (325)
..+..|++++|+|..... |.+.++|+..+...-. ....+..+|.+..+...|+|.++|.+....-.....+.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 357789999999998553 4459999965433211 11123457999999999999999999765444555666
Q ss_pred EEEE
Q psy1095 153 LEIM 156 (325)
Q Consensus 153 l~v~ 156 (325)
+.|.
T Consensus 83 V~Vl 86 (88)
T cd07694 83 IKVL 86 (88)
T ss_pred EEEE
Confidence 6554
No 267
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.55 E-value=4.6e-07 Score=61.67 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=53.1
Q ss_pred EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
...++.++|.|.+.++.+.+..+.|+++|..+..+..........+..+...+.|.+..-...+...|+|.+.+...
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 34567899999999977766899999999988543221111112233455567787876665567799999988653
No 268
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.54 E-value=1.3e-06 Score=56.07 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=48.1
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
++|.|.+.++.|+...+.|+++|.++..+..........+..+...+.|.|.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999998665579999999987543321111111233355566778887767777789999998764
No 269
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.52 E-value=1.5e-06 Score=59.52 Aligned_cols=84 Identities=19% Similarity=0.322 Sum_probs=50.6
Q ss_pred CCcEEEEEEEEecCC-CCCeeEEeeCCE--Eec--cC---------CCCceEEEec-CCcceeEEEEEeCCCCCCCCeEE
Q psy1095 179 GDSVTFECQVQVVPP-NDHDISWFRNNR--LIK--LD---------SDMKPEVQVD-SKENLVIARLKIPHVYPEDEGEF 243 (325)
Q Consensus 179 g~~v~l~C~~~~~~~-~~~~~~W~~~~~--~~~--~~---------~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y 243 (325)
|+++.|.|....... ....+.|++... .+. .. ..+..+.... +........|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678999999863221 124688988542 110 00 0011111110 00112347899999999999999
Q ss_pred EEEEEeCCCcEEeEEEEEE
Q psy1095 244 TCRVANELGEVVTSACLIV 262 (325)
Q Consensus 244 ~C~~~~~~~~~~~~~~l~v 262 (325)
+|.+.+..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776666666654
No 270
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.52 E-value=1.1e-06 Score=61.92 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=49.6
Q ss_pred cCCceEecCCCeEEEEEEEEecC----CCeeEEeeCCe------eC---------C-CCC----cEEEEe--cCCeEEEE
Q psy1095 71 VPHNKICDLGDTVRFQCSVTGQP----APWTSWSKDGK------PA---------T-PNA----RVTIRE--KEDLRFLE 124 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~~~~p----~~~v~W~~~~~------~~---------~-~~~----~~~~~~--~~~~~~l~ 124 (325)
.|..+.+.+|++++|.|.+.... ...+.|++... .+ . ... |+.+.. ..+..+|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 45667788999999999986432 24689986321 00 0 011 122211 12346799
Q ss_pred EccCCCCCCeEEEEEEEeCCe
Q psy1095 125 ISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 125 i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
|.+++.+|+|.|.|.+.+...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999987544
No 271
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.52 E-value=1.4e-06 Score=58.37 Aligned_cols=76 Identities=11% Similarity=0.294 Sum_probs=51.6
Q ss_pred cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 253 (325)
.++.++|.|.+.++.|....+.|.++|..+.............+..+...+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 3566999999999877668999999998864332111111233335555677777755555667999999987544
No 272
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.52 E-value=1.1e-06 Score=59.20 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=52.1
Q ss_pred cCcCeeEecCCcEEEEEEEEecCCC-CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEE
Q psy1095 170 GLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248 (325)
Q Consensus 170 ~~~~~~v~~g~~v~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 248 (325)
.+....+.+|+.++|.|.+.+..|. ...+.|++++..+....... ..........+|.+..-+.+|...|+|.|.
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~----~~~~~~~~~stlt~~~~r~D~g~~~sC~A~ 82 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD----NTKSPVNAPATITITVDREDHGANFSCETE 82 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc----ccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence 3344557899999999999875553 22479999999886432211 001112234677776555555559999999
Q ss_pred eCCCc
Q psy1095 249 NELGE 253 (325)
Q Consensus 249 ~~~~~ 253 (325)
+..+.
T Consensus 83 l~l~~ 87 (100)
T cd05755 83 LDLRP 87 (100)
T ss_pred eccCc
Confidence 87654
No 273
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.51 E-value=2.5e-06 Score=57.36 Aligned_cols=71 Identities=21% Similarity=0.405 Sum_probs=45.9
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
++.++|.|.+.|+.+....+.|.+++..+.............+..+...+.|.+.. .+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence 67899999999987655799999998643322221111112222334455666654 377899999988654
No 274
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.50 E-value=1.1e-06 Score=61.89 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=54.2
Q ss_pred eEecCCceEecCCCeEEEEEEEEec-CCCeeEEeeCC--ee---C---------CCCCcEEEEe--cCCeEEEEEccCCC
Q psy1095 68 FYAVPHNKICDLGDTVRFQCSVTGQ-PAPWTSWSKDG--KP---A---------TPNARVTIRE--KEDLRFLEISEVTL 130 (325)
Q Consensus 68 ~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~v~W~~~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~ 130 (325)
+.+.|..+.+.+|++|+|.|..... ....+.|||.. .. + ....++.+.. .....+|.|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 3456777789999999999998653 45678999842 11 0 1124555542 24467899999999
Q ss_pred CCCeEEEEEEEe
Q psy1095 131 EDAGLYTIKVEN 142 (325)
Q Consensus 131 ~d~G~Y~C~~~~ 142 (325)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999864
No 275
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.50 E-value=2.1e-06 Score=60.43 Aligned_cols=81 Identities=22% Similarity=0.400 Sum_probs=49.5
Q ss_pred cCeeEecCCcEEEEEEEEecCC--CCCeeEEeeCCE------Ee-cc---------CCCCceEEEecCCcceeEEEEEeC
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPP--NDHDISWFRNNR------LI-KL---------DSDMKPEVQVDSKENLVIARLKIP 233 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~--~~~~~~W~~~~~------~~-~~---------~~~~~~~~~~~~~~~~~~~~l~i~ 233 (325)
....+..|+.++|.|....... ....+.|++... .+ .. ..++..+....+......+.|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 3456789999999998864331 125699986321 11 00 111111111111112234789999
Q ss_pred CCCCCCCeEEEEEEEeCCC
Q psy1095 234 HVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 234 ~~~~~d~G~Y~C~~~~~~~ 252 (325)
+++.+|+|.|.|.+.+...
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eCCcccCEEEEEEEEeCCC
Confidence 9999999999999997654
No 276
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.49 E-value=2.1e-06 Score=59.22 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=53.6
Q ss_pred CCcEEEEEEEEecCC-----CCCeeEEeeCC-----EEe--c--c------CCCCceEEEecC-CcceeEEEEEeCCCCC
Q psy1095 179 GDSVTFECQVQVVPP-----NDHDISWFRNN-----RLI--K--L------DSDMKPEVQVDS-KENLVIARLKIPHVYP 237 (325)
Q Consensus 179 g~~v~l~C~~~~~~~-----~~~~~~W~~~~-----~~~--~--~------~~~~~~~~~~~~-~~~~~~~~l~i~~~~~ 237 (325)
|+.++|.|...-.|. ..+.+.|.+.. ... . . ...++.+....+ ......+.|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 778999999764332 13789998741 111 0 0 111111111111 1122568999999999
Q ss_pred CCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095 238 EDEGEFTCRVANELGEVVTSACLIV 262 (325)
Q Consensus 238 ~d~G~Y~C~~~~~~~~~~~~~~l~v 262 (325)
+|+|.|.|.+..........+.|.|
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEE
Confidence 9999999999997766777777766
No 277
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.48 E-value=2.5e-06 Score=58.89 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=53.1
Q ss_pred CCCeEEEEEEEEecC-------CCeeEEeeCC-----eeC----CC----------CCcEEEEe---cCCeEEEEEccCC
Q psy1095 79 LGDTVRFQCSVTGQP-------APWTSWSKDG-----KPA----TP----------NARVTIRE---KEDLRFLEISEVT 129 (325)
Q Consensus 79 ~g~~v~l~C~~~~~p-------~~~v~W~~~~-----~~~----~~----------~~~~~~~~---~~~~~~l~i~~~~ 129 (325)
.|++|+|+|.+.-.| .+.+.|.+.. ... .. ..|..+.. ..+..+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378999999976332 3688999741 110 00 12333322 1245789999999
Q ss_pred CCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095 130 LEDAGLYTIKVENNYGSVEATARLEIM 156 (325)
Q Consensus 130 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 156 (325)
.+|+|.|.|.+.......+..+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999998866566777777775
No 278
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.47 E-value=9.4e-07 Score=61.13 Aligned_cols=76 Identities=22% Similarity=0.362 Sum_probs=48.4
Q ss_pred eEecCCcEEEEEEEEec-CCCCCeeEEeeCCEE-----ecc--------CCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095 175 RCCDGDSVTFECQVQVV-PPNDHDISWFRNNRL-----IKL--------DSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 240 (325)
.+.+|+.++|.|.+... +. ..+.|++.... +.. ....................|.|.+++.+|+
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~--~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSS--YYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEeCCcCc--ceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 46789999999999865 33 78999984321 100 0001111111111111356899999999999
Q ss_pred eEEEEEEEeCCC
Q psy1095 241 GEFTCRVANELG 252 (325)
Q Consensus 241 G~Y~C~~~~~~~ 252 (325)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999987664
No 279
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.46 E-value=2.7e-06 Score=58.07 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=49.3
Q ss_pred eEEEEEEEEecC---CCeeEEeeCCee-----C---C--------C--CCcEEEEe--cCCeEEEEEccCCCCCCeEEEE
Q psy1095 82 TVRFQCSVTGQP---APWTSWSKDGKP-----A---T--------P--NARVTIRE--KEDLRFLEISEVTLEDAGLYTI 138 (325)
Q Consensus 82 ~v~l~C~~~~~p---~~~v~W~~~~~~-----~---~--------~--~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C 138 (325)
+|+|+|.....+ ...|.|+|.... + . . ..+..... .....+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986543 347899984211 1 0 0 02333332 2235679999999999999999
Q ss_pred EEEe-CCeeEEEEEEEEE
Q psy1095 139 KVEN-NYGSVEATARLEI 155 (325)
Q Consensus 139 ~~~~-~~~~~~~~~~l~v 155 (325)
.+.+ ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9976 5565667777766
No 280
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.46 E-value=1.4e-06 Score=57.12 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=47.3
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 253 (325)
+.|.|.+.+..|+ +.+.|++++..+.... .......+..+...+.|.+.....++.+.|+|.|.+....
T Consensus 2 ~~L~C~~~~~~P~-~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPA-ATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcC-CeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999887444 7999999998886322 1111122333445567777766667778999999987653
No 281
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.45 E-value=3.4e-06 Score=57.52 Aligned_cols=83 Identities=20% Similarity=0.386 Sum_probs=50.7
Q ss_pred cEEEEEEEEecCC-CCCeeEEeeCCE-----Eec---c--CC----CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095 181 SVTFECQVQVVPP-NDHDISWFRNNR-----LIK---L--DS----DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245 (325)
Q Consensus 181 ~v~l~C~~~~~~~-~~~~~~W~~~~~-----~~~---~--~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 245 (325)
++.|.|....... ....+.|++... .+. . +. .++.+...........+.|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 6899998864431 124899998321 111 0 00 0000111111112245789999999999999999
Q ss_pred EEEe-CCCcEEeEEEEEEE
Q psy1095 246 RVAN-ELGEVVTSACLIVD 263 (325)
Q Consensus 246 ~~~~-~~~~~~~~~~l~v~ 263 (325)
.+.+ +.|..+..+.|.||
T Consensus 82 ~v~~~p~g~~~~~~~L~V~ 100 (100)
T cd05888 82 RVITFPAGNFEAELVLTVW 100 (100)
T ss_pred EEEeCCCCCeeeEEEEEeC
Confidence 9987 66777777777764
No 282
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.44 E-value=1.1e-06 Score=61.26 Aligned_cols=77 Identities=22% Similarity=0.356 Sum_probs=49.4
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE--Eec----cC--------CCCceEEEecCCcceeEEEEEeCCCC
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR--LIK----LD--------SDMKPEVQVDSKENLVIARLKIPHVY 236 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~--~~~----~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~ 236 (325)
+....+.+|+.++|.|.+.+ +. ..+.|+|... .+. .. ......+..... ......|.|.+++
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~--~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~~~ 80 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GH--DNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP-SLTRSSLTIKSAE 80 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CC--CEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc-CCCccEEEECCCC
Confidence 34567889999999999976 44 7899998532 110 00 000001111110 1135689999999
Q ss_pred CCCCeEEEEEEEeCC
Q psy1095 237 PEDEGEFTCRVANEL 251 (325)
Q Consensus 237 ~~d~G~Y~C~~~~~~ 251 (325)
.+|+|.|.|.+.+..
T Consensus 81 ~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 81 PEDSAVYLCASSLGG 95 (110)
T ss_pred hhhCEEEEEEeeCCC
Confidence 999999999997653
No 283
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.44 E-value=1.8e-06 Score=59.70 Aligned_cols=77 Identities=18% Similarity=0.318 Sum_probs=49.0
Q ss_pred ecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EE---ecc-CC------CCceEEEecCCcceeEEEEEeCCCC
Q psy1095 169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RL---IKL-DS------DMKPEVQVDSKENLVIARLKIPHVY 236 (325)
Q Consensus 169 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~---~~~-~~------~~~~~~~~~~~~~~~~~~l~i~~~~ 236 (325)
..+....+.+|++++|.|.+.+... ...+.|+|.. .. +.. .. ..+..... ......|.|.+++
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~~~~-~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~~~ 79 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQSVS-SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG----SGTDFTLTISRVE 79 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECCCCC-CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec----cCCEEEEEECCCC
Confidence 3344567889999999999875541 2679999742 11 110 00 00111111 1134679999999
Q ss_pred CCCCeEEEEEEEeC
Q psy1095 237 PEDEGEFTCRVANE 250 (325)
Q Consensus 237 ~~d~G~Y~C~~~~~ 250 (325)
.+|+|.|.|.+.+.
T Consensus 80 ~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 80 PEDAAVYYCQQYGT 93 (106)
T ss_pred hHHCEEEEEEEeCC
Confidence 99999999998653
No 284
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.44 E-value=3.3e-06 Score=54.36 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=53.1
Q ss_pred eeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095 174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253 (325)
Q Consensus 174 ~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 253 (325)
..+..|++++|+|.....+.+.+.++|+..+........ . ...+|.+..+...|+|.++|.+.....+
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~------~------~~ktL~~~qv~~qdSG~WtC~V~~~~k~ 76 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN------Q------DKKTLNLVQLGPNDSGTWDCIVSVNSSE 76 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc------C------CccEEEeceeCcccCCEEEEEEEECceE
Confidence 357789999999999654442258999976654321110 1 1248999999999999999999876555
Q ss_pred EEeEEEEEE
Q psy1095 254 VVTSACLIV 262 (325)
Q Consensus 254 ~~~~~~l~v 262 (325)
....+.+.|
T Consensus 77 ~~~~~~V~V 85 (88)
T cd07694 77 KTLKLDIKV 85 (88)
T ss_pred EEEEeeEEE
Confidence 544545544
No 285
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.43 E-value=6.7e-06 Score=56.93 Aligned_cols=78 Identities=23% Similarity=0.390 Sum_probs=53.4
Q ss_pred CCeEEEEEEEEecC-----------CCeeEEeeC-----CeeCC---------------C--CCcEEEEe---cCCeEEE
Q psy1095 80 GDTVRFQCSVTGQP-----------APWTSWSKD-----GKPAT---------------P--NARVTIRE---KEDLRFL 123 (325)
Q Consensus 80 g~~v~l~C~~~~~p-----------~~~v~W~~~-----~~~~~---------------~--~~~~~~~~---~~~~~~l 123 (325)
|++++|+|.+.-.| ...|.|++- +.... . ..|..+.. ..+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78899999997433 238899874 11100 0 11333221 1245789
Q ss_pred EEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEEC
Q psy1095 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157 (325)
Q Consensus 124 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 157 (325)
.|.+++.+|+|.|.|.+.+........+.|.|..
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999988777777777777753
No 286
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.43 E-value=2e-06 Score=57.91 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=46.9
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 249 (325)
...+..|++|+|.|.... .. ..+.|+|++........ .........+.+.|.+++.+|+|.|.|....
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~--~~f~l~k~g~~~~~~~~------~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RF--DRFILYKEGRSKPVLHL------YEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCccCCCCeEEEEEecCC-CC--CEEEEEECCCCCCceec------ccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 456778999999997754 23 67999998865321100 0000011346899999999999999999753
No 287
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.43 E-value=4.9e-06 Score=55.68 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=46.9
Q ss_pred cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
.++..+|.|.+.|+.|.+..+.|.++|..+..+..........+..+...+.|.+.. .+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence 356689999999987766899999999987543222111112222344456666654 35569999998864
No 288
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.42 E-value=1.4e-05 Score=65.91 Aligned_cols=193 Identities=15% Similarity=0.222 Sum_probs=106.8
Q ss_pred CCchhcccceeeecccCCCCcccCCC----------CCCCCCCCCCcccCCCCCCCcccccccccccc--------cccC
Q psy1095 2 AIPEEKENSLSVKLTRPSGLMSGHST----------PRSTPRSTPPRSISPLSSRTFTPYSLNSAIRT--------RRLT 63 (325)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~--------~~~~ 63 (325)
+||-..|-.-+++.+-|+.-|...+. .....-++.|++|.-.|+|.|.-+..+...+. ...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~ 245 (490)
T PHA03271 166 AYPRPSELISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ 245 (490)
T ss_pred cCCCHHHHhHHhhcCCCCccccCCCCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe
Confidence 45655555556677777777766542 11122356699999999996654443322222 1222
Q ss_pred CCCeeEecCCceEecCCCeEEEEEEEEe-cCC--CeeEEeeCCeeCCCCCcEEE----Eec-CC---eEEEEEccCCCCC
Q psy1095 64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA--PWTSWSKDGKPATPNARVTI----REK-ED---LRFLEISEVTLED 132 (325)
Q Consensus 64 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~~----~~~-~~---~~~l~i~~~~~~d 132 (325)
-||.+.+.+.+ +.+|+...-.|.+.. +|. ..++||++|.++........ ... ++ ..+|.+.+...+.
T Consensus 246 RPPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~ 323 (490)
T PHA03271 246 RPASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDP 323 (490)
T ss_pred cCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCC
Confidence 67777776665 778999999999976 443 47899999988754321111 111 11 1233343333333
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEe
Q psy1095 133 AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207 (325)
Q Consensus 133 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~ 207 (325)
.=+.+|.+.-..+....+. .....|.+..+|.+... ...|+ ..|.+.=-|.. ..+.|.-++...
T Consensus 324 PPsLRCeV~W~rd~v~s~r--nAaatP~VY~~P~ISv~-----FedG~---AVCtA~CVP~g-V~lrWlVgD~p~ 387 (490)
T PHA03271 324 PPKISCLVAWKQGDMISTT--NATAIPTVYHHPRISLA-----FKDGY---AICTIECVPSG-ITVRWLVHDEPQ 387 (490)
T ss_pred CCCceEEEEEccCCceeee--ecccCCccccCCeEEEE-----EeCCE---EEEeccccCCC-cEEEEEecCCCC
Confidence 3478999854332111111 22333444445655433 33343 34555433432 789998876554
No 289
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.42 E-value=2.7e-06 Score=60.13 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=51.0
Q ss_pred ecCCceEecCCCeEEEEEEEEecC------CCeeEEeeCCee------C---CC--------CCcEEEE--ecCCeEEEE
Q psy1095 70 AVPHNKICDLGDTVRFQCSVTGQP------APWTSWSKDGKP------A---TP--------NARVTIR--EKEDLRFLE 124 (325)
Q Consensus 70 ~~~~~~~v~~g~~v~l~C~~~~~p------~~~v~W~~~~~~------~---~~--------~~~~~~~--~~~~~~~l~ 124 (325)
..|..+.+.+|++|+|.|...... ...+.||+.... + .. ..|+.+. ...+..+|.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 346667889999999999875321 245899985321 0 00 1244442 234567899
Q ss_pred EccCCCCCCeEEEEEEEeC
Q psy1095 125 ISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 125 i~~~~~~d~G~Y~C~~~~~ 143 (325)
|.+++.+|+|.|.|.+...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999988653
No 290
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.42 E-value=6.3e-06 Score=55.76 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=32.5
Q ss_pred eEEEEEeCCCCCCCCeEEEEEEEe-CCCcEEeEEEEEE
Q psy1095 226 VIARLKIPHVYPEDEGEFTCRVAN-ELGEVVTSACLIV 262 (325)
Q Consensus 226 ~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 262 (325)
..++|.|.+++.+|.|.|.|.+.+ +.|..+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 457899999999999999999998 6787888888876
No 291
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.41 E-value=5.1e-06 Score=61.47 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=59.2
Q ss_pred eEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCC----------C--CCcEE-EEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095 75 KICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPAT----------P--NARVT-IREKEDLRFLEISEVTLEDAGLYTIKV 140 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~----------~--~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 140 (325)
..|.+|++|+|.|... +...+.+.|+|....+. + ..++. +.......+|+|.+++.+|+|.|.|.+
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 4588999999999984 55677899999643221 1 12443 223334567999999999999999998
Q ss_pred Ee-CCe-eEEEEEEEEEECC
Q psy1095 141 EN-NYG-SVEATARLEIMDP 158 (325)
Q Consensus 141 ~~-~~~-~~~~~~~l~v~~~ 158 (325)
.. ..| ..+...-|.|...
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EecCCCCCceeEEEEEEEch
Confidence 53 334 5667777787654
No 292
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.41 E-value=1.4e-06 Score=59.11 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=50.7
Q ss_pred cCCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCC-------------CCceEEEecCCcceeEEEEEeCCCCCCCCeEE
Q psy1095 178 DGDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDS-------------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243 (325)
Q Consensus 178 ~g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 243 (325)
.|++|+|.|.... ... ..+.|++....+.... .++.+..... ....|.|.+++.+|+|.|
T Consensus 3 ~G~sVtL~c~~~~~~~~--~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~----~~~sL~I~~~~~~DsG~Y 76 (97)
T cd05775 3 LGGSVTLPLNIPDGTEI--ESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQ----NDYSLQISNLKMEDAGSY 76 (97)
T ss_pred cCCeEEEeCCCCCCcEE--EEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecC----CceeEEECCCchHHCEEE
Confidence 5999999998753 222 5799998654332111 1111111111 347899999999999999
Q ss_pred EEEEEeCCCcE-EeEEEEEE
Q psy1095 244 TCRVANELGEV-VTSACLIV 262 (325)
Q Consensus 244 ~C~~~~~~~~~-~~~~~l~v 262 (325)
.|.+....+.. ...+.|.|
T Consensus 77 ~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 77 RAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEEEcCCCCeEEEEEEEEe
Confidence 99999876544 44555544
No 293
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.41 E-value=5.2e-06 Score=54.35 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=42.7
Q ss_pred EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCC-e----EEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKED-L----RFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~----~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
+.|.|.+.+ +|.+.|+|+++++++...........++ . ..|.+.....+|...|+|++.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 689999987 5888999999999886543222222121 1 2344545556677899999987653
No 294
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.38 E-value=2.4e-06 Score=57.43 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=44.8
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccC--------------CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLD--------------SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 244 (325)
|++|+|.|....... ..+.|++........ ..+..+.... ....|.|.+++.+|+|.|.
T Consensus 1 G~~VtL~c~~~~~~~--~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~l~~~DsG~Y~ 73 (92)
T cd05741 1 GESVTLPVSNLPENL--QEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-----PNGSLLIQNLTKEDSGTYT 73 (92)
T ss_pred CCcEEEEcccCCCCC--EEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-----CCceEEEccCCchhcEEEE
Confidence 789999998865333 689999865332110 1111111111 2368999999999999999
Q ss_pred EEEEeCCC
Q psy1095 245 CRVANELG 252 (325)
Q Consensus 245 C~~~~~~~ 252 (325)
|.+....+
T Consensus 74 c~v~~~~~ 81 (92)
T cd05741 74 LQIISTNG 81 (92)
T ss_pred EEEEcCCC
Confidence 99988764
No 295
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.38 E-value=1e-05 Score=56.06 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEEE
Q psy1095 226 VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263 (325)
Q Consensus 226 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 263 (325)
....|.|.+++.+|+|.|.|.+.+........+.|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 46899999999999999999999988888888777773
No 296
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.37 E-value=3.8e-06 Score=55.04 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=47.2
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
+.|.|.+.++.|+ +.+.|+++|..+..... ......++..+...+.|.+.....+|...|+|.+.+...
T Consensus 2 ~~LtC~a~g~~P~-~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPA-ANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCC-CEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6899999887554 79999999988764321 111111222333456788877777778899999998764
No 297
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.36 E-value=4.9e-06 Score=54.46 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=41.4
Q ss_pred EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
+.|.|.+.+ +|.+.++|+++++++...........++ ...|.+.....++.+.|+|.+.+...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 689999976 5888999999999886433111111221 12344444445566799999987654
No 298
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.36 E-value=3.2e-06 Score=57.43 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=49.1
Q ss_pred CCeEEEEEEEEecCC-CeeEEeeCCee----C---CC----------CCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095 80 GDTVRFQCSVTGQPA-PWTSWSKDGKP----A---TP----------NARVTIR-EKEDLRFLEISEVTLEDAGLYTIKV 140 (325)
Q Consensus 80 g~~v~l~C~~~~~p~-~~v~W~~~~~~----~---~~----------~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~ 140 (325)
|++|+|.|....... -.+.|+|.... + .. ..++.+. ......+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999999754332 26899984321 0 00 1122221 1234567999999999999999998
Q ss_pred Ee-CCeeEEEEEEEEE
Q psy1095 141 EN-NYGSVEATARLEI 155 (325)
Q Consensus 141 ~~-~~~~~~~~~~l~v 155 (325)
.. ..|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 64 4456666666665
No 299
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.36 E-value=2.7e-06 Score=58.05 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=50.3
Q ss_pred ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec---CCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD---SKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
..|+.++|.|.+.|+.+....+.|+++|..+............+ +..+...+.|.+..-...+...|+|.+.+...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 34678999999999887768899999998875432111111111 23444556777755444556689999988653
No 300
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.35 E-value=1.2e-05 Score=53.55 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=47.7
Q ss_pred ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
..|...+|.|.+.++.|....+.|.++|..+. +..........+..+...+.|.+. ..+...|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence 34667799999999887778999999999876 432222222222233344556555 456668999998854
No 301
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.33 E-value=4.5e-06 Score=54.57 Aligned_cols=70 Identities=27% Similarity=0.414 Sum_probs=47.9
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 253 (325)
++|.|.+.++.|+ +.++|+++|..+....... .....+..+...+.|.+..-..++...|+|.|.+..-.
T Consensus 2 ~~LtC~a~gf~P~-~~itW~kng~~l~~~~~~~-~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPA-ADIRWFKNDKEIKDVKYLK-EEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCC-CEEEEEECCEECcCceeeE-eeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899999987665 8999999999875332111 11122223445677888766667777999999886543
No 302
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.32 E-value=1.6e-05 Score=53.37 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=48.8
Q ss_pred ecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy1095 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253 (325)
Q Consensus 177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 253 (325)
..|+.++|.|.+.++.+....+.|+++|..+.............+..+...+.|.+.. .+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence 3578899999999987776899999999987654211111111222344455666543 4556999999986543
No 303
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.32 E-value=4e-06 Score=57.11 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=49.3
Q ss_pred eEecCCCeEEEEEEEEe-cCCCeeEEeeCCeeC-------------CCCCcEEEEe--cCCeEEEEEccCCCCCCeEEEE
Q psy1095 75 KICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPA-------------TPNARVTIRE--KEDLRFLEISEVTLEDAGLYTI 138 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~-------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C 138 (325)
+.+.+|++|+|.|.... .....+.|+|..... ....++.+.. ......|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35778999999999764 345678999864211 1123444432 2446789999999999999999
Q ss_pred EEEeCC
Q psy1095 139 KVENNY 144 (325)
Q Consensus 139 ~~~~~~ 144 (325)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 986543
No 304
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.32 E-value=3.2e-06 Score=57.20 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=47.5
Q ss_pred cCCCeEEEEEEEEec-C-CCeeEEeeCCeeCCCCCc-EEEE-ecCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 78 DLGDTVRFQCSVTGQ-P-APWTSWSKDGKPATPNAR-VTIR-EKED----LRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 78 ~~g~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~-~~~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
..|+.+.|.|.+.|. | ...++|++++..+..... .... ..++ ...|.+......|.+.|+|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468999999999986 6 468999999998865542 1111 2222 12355655556699999999987654
No 305
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.31 E-value=7e-06 Score=55.72 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=51.1
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCE----Eec-c--------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNR----LIK-L--------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~----~~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 245 (325)
|++++|.|........ ..+.|++... .+. . ...+..+.... ......+.|.|.+++.+|+|.|.|
T Consensus 1 G~~vtL~C~~~~~~~~-~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLTLPEEV-LQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeCCCCee-EEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEE
Confidence 7899999987543321 3699998432 110 0 00111111110 111245789999999999999999
Q ss_pred EEE-eCCCcEEeEEEEEE
Q psy1095 246 RVA-NELGEVVTSACLIV 262 (325)
Q Consensus 246 ~~~-~~~~~~~~~~~l~v 262 (325)
.+. .+.|.....+.|+|
T Consensus 79 ~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 79 IFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEeCCCCCeeeEEEEEE
Confidence 976 46677777777776
No 306
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.30 E-value=4.5e-06 Score=58.53 Aligned_cols=79 Identities=23% Similarity=0.453 Sum_probs=49.0
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE-----Eec-cCCCCceEEE---------ecCCcceeEEEEEeCCC
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR-----LIK-LDSDMKPEVQ---------VDSKENLVIARLKIPHV 235 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~-----~~~-~~~~~~~~~~---------~~~~~~~~~~~l~i~~~ 235 (325)
+....+.+|+.+.|.|... .......+.|++... .+. .......... ...........|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp ESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred CCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 3456788999999999998 222226899998322 111 0000000000 00001124578999999
Q ss_pred CCCCCeEEEEEEEeC
Q psy1095 236 YPEDEGEFTCRVANE 250 (325)
Q Consensus 236 ~~~d~G~Y~C~~~~~ 250 (325)
+.+|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999999886
No 307
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.30 E-value=1.6e-05 Score=53.87 Aligned_cols=74 Identities=26% Similarity=0.459 Sum_probs=48.5
Q ss_pred eEEEEEEEEec-CC---CeeEEeeCCe----eC-----------CC--CCcEEEE-ecCCeEEEEEccCCCCCCeEEEEE
Q psy1095 82 TVRFQCSVTGQ-PA---PWTSWSKDGK----PA-----------TP--NARVTIR-EKEDLRFLEISEVTLEDAGLYTIK 139 (325)
Q Consensus 82 ~v~l~C~~~~~-p~---~~v~W~~~~~----~~-----------~~--~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~ 139 (325)
.|+|.|.+... |. ..|.|.+... .+ .. ..|.... ......+|.|.+++.+|+|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 58999998742 21 1689987421 11 00 1122222 122346799999999999999999
Q ss_pred EEe-CCeeEEEEEEEEE
Q psy1095 140 VEN-NYGSVEATARLEI 155 (325)
Q Consensus 140 ~~~-~~~~~~~~~~l~v 155 (325)
+.+ ..|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 988 5667777777776
No 308
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.30 E-value=7.3e-06 Score=53.60 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=42.5
Q ss_pred EEEEEEEEe-cCCCeeEEeeCCeeCCCCCcEEEEecCC-----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 83 VRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKED-----LRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 83 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
++|.|.+.+ +|...++|+|+|..+...........++ ...|.+.....++...|+|++.+...
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999977 6788999999999986543222222121 23455655555667799999987543
No 309
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.29 E-value=7.1e-06 Score=53.88 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=51.5
Q ss_pred cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
.++.++|.|.+.++.+....+.|++++..+.............+..+...+.|.+. ..+...|+|.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 37899999999998776689999999998865443332222234455556677776 4556689999988654
No 310
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.28 E-value=6.2e-06 Score=57.12 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=45.8
Q ss_pred EecCCCeEEEEEEEEec-CCCeeEEeeCCee---C--------C-----------CCCcEEEE--ecCCeEEEEEccCCC
Q psy1095 76 ICDLGDTVRFQCSVTGQ-PAPWTSWSKDGKP---A--------T-----------PNARVTIR--EKEDLRFLEISEVTL 130 (325)
Q Consensus 76 ~v~~g~~v~l~C~~~~~-p~~~v~W~~~~~~---~--------~-----------~~~~~~~~--~~~~~~~l~i~~~~~ 130 (325)
.+.+|++|+|.|...+. ....+.||+.... . . ...++... .......|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47789999999998653 3457999985321 0 0 01244332 223456799999999
Q ss_pred CCCeEEEEEEE
Q psy1095 131 EDAGLYTIKVE 141 (325)
Q Consensus 131 ~d~G~Y~C~~~ 141 (325)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999874
No 311
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.28 E-value=1e-05 Score=56.23 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=53.8
Q ss_pred EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEec-CCcceeEEEEEeCCCCCCC-CeEEEEEEEeCCCc
Q psy1095 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD-SKENLVIARLKIPHVYPED-EGEFTCRVANELGE 253 (325)
Q Consensus 176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 253 (325)
+..++.++|.|.+.++.|....+.|++++..+..+.......... +..+...+.|.+......+ ...|+|.+.+....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 335677999999999887667999999998876443211111122 2345566778887655444 45999999987554
Q ss_pred EE
Q psy1095 254 VV 255 (325)
Q Consensus 254 ~~ 255 (325)
..
T Consensus 95 ~~ 96 (115)
T cd05769 95 DT 96 (115)
T ss_pred cc
Confidence 44
No 312
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.27 E-value=2.5e-05 Score=54.08 Aligned_cols=76 Identities=22% Similarity=0.412 Sum_probs=50.4
Q ss_pred eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCe-EEEEEEEeCCC
Q psy1095 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG-EFTCRVANELG 252 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~ 252 (325)
....|+.++|.|.+.++.+....++|++||..+..... ......++..+...+.|.+..- ..|.| .|+|.+.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTL 93 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCC
Confidence 34568889999999998776689999999999864321 1111112224445567777654 34434 69999998653
No 313
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.27 E-value=5.4e-06 Score=57.00 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=46.3
Q ss_pred EecCCCeEEEEEEEEecCCCeeEEeeCCee----C------CC------------CCcEEEEecCCeEEEEEccCCCCCC
Q psy1095 76 ICDLGDTVRFQCSVTGQPAPWTSWSKDGKP----A------TP------------NARVTIREKEDLRFLEISEVTLEDA 133 (325)
Q Consensus 76 ~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~----~------~~------------~~~~~~~~~~~~~~l~i~~~~~~d~ 133 (325)
.+.+|++|+|.|.........+.||+.... . .. ..++..........|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 367899999999986544556899985321 0 00 1233333334566799999999999
Q ss_pred eEEEEEEE
Q psy1095 134 GLYTIKVE 141 (325)
Q Consensus 134 G~Y~C~~~ 141 (325)
|.|.|.+.
T Consensus 82 gtY~Ca~~ 89 (104)
T cd05720 82 GYYFCSVA 89 (104)
T ss_pred EEEEEEEc
Confidence 99999875
No 314
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.27 E-value=4.8e-06 Score=58.67 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=47.3
Q ss_pred cCeeEecCCcEEEEEEEEe--cCCCCCeeEEeeCC--EEe----ccCC-C--------CceEEEecCCcceeEEEEEeCC
Q psy1095 172 ENLRCCDGDSVTFECQVQV--VPPNDHDISWFRNN--RLI----KLDS-D--------MKPEVQVDSKENLVIARLKIPH 234 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~--~~~~~~~~~W~~~~--~~~----~~~~-~--------~~~~~~~~~~~~~~~~~l~i~~ 234 (325)
....+.+|+.++|.|.+.+ .+. ..+.|++.. ... .... . ....+............|.|.+
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~--~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFST--TYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccc--cEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 3456778999999999876 344 789999842 111 0000 0 0001111100011356899999
Q ss_pred CCCCCCeEEEEEEEe
Q psy1095 235 VYPEDEGEFTCRVAN 249 (325)
Q Consensus 235 ~~~~d~G~Y~C~~~~ 249 (325)
++.+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999999864
No 315
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.27 E-value=1.1e-05 Score=54.16 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=50.8
Q ss_pred CcEEEEEEEEecCCCCCeeEEeeCC----EEec-c----C----CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095 180 DSVTFECQVQVVPPNDHDISWFRNN----RLIK-L----D----SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246 (325)
Q Consensus 180 ~~v~l~C~~~~~~~~~~~~~W~~~~----~~~~-~----~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 246 (325)
++++|.|....... ...+.|.|-. ..+. . + ..+..+.... ......++|.|.+++.+|.|.|+|.
T Consensus 1 ~~vtL~C~~~~~~~-~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~ 78 (96)
T cd05887 1 KNVTLKCRIQVNET-ITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICK 78 (96)
T ss_pred CCEEEEEEecCCCc-EEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEE
Confidence 36899999864332 2589998732 1111 0 0 0111111111 0112357999999999999999999
Q ss_pred EE-eCCCcEEeEEEEEE
Q psy1095 247 VA-NELGEVVTSACLIV 262 (325)
Q Consensus 247 ~~-~~~~~~~~~~~l~v 262 (325)
+. .+.|+...+..|.|
T Consensus 79 v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 79 AVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEeCCCCCeeEEEEEEE
Confidence 75 57788888888876
No 316
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.25 E-value=0.00027 Score=59.88 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=76.6
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCC---eeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCC
Q psy1095 121 RFLEISEVTLEDAGLYTIKVENNY---GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDH 196 (325)
Q Consensus 121 ~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~ 196 (325)
..|.|..++..++|.|+-.+.+.. ......+.+.+... |.+... ...+.+|+...-.|.+..+ |+...
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~------PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~Sv 360 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKR------PNITVI--GDPVLLGNPYAAYCKVNKYYPPHSV 360 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecC------CCcccc--CCccccCCCceEEEEeeeecCCCce
Confidence 449999999999999987765322 23345555665554 444333 3357889999999998765 44456
Q ss_pred eeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCC--CeEEEEEEEeCCC
Q psy1095 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED--EGEFTCRVANELG 252 (325)
Q Consensus 197 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d--~G~Y~C~~~~~~~ 252 (325)
.++||+|+..+..............+..+..++|.+......| .-..+|.+.....
T Consensus 361 rlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RD 418 (566)
T PHA03269 361 IVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRD 418 (566)
T ss_pred EEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccC
Confidence 8999999888764221111111122233455677775433223 3478999876443
No 317
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.22 E-value=3.2e-05 Score=53.51 Aligned_cols=67 Identities=22% Similarity=0.386 Sum_probs=42.1
Q ss_pred ecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEEEEecCC-e----EEEEEccCCCCCCe-EEEEEEEeCC
Q psy1095 77 CDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVTIREKED-L----RFLEISEVTLEDAG-LYTIKVENNY 144 (325)
Q Consensus 77 v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~-~----~~l~i~~~~~~d~G-~Y~C~~~~~~ 144 (325)
...|+.++|.|.+.+ +|. ..++|++||+.+...........++ . ..|.+.. ...|.| .|+|.+.+..
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 557888999999988 464 5899999999986432211111121 1 2244443 444444 6999998764
No 318
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.22 E-value=1.9e-05 Score=52.98 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=47.5
Q ss_pred cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
.++.++|.|.+.++.+....+.|.++|.. ..+..........+..+...+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999998777789999999987 32211111111223345555677766543333558999998865
No 319
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.20 E-value=1.7e-05 Score=53.22 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=47.5
Q ss_pred EecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
+..+..++|.|.+.++.|....+.|.++|..+..+...... ..+++.+...+.|.+..-. ....|+|.+.+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~-~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEK-DKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccE-ecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 33466799999999987766899999999987543221111 1233344455667665432 2336999998843
No 320
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.20 E-value=9.6e-06 Score=55.20 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=44.8
Q ss_pred eEecCCcEEEEEEEEecCCCCCeeEEeeCCE--Ee---cc-------CCCCceEEEecCCcceeEEEEEeCCCCCCCCeE
Q psy1095 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNR--LI---KL-------DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 242 (325)
.+.+|++++|.|...........+.|++... .. .. ....+......+ ....|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~----~~~~L~I~~~~~~Dsg~ 77 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG----NTASLTISGAQTEDEAD 77 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC----CEEEEEECCCChhhCEE
Confidence 3568999999999865411115799998322 11 00 000111111111 45789999999999999
Q ss_pred EEEEEEe
Q psy1095 243 FTCRVAN 249 (325)
Q Consensus 243 Y~C~~~~ 249 (325)
|.|.+.+
T Consensus 78 Y~C~~~~ 84 (98)
T cd04984 78 YYCQVWD 84 (98)
T ss_pred EEEEEcc
Confidence 9999865
No 321
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.19 E-value=1.3e-05 Score=56.50 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=48.7
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--EEe---cc-----CCCCceEEEecCCcceeEEEEEeCCCCCCCC
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--RLI---KL-----DSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~~~---~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 240 (325)
+....+..|++|+|.|........ ..+.|++.. ..+ .. ......+.............|.|.+++.+|+
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~-~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTN-YYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCc-eEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 345678899999999998653221 679999832 111 00 0010111111111112357899999999999
Q ss_pred eEEEEEEEeC
Q psy1095 241 GEFTCRVANE 250 (325)
Q Consensus 241 G~Y~C~~~~~ 250 (325)
|.|.|.+...
T Consensus 85 g~Y~C~~~~~ 94 (116)
T cd07706 85 AKYFCALSTL 94 (116)
T ss_pred EEEEEEEECC
Confidence 9999999753
No 322
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.18 E-value=2.2e-05 Score=52.64 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=50.0
Q ss_pred CeEEEEEEEEec-CCCeeEEeeCCe----eCC-----------C--CCcEEEE-ecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095 81 DTVRFQCSVTGQ-PAPWTSWSKDGK----PAT-----------P--NARVTIR-EKEDLRFLEISEVTLEDAGLYTIKVE 141 (325)
Q Consensus 81 ~~v~l~C~~~~~-p~~~v~W~~~~~----~~~-----------~--~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~ 141 (325)
++|+|.|..... ....|.|.|... .+. . ..|.... ......+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 468999998642 334789987421 110 0 1233332 12234689999999999999999985
Q ss_pred -eCCeeEEEEEEEEE
Q psy1095 142 -NNYGSVEATARLEI 155 (325)
Q Consensus 142 -~~~~~~~~~~~l~v 155 (325)
...|...++..|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 56677888888776
No 323
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.18 E-value=1.7e-05 Score=56.02 Aligned_cols=79 Identities=16% Similarity=0.290 Sum_probs=48.8
Q ss_pred cCeeEecCCcEEEEEEEEecC----CCCCeeEEeeCCEE------ec-cC------CCCceEEEecCCcceeEEEEEeCC
Q psy1095 172 ENLRCCDGDSVTFECQVQVVP----PNDHDISWFRNNRL------IK-LD------SDMKPEVQVDSKENLVIARLKIPH 234 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~----~~~~~~~W~~~~~~------~~-~~------~~~~~~~~~~~~~~~~~~~l~i~~ 234 (325)
....+.+|+.|+|.|...... .....+.|++.... +. .. ..+..+....++.....+.|.|.+
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~ 86 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD 86 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence 456788999999999875322 11256899985321 11 00 111111112112233567899999
Q ss_pred CCCCCCeEEEEEEEeC
Q psy1095 235 VYPEDEGEFTCRVANE 250 (325)
Q Consensus 235 ~~~~d~G~Y~C~~~~~ 250 (325)
++.+|+|.|.|.+...
T Consensus 87 l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 87 AQPEDSGKYFFRVELG 102 (119)
T ss_pred CChhhCeEEEEEEEcC
Confidence 9999999999988664
No 324
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.17 E-value=3e-05 Score=52.07 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=45.7
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEec-CCC-eeEEeeCCeeCCCCC-cEEEEec-CCeE-EEEEccCCCCCCeEEEEE
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQ-PAP-WTSWSKDGKPATPNA-RVTIREK-EDLR-FLEISEVTLEDAGLYTIK 139 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~-~~~~~~~-~~~~-~l~i~~~~~~d~G~Y~C~ 139 (325)
||.+.+.+.... ++.++|.|.+.|+ |.. .++|++++..+.... ....... ++.. ......+...+.+.|+|.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 566655544332 7889999999994 544 889999986432221 1111112 2211 112223444578899999
Q ss_pred EEeCCe
Q psy1095 140 VENNYG 145 (325)
Q Consensus 140 ~~~~~~ 145 (325)
+.+...
T Consensus 79 V~H~~~ 84 (93)
T cd07698 79 VEHSGL 84 (93)
T ss_pred EEeCCC
Confidence 977543
No 325
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.17 E-value=1.3e-05 Score=56.40 Aligned_cols=72 Identities=17% Similarity=0.340 Sum_probs=49.6
Q ss_pred cCCceEecCCCeEEEEEEEEecC--CCeeEEeeCCe---e--C---C-----------CCCcEEEEecC--CeEEEEEcc
Q psy1095 71 VPHNKICDLGDTVRFQCSVTGQP--APWTSWSKDGK---P--A---T-----------PNARVTIREKE--DLRFLEISE 127 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~~~~p--~~~v~W~~~~~---~--~---~-----------~~~~~~~~~~~--~~~~l~i~~ 127 (325)
.|....+.+|++|+|.|...... ...+.|||... + + . ...++...... ....|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 46677789999999999876432 45689998421 1 0 0 01344444332 335799999
Q ss_pred CCCCCCeEEEEEEEe
Q psy1095 128 VTLEDAGLYTIKVEN 142 (325)
Q Consensus 128 ~~~~d~G~Y~C~~~~ 142 (325)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998754
No 326
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.15 E-value=0.0005 Score=58.01 Aligned_cols=124 Identities=17% Similarity=0.240 Sum_probs=77.4
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCeeE--EEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCe
Q psy1095 121 RFLEISEVTLEDAGLYTIKVENNYGSV--EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHD 197 (325)
Q Consensus 121 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~ 197 (325)
..|.|..++...+|.|+-...+..+.. ...+.+..... |.+... ...+.+|+...-.|.+..+ |+....
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~------Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~ 269 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNA------PLVDLS--VHPSLKGENYRAVCVVASYFPHSSVK 269 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecC------Cccccc--CCccccCCCceEEEEeeeecCCCceE
Confidence 348999999999999987765543332 23333333443 444443 3357889999999998765 444568
Q ss_pred eEEeeCCEEeccCCCCceEEE-ecCCcceeEEEEEeCCCCC-CCCeEEEEEEEeCCC
Q psy1095 198 ISWFRNNRLIKLDSDMKPEVQ-VDSKENLVIARLKIPHVYP-EDEGEFTCRVANELG 252 (325)
Q Consensus 198 ~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~ 252 (325)
++||+|+.++........... .........++|.+..... +..=..+|.+.....
T Consensus 270 ~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd 326 (486)
T PHA03273 270 LRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRD 326 (486)
T ss_pred EEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccC
Confidence 999999998873222222111 1122334556777776543 344489999876443
No 327
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.14 E-value=2.9e-05 Score=51.76 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=47.3
Q ss_pred eeEecCCceEecCCCeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEE-EEecCC----eEEEEEccCCCCCCeEEEEEE
Q psy1095 67 RFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVT-IREKED----LRFLEISEVTLEDAGLYTIKV 140 (325)
Q Consensus 67 ~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~C~~ 140 (325)
.|...+..... .|+.+.|.|.+. ++|.|.++|+.++..+....... ....++ ...|.+..-..++...++|.+
T Consensus 2 ~I~~~~~~~~~-~~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~ 80 (89)
T PF08205_consen 2 EITPNPSLLEG-EGEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRA 80 (89)
T ss_dssp EEEEECSEEES-STEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEE
T ss_pred EeeCCCeeEcc-cceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEE
Confidence 44444433323 278999999875 58999999999987762111111 111121 234666655556777999999
Q ss_pred EeCCe
Q psy1095 141 ENNYG 145 (325)
Q Consensus 141 ~~~~~ 145 (325)
.+...
T Consensus 81 ~~~~~ 85 (89)
T PF08205_consen 81 SHPAL 85 (89)
T ss_dssp EETTC
T ss_pred ECCcc
Confidence 88654
No 328
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.13 E-value=1.8e-05 Score=53.84 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=46.7
Q ss_pred eEecCCcEEEEEEEEecCCCCCeeEEeeCCEE-----ecc----CCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRL-----IKL----DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 245 (325)
.+.+|++++|.|....... ...+.|++.... +.. ......+.............|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~~~-~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNR-SYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCCCCC-CcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 4678999999998764322 267899985321 100 000001111111111245789999999999999999
Q ss_pred EEEeCC
Q psy1095 246 RVANEL 251 (325)
Q Consensus 246 ~~~~~~ 251 (325)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987654
No 329
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.12 E-value=1.7e-05 Score=53.43 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=49.1
Q ss_pred eEecCCcEEEEEEEEec-CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 175 RCCDGDSVTFECQVQVV-PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
.+..|+.++|.|.+.++ .+....+.|.|++........ .......+..+...+.|.+..-...+.-.|+|.+.+...
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~-~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASI-QPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEe-cccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 35568899999999999 665689999998753321111 111112233444556777765544445589999988654
No 330
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.08 E-value=8.1e-05 Score=49.95 Aligned_cols=69 Identities=25% Similarity=0.314 Sum_probs=41.7
Q ss_pred ecCCCeEEEEEEEEe-cCCC-eeEEeeCCeeCCCCC-cEEEEecCC-eE-EEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 77 CDLGDTVRFQCSVTG-QPAP-WTSWSKDGKPATPNA-RVTIREKED-LR-FLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 77 v~~g~~v~l~C~~~~-~p~~-~v~W~~~~~~~~~~~-~~~~~~~~~-~~-~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
+.+|+.++|.|.+.| +|.. .++|+++|+.+.... .......++ .. ......+...+...|+|.+.+...
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 346889999999998 4544 789999999876531 111111221 11 111122334556699999987543
No 331
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.08 E-value=2.7e-05 Score=57.74 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=56.5
Q ss_pred CeeEecCCcEEEEEEEE-ecCCCCCeeEEeeCCEEec-cCCCCceEEE--ecCCc-----ceeEEEEEeCCCCCCCCeEE
Q psy1095 173 NLRCCDGDSVTFECQVQ-VVPPNDHDISWFRNNRLIK-LDSDMKPEVQ--VDSKE-----NLVIARLKIPHVYPEDEGEF 243 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~-~~~~~~~~~~--~~~~~-----~~~~~~l~i~~~~~~d~G~Y 243 (325)
...|.+|++++|.|... +... +.+.|+|....+. .... ..... ..++. ....+.|.|.+++.+|+|.|
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~--~qVtWkK~~~~IatY~~~-g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY 100 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNS--ILITWKKNNKTIAGYGPC-GPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCY 100 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCcc--ceEEEEEcCCCEEEEecC-CcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEE
Confidence 45678899999999974 3333 7899999643221 1100 00000 00111 11457899999999999999
Q ss_pred EEEEEe-CCC-cEEeEEEEEEE
Q psy1095 244 TCRVAN-ELG-EVVTSACLIVD 263 (325)
Q Consensus 244 ~C~~~~-~~~-~~~~~~~l~v~ 263 (325)
.|...- +.| ..+....|.|.
T Consensus 101 ~C~F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 101 TCIFNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EEEEEecCCCCCceeEEEEEEE
Confidence 998764 456 67777788874
No 332
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.07 E-value=2.4e-05 Score=54.15 Aligned_cols=72 Identities=24% Similarity=0.398 Sum_probs=44.2
Q ss_pred eEecCCcEEEEEEEEecCCCCCeeEEeeCCEE---------ec-cCCC----------CceEEEecCCcceeEEEEEeCC
Q psy1095 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRL---------IK-LDSD----------MKPEVQVDSKENLVIARLKIPH 234 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~---------~~-~~~~----------~~~~~~~~~~~~~~~~~l~i~~ 234 (325)
.+.+|+.++|.|.+...... ..+.|++.... +. .... .+..... ........|.|.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~-~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~~ 78 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISEN-TRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV--TSDSSRYRLHINR 78 (107)
T ss_pred EEcCCCCEEEEEEEecCCCC-CeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE--ECCCCEEEEEECC
Confidence 46789999999998753321 57999984321 00 0000 0111000 0011346799999
Q ss_pred CCCCCCeEEEEEEEe
Q psy1095 235 VYPEDEGEFTCRVAN 249 (325)
Q Consensus 235 ~~~~d~G~Y~C~~~~ 249 (325)
++.+|+|.|.|...+
T Consensus 79 ~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 79 VKPEDSGTYFCMTVG 93 (107)
T ss_pred CCHHHCEEEEEeEcC
Confidence 999999999999753
No 333
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.07 E-value=0.00097 Score=55.83 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=78.8
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCe--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCee
Q psy1095 122 FLEISEVTLEDAGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHDI 198 (325)
Q Consensus 122 ~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~~ 198 (325)
.|.|..++...+|.|+-...+..+ ...+.+.+..+.. |.+...+ ..+..|+...-.|.+..+ |+....+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~------Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~l 254 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRR------PSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAF 254 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecC------CcccccC--CccccCCCceEEEEeeeecCCCceEE
Confidence 389999999999999998766444 2334455555443 4444333 347789999999998665 4445689
Q ss_pred EEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCC-CCeEEEEEEEeCCCc
Q psy1095 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE-DEGEFTCRVANELGE 253 (325)
Q Consensus 199 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~ 253 (325)
+||+|+..+..............+.....+++.+...... ..=..+|.+......
T Consensus 255 rWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~ 310 (466)
T PHA03270 255 RWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDS 310 (466)
T ss_pred EEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCC
Confidence 9999999875433222222233333445566766654332 223889998765443
No 334
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.06 E-value=3.2e-05 Score=51.56 Aligned_cols=73 Identities=19% Similarity=0.370 Sum_probs=47.4
Q ss_pred CCcEEEEEEEEe-cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095 179 GDSVTFECQVQV-VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254 (325)
Q Consensus 179 g~~v~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 254 (325)
|+.+.|.|.+.+ +|+ +.+.|+.++..+... .........+......+.|.+..-..++...++|.|.+.....
T Consensus 14 ~~~~~~~C~s~~~~P~--~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPP--PQITWYLDGGPVVAS-NTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS---EEEEEEETTCEECEE-EEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECC--eEEEEEECCCceeee-eeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 679999998765 555 899999998877111 0011111222333455788887666667779999999876543
No 335
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.05 E-value=3.5e-05 Score=48.38 Aligned_cols=62 Identities=35% Similarity=0.583 Sum_probs=45.2
Q ss_pred EEEEEEEEecCCCeeEEeeCCeeCCCCCcE----EEEecCCeEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095 83 VRFQCSVTGQPAPWTSWSKDGKPATPNARV----TIREKEDLRFLEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 83 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
+.|.|.+.+.+...+.|++++......... ..........|.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999988778899999988766443211 11112334679999999999999999997754
No 336
>PHA03376 BARF1; Provisional
Probab=98.05 E-value=1e-05 Score=59.62 Aligned_cols=74 Identities=7% Similarity=0.016 Sum_probs=50.9
Q ss_pred CCCCCCCcccCCCCCCCcccccccccccccccC-----CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCe
Q psy1095 31 TPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLT-----SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK 104 (325)
Q Consensus 31 ~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~-----~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~ 104 (325)
..-+|.|.+++++|.|.|+|..+.......... .|-.+.+..+......-+...+.|.+.|+|.|.++|.-+..
T Consensus 85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 345677999999999999999977665443333 23334443322222335668899998889999999997643
No 337
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.04 E-value=6.3e-05 Score=47.13 Aligned_cols=66 Identities=27% Similarity=0.476 Sum_probs=46.1
Q ss_pred EEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 182 v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
+.|.|.+.+.+. ..+.|++++......... ..............|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPP--PTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCC--CcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999987444 889999988765433221 001112223356789999999999999999998865
No 338
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.03 E-value=6.1e-05 Score=50.56 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=46.4
Q ss_pred CcEEEEEEEEecCCCCCeeEEeeCCE----Eecc-----C----CCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095 180 DSVTFECQVQVVPPNDHDISWFRNNR----LIKL-----D----SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246 (325)
Q Consensus 180 ~~v~l~C~~~~~~~~~~~~~W~~~~~----~~~~-----~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 246 (325)
+.++|.|....... ...+.|.|-.. .+.. + ..+..+....+ ......+|.|.+++.+|.|.|+|.
T Consensus 1 ~~vtL~C~~~~~~~-~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~ 78 (96)
T cd05889 1 EKMKLECVYPKTGV-LIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCS 78 (96)
T ss_pred CCEEEEeEcCCCCc-EEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEE
Confidence 36889998853222 26788988422 1110 0 11111111111 011347899999999999999999
Q ss_pred EEe-CCCcEEeEEEEE
Q psy1095 247 VAN-ELGEVVTSACLI 261 (325)
Q Consensus 247 ~~~-~~~~~~~~~~l~ 261 (325)
+.. +.|.....+.|.
T Consensus 79 ~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 79 LVTYPQGSWEKVIEVV 94 (96)
T ss_pred EEeCCCCCeEEEEEEE
Confidence 865 566666555543
No 339
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.02 E-value=2.4e-05 Score=52.52 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=48.8
Q ss_pred EecCCcEEEEEEEEecC-CCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 176 CCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 176 v~~g~~v~l~C~~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
...+..++|.|.+.++. +.+..|.|.+++.. . . .........+..+...+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-A-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-c-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 44678899999999977 65689999999875 1 1 11111112233455667787775444444579999988654
No 340
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.02 E-value=4.6e-05 Score=51.87 Aligned_cols=80 Identities=15% Similarity=0.354 Sum_probs=48.0
Q ss_pred CCeeEecCC-ceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCc-EE-EEecCCe----EEEEEccCCCCCCeE
Q psy1095 65 SPRFYAVPH-NKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNAR-VT-IREKEDL----RFLEISEVTLEDAGL 135 (325)
Q Consensus 65 ~p~~~~~~~-~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~-~~~~~~~----~~l~i~~~~~~d~G~ 135 (325)
||.+.+.+. ......++.++|.|.+.| +| ...|+|+++|+.+..... .. ....++. ..|.+......+...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 455544433 334556788999999988 55 567899999998853211 01 1111221 224444443345679
Q ss_pred EEEEEEeCC
Q psy1095 136 YTIKVENNY 144 (325)
Q Consensus 136 Y~C~~~~~~ 144 (325)
|+|.+.+..
T Consensus 81 ~sC~V~H~~ 89 (100)
T cd07699 81 YTCEVTHEG 89 (100)
T ss_pred EEEEEEecC
Confidence 999997654
No 341
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.01 E-value=0.00042 Score=58.74 Aligned_cols=165 Identities=17% Similarity=0.160 Sum_probs=90.5
Q ss_pred CCCCCCcccCCCCCCCcccccccccc--------cccccCCCCeeEecCCceEecCCCeEEEEEEEEe-cCC--CeeEEe
Q psy1095 32 PRSTPPRSISPLSSRTFTPYSLNSAI--------RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPA--PWTSWS 100 (325)
Q Consensus 32 ~~~l~i~~v~~~d~G~Y~c~~~~~~~--------~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p~--~~v~W~ 100 (325)
.-.|.|+++...++|.|+=...+... ..+.+..+|.+.+.+.+ +.+|+...-.|.+.. +|. ..+.||
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf 365 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWT 365 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEE
Confidence 35688999999999999744322211 12333467777776665 778999999999976 443 478999
Q ss_pred eCCeeCCCCC---cEEEEecCC---eEEEEEccCCCCC--CeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCc
Q psy1095 101 KDGKPATPNA---RVTIREKED---LRFLEISEVTLED--AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLE 172 (325)
Q Consensus 101 ~~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d--~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~ 172 (325)
+|+.++.... .+....++. .++|.+......| --+.+|.+.-..+... ...+.-...+.+..+|.+...
T Consensus 366 ~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS-~tRfnAaatP~VY~~PtISm~-- 442 (566)
T PHA03269 366 SNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVS-HMKYSAAVTPDVYPFPNVSIE-- 442 (566)
T ss_pred eCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCch-heecccccCCccccCCeEEEE--
Confidence 9998887421 112222221 1233332221222 2366999853322111 111122233333444554433
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEe
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~ 207 (325)
...|. ..|.+.=-|.....+.|+-++...
T Consensus 443 ---FedG~---AVCtA~CVP~~~V~l~WlVgD~p~ 471 (566)
T PHA03269 443 ---IIDGH---IVCLAKCVPRGVVHFNWWINDIPI 471 (566)
T ss_pred ---EeCCE---EEEecccccCCCceEEEEecCCCC
Confidence 33343 345554333332589998876653
No 342
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.97 E-value=0.0074 Score=50.45 Aligned_cols=125 Identities=15% Similarity=0.254 Sum_probs=76.2
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCe--eEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEec-CCCCCe
Q psy1095 121 RFLEISEVTLEDAGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV-PPNDHD 197 (325)
Q Consensus 121 ~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~~ 197 (325)
-.+.|.++...++|.|.-...+... ...+.+.+.+... +|.+...+ ..+..|+...-.|.+..+ |+....
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~R-----PPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~Svr 279 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQR-----PASVDVLA--PPVLSGENYKASCIVRHFYPPGSVY 279 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEec-----CCCccccC--CccccCCCceEEEEeeeecCCCceE
Confidence 3588999999999966554444332 2344555555543 34444433 346789999999998765 444568
Q ss_pred eEEeeCCEEeccCCCCceEE--EecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 198 ISWFRNNRLIKLDSDMKPEV--QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 198 ~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
++|+++|............. ..........++|.+.+...+..=..+|.+.....
T Consensus 280 lrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 280 VSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred EEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 99999998875443222211 11222334456676765544445589999876544
No 343
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.93 E-value=0.00019 Score=48.05 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=44.1
Q ss_pred CCeeEecCCceEecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCc-EEEEec-CCe----EEEEEccCCCCCCeEE
Q psy1095 65 SPRFYAVPHNKICDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNAR-VTIREK-EDL----RFLEISEVTLEDAGLY 136 (325)
Q Consensus 65 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~-~~~----~~l~i~~~~~~d~G~Y 136 (325)
||.+.+.+... ...++..+|.|.+.| +| ...++|.++|..+..... ...... ++. ..|.+ ...+...|
T Consensus 1 ~P~V~v~~~~~-~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~y 76 (94)
T cd05767 1 PPEVTVFSLKP-VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIY 76 (94)
T ss_pred CCEEEEEeCCc-ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeE
Confidence 45554333221 334666899999999 45 357899999998754321 111112 121 22433 34456699
Q ss_pred EEEEEeCC
Q psy1095 137 TIKVENNY 144 (325)
Q Consensus 137 ~C~~~~~~ 144 (325)
+|.+....
T Consensus 77 tC~V~H~~ 84 (94)
T cd05767 77 SCIVEHWG 84 (94)
T ss_pred EEEEEeCC
Confidence 99997654
No 344
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.93 E-value=0.00013 Score=48.98 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=44.7
Q ss_pred CeEEEEEEEEe-cCCCeeEEeeCCe----eC-----------CC--CCcEEEEe-cCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095 81 DTVRFQCSVTG-QPAPWTSWSKDGK----PA-----------TP--NARVTIRE-KEDLRFLEISEVTLEDAGLYTIKVE 141 (325)
Q Consensus 81 ~~v~l~C~~~~-~p~~~v~W~~~~~----~~-----------~~--~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~ 141 (325)
++++|.|.... .....|+|.|... .+ .. ..|..... .....+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46899999853 2345678987421 11 00 12332221 1234679999999999999999996
Q ss_pred e-CCeeEEEEEE
Q psy1095 142 N-NYGSVEATAR 152 (325)
Q Consensus 142 ~-~~~~~~~~~~ 152 (325)
. ..|...+.+.
T Consensus 81 t~P~g~~~~~i~ 92 (96)
T cd05889 81 TYPQGSWEKVIE 92 (96)
T ss_pred eCCCCCeEEEEE
Confidence 5 4555555444
No 345
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.92 E-value=4.9e-05 Score=49.53 Aligned_cols=59 Identities=29% Similarity=0.494 Sum_probs=40.0
Q ss_pred eEEEEEEEEecCCC--eeEEeeCCe--e---C-------------CCCCcEEEEec--CCeEEEEEccCCCCCCeEEEEE
Q psy1095 82 TVRFQCSVTGQPAP--WTSWSKDGK--P---A-------------TPNARVTIREK--EDLRFLEISEVTLEDAGLYTIK 139 (325)
Q Consensus 82 ~v~l~C~~~~~p~~--~v~W~~~~~--~---~-------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~ 139 (325)
+|.|.|.+.....+ .+.|++... . + ....++..... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998764443 789998531 0 0 01234444433 4567899999999999999996
Q ss_pred E
Q psy1095 140 V 140 (325)
Q Consensus 140 ~ 140 (325)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 346
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.92 E-value=7.1e-05 Score=52.63 Aligned_cols=79 Identities=16% Similarity=0.320 Sum_probs=46.1
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCC--E-E--ec-c---CC------CCceEEEecCCcceeEEEEEeCCC
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN--R-L--IK-L---DS------DMKPEVQVDSKENLVIARLKIPHV 235 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~--~-~--~~-~---~~------~~~~~~~~~~~~~~~~~~l~i~~~ 235 (325)
+....+.+|+.++|.|...........+.|++.. . + +. . .. .....+............|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 3456788999999999876433112569999832 1 1 10 0 00 000011111000012346999999
Q ss_pred CCCCCeEEEEEEEe
Q psy1095 236 YPEDEGEFTCRVAN 249 (325)
Q Consensus 236 ~~~d~G~Y~C~~~~ 249 (325)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998764
No 347
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.91 E-value=0.00018 Score=48.14 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=41.4
Q ss_pred CCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCC-cE-EEEecCCe----EEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095 79 LGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNA-RV-TIREKEDL----RFLEISEVTLEDAGLYTIKVENNYGS 146 (325)
Q Consensus 79 ~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~-~~-~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~ 146 (325)
.++.++|.|.+.| +|. ..|+|+++|..+.... .. .....++. ..|.+......+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4567999999998 454 5789999998863321 11 11112221 22444433334567999999876543
No 348
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.90 E-value=0.00091 Score=56.53 Aligned_cols=161 Identities=19% Similarity=0.171 Sum_probs=90.6
Q ss_pred CCCCCcccCCCCCCCcccccccccc-------cccccCCCCeeEecCCceEecCCCeEEEEEEEEe-cC--CCeeEEeeC
Q psy1095 33 RSTPPRSISPLSSRTFTPYSLNSAI-------RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QP--APWTSWSKD 102 (325)
Q Consensus 33 ~~l~i~~v~~~d~G~Y~c~~~~~~~-------~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p--~~~v~W~~~ 102 (325)
..|.|+.+...++|.|+=...+.++ ..+....+|.+.+.+.+ +.+|+...-.|.+.. +| ...+.||+|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4588999999999999844323221 12233478888777665 788999999999976 44 347899999
Q ss_pred CeeCCCCC----cEEEEecCC---eEEEEEccCCC-CCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCe
Q psy1095 103 GKPATPNA----RVTIREKED---LRFLEISEVTL-EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENL 174 (325)
Q Consensus 103 ~~~~~~~~----~~~~~~~~~---~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~ 174 (325)
+.++.... ......++. .++|.+..... +..=+.+|.+.-..... ....+.-...|.+..+|.+...
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~v-S~~RfsAt~~P~Vy~~P~Is~~---- 350 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEV-SFARIAKAGTPSVFVAPTVSVT---- 350 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCc-ceeeccccccCccccCCeEEEE----
Confidence 99887321 111111221 23344444322 33347899985332221 1111122233333444555433
Q ss_pred eEecCCcEEEEEEEEecCCCCCeeEEeeCC
Q psy1095 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNN 204 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~ 204 (325)
...|+ ..|.+.=-|.....+.|+-++
T Consensus 351 -F~~G~---AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 351 -VEDGD---AVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred -EeCCE---EEEecccccCCCeeEEEEccC
Confidence 33332 345554333322789998766
No 349
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.87 E-value=0.001 Score=55.68 Aligned_cols=162 Identities=13% Similarity=0.160 Sum_probs=90.8
Q ss_pred CCCCcccCCCCCCCcccccccccc-------cccccCCCCeeEecCCceEecCCCeEEEEEEEEe-cC--CCeeEEeeCC
Q psy1095 34 STPPRSISPLSSRTFTPYSLNSAI-------RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QP--APWTSWSKDG 103 (325)
Q Consensus 34 ~l~i~~v~~~d~G~Y~c~~~~~~~-------~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~p--~~~v~W~~~~ 103 (325)
.|.|+.+....+|.|+=...+... ..+....+|.+.+.+.+ +.+|+...-.|.+.. +| ...+.||+|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 478999999999999966433222 22344477887777665 778999999999976 44 3478999999
Q ss_pred eeCCCCCcEE--EEe-cCC---eEEEEEccCCCC-CCeEEEEEEEeCCeeE-EEEEEEEEECCCcccCCCeeeecCcCee
Q psy1095 104 KPATPNARVT--IRE-KED---LRFLEISEVTLE-DAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLR 175 (325)
Q Consensus 104 ~~~~~~~~~~--~~~-~~~---~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~~ 175 (325)
.++....... ... .++ .+++++...... ..=+.+|.+.-..... ... +.-...|.+..+|.+...
T Consensus 261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR--~nAa~~P~VY~~P~Isv~----- 333 (466)
T PHA03270 261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSR--RNATGAPTVLPRPTIEME----- 333 (466)
T ss_pred ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCcccee--ecccccCccccCCeEEEE-----
Confidence 9885422111 111 111 122333222211 1137799985332211 111 122233333444555433
Q ss_pred EecCCcEEEEEEEEecCCCCCeeEEeeCCEEec
Q psy1095 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK 208 (325)
Q Consensus 176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~ 208 (325)
...| ...|.+.=-|.. ..+.|.-++....
T Consensus 334 F~dG---~AVCtA~CVPeg-V~l~W~V~D~~~p 362 (466)
T PHA03270 334 FGGD---EAVCTAACVPEG-VTLAWLLGADPAP 362 (466)
T ss_pred EeCC---EEEEeccccCCC-CEEEEEecCCCCC
Confidence 2233 334655434433 7899988765543
No 350
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.85 E-value=0.00028 Score=47.06 Aligned_cols=68 Identities=21% Similarity=0.264 Sum_probs=41.5
Q ss_pred ecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCcEEEEec-CCeEE-EEEccCCCCCCeEEEEEEEeCC
Q psy1095 77 CDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNARVTIREK-EDLRF-LEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 77 v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~-l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
+..|+..+|.|.+.| +| ...++|+++|..+........... +.... .....+...+...|+|.+....
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 345777899999998 44 447799999998762211112222 22111 1122345667779999997753
No 351
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.83 E-value=0.00026 Score=45.36 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=39.1
Q ss_pred EEEEEEEEec-CC-CeeEEeeCCeeCCCCCc-EEEEe-cCC----eEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095 83 VRFQCSVTGQ-PA-PWTSWSKDGKPATPNAR-VTIRE-KED----LRFLEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 83 v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
++|.|.+.+. |. ..++|+|+++++..... ..... .++ ...|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999884 54 58999999987543211 11111 122 2235555555667789999997653
No 352
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.80 E-value=0.00011 Score=50.53 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=43.7
Q ss_pred EecCCcEEEEEEEEecCCCCCeeEEeeCCEE-------ec-cCC--CC--------ceEEEecCCcceeEEEEEeCCCCC
Q psy1095 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRL-------IK-LDS--DM--------KPEVQVDSKENLVIARLKIPHVYP 237 (325)
Q Consensus 176 v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~-------~~-~~~--~~--------~~~~~~~~~~~~~~~~l~i~~~~~ 237 (325)
+.+|++|+|.|....... ..+.|++.... +. ... .. ....... .......|.|.+++.
T Consensus 3 v~~G~~vtL~C~~~~~~~--~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~--~~~~~~~L~I~~~~~ 78 (104)
T cd05720 3 AELGQKVELKCEVLNSSP--TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS--RSSNSFVLTLKNFQK 78 (104)
T ss_pred ccCCCeEEEEEEecCCCC--CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE--ecCCEEEEEECCCCH
Confidence 567999999998854433 57999984321 11 100 00 0111110 111456799999999
Q ss_pred CCCeEEEEEEEe
Q psy1095 238 EDEGEFTCRVAN 249 (325)
Q Consensus 238 ~d~G~Y~C~~~~ 249 (325)
+|+|.|.|.+.+
T Consensus 79 sDsgtY~Ca~~~ 90 (104)
T cd05720 79 ENEGYYFCSVAS 90 (104)
T ss_pred HHCEEEEEEEcc
Confidence 999999998763
No 353
>KOG1480|consensus
Probab=97.77 E-value=1.4e-05 Score=71.03 Aligned_cols=199 Identities=19% Similarity=0.284 Sum_probs=111.4
Q ss_pred CCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCC----eeEEeeCCeeCCC-----CCcEE
Q psy1095 43 LSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP----WTSWSKDGKPATP-----NARVT 113 (325)
Q Consensus 43 ~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~----~v~W~~~~~~~~~-----~~~~~ 113 (325)
.|-|.|...+..+... ..|.|+..|.+..+..+..+.|.|.+...+.. .=.|..+.+.... .+-..
T Consensus 7 ~~~~~~~~~~~~~a~g-----~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~ 81 (909)
T KOG1480|consen 7 TDNGEALPESIPSAPG-----DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG 81 (909)
T ss_pred CCchhhccccCCCCCC-----CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee
Confidence 4555555544332221 56788999999999999999999997533321 1134433221110 00000
Q ss_pred EEecCCeEEEEEccCCCCCC---eEEEEEE--EeCCeeEEEE-EEEEEECCCcccCCCeeeecCcCeeEecCCcEEEEEE
Q psy1095 114 IREKEDLRFLEISEVTLEDA---GLYTIKV--ENNYGSVEAT-ARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQ 187 (325)
Q Consensus 114 ~~~~~~~~~l~i~~~~~~d~---G~Y~C~~--~~~~~~~~~~-~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~ 187 (325)
.. .....|.....++. .-|.|+- ....|..... ..+.+. ...-.+...+....|..+..+++.|.
T Consensus 82 ~~----~~si~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~a-----y~rk~f~~~p~~q~V~~~s~~~l~cr 152 (909)
T KOG1480|consen 82 VR----EVSIDISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIA-----YLRKHFEQSPVGQEVQEETTLQLPCR 152 (909)
T ss_pred EE----eeeeeeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHH-----HHHHhhccChhhheeccccccccccc
Confidence 00 01133333332222 3677664 3334411110 011111 11223445555667888899999997
Q ss_pred EE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE-eEEEEEEEee
Q psy1095 188 VQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV-TSACLIVDVV 265 (325)
Q Consensus 188 ~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~ 265 (325)
.. +.|. ..+.|++++..+......... ....+.+..++..|.|.|+|.|.|-.+... ..+.+.|+..
T Consensus 153 ~pe~~pa--ae~~w~k~e~~~~pd~n~~~~---------~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~ 221 (909)
T KOG1480|consen 153 PPEGDPK--AEVEWLKNEVVIDPDANVIRA---------SDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVN 221 (909)
T ss_pred Ccccchh--hhhhccccCCCCCccccchhh---------hcCCccccchhhhhcccceeeeehhhccccccceEEEEEEc
Confidence 74 4444 789999998877663332222 224799999999999999999999766443 3455555444
Q ss_pred C
Q psy1095 266 K 266 (325)
Q Consensus 266 ~ 266 (325)
.
T Consensus 222 g 222 (909)
T KOG1480|consen 222 G 222 (909)
T ss_pred C
Confidence 3
No 354
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.76 E-value=0.00031 Score=48.87 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=48.6
Q ss_pred CCeeEec-CCceEecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCc---EEEEecCCe----EEEEEccCCCCC-C
Q psy1095 65 SPRFYAV-PHNKICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNAR---VTIREKEDL----RFLEISEVTLED-A 133 (325)
Q Consensus 65 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d-~ 133 (325)
+|.+.+. |....+.+++.++|.|.+.+ +|. ..|+|++++..+..... ......++. ..|.+......+ .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 4555443 33333456778999999998 454 47899999988764321 111111121 234444333323 5
Q ss_pred eEEEEEEEeCCeeE
Q psy1095 134 GLYTIKVENNYGSV 147 (325)
Q Consensus 134 G~Y~C~~~~~~~~~ 147 (325)
..|+|.+.+.....
T Consensus 82 ~~ytC~V~H~g~~~ 95 (115)
T cd05769 82 NTFTCIVQFYGGTD 95 (115)
T ss_pred CeEEEEEEEeCCcc
Confidence 69999998765443
No 355
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.75 E-value=0.00014 Score=49.61 Aligned_cols=69 Identities=22% Similarity=0.421 Sum_probs=41.1
Q ss_pred EecCCCeEEEEEEEEe-cCC-CeeEEeeCCeeCCCCCcEEE--Eec---CCe----EEEEEccCCCCCCeEEEEEEEeCC
Q psy1095 76 ICDLGDTVRFQCSVTG-QPA-PWTSWSKDGKPATPNARVTI--REK---EDL----RFLEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 76 ~v~~g~~v~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~--~~~---~~~----~~l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
.+..|+.++|.|.+.| +|. ..++|+++++++........ ... ++. ..|.+..-...+...|+|.+.+..
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 3456789999999998 453 36799999998754321111 111 121 224443322234568999997654
No 356
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.62 E-value=0.00042 Score=47.52 Aligned_cols=76 Identities=5% Similarity=0.143 Sum_probs=48.6
Q ss_pred cCeeEecCCcEEEEEEEEecCCCC-CeeEEeeCCE-Eec------c-CC---CCceEEEecCCcceeEEEEEeCCCCCCC
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPPND-HDISWFRNNR-LIK------L-DS---DMKPEVQVDSKENLVIARLKIPHVYPED 239 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~~~-~~~~W~~~~~-~~~------~-~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d 239 (325)
....+..|..++|.|.++++.... ..+.|.|... .+. . +. ..+......++.......|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 345677889999999998766543 6788988321 110 0 00 0111111222223356789999999999
Q ss_pred CeEEEEEE
Q psy1095 240 EGEFTCRV 247 (325)
Q Consensus 240 ~G~Y~C~~ 247 (325)
.+.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999975
No 357
>PHA02633 hypothetical protein; Provisional
Probab=97.60 E-value=0.00027 Score=41.94 Aligned_cols=39 Identities=26% Similarity=0.200 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEecc
Q psy1095 284 TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322 (325)
Q Consensus 284 ~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 322 (325)
...|.|.++..+|+|.|.|...|..-..+.++.|.|...
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 346999999999999999999999989999999998654
No 358
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.60 E-value=0.00023 Score=46.22 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=37.9
Q ss_pred cEEEEEEEEecCCCCCeeEEeeCCE--E---ec-cC--C------CCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095 181 SVTFECQVQVVPPNDHDISWFRNNR--L---IK-LD--S------DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246 (325)
Q Consensus 181 ~v~l~C~~~~~~~~~~~~~W~~~~~--~---~~-~~--~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 246 (325)
.++|.|.+.........+.|++... . +. .. . ....+.............|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 3789998875443113789988432 1 11 00 0 00111111111112457899999999999999996
Q ss_pred E
Q psy1095 247 V 247 (325)
Q Consensus 247 ~ 247 (325)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 359
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.59 E-value=0.00053 Score=46.13 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=41.0
Q ss_pred cCCceEecCCCeEEEEEEEEec--C-CCeeEEeeCCeeCCC-CCcEEEEecCCe----EEEEEccCCCCCCeEEEEEEEe
Q psy1095 71 VPHNKICDLGDTVRFQCSVTGQ--P-APWTSWSKDGKPATP-NARVTIREKEDL----RFLEISEVTLEDAGLYTIKVEN 142 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~~~~--p-~~~v~W~~~~~~~~~-~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~ 142 (325)
.|....+..|+.++|.|.+.|. | ...++|.|++..... .........++. ..|.+......+...|+|.+.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3444446678999999999987 4 346799998743211 111111111111 1233433222344589999977
Q ss_pred CC
Q psy1095 143 NY 144 (325)
Q Consensus 143 ~~ 144 (325)
..
T Consensus 85 ~~ 86 (96)
T cd07696 85 PD 86 (96)
T ss_pred CC
Confidence 54
No 360
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.58 E-value=0.00065 Score=45.58 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=38.6
Q ss_pred ecCCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCc-EEEEecCCeEEEE-EccCCCC-CCeEEEEEEEeCC
Q psy1095 77 CDLGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNAR-VTIREKEDLRFLE-ISEVTLE-DAGLYTIKVENNY 144 (325)
Q Consensus 77 v~~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~l~-i~~~~~~-d~G~Y~C~~~~~~ 144 (325)
+..+..++|.|.+.+ +| ...++|.++|..+..... ......++...+. -..+..+ ....|+|.+.+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence 444677999999998 45 346799999998754321 1111222222111 1122333 2346999997743
No 361
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.52 E-value=0.0013 Score=45.23 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=48.4
Q ss_pred ecCCceEecCCCeEEEEEEEEecCC---CeeEEeeCCe-eC------------C--CCCcEEEE--ecCCeEEEEEccCC
Q psy1095 70 AVPHNKICDLGDTVRFQCSVTGQPA---PWTSWSKDGK-PA------------T--PNARVTIR--EKEDLRFLEISEVT 129 (325)
Q Consensus 70 ~~~~~~~v~~g~~v~l~C~~~~~p~---~~v~W~~~~~-~~------------~--~~~~~~~~--~~~~~~~l~i~~~~ 129 (325)
.++....+..|+.++|.|.+++... -.+.|+|... .+ . ...++... ..++..+|.+.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 4456667888999999999976442 3578987421 10 0 11233222 23456789999999
Q ss_pred CCCCeEEEEEE
Q psy1095 130 LEDAGLYTIKV 140 (325)
Q Consensus 130 ~~d~G~Y~C~~ 140 (325)
.+|++.|.|..
T Consensus 83 a~DTa~Y~Ca~ 93 (115)
T cd05721 83 ANQTDIYFCKI 93 (115)
T ss_pred HHHCeEEEEEe
Confidence 99999999965
No 362
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.51 E-value=0.0012 Score=44.25 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=43.1
Q ss_pred CCcEEEEEEEE-ecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEE
Q psy1095 179 GDSVTFECQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV 255 (325)
Q Consensus 179 g~~v~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 255 (325)
.....+.|.+. |.|. +.+.|+++... .... ......++.....+.|.+.....+|...|+|.+.+..-...
T Consensus 15 ~~~~va~C~s~~gkP~--a~ItW~~~~~~---~~~~-~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~ 86 (95)
T cd05719 15 EPVTVATCVSANGKPP--ATISWETTLGG---EAET-QSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP 86 (95)
T ss_pred CccEEEEEECCCCcCC--CEEEEEeCCCC---ccee-EeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 34678999986 4555 89999997111 0000 01011122344557888876666667799999998764433
No 363
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.51 E-value=0.0019 Score=43.32 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=37.6
Q ss_pred CCCeEEEEEEEEe-cC-CCeeEEeeCCeeCCCCCc--EEEEecCCe----EEEEEccCCCCCCeEEEEEEEeCC
Q psy1095 79 LGDTVRFQCSVTG-QP-APWTSWSKDGKPATPNAR--VTIREKEDL----RFLEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 79 ~g~~v~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
.++.++|.|.+.+ +| ...|+|+++|.. ..... ......++. ..|.+....-.....|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4677999999998 45 347899999997 32210 011111221 223433322123558999997754
No 364
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.45 E-value=0.001 Score=43.55 Aligned_cols=65 Identities=25% Similarity=0.450 Sum_probs=42.6
Q ss_pred cCCCeEEEEEEEEe-cCCC-eeEEeeCCeeCCCCCcEEEE--ecCCeE----EEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 78 DLGDTVRFQCSVTG-QPAP-WTSWSKDGKPATPNARVTIR--EKEDLR----FLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 78 ~~g~~v~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~--~~~~~~----~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
..++.++|.|.+.+ +|.. .|.|++++..+......... ..++.. .|.+. ..+...|+|.+.+...
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 34899999999988 5544 78999999987654322211 223322 24444 5556689999987643
No 365
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.44 E-value=0.0014 Score=43.89 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=45.1
Q ss_pred CcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEe-cCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV-DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 180 ~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
....+.|.+.+..|+ +.+.|+++.... ....... .+......+.|.+..-..+|...|+|++.+..-.....+
T Consensus 16 ~~~va~C~s~~gkPa-a~IsW~~~~~g~-----~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~ 89 (95)
T cd07703 16 PVPVAKCVSANGRPP-ARISWSSTLGGN-----ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL 89 (95)
T ss_pred ccEEEEEEcCCCCCC-cEEEEEcCCCCC-----eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 357899988754443 899999872111 1111111 122234557888876666677799999999764444333
Q ss_pred EE
Q psy1095 259 CL 260 (325)
Q Consensus 259 ~l 260 (325)
.+
T Consensus 90 ~~ 91 (95)
T cd07703 90 PV 91 (95)
T ss_pred EE
Confidence 33
No 366
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.43 E-value=0.0021 Score=43.18 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=39.2
Q ss_pred CCeEEEEEEE-EecCCCeeEEeeCCeeCCCCCcEEE-EecCC----eEEEEEccCCCCCCeEEEEEEEeCCee
Q psy1095 80 GDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTI-REKED----LRFLEISEVTLEDAGLYTIKVENNYGS 146 (325)
Q Consensus 80 g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 146 (325)
.....+.|.+ .|.|.+.|+|+++. ........ ...++ ...|.+.....+|...|+|++.+....
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 3457789998 56899999999971 11111111 11111 234666555566666999999886543
No 367
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.42 E-value=0.00041 Score=42.03 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=35.1
Q ss_pred cCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095 78 DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142 (325)
Q Consensus 78 ~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 142 (325)
..|.+|+|+|...+. .+.|++++..+..... .+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCC
Confidence 468999999985422 3899999866554222 13333444 889999999853
No 368
>PHA02633 hypothetical protein; Provisional
Probab=97.36 E-value=0.00081 Score=39.92 Aligned_cols=37 Identities=24% Similarity=0.106 Sum_probs=32.4
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECC
Q psy1095 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158 (325)
Q Consensus 122 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~ 158 (325)
.|.|.++..+|+|.|.|.+.|.......++.|.|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 4999999999999999999988877788888888764
No 369
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.35 E-value=0.0011 Score=40.47 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=41.1
Q ss_pred CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEE
Q psy1095 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258 (325)
Q Consensus 179 g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 258 (325)
...|.|.|.+ . ..+.|++ |..+.... ..+|.|.....+-.|.|.|.+.+ .....
T Consensus 6 ~~~V~L~C~~----~--tsi~W~k-G~~~~~~~---------------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~ 59 (69)
T cd07691 6 EGKVFLKCNG----A--TNITWKK-GKEILEVS---------------NTLLDLGSRINDPRGTYSCKESE----PNKEK 59 (69)
T ss_pred CceEEEEecC----C--CcEEEec-Cccccccc---------------ccEEeccCcccCCCcceEecCcc----CCCcE
Confidence 4579999965 2 4699999 54433211 14799999999999999998876 22344
Q ss_pred EEEEEe
Q psy1095 259 CLIVDV 264 (325)
Q Consensus 259 ~l~v~~ 264 (325)
.|.|++
T Consensus 60 ~LQVyY 65 (69)
T cd07691 60 TLQVYY 65 (69)
T ss_pred EEEEEE
Confidence 555543
No 370
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.33 E-value=0.0016 Score=43.31 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=39.2
Q ss_pred ecCCCeEEEEEEEEe-cCC--CeeEEeeCCeeCCCCCcEEEE-----ecCCeEEEEEccCCCCCCe-EEEEEEE
Q psy1095 77 CDLGDTVRFQCSVTG-QPA--PWTSWSKDGKPATPNARVTIR-----EKEDLRFLEISEVTLEDAG-LYTIKVE 141 (325)
Q Consensus 77 v~~g~~v~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G-~Y~C~~~ 141 (325)
+.+|..+++.|.+.+ .|. ..+.|++....+.... +.-. .......+++... .+|.| +|+|.+.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~ 83 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAK 83 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEE
Confidence 478999999999975 554 6789998766554332 1110 0111233555444 55555 9999985
No 371
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.31 E-value=0.00093 Score=40.78 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=36.4
Q ss_pred CCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142 (325)
Q Consensus 79 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 142 (325)
..+.|.|+|.+ ...|.|++ |..+.... ..+|.+.....+-.|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 34679999965 24599999 55544321 23588888889999999998865
No 372
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.30 E-value=0.0024 Score=42.73 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=41.2
Q ss_pred CeEEEEEEEE-ecCCCeeEEeeCCeeCCCCCcEEEEecCC---eEEEEEccCCCCCCeEEEEEEEeCCeeEEEEE
Q psy1095 81 DTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKED---LRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151 (325)
Q Consensus 81 ~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 151 (325)
..+.+.|.+. +.|.+.|+|+++...... .......++. ...|.+.....+|...|+|++.+........+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~ 89 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL 89 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 3478999875 589999999987211110 0111111111 23466666566667799999988654433333
No 373
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.22 E-value=0.0013 Score=44.22 Aligned_cols=78 Identities=14% Similarity=0.257 Sum_probs=42.7
Q ss_pred CeeE-ecCCceEecCCCeEEEEEEEEe-c-C-CCeeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEE
Q psy1095 66 PRFY-AVPHNKICDLGDTVRFQCSVTG-Q-P-APWTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYT 137 (325)
Q Consensus 66 p~~~-~~~~~~~v~~g~~v~l~C~~~~-~-p-~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~ 137 (325)
|.+. ..|....+..+..++|.|.+.+ + | ...|+|.+++.. ...........++ ...|.+..-.-.....|+
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt 82 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA 82 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence 4443 3344444557889999999998 4 4 347899999875 1111111111122 123444322222334799
Q ss_pred EEEEeCC
Q psy1095 138 IKVENNY 144 (325)
Q Consensus 138 C~~~~~~ 144 (325)
|.+.+..
T Consensus 83 C~V~H~~ 89 (99)
T cd04986 83 CTVTHPE 89 (99)
T ss_pred EEEECCC
Confidence 9997654
No 374
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.13 E-value=0.091 Score=44.00 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=48.4
Q ss_pred CeeEecCCcEEEEEEEEe--cCCCCCeeEEeeCCEEecc---------------CCCCceEEEecCC--cceeEEEEEeC
Q psy1095 173 NLRCCDGDSVTFECQVQV--VPPNDHDISWFRNNRLIKL---------------DSDMKPEVQVDSK--ENLVIARLKIP 233 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~--~~~~~~~~~W~~~~~~~~~---------------~~~~~~~~~~~~~--~~~~~~~l~i~ 233 (325)
...+..|..|.|.|..+- +.. -....|..-+-++.. ...-.+......+ .-...++|+|.
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~-i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNEN-ISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcc-cccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 345677999999998864 222 146789764433320 0011111111100 11256899999
Q ss_pred CCCCCCCeEEEEEEEeCCCc
Q psy1095 234 HVYPEDEGEFTCRVANELGE 253 (325)
Q Consensus 234 ~~~~~d~G~Y~C~~~~~~~~ 253 (325)
++..+..|=|+|.|......
T Consensus 352 ka~I~N~GCY~~~a~~g~~~ 371 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFK 371 (500)
T ss_pred eEEEEcCCceEEEEecCcch
Confidence 99999999999999876443
No 375
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.04 E-value=0.0022 Score=38.91 Aligned_cols=51 Identities=22% Similarity=0.523 Sum_probs=34.6
Q ss_pred cCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeC
Q psy1095 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250 (325)
Q Consensus 178 ~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 250 (325)
.|..|+|+|... . ..+.|.+++..+..+. ..+.+.+-. ++.|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~---~--~~i~W~~n~~~~~g~~----------------~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLS---G--DDIKWKKNDQVSQGSD----------------EKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCC---C--CCceEEeCCccCCCCC----------------ceEEeeccC-CCCceEEEEeCCC
Confidence 589999999753 1 3489999985544211 134444444 8899999998543
No 376
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.85 E-value=0.0097 Score=39.83 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=42.4
Q ss_pred eEecCCCeEEE-EEEE-EecCCCeeEEeeCCeeCCCCCcEEEEecCC----eEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 75 KICDLGDTVRF-QCSV-TGQPAPWTSWSKDGKPATPNARVTIREKED----LRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 75 ~~v~~g~~v~l-~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
..+.+|+.+.+ .|.+ .|.|.+.|+|+.+...... .. .....++ ...+.+.....+|.-.++|.+.+..-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~-~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SH-SQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-ee-eecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34678888988 8987 5689999999976332211 00 0111111 12355555556677799999977543
No 377
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.82 E-value=0.0088 Score=39.85 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=43.4
Q ss_pred EecCCcEEEEEEEEecC-CCCCeeEEeeCCEEeccCCCCceEEEecCC-cceeEEEEEeCCCCCCCCe-EEEEEEEeCCC
Q psy1095 176 CCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSK-ENLVIARLKIPHVYPEDEG-EFTCRVANELG 252 (325)
Q Consensus 176 v~~g~~v~l~C~~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~ 252 (325)
+.+|..+++.|.+.+.. .....+.|+++...+........ .+.+ .......+.+... .+|.| .|.|.|.-...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~---~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLED---MDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccc---cccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence 47899999999997543 33478999987766553321110 0000 0112245555554 55555 99999976544
No 378
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.78 E-value=0.018 Score=38.50 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=48.1
Q ss_pred eeEecCCcEEE-EEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCC
Q psy1095 174 LRCCDGDSVTF-ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 174 ~~v~~g~~v~l-~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 252 (325)
..+.+|+.+.+ .|.+.+..|+ +.+.|+.+...... ... ....++.....+.|.+...+.+|...++|.+.+..-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPa-a~IsW~~~~~G~~~---~~~-~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPA-ADVTWETNVYGTSE---SHS-QEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccC-CEeEEeCCCCCccc---eee-ecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 45667888898 9988655444 89999986432211 111 111122444567888877777777899999988754
No 379
>KOG0613|consensus
Probab=96.74 E-value=0.0075 Score=57.64 Aligned_cols=168 Identities=10% Similarity=-0.038 Sum_probs=97.8
Q ss_pred ecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEE
Q psy1095 77 CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156 (325)
Q Consensus 77 v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 156 (325)
..+++...|.|.+.+...+.+.|+.+....... .-+..+..+.+....+.+.|+|...+..+.....+.-.+.
T Consensus 241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~ 313 (1205)
T KOG0613|consen 241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAP 313 (1205)
T ss_pred ccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeeeEEee
Confidence 344555666666666555555555443322211 1112346667777788888888887766654443332222
Q ss_pred CCCcc----------c---CCCeeeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCc
Q psy1095 157 DPRAI----------I---SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223 (325)
Q Consensus 157 ~~~~~----------~---~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 223 (325)
..+.. . ..+.............+..+++.|...+.+.+ -.+.|+.+......+..........
T Consensus 314 i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~--- 389 (1205)
T KOG0613|consen 314 IGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKP-DEAQGYHGEEVSSESLGALPCPVGT--- 389 (1205)
T ss_pred ccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCC-chheeeccccccccccccccccccc---
Confidence 11110 0 11222222334456678889999999988873 3599998766554433221111111
Q ss_pred ceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256 (325)
Q Consensus 224 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 256 (325)
.+...+.|..+...+.+.|.|.|.|..|....
T Consensus 390 -~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 390 -VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred -ccCcchhhhhcCcccccccccceeccCCcccc
Confidence 13457888899999999999999998886554
No 380
>PHA02982 hypothetical protein; Provisional
Probab=96.70 E-value=0.026 Score=42.69 Aligned_cols=117 Identities=13% Similarity=0.217 Sum_probs=69.8
Q ss_pred eEecCCCeEEEEEEEEe-cCCCeeEEeeCCe-eCC----------C--------CCcEEEEecCCeEEEEEccCCCCCCe
Q psy1095 75 KICDLGDTVRFQCSVTG-QPAPWTSWSKDGK-PAT----------P--------NARVTIREKEDLRFLEISEVTLEDAG 134 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~~-~p~~~v~W~~~~~-~~~----------~--------~~~~~~~~~~~~~~l~i~~~~~~d~G 134 (325)
.....+++|.|+|.... ..-....|+++.. .+. . ...+.+.-.+..++|+|.++..++.|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 34567999999999643 2334678987532 111 0 12344455667789999999999999
Q ss_pred EEEEEEEeCCeeEEE-EEEEEEECCCcccCCCeeeecCcCeeEec-CCcEEEEEEEEecCCCCCeeEEeeCCE
Q psy1095 135 LYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCD-GDSVTFECQVQVVPPNDHDISWFRNNR 205 (325)
Q Consensus 135 ~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~p~~~~~~~~~~v~~-g~~v~l~C~~~~~~~~~~~~~W~~~~~ 205 (325)
-|+|.+....+..+. ..-|.|+.. .+. ..+.+ ...-.+.|-+-.... .-..|.-+|.
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~-------~V~-----~~W~e~nNeT~V~CyVgS~~~--dvp~W~V~GV 172 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKE-------DIL-----YVVEEHNNETIITCFVGSKHG--DVPRFIVAGI 172 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecc-------eEE-----EEEEecCCeEEEEEEEEeccC--CCccEEEeeE
Confidence 999999875543322 333444221 110 01122 334568897754443 2237887665
No 381
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.63 E-value=0.00095 Score=46.90 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=43.8
Q ss_pred ecCCCeEEEEEEEEe---c--CCCeeEEeeCCeeCCC---C-CcEE--------E-EecCCeEEEEEccCCCCCCeEEEE
Q psy1095 77 CDLGDTVRFQCSVTG---Q--PAPWTSWSKDGKPATP---N-ARVT--------I-REKEDLRFLEISEVTLEDAGLYTI 138 (325)
Q Consensus 77 v~~g~~v~l~C~~~~---~--p~~~v~W~~~~~~~~~---~-~~~~--------~-~~~~~~~~l~i~~~~~~d~G~Y~C 138 (325)
..-+++|.|+|.+.. . +...|.|..++..+-. . .+.. + ....+..+|.+.....- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 446899999999854 1 2346899998876521 1 1110 1 01123445776654433 799999
Q ss_pred EEEeCCeeEEEEEEEEE
Q psy1095 139 KVENNYGSVEATARLEI 155 (325)
Q Consensus 139 ~~~~~~~~~~~~~~l~v 155 (325)
.+.......+..+.|..
T Consensus 103 eVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGETTIELKY 119 (130)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEEE
Confidence 99887776666666665
No 382
>KOG1480|consensus
Probab=95.90 E-value=0.0037 Score=56.34 Aligned_cols=77 Identities=26% Similarity=0.392 Sum_probs=58.4
Q ss_pred eeEecCCceEecCCCeEEEEEEE-EecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 67 RFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 67 ~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
.+...|.-..|..+..+.+.|.. .+.|...+.|++++..+.+......... +.+.+..++..|.|+|+|++.|-.+
T Consensus 131 ~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d---~~li~~~arlsd~~nytc~a~ni~~ 207 (909)
T KOG1480|consen 131 HFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD---HNLIISQARLSDSGNYTCEATNIVA 207 (909)
T ss_pred hhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc---CCccccchhhhhcccceeeeehhhc
Confidence 34455666668888999999996 5678889999999988876444333333 2389999999999999999988665
Q ss_pred e
Q psy1095 146 S 146 (325)
Q Consensus 146 ~ 146 (325)
.
T Consensus 208 ~ 208 (909)
T KOG1480|consen 208 K 208 (909)
T ss_pred c
Confidence 3
No 383
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.90 E-value=0.0089 Score=42.12 Aligned_cols=85 Identities=24% Similarity=0.230 Sum_probs=46.4
Q ss_pred ecCCcEEEEEEEEecC---CCCCeeEEeeCCEEeccCCCCceEEEec-------CCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095 177 CDGDSVTFECQVQVVP---PNDHDISWFRNNRLIKLDSDMKPEVQVD-------SKENLVIARLKIPHVYPEDEGEFTCR 246 (325)
Q Consensus 177 ~~g~~v~l~C~~~~~~---~~~~~~~W~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~ 246 (325)
.-+++|.|+|.+.... .....+.|..++..+-.-.......... .....+.++|.+.....- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 3578999999985311 1125699999887763221111110000 111123466777764443 8999999
Q ss_pred EEeCCCcEEeEEEEEE
Q psy1095 247 VANELGEVVTSACLIV 262 (325)
Q Consensus 247 ~~~~~~~~~~~~~l~v 262 (325)
+.....+....+.|..
T Consensus 104 Vt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 104 VTELSREGETTIELKY 119 (130)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEecCCCceEEEEEEE
Confidence 9998887777777665
No 384
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.51 E-value=0.026 Score=44.48 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=36.8
Q ss_pred CCCeeEEeeC-CeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeC
Q psy1095 93 PAPWTSWSKD-GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENN 143 (325)
Q Consensus 93 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 143 (325)
..|.+.|... ++.+....+..+...+ .|.+.+.+.+++|.|+|.....
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 4678999975 5556655566665544 4999999999999999998654
No 385
>KOG4597|consensus
Probab=95.26 E-value=0.029 Score=47.88 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=63.1
Q ss_pred eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeC---CeeC--CCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE
Q psy1095 67 RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD---GKPA--TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE 141 (325)
Q Consensus 67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~---~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 141 (325)
.+..-|....+-.+++..++|-+.|.+.+.|+|.+. +..+ .+...+..........|.|-+..+.|+|-|+|.+.
T Consensus 198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~r 277 (560)
T KOG4597|consen 198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSAR 277 (560)
T ss_pred ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccc
Confidence 444445566678899999999999999999999863 2222 11111111111234569999999999999999999
Q ss_pred eCCeeEEEEEEEEEE
Q psy1095 142 NNYGSVEATARLEIM 156 (325)
Q Consensus 142 ~~~~~~~~~~~l~v~ 156 (325)
+..|...+.+.+.+.
T Consensus 278 cg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 278 CGAGFLRRDVPCSSV 292 (560)
T ss_pred cccceeeccceeeee
Confidence 998877777766654
No 386
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=95.19 E-value=1.1 Score=34.67 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=36.5
Q ss_pred cCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC-CCCCCCCeEEEEEEEeCCC
Q psy1095 191 VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP-HVYPEDEGEFTCRVANELG 252 (325)
Q Consensus 191 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~~~~~~~ 252 (325)
+|+....++||.|+..+..............+.....++|.+. +...+..-..+|.+.....
T Consensus 2 YPp~S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~ 64 (211)
T PF02124_consen 2 YPPRSVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRD 64 (211)
T ss_pred CCCCcEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccC
Confidence 3444478999999998763322221111112245566788883 4444445589999876544
No 387
>PHA03042 CD47-like protein; Provisional
Probab=95.17 E-value=0.13 Score=40.89 Aligned_cols=71 Identities=18% Similarity=0.396 Sum_probs=45.0
Q ss_pred cCCcEEEEEEEEec---CCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095 178 DGDSVTFECQVQVV---PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254 (325)
Q Consensus 178 ~g~~v~l~C~~~~~---~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 254 (325)
-.+++.++|.+... .-....++|..++..+-..+... .++|.+... ..-.|+|+|.|.+...+.
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn------------~aSL~~~f~-~~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN------------TSSLKFNFS-KNLSGNYTCEAINKFNKI 96 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc------------ceEEEEecc-ccCCCceeEEEeecccCc
Confidence 47889999998642 11126799999998775433321 145666433 334899999999866655
Q ss_pred EeEEEEE
Q psy1095 255 VTSACLI 261 (325)
Q Consensus 255 ~~~~~l~ 261 (325)
.....|.
T Consensus 97 k~~IeLk 103 (286)
T PHA03042 97 KNTIELQ 103 (286)
T ss_pred cEEEEEE
Confidence 5444433
No 388
>KOG0613|consensus
Probab=95.13 E-value=0.041 Score=52.92 Aligned_cols=227 Identities=11% Similarity=0.062 Sum_probs=129.6
Q ss_pred eeeecccCCCCcccCC------CC-CCCCCCCCCcccCCCCCCCccccccccccccc---------------------cc
Q psy1095 11 LSVKLTRPSGLMSGHS------TP-RSTPRSTPPRSISPLSSRTFTPYSLNSAIRTR---------------------RL 62 (325)
Q Consensus 11 ~~~~~~~~~~~~~~~~------~~-~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~~~~---------------------~~ 62 (325)
|...|+.+.+.+..+. +. .....+..|.+-.+.+.+.|+|...+...+.. .+
T Consensus 249 i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aa 328 (1205)
T KOG0613|consen 249 IQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAA 328 (1205)
T ss_pred eeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhc
Confidence 4455566555554432 11 12334667899999999999988765544221 01
Q ss_pred CCCCeeEec---CCceEecCCCeEEEEEEEEecCCCe-eEEeeCCeeCCCCC--cEEEEecCCeEEEEEccCCCCCCeEE
Q psy1095 63 TSSPRFYAV---PHNKICDLGDTVRFQCSVTGQPAPW-TSWSKDGKPATPNA--RVTIREKEDLRFLEISEVTLEDAGLY 136 (325)
Q Consensus 63 ~~~p~~~~~---~~~~~v~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y 136 (325)
..+|.+... -.......+..+.+.|...+.+.|. +.|+.+......+. .+..........+.+..+...+.+.|
T Consensus 329 a~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~ 408 (1205)
T KOG0613|consen 329 ARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFT 408 (1205)
T ss_pred cCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCccccccc
Confidence 122222111 1233455677799999998887776 89998776654443 22222333455688889999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEec--CCcEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCc
Q psy1095 137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD--GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK 214 (325)
Q Consensus 137 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~--g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 214 (325)
.|.+.|..+.........+...... ..+............. -+.+.+.|...+++.+...++|.+++-.......
T Consensus 409 ~~~a~n~~g~~~~~~~~~vs~~~~g-t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~-- 485 (1205)
T KOG0613|consen 409 RVPAVNKGGTEQTIAESTVSEEMPG-TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSV-- 485 (1205)
T ss_pred ccceeccCCcccccchhhcccccCC-CCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccc--
Confidence 9999998886554444444433222 2222222222233333 3778889988877752245666665443321110
Q ss_pred eEEEecCCcceeEEEEEeCCCCCCCCeEEEEE
Q psy1095 215 PEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246 (325)
Q Consensus 215 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 246 (325)
.. ... ....|.+.-....|.|.|.-.
T Consensus 486 ~l--~r~----~~tslLlk~~~~~~~A~~~~a 511 (1205)
T KOG0613|consen 486 TL--TRD----VLTSLLLKVASLSDGAQYTRA 511 (1205)
T ss_pred cc--ccc----chhhheeeccCCCccchhhhh
Confidence 00 111 224566666777888888543
No 389
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.09 E-value=6 Score=42.62 Aligned_cols=251 Identities=17% Similarity=0.125 Sum_probs=132.0
Q ss_pred ccCCCCCCCcccccccccc-------cccccCCCC-eeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCC-eeCC--
Q psy1095 39 SISPLSSRTFTPYSLNSAI-------RTRRLTSSP-RFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG-KPAT-- 107 (325)
Q Consensus 39 ~v~~~d~G~Y~c~~~~~~~-------~~~~~~~~p-~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~-~~~~-- 107 (325)
.++..++|.|.-.....+. ....++.++ .+.+......+..|+.++|.+.+...+...+.|...+ ....
T Consensus 1833 ~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t 1912 (2740)
T TIGR00864 1833 CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ 1912 (2740)
T ss_pred EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec
Confidence 3788899999866432222 122333333 4445556667889999999999876667788887653 2221
Q ss_pred CCCcEEEEecCCeEEEEEccCCCCCCeEEEEE--EEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCCcEEEE
Q psy1095 108 PNARVTIREKEDLRFLEISEVTLEDAGLYTIK--VENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185 (325)
Q Consensus 108 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~ 185 (325)
....+. -.-..-|.|... +.|..+...+...+.|+.+- ....+. ......+..|+..+|.
T Consensus 1913 ~~~t~~--------------HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V---~gL~I~-~~c~~~~~~g~~~tF~ 1974 (2740)
T TIGR00864 1913 PGPRFS--------------HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAV---RGLQIP-DCCAAGIATGEEKNFT 1974 (2740)
T ss_pred CCCeEE--------------eecCCCCcEEEEEEEEeccceeeeeEEEEEEEec---cceEec-CCcccceecCceEEEE
Confidence 111111 122234566544 46777776777777776541 111111 1112226789999999
Q ss_pred EEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE--EEeCCCcEEeEEEEEEE
Q psy1095 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR--VANELGEVVTSACLIVD 263 (325)
Q Consensus 186 C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~v~ 263 (325)
-.+....+ ..+.|+.+-..+.-+.. .. ..+ ...+... ...|.|.-. |.|..+.......+.|+
T Consensus 1975 A~v~~g~~--V~f~W~f~~~~~~g~~~--~~--~~G----~~vty~~-----~~~G~~~I~v~A~N~l~s~n~t~~i~VQ 2039 (2740)
T TIGR00864 1975 ANVQRGKP--VAFAWTFDLHHLHGDSL--VI--HMG----KDVSYTA-----EAAGLLEIQLGAFNALGAENITLQLEAQ 2039 (2740)
T ss_pred EEEecCCc--eEEEEEeeecccCCCcc--ee--ecC----CceEEcc-----CCCcEEEEEEEEEcccCcccccEEEEEE
Confidence 98876666 78999865332221111 00 111 0112222 357777764 55666665544444443
Q ss_pred eeCC---------eecC-----------CCC---ceEEEEeCCEEEEEEcCC----CCCCCeEEE--EEEECCCeeEEeE
Q psy1095 264 VVKG---------KDLT-----------SDG---RLNIITVGGTSVLTIEDI----TGDDSGKYQ--VHVSNQHGSDSCY 314 (325)
Q Consensus 264 ~~~~---------~~~~-----------~~~---~~~~~~~~~~~~l~i~~v----~~~d~G~Y~--C~a~n~~g~~~~~ 314 (325)
..-. ..+. ..+ .+...+.++...+.-..- +....|.|. -.|.|.+....+.
T Consensus 2040 ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~sHtY~r~G~Y~V~V~a~N~VS~~~a~ 2119 (2740)
T TIGR00864 2040 DALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAEHEYLHPGDYRVQVNASNLVSFFSAH 2119 (2740)
T ss_pred eheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeEEEecCCccEEEEEEEEcceeeeeeE
Confidence 2110 0000 111 112223333222211111 133468885 4578999998888
Q ss_pred EEEEEecc
Q psy1095 315 ASVAVEGR 322 (325)
Q Consensus 315 ~~l~V~~~ 322 (325)
++|.|...
T Consensus 2120 ~~i~V~vl 2127 (2740)
T TIGR00864 2120 AEINVQVL 2127 (2740)
T ss_pred EEEEEEEe
Confidence 88888754
No 390
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=95.08 E-value=0.18 Score=41.95 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=21.0
Q ss_pred cEEEEEEEEecCCCCCeeEEeeC
Q psy1095 181 SVTFECQVQVVPPNDHDISWFRN 203 (325)
Q Consensus 181 ~v~l~C~~~~~~~~~~~~~W~~~ 203 (325)
.++|.|.+.|+.|....+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999999887789999999
No 391
>PHA02982 hypothetical protein; Provisional
Probab=94.88 E-value=0.096 Score=39.78 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=48.7
Q ss_pred CeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEeccCC-----------------CCceEEEecCCcceeEEEEEeCCC
Q psy1095 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDS-----------------DMKPEVQVDSKENLVIARLKIPHV 235 (325)
Q Consensus 173 ~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~i~~~ 235 (325)
++....++.|.|.|.......- ....|+.+......+. ......+.++ ..++|+|.++
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i-~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g----~~STLTIkk~ 107 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEI-SRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG----NSSTFTMKKP 107 (251)
T ss_pred hhhccCCCcEEEEecCCCcchh-hhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec----cceeEEeccC
Confidence 3455679999999985322221 4688988543322100 1111222233 5689999999
Q ss_pred CCCCCeEEEEEEEeCCCc
Q psy1095 236 YPEDEGEFTCRVANELGE 253 (325)
Q Consensus 236 ~~~d~G~Y~C~~~~~~~~ 253 (325)
..+..|=|+|.+....+.
T Consensus 108 ~i~N~GCYtc~~ks~~~k 125 (251)
T PHA02982 108 DPQNLGCFTCEAKDAEGK 125 (251)
T ss_pred CcccCCceEEEEecCCCc
Confidence 999999999999886543
No 392
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.73 E-value=0.052 Score=42.86 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=34.9
Q ss_pred CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCC
Q psy1095 195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251 (325)
Q Consensus 195 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 251 (325)
+|.+.|.-++.....+.. ....+.. +.|.+.+...+++|.|+|......
T Consensus 12 DP~y~W~GP~g~~l~gn~-~~nIT~T-------G~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNS-YVNITET-------GKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCCCC-eEEEccC-------ceEEeeccccccCCceEEEEEEEe
Confidence 378999986555443332 2222233 489999999999999999988765
No 393
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=94.60 E-value=0.38 Score=31.71 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=43.9
Q ss_pred ecCCceEecCCCeEEEEEEEEe-----cCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE
Q psy1095 70 AVPHNKICDLGDTVRFQCSVTG-----QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKV 140 (325)
Q Consensus 70 ~~~~~~~v~~g~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 140 (325)
+.|+...+..|.+++..|.... .....+.|..++..++.+ ++....+ ....+++.+.....+-.|-|..
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~in~-~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVIND-TVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEEST-TEEEEEESS--SSEEEEEEEEE
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-HcceeCC-eEEEEEEccCCCCCceEEEEEE
Confidence 3455566889999999999853 245578999988866644 4444433 3366777777766666666654
No 394
>KOG4597|consensus
Probab=94.22 E-value=0.12 Score=44.29 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=64.7
Q ss_pred CcCeeEecCCcEEEEEEEEecCCCCCeeEEee---CCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFR---NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247 (325)
Q Consensus 171 ~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 247 (325)
+....+..+++..++|.+.|.+. +.|.|.+ ++..+...... ..++-.......|.|-+....|+|-|+|.+
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~--r~V~c~qv~anr~~vv~~~nq----~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQY--RVVTCEQVFANRENVVMRPNQ----TVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cchhhcccchhhcccccccCCcC--ceeeeehhhccccceeecCcc----ccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 34456778999999999999888 8899975 33222211110 011222335678999999999999999999
Q ss_pred EeCCCcEEeEEEEEEEee
Q psy1095 248 ANELGEVVTSACLIVDVV 265 (325)
Q Consensus 248 ~~~~~~~~~~~~l~v~~~ 265 (325)
.+..|...+.+.+.+...
T Consensus 277 rcg~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCSSVKG 294 (560)
T ss_pred ccccceeeccceeeeecc
Confidence 999999999888887544
No 395
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.81 E-value=0.5 Score=39.34 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=24.8
Q ss_pred ccCCCCeeEecCCceEecCCCeEEEEEEEEec-C-CCeeEEeeC
Q psy1095 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQ-P-APWTSWSKD 102 (325)
Q Consensus 61 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~v~W~~~ 102 (325)
....||.+.+.-.. ..+ .++|+|.+.|. | ...+.|.|+
T Consensus 199 ~R~vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 199 PKPVTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence 34467776553221 123 68999999994 5 346799999
No 396
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.79 E-value=3.8 Score=34.86 Aligned_cols=164 Identities=14% Similarity=0.196 Sum_probs=87.9
Q ss_pred ceEecCCCeEEEEEEEEe---cCCCeeEEeeCCeeCCC-----------------CCcEEEEec------CCeEEEEEcc
Q psy1095 74 NKICDLGDTVRFQCSVTG---QPAPWTSWSKDGKPATP-----------------NARVTIREK------EDLRFLEISE 127 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~~---~p~~~v~W~~~~~~~~~-----------------~~~~~~~~~------~~~~~l~i~~ 127 (325)
...+..|..|.|.|.++- .......|+-.+-++.+ ...+.+... -..++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 345667999999999853 23346789876544321 122222221 1246799999
Q ss_pred CCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCeeeecCcCeeEecCC-cEEEEEEEEecCCCCCeeEEeeCCEE
Q psy1095 128 VTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD-SVTFECQVQVVPPNDHDISWFRNNRL 206 (325)
Q Consensus 128 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~v~~g~-~v~l~C~~~~~~~~~~~~~W~~~~~~ 206 (325)
+...++|-|.|++....-..+...-|.|... .+ -....+|. .-...|-+-......+.+.|.-+|..
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-------V~-----f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~ 420 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVADH-------VF-----FKWNTEGDNETKVACYAAQYDMQPFSILWKSNGVS 420 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEeccE-------EE-----EEEEeccCceEEEEEEEEecccCCceeEEEEccEE
Confidence 9999999999999765433333333333221 11 01222333 45578877554222278999987765
Q ss_pred eccCCCCceEEEecCC--cceeEEEEEeCCCCCCC-CeEEEEEEEeC
Q psy1095 207 IKLDSDMKPEVQVDSK--ENLVIARLKIPHVYPED-EGEFTCRVANE 250 (325)
Q Consensus 207 ~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~ 250 (325)
..-....... ...+. .....+.+.|.+-...| --.-.|+..-.
T Consensus 421 ~~G~~~~~l~-~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg 466 (500)
T PHA02914 421 FGGEIADALD-EHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITG 466 (500)
T ss_pred ecCeecCccc-ccccccccccceEEEEEecccCccccccceEEEecC
Confidence 4311110000 00000 01233567777666556 44566765443
No 397
>PHA03042 CD47-like protein; Provisional
Probab=93.60 E-value=0.37 Score=38.42 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=51.4
Q ss_pred CCCeEEEEEEEeCCCcEEeEEEEEEEeeCCeecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEE
Q psy1095 238 EDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317 (325)
Q Consensus 238 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 317 (325)
.|.=.-.|.+.|.....-.+..+.|.+.+......++. + ..+|.++. +..-.|+|+|+|.+........++|
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n------~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-N------TSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-c------ceEEEEec-cccCCCceeEEEeecccCccEEEEE
Confidence 34556778888877666678889997776666555544 1 24566543 4445899999999877766666666
Q ss_pred EEe
Q psy1095 318 AVE 320 (325)
Q Consensus 318 ~V~ 320 (325)
+-+
T Consensus 103 k~~ 105 (286)
T PHA03042 103 QYV 105 (286)
T ss_pred EEE
Confidence 654
No 398
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.25 E-value=15 Score=39.99 Aligned_cols=189 Identities=13% Similarity=0.199 Sum_probs=101.0
Q ss_pred CcccCCCCCCCcccccccccc--cc-----cccC-CCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCee-CC
Q psy1095 37 PRSISPLSSRTFTPYSLNSAI--RT-----RRLT-SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-AT 107 (325)
Q Consensus 37 i~~v~~~d~G~Y~c~~~~~~~--~~-----~~~~-~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~-~~ 107 (325)
.-.+...+.|.|.-.....+. .. ..+. ....+.+......+..|+.|.|.-...+.....++|...+.. ..
T Consensus 1661 ~~~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~ 1740 (2740)
T TIGR00864 1661 GAKLNPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE 1740 (2740)
T ss_pred eeEEecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc
Confidence 335666788888755322221 11 1111 222333344445567799999987666666678899865532 11
Q ss_pred CCCcEEEEecCCeEEEEEccCCCCCCeEEEEEE--EeCCeeEEEEEEEEEECCCcccCCCeeeecCc-C-eeEecCCcEE
Q psy1095 108 PNARVTIREKEDLRFLEISEVTLEDAGLYTIKV--ENNYGSVEATARLEIMDPRAIISRPKVLNGLE-N-LRCCDGDSVT 183 (325)
Q Consensus 108 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~-~-~~v~~g~~v~ 183 (325)
....+. .-+-...|.|...+ .|..+....+..+.|..+. ....+..... . ..+..|..+.
T Consensus 1741 ~s~p~~-------------tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV---~GL~i~~~~~~~~~~~~ag~~v~ 1804 (2740)
T TIGR00864 1741 TSEPFM-------------SHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPI---SGLKIRAADAGEQNFFAADSSVC 1804 (2740)
T ss_pred cCCCce-------------EEEccCCceEEEEEEEEccccccceeEEEEEEecc---ccceEecCCCCcccceecCcEEE
Confidence 111100 01234567887654 5777777777777777652 2233332221 1 1455677787
Q ss_pred EEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEE--EEeCCCcEEeEEEEE
Q psy1095 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR--VANELGEVVTSACLI 261 (325)
Q Consensus 184 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~ 261 (325)
|.-.+....+ ..+.|..++..-..+.. .. .+..++|.|+-. |.|..+....+..+.
T Consensus 1805 F~a~vstGsn--Vsw~W~f~~g~s~~gk~---------------v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~ 1862 (2740)
T TIGR00864 1805 FQGELATGTN--VSWCWAIDGGSSKMGKH---------------AC-----MTFPDAGTFAIRLNASNAVSGKSASREFF 1862 (2740)
T ss_pred EEEEccCCCe--eEEEEEeCCCCccccce---------------eE-----EecCCCeEEEEEEEEEcccCcceeeeeEE
Confidence 7766543334 67788776432111111 11 334567888764 557666665555555
Q ss_pred EE
Q psy1095 262 VD 263 (325)
Q Consensus 262 v~ 263 (325)
|+
T Consensus 1863 VQ 1864 (2740)
T TIGR00864 1863 AE 1864 (2740)
T ss_pred EE
Confidence 53
No 399
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=93.14 E-value=1.3 Score=28.46 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=33.3
Q ss_pred CCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE-EeCCCcEEeEEEEEE
Q psy1095 195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV-ANELGEVVTSACLIV 262 (325)
Q Consensus 195 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~-~~~~~~~~~~~~l~v 262 (325)
.+.+.|...+....... ..+.....+..|+|.+.|.| .+..........+.+
T Consensus 26 ~~~~~l~~~~~k~~~~~----------------~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETK----------------KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEES----------------SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccccccc----------------eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 36777776655443221 24556677789999999999 565555555555544
No 400
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.59 E-value=0.46 Score=32.10 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=25.9
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCeeE-EEEEEEEE
Q psy1095 121 RFLEISEVTLEDAGLYTIKVENNYGSV-EATARLEI 155 (325)
Q Consensus 121 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 155 (325)
-+|.|..+++.|+|.|.-++++..|.. .+.+.+.|
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 469999999999999999999988854 34444444
No 401
>KOG1026|consensus
Probab=92.24 E-value=0.45 Score=44.17 Aligned_cols=202 Identities=12% Similarity=0.081 Sum_probs=101.8
Q ss_pred eEecCCCeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy1095 75 KICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154 (325)
Q Consensus 75 ~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 154 (325)
..+..|..+++.|...+.|.|...|+.++............-. . ....+. ++.|...+..+.....+.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~-~~~~~~--------~~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-S-ECEVLE--------NDLCIAENAVARSNPSILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-c-cceeee--------chhhHHHHhhhhcCceeeeE
Confidence 4467789999999999999999999987655443221110000 0 011111 17888887776655555555
Q ss_pred EECCCcccCCCeeeecCcCeeEecCCcEEEEEEEEecC-CCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeC
Q psy1095 155 IMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233 (325)
Q Consensus 155 v~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 233 (325)
+..++..... ..+. ++ .-.|...+.+ ++.+...|..++..+............. ..-+...
T Consensus 272 ~~~p~~~~~~----~~~~------~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~------~~C~~~~ 333 (774)
T KOG1026|consen 272 VDLPKAEVLL----CSPL------SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGK------EQCLPWN 333 (774)
T ss_pred EecccccccC----CCCc------cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccC------cCCcccC
Confidence 4433111000 0000 00 2234433322 2226778888776654433322221111 0122333
Q ss_pred CCCCCCCeEEEEEEEeCCCcEEeEEEEEEEeeCC-eecCCCCceEEEEeCCEEEEEEcCCCCCCCeEEEEEEE
Q psy1095 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG-KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305 (325)
Q Consensus 234 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 305 (325)
..+-.+.|.|+|.+.+..|.........+...+. ..+..+..+.....+ .....++....++...++|.+-
T Consensus 334 ~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P~~~~~~~~~~~~~~~~~-~ps~~~~~~~~~~~~~~~~i~g 405 (774)
T KOG1026|consen 334 DPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRPWMYCFDNDKTFEPSLCD-IPSCDIKDKKSEDPTGISAIVG 405 (774)
T ss_pred cCcccccCcceeeecccCccccccCcCccccCCCccccccccccCcccCC-CCCcccccccccCCcceEEEec
Confidence 3356678999999999888776655554433332 111111111111111 2235555666666666766664
No 402
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=91.60 E-value=0.67 Score=31.34 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=31.0
Q ss_pred EEEeCCEEEEEEcCCCCCCCeEEEEEEECCCeeEE-eEEEEEE
Q psy1095 278 IITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS-CYASVAV 319 (325)
Q Consensus 278 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V 319 (325)
+.+......|.|+.+...|+|.|.-+++|..|... ..+.+.|
T Consensus 64 ~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 64 FNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred EeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 34455555899999999999999999999999763 3466665
No 403
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=91.15 E-value=3.1 Score=27.51 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=50.9
Q ss_pred eeEecCCceEecCCCeEEEEEEEEecCCC-eeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEEeCCe
Q psy1095 67 RFYAVPHNKICDLGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYG 145 (325)
Q Consensus 67 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 145 (325)
.+.+.|....|..|+++.+.|...- +.| .+-|.-. -.+..+.....=..+.+.+++. | ..-.|.+.-...
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~------L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~ 75 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETS------LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGE 75 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEESS-SS-SEEEEESS------SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTE
T ss_pred EEEEECCccEECCCCCEEEEEcCCC-CCCCcceEEEe------cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCe
Confidence 3556788888999999999999742 333 3344321 0111122222234577788886 4 466899877655
Q ss_pred eEEEEEEEEEECCC
Q psy1095 146 SVEATARLEIMDPR 159 (325)
Q Consensus 146 ~~~~~~~l~v~~~~ 159 (325)
...++..|+|+..|
T Consensus 76 Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 76 QSSASANITVYKPP 89 (91)
T ss_dssp EEEEEEEEEEEB--
T ss_pred EEEeEEeeEEeCCC
Confidence 66778888988764
No 404
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.00 E-value=2.9 Score=26.93 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=20.6
Q ss_pred EEEccCCCCCCeEEEEEEE-eCCeeEEEEEEEE
Q psy1095 123 LEISEVTLEDAGLYTIKVE-NNYGSVEATARLE 154 (325)
Q Consensus 123 l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~ 154 (325)
..+...+..|+|.+.|.+. +..-.......+.
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence 4556677899999999994 4433333344443
No 405
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=90.89 E-value=6.3 Score=30.62 Aligned_cols=103 Identities=16% Similarity=0.244 Sum_probs=51.7
Q ss_pred CeeEEeeCCeeCCCCC---cEEEEecCC---eEEEEE-ccCCCCCCeEEEEEEEeCCe-eEEEEEEEEEECCCcccCCCe
Q psy1095 95 PWTSWSKDGKPATPNA---RVTIREKED---LRFLEI-SEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPK 166 (325)
Q Consensus 95 ~~v~W~~~~~~~~~~~---~~~~~~~~~---~~~l~i-~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~p~ 166 (325)
..++||.|+.++.... ......++. .++|.+ .+...+..-+.+|.+.-... ...... .....|.+..+|.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~--~a~~~P~Vy~~P~ 84 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRF--NATATPSVYPKPR 84 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEe--ecccccceecCCE
Confidence 3679999999886432 222222221 234555 22333444588999854322 122221 2223333344455
Q ss_pred eeecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCEEe
Q psy1095 167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207 (325)
Q Consensus 167 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~ 207 (325)
+.... ..| ...|.+.=-|.....+.|.-++...
T Consensus 85 vsv~F-----~~g---~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 85 VSVRF-----EDG---YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEEe-----cCC---EEEEEcceeeCCCeEEEEEECCccC
Confidence 54322 223 4457665444333789999877653
No 406
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=88.89 E-value=5 Score=26.54 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=48.8
Q ss_pred eecCcCeeEecCCcEEEEEEEEecCCCCCeeEEeeCCE--EeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEE
Q psy1095 168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR--LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245 (325)
Q Consensus 168 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 245 (325)
...+....|..|+.+.+.|..+=..+ ..+.|.-.-. .+..+.. =..+.|.+++. | ....|
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p--~~~GLET~L~k~~~~~g~~--------------W~~f~LsnV~~-d-s~~~C 68 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQP--EKIGLETSLSKTELDSGPQ--------------WKAFQLSNVTE-D-SSPLC 68 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS---SEEEEESSSEEEEEEEETT--------------EEEEEEEEE-S-C-EEEEE
T ss_pred EEECCccEECCCCCEEEEEcCCCCCC--CcceEEEecCCcccCCCCc--------------EEEEEEEcccc-C-CeEEE
Confidence 34445667889999999998742222 3455643211 1111111 13577788875 4 47789
Q ss_pred EEEeCCCcEEeEEEEEEEeeCC
Q psy1095 246 RVANELGEVVTSACLIVDVVKG 267 (325)
Q Consensus 246 ~~~~~~~~~~~~~~l~v~~~~~ 267 (325)
.+.-.......++.++|+..+.
T Consensus 69 ~~~C~g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 69 FFNCSGEQSSASANITVYKPPE 90 (91)
T ss_dssp EEEETTEEEEEEEEEEEEB--S
T ss_pred EEEcCCeEEEeEEeeEEeCCCC
Confidence 9987666667788888866543
No 407
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=87.71 E-value=6 Score=26.00 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=41.4
Q ss_pred CCCCeeEecCCceEe--cCC--CeEEEEEEEEecCCCeeEEeeCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEE
Q psy1095 63 TSSPRFYAVPHNKIC--DLG--DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138 (325)
Q Consensus 63 ~~~p~~~~~~~~~~v--~~g--~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 138 (325)
..++.|+.++....+ ..+ +...|.+.+.+. ...+.||-|+..+...... ..+.+ .....|.|+-
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~---~~~~~G~h~l 75 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFW---QPDRPGEHTL 75 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEe---CCCCCeeEEE
Confidence 345666655554332 222 245555566554 4489999999998332211 11222 3356788888
Q ss_pred EEEeCCeeE
Q psy1095 139 KVENNYGSV 147 (325)
Q Consensus 139 ~~~~~~~~~ 147 (325)
.+.+..|..
T Consensus 76 ~vvD~~G~~ 84 (89)
T PF06832_consen 76 TVVDAQGRS 84 (89)
T ss_pred EEEcCCCCE
Confidence 887766643
No 408
>PHA03283 envelope glycoprotein E; Provisional
Probab=87.64 E-value=15 Score=32.77 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=50.3
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCC--C------------eee-ecCcCeeEecCCcEEEE
Q psy1095 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR--P------------KVL-NGLENLRCCDGDSVTFE 185 (325)
Q Consensus 121 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~--p------------~~~-~~~~~~~v~~g~~v~l~ 185 (325)
..|.|.+++..++|.|+-...+..+.....+.|.|..+.....+ | .|. ..-......+|+++.+.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls 213 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS 213 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence 45999999999999999998877664555566677653222111 1 111 11122344579988887
Q ss_pred EEEEecC---CCCCeeEEee
Q psy1095 186 CQVQVVP---PNDHDISWFR 202 (325)
Q Consensus 186 C~~~~~~---~~~~~~~W~~ 202 (325)
-...... +-...+.|+.
T Consensus 214 i~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 214 VHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EEEeeccCCCCceEEEEEEE
Confidence 6664322 1125788986
No 409
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=87.62 E-value=3.8 Score=27.04 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=40.9
Q ss_pred cCeeEecCCcEEEEEEEEecCC---CCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEE
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPP---NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 247 (325)
+...+..|+.++..|.....-. ....+.|..++..++.+... . ... ..+.+++.+.....+-.|-|..
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~-~---in~----~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYR-V---IND----TVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEE-E---EST----TEEEEEESS--SSEEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcc-e---eCC----eEEEEEEccCCCCCceEEEEEE
Confidence 3556889999999999863211 22578899988866543321 1 122 2367888887766666666664
No 410
>PHA03052 Hypothetical protein; Provisional
Probab=87.08 E-value=1.3 Score=26.99 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=26.5
Q ss_pred CCceEecCCCeEEEEEEEE-ec--CCCeeEEeeCCeeC
Q psy1095 72 PHNKICDLGDTVRFQCSVT-GQ--PAPWTSWSKDGKPA 106 (325)
Q Consensus 72 ~~~~~v~~g~~v~l~C~~~-~~--p~~~v~W~~~~~~~ 106 (325)
|..+.+..|..++|.|.+. +. ..+.|.|.-|+..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 4566788999999999984 32 24578898888766
No 411
>PHA03052 Hypothetical protein; Provisional
Probab=86.19 E-value=4.6 Score=24.74 Aligned_cols=40 Identities=30% Similarity=0.625 Sum_probs=29.2
Q ss_pred cCeeEecCCcEEEEEEEEecCC-CCCeeEEeeCCEEeccCC
Q psy1095 172 ENLRCCDGDSVTFECQVQVVPP-NDHDISWFRNNRLIKLDS 211 (325)
Q Consensus 172 ~~~~v~~g~~v~l~C~~~~~~~-~~~~~~W~~~~~~~~~~~ 211 (325)
....+..|..++|.|.+.-.++ ..+-+.|..|+..+...+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d 45 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD 45 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence 3456778999999999975443 346789999988875443
No 412
>PHA03189 UL14 tegument protein; Provisional
Probab=85.76 E-value=12 Score=30.69 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=40.4
Q ss_pred cCCceEecCCCeEEEEEEEEe--cCCCeeE-----Eee----------CCeeCCC-------CCcEEEEecCCeEEEEEc
Q psy1095 71 VPHNKICDLGDTVRFQCSVTG--QPAPWTS-----WSK----------DGKPATP-------NARVTIREKEDLRFLEIS 126 (325)
Q Consensus 71 ~~~~~~v~~g~~v~l~C~~~~--~p~~~v~-----W~~----------~~~~~~~-------~~~~~~~~~~~~~~l~i~ 126 (325)
.|.+..+.+|+.+++.|.+.. .|...|. |-- .|..+.. ..+......+-...|+++
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLt 137 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLT 137 (348)
T ss_pred CCCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEE
Confidence 355666889999999999854 3443332 211 1111211 112222222223334332
Q ss_pred -cCCCCCCeEEEEEEEeCC
Q psy1095 127 -EVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 127 -~~~~~d~G~Y~C~~~~~~ 144 (325)
++..+-+|.|.|...|..
T Consensus 138 F~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 138 FRVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEEecccceEEEEecccc
Confidence 566677999999998764
No 413
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=81.72 E-value=5.8 Score=35.02 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcccCCCCCCCcccccccccc
Q psy1095 27 TPRSTPRSTPPRSISPLSSRTFTPYSLNSAI 57 (325)
Q Consensus 27 ~~~~~~~~l~i~~v~~~d~G~Y~c~~~~~~~ 57 (325)
....+.+.|.|.+++.+|+|.|+=+..+...
T Consensus 83 ~~~~~~~~l~i~~a~~~~~GvY~l~~~~~~~ 113 (439)
T PF02480_consen 83 RLTFNKGGLSILNATEQDSGVYTLYVRNDSG 113 (439)
T ss_dssp -------------------------------
T ss_pred ceeecCCceEEeccccccCeeEEEEecCCCC
Confidence 3344457899999999999999988765443
No 414
>PHA03283 envelope glycoprotein E; Provisional
Probab=80.37 E-value=5.8 Score=35.11 Aligned_cols=39 Identities=31% Similarity=0.317 Sum_probs=34.0
Q ss_pred CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEec
Q psy1095 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321 (325)
Q Consensus 283 ~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 321 (325)
....|.|.+++.+++|.|+-...|..+.....+.|+|++
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 345699999999999999999999888777778899987
No 415
>KOG1026|consensus
Probab=80.35 E-value=0.59 Score=43.42 Aligned_cols=71 Identities=7% Similarity=-0.035 Sum_probs=43.1
Q ss_pred CCCcccCCCCCCCcccccccccccccccCCCCeeEecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeCC
Q psy1095 35 TPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT 107 (325)
Q Consensus 35 l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~ 107 (325)
.....+.+.+.+-|.|............ . +.+.....+.+...+++..+.|.+.+.+...+.|.++...+.
T Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (774)
T KOG1026|consen 24 FKGEALATPAECVCSLSENGCSEPTKGV-Y-LPLLEPLNNITEIFIENGQLLCIVSGNDVENYTGLRNLTIVV 94 (774)
T ss_pred cccccCCCCcccccccccccCcCccccc-c-cccccchhhHHHHHHhhhhhcccccCCCcccchhhhccCccc
Confidence 3455777888888877654443333333 1 222222334445567888889998877666888888765443
No 416
>PHA03189 UL14 tegument protein; Provisional
Probab=80.21 E-value=13 Score=30.44 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=17.4
Q ss_pred EEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095 228 ARLKIPHVYPEDEGEFTCRVANELGEV 254 (325)
Q Consensus 228 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 254 (325)
.+|++. +..+-+|.|.|...|.....
T Consensus 134 ltLtF~-v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 134 LTLTFR-VSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEEEEE-EEecccceEEEEecccccee
Confidence 344443 44567999999998865433
No 417
>PHA03286 envelope glycoprotein E; Provisional
Probab=77.99 E-value=48 Score=29.12 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=48.2
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCeeEE-EEEEEEEECC----CcccC---CC-----eee-ecCcCeeEecCCcEEEEE
Q psy1095 121 RFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDP----RAIIS---RP-----KVL-NGLENLRCCDGDSVTFEC 186 (325)
Q Consensus 121 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~----~~~~~---~p-----~~~-~~~~~~~v~~g~~v~l~C 186 (325)
..|.|.+++..++|.|+-...|..+... ..+.+.|... +.... .| .+. .........+|+++.+.-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 4599999999999999999987765443 3455566422 11111 01 111 112233456899988776
Q ss_pred EEEecC---CCCCeeEEee
Q psy1095 187 QVQVVP---PNDHDISWFR 202 (325)
Q Consensus 187 ~~~~~~---~~~~~~~W~~ 202 (325)
...... +-...+.|+.
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEeecccCCCceEEEEEEE
Confidence 664211 1125788974
No 418
>PHA03282 envelope glycoprotein E; Provisional
Probab=74.62 E-value=21 Score=31.28 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.0
Q ss_pred CEEEEEEcCCCCCCCeEEEEEEEC
Q psy1095 283 GTSVLTIEDITGDDSGKYQVHVSN 306 (325)
Q Consensus 283 ~~~~l~i~~v~~~d~G~Y~C~a~n 306 (325)
++..|.+.++..+++|-|.|++.-
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred CccceEecCCCcccCceEEEEEEE
Confidence 344799999999999999999863
No 419
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=74.00 E-value=13 Score=24.77 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=41.6
Q ss_pred cEEEEEEE-EecCCCCCeeEEeeC--CEE-eccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095 181 SVTFECQV-QVVPPNDHDISWFRN--NRL-IKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256 (325)
Q Consensus 181 ~v~l~C~~-~~~~~~~~~~~W~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 256 (325)
.+.-.|.+ .|.|+ ..+.|.-+ |.. ..... .........+.+.+-.....|.-..+|.+.........
T Consensus 22 v~VA~CiSa~GrPp--a~ItW~t~l~G~~etq~~~-------~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~ 92 (98)
T cd05890 22 MLVATCVSANGKPP--SVVRWDTRLKGEAEFQEIR-------NQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTD 92 (98)
T ss_pred EEEEEEEcCCCcCC--cEeEEEccCCCceeeeeeC-------CCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccc
Confidence 45678985 56666 89999753 221 11000 11112334466777777778888999999886544444
Q ss_pred EEEE
Q psy1095 257 SACL 260 (325)
Q Consensus 257 ~~~l 260 (325)
++.|
T Consensus 93 ~~~L 96 (98)
T cd05890 93 SVTL 96 (98)
T ss_pred cEEe
Confidence 4444
No 420
>PHA03112 IL-18 binding protein; Provisional
Probab=72.63 E-value=26 Score=25.33 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=19.6
Q ss_pred cCCCeEEEEEEEEec-CC-CeeEEeeCC
Q psy1095 78 DLGDTVRFQCSVTGQ-PA-PWTSWSKDG 103 (325)
Q Consensus 78 ~~g~~v~l~C~~~~~-p~-~~v~W~~~~ 103 (325)
.+++++.|.|.+-+. |. ..+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 458999999998764 53 467999654
No 421
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=72.09 E-value=26 Score=23.40 Aligned_cols=59 Identities=12% Similarity=0.172 Sum_probs=32.7
Q ss_pred EEEEEEE-EecCCCeeEEeeCCeeCCCCCcEEEE-ecCC----eEEEEEccCCCCCCeEEEEEEEeCC
Q psy1095 83 VRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIR-EKED----LRFLEISEVTLEDAGLYTIKVENNY 144 (325)
Q Consensus 83 v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~ 144 (325)
+.-.|.+ .|.|.+.|+|.-+ +......+.. ..++ ...+.+......|.-..+|.+....
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~---l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~ 87 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTR---LKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRN 87 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEcc---CCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecc
Confidence 5568884 6789999999842 1111011111 0111 1224455566677778899987653
No 422
>COG5475 Uncharacterized small protein [Function unknown]
Probab=71.77 E-value=9.8 Score=22.16 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=19.7
Q ss_pred EEEEcCCCCCCCeEEEEEEECCCeeEEeEE
Q psy1095 286 VLTIEDITGDDSGKYQVHVSNQHGSDSCYA 315 (325)
Q Consensus 286 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 315 (325)
..+|...+. .|.|.|.-.+..|.....+
T Consensus 19 ~Mtvs~~ss--~Gmy~C~Wf~g~g~~~~~F 46 (60)
T COG5475 19 RMTVSGYSS--DGMYECRWFDGYGVKREAF 46 (60)
T ss_pred eEEEecccc--CCeEEEEEecCCCcccccc
Confidence 455555443 3999999999999766544
No 423
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=65.82 E-value=17 Score=22.14 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=14.1
Q ss_pred ecCCCeEEEEEEEEecCCCeeEEee
Q psy1095 77 CDLGDTVRFQCSVTGQPAPWTSWSK 101 (325)
Q Consensus 77 v~~g~~v~l~C~~~~~p~~~v~W~~ 101 (325)
+..|++++|. |.+...|.||+
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4457777774 44556799994
No 424
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=63.68 E-value=1.3e+02 Score=28.31 Aligned_cols=163 Identities=7% Similarity=-0.032 Sum_probs=83.7
Q ss_pred CcccCCCCCCCcc--cccccccccc---------ccc--CCCCeeE---ecCCceEecCCCeEEEEEEEEecCCCeeEEe
Q psy1095 37 PRSISPLSSRTFT--PYSLNSAIRT---------RRL--TSSPRFY---AVPHNKICDLGDTVRFQCSVTGQPAPWTSWS 100 (325)
Q Consensus 37 i~~v~~~d~G~Y~--c~~~~~~~~~---------~~~--~~~p~~~---~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~ 100 (325)
+-+..+..+|.|. |.+.+..... -.+ ..++.+. .... .....|+.+.|...+.|.....+...
T Consensus 247 ~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~-s~ql~g~~I~ika~a~GG~~llYrf~ 325 (667)
T PRK14081 247 IVSYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLS-SPQLTDTDIELKAVAEGGKELLYRFI 325 (667)
T ss_pred eEEEEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCC-CCeecCceEEEEEEecCCCceEEEEE
Confidence 4467788999998 7665543321 111 1334332 2222 22457999999999987554444433
Q ss_pred eCCeeCCCCCcEEEEecCCeEEEEEccCCCCCCeEEEEEEE--eCC--e--eEEEEEEEEEECCCcccCCCeeeecCcCe
Q psy1095 101 KDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE--NNY--G--SVEATARLEIMDPRAIISRPKVLNGLENL 174 (325)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~--~--~~~~~~~l~v~~~~~~~~~p~~~~~~~~~ 174 (325)
-.|..+.... + .....+.. .+..+|.|...+. +.. . .....+.+.+...+..+....-...+...
T Consensus 326 I~G~~~e~~~-Y-----~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~ 396 (667)
T PRK14081 326 IKGKESEDSG-Y-----IRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGK 396 (667)
T ss_pred ECCcEEeecc-c-----cccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCC
Confidence 3343332111 0 11112322 4557899988774 211 1 22344555665432211101111222234
Q ss_pred eEecCCcEEEEEEEEecCCCCCeeEEeeCCEEecc
Q psy1095 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL 209 (325)
Q Consensus 175 ~v~~g~~v~l~C~~~~~~~~~~~~~W~~~~~~~~~ 209 (325)
.+..|+.+.+.|.+.+......++.-.++|..+..
T Consensus 397 ~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~ 431 (667)
T PRK14081 397 HILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEK 431 (667)
T ss_pred ceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEE
Confidence 67789999999999876541123333457776653
No 425
>PHA03112 IL-18 binding protein; Provisional
Probab=63.47 E-value=46 Score=24.10 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=40.1
Q ss_pred ecCCcEEEEEEEEecCCCCCeeEEeeCC-EEeccCCC-------CceEEEecCCcceeEEEEEeCCCCCC-CCeEEEEEE
Q psy1095 177 CDGDSVTFECQVQVVPPNDHDISWFRNN-RLIKLDSD-------MKPEVQVDSKENLVIARLKIPHVYPE-DEGEFTCRV 247 (325)
Q Consensus 177 ~~g~~v~l~C~~~~~~~~~~~~~W~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~ 247 (325)
.+++.+.|.|.+-+.-+...-+.|..++ +....... .................|.+.+++.+ ..-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 3588999999987653432568899655 22211100 00000001111124456777777644 333788887
Q ss_pred EeCCCc
Q psy1095 248 ANELGE 253 (325)
Q Consensus 248 ~~~~~~ 253 (325)
....+.
T Consensus 116 ~D~~~~ 121 (141)
T PHA03112 116 MDLDGP 121 (141)
T ss_pred ecCCch
Confidence 665443
No 426
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=61.00 E-value=44 Score=21.83 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=35.1
Q ss_pred cEEEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEe
Q psy1095 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256 (325)
Q Consensus 181 ~v~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 256 (325)
...|.+.+.+. . ..+.|+-|+..+....... .+.+. ....|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~~-~--~~~~W~vdg~~~g~~~~~~--------------~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-R--GPVYWFVDGEPLGTTQPGH--------------QLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-C--CcEEEEECCEEcccCCCCC--------------eEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 45666666655 3 4799999999984333221 23332 24578888888777776543
No 427
>PHA03240 envelope glycoprotein M; Provisional
Probab=57.29 E-value=13 Score=28.69 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=19.0
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEee
Q psy1095 74 NKICDLGDTVRFQCSVTGQPAPWTSWSK 101 (325)
Q Consensus 74 ~~~v~~g~~v~l~C~~~~~p~~~v~W~~ 101 (325)
+..+.+|.+|+|.-.--..|...+.||+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEe
Confidence 3457789999986432224666889998
No 428
>PHA03286 envelope glycoprotein E; Provisional
Probab=51.97 E-value=48 Score=29.08 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=31.6
Q ss_pred EEEEEEcCCCCCCCeEEEEEEECCCeeEEeE-EEEEEecc
Q psy1095 284 TSVLTIEDITGDDSGKYQVHVSNQHGSDSCY-ASVAVEGR 322 (325)
Q Consensus 284 ~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~ 322 (325)
...|.|.+++..++|.|+-...|.-|....+ +.|.|+++
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~ 165 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGH 165 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecC
Confidence 3469999999999999999999987765554 67888543
No 429
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=44.61 E-value=65 Score=24.01 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=28.3
Q ss_pred CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEE
Q psy1095 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319 (325)
Q Consensus 283 ~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 319 (325)
....|.|.+.+.+|+|.|.-+++-.......-+.+.+
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 3346999999999999999999876666555555544
No 430
>PHA03282 envelope glycoprotein E; Provisional
Probab=43.98 E-value=40 Score=29.70 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=25.9
Q ss_pred EEEEcCCCCCCCeEEEEEEECCCe--eEEeEEEEEEecc
Q psy1095 286 VLTIEDITGDDSGKYQVHVSNQHG--SDSCYASVAVEGR 322 (325)
Q Consensus 286 ~l~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~~l~V~~~ 322 (325)
+|.|.++.++|+|.|+..+...-- .+.+.+.|.|...
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~ 163 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPR 163 (540)
T ss_pred eEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCC
Confidence 599999999999999988743222 2444466666543
No 431
>PHA03281 envelope glycoprotein E; Provisional
Probab=41.70 E-value=2.8e+02 Score=25.39 Aligned_cols=82 Identities=20% Similarity=0.306 Sum_probs=48.7
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCe-eEEEEEEEEEECCC-cccCCCeeeecC----------cCeeEecCCcEEEEEEE
Q psy1095 121 RFLEISEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPR-AIISRPKVLNGL----------ENLRCCDGDSVTFECQV 188 (325)
Q Consensus 121 ~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v~~~~-~~~~~p~~~~~~----------~~~~v~~g~~v~l~C~~ 188 (325)
..|.|.+++..++|.|+-......| .....+.|.|.... .....|.+.... .+....+|+++.+.-..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L 377 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL 377 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence 3689999999999999988875544 33445566665433 111222222111 12334579988888766
Q ss_pred Eec---CCCCCeeEEee
Q psy1095 189 QVV---PPNDHDISWFR 202 (325)
Q Consensus 189 ~~~---~~~~~~~~W~~ 202 (325)
... .+-...+.|+.
T Consensus 378 ~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 378 QYKIHDAPFDLLLEWLY 394 (642)
T ss_pred eeeccCCCceeEEEEEE
Confidence 532 12125788974
No 432
>PHA03281 envelope glycoprotein E; Provisional
Probab=40.92 E-value=55 Score=29.51 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=31.4
Q ss_pred EEEEcCCCCCCCeEEEEEEECCCeeEEe-EEEEEEeccc
Q psy1095 286 VLTIEDITGDDSGKYQVHVSNQHGSDSC-YASVAVEGRK 323 (325)
Q Consensus 286 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p 323 (325)
.|.|.+++..++|.|+-......|.... .+.|+|++++
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~ 337 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE 337 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc
Confidence 6999999999999999999877775454 6788888744
No 433
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=40.82 E-value=33 Score=20.96 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=30.4
Q ss_pred EEEEEEEecCCCCCeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262 (325)
Q Consensus 183 ~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 262 (325)
+|+|..... .-+.|+-||..+..-. ..++.+.++ .++|+|+-.... ..++-+.|
T Consensus 2 tltC~s~~s----LPiswYcN~TRLlRlt---------------~~Tlt~~~l----tcNFtCV~qSGh---~hSiWItW 55 (71)
T PF11049_consen 2 TLTCPSNAS----LPISWYCNGTRLLRLT---------------QQTLTVVTL----TCNFTCVGQSGH---RHSIWITW 55 (71)
T ss_pred ceecCCCCC----CcccEEECCceeeeec---------------CCeEeeeee----eEEeeecCCCCC---CceEEEEE
Confidence 577876543 3478999887653211 124444333 678999865433 23455555
No 434
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=40.56 E-value=77 Score=23.67 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=24.3
Q ss_pred EEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEE
Q psy1095 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSAC 259 (325)
Q Consensus 228 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 259 (325)
..|.|.+.+.+|+|.|.-++.-...+...-+.
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~ 155 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGANKADVFR 155 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCCCCcEEE
Confidence 46999999999999999988766544443333
No 435
>KOG0200|consensus
Probab=36.22 E-value=3.7e+02 Score=25.28 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=57.2
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCeeEEEEEEEEEECCCcccCCCee-eecCcCeeEecCCcEEEEEEEEecCCCCCeeEE
Q psy1095 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV-LNGLENLRCCDGDSVTFECQVQVVPPNDHDISW 200 (325)
Q Consensus 122 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~p~~-~~~~~~~~v~~g~~v~l~C~~~~~~~~~~~~~W 200 (325)
.+.+..+...+.|.|+|.+.+ . ...+.+. ... ...+.+ ...+.......+..+.+ +...+. ..+.|
T Consensus 14 ~~~~~~~~~~~~~~y~~~~~~--~--~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~ 80 (609)
T KOG0200|consen 14 FLIIDSVVPGDKGFYTCLVSN--I--NLIISLD--DIV--IHRPILLAGENANPNTVVTVGVPL---AFSIPQ--PFIKW 80 (609)
T ss_pred eEEEEEEEecCCccEEEEEec--C--ceeeEee--ccc--CcccccccCCCCCcceeeccccee---eeecCC--Cccee
Confidence 477778889999999999988 1 1111111 110 011111 11122233444555555 322333 66777
Q ss_pred eeCCEEec----cCCCCceEE-----EecCCcceeEEEEEeCCCCCCCCeEEEEEEEe
Q psy1095 201 FRNNRLIK----LDSDMKPEV-----QVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249 (325)
Q Consensus 201 ~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 249 (325)
........ ......... ............+.+.++...+.|.|.|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 81 GTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 66432110 000000000 00000012456788999999999999999876
No 436
>KOG0200|consensus
Probab=32.74 E-value=88 Score=29.34 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=57.8
Q ss_pred CCCCCcccCCCCCCCcccccccccccccccC---CCCeeE-ecCCceEecCCCeEEEEEEEEecCCCeeEEeeCCeeC--
Q psy1095 33 RSTPPRSISPLSSRTFTPYSLNSAIRTRRLT---SSPRFY-AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA-- 106 (325)
Q Consensus 33 ~~l~i~~v~~~d~G~Y~c~~~~~~~~~~~~~---~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~p~~~v~W~~~~~~~-- 106 (325)
..+.+..+...|.|.|+|.+.+......... ..+.+. ..+.......+..+.+ +...+.+.+.|.+.....
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 89 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSNINLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTNLEIECE 89 (609)
T ss_pred ceEEEEEEEecCCccEEEEEecCceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeeeeeccccc
Confidence 4556889999999999999988111111101 111111 2233333444555555 323336667787643211
Q ss_pred ---CCCCc-----------EEEEecCCeEEEEEccCCCCCCeEEEEEEEe
Q psy1095 107 ---TPNAR-----------VTIREKEDLRFLEISEVTLEDAGLYTIKVEN 142 (325)
Q Consensus 107 ---~~~~~-----------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 142 (325)
..... .... ......+.+.++...+.+.|.|....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 90 DGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred ccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCC
Confidence 00000 0001 23455688899999999999998755
No 437
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=32.46 E-value=15 Score=32.55 Aligned_cols=37 Identities=35% Similarity=0.413 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCCCeEEEEEEECCCeeEEeE-EEEEEec
Q psy1095 285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCY-ASVAVEG 321 (325)
Q Consensus 285 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~ 321 (325)
..|.|.+++.+|+|.|+-...|..|..... +.|.|++
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp --------------------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 459999999999999999999877765443 6677665
No 438
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=30.96 E-value=42 Score=19.33 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=14.3
Q ss_pred CCCCCeEEEEEEECCCeeE
Q psy1095 293 TGDDSGKYQVHVSNQHGSD 311 (325)
Q Consensus 293 ~~~d~G~Y~C~a~n~~g~~ 311 (325)
..+.+..|.|.+.|..|..
T Consensus 6 lkdssnsflctvqnkng~~ 24 (65)
T PF13220_consen 6 LKDSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred eecCCCceEEEEecccHhH
Confidence 3445678999999988853
No 439
>PHA03290 envelope glycoprotein I; Provisional
Probab=25.02 E-value=2.1e+02 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=27.9
Q ss_pred CEEEEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEEe
Q psy1095 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320 (325)
Q Consensus 283 ~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 320 (325)
....|.|.+...+|+|.|.-+++-.......-+.|.+.
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~ 164 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLN 164 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEE
Confidence 34469999999999999999998665554444554443
No 440
>PHA03289 envelope glycoprotein I; Provisional
Probab=22.85 E-value=1.8e+02 Score=24.49 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCeEEEEEEECCCeeEEeEEEEEE
Q psy1095 286 VLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319 (325)
Q Consensus 286 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 319 (325)
.|.|.+...+|+|.|.-+++-.......-+.|.|
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv 156 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV 156 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence 6999999999999999999877665555454444
No 441
>PHA03289 envelope glycoprotein I; Provisional
Probab=22.13 E-value=2.8e+02 Score=23.39 Aligned_cols=35 Identities=20% Similarity=0.005 Sum_probs=26.7
Q ss_pred EEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262 (325)
Q Consensus 228 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 262 (325)
..|.|.+.+.+|+|.|.-++.-.......-+.+.+
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv 156 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV 156 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence 47999999999999999999876655444444444
No 442
>PHA03292 envelope glycoprotein I; Provisional
Probab=21.48 E-value=2.7e+02 Score=24.10 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=26.5
Q ss_pred EEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262 (325)
Q Consensus 228 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 262 (325)
..|.|.+.+.+|+|.|.-++.-.......-+.+.+
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsv 162 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAPTADVFGLSA 162 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCccCceeEEEE
Confidence 47999999999999999999876554444444444
No 443
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=20.68 E-value=2.2e+02 Score=17.46 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=34.2
Q ss_pred CeeEEeeCCEEeccCCCCceEEEecCCcceeEEEEEeCCCCCCCCeEEEEEEEeCCCcEEeEEEEEE
Q psy1095 196 HDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262 (325)
Q Consensus 196 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 262 (325)
....|++++..+..- .+...+..+..-+... +.+...|.+++.+....|..-....+.|
T Consensus 7 v~H~W~~~g~~~~~i-----~l~i~g~r~Rt~S~k~---~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVARI-----PLPISGGRWRTWSSKQ---NFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEEE-----EEeccCCCEEEEEEee---cCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 567899998876421 1112222222223333 3337789999999888887665555543
No 444
>PHA03290 envelope glycoprotein I; Provisional
Probab=20.33 E-value=3.2e+02 Score=23.20 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=22.6
Q ss_pred EEEEeCCCCCCCCeEEEEEEEeCCCcE
Q psy1095 228 ARLKIPHVYPEDEGEFTCRVANELGEV 254 (325)
Q Consensus 228 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 254 (325)
..|.|.+.+.+|+|.|.-++.-.....
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ldga~~ 155 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLDHSRL 155 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCcc
Confidence 479999999999999999998665443
Done!