RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1095
(325 letters)
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 194 bits (494), Expect = 1e-60
Identities = 64/293 (21%), Positives = 114/293 (38%), Gaps = 51/293 (17%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P F P + LG++ F+C VTG +W+KD + P + E+ L +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
+VT DAG YT N G +A+L + +P I + + ++ + +E
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVK-----QDEHTRYE 120
Query: 186 CQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C++ P + W+++ I+ S + A L++ ++ ED G++T
Sbjct: 121 CKIGGSPEI---KVLWYKDETEIQESSKFRMSFVESV------AVLEMYNLSVEDSGDYT 171
Query: 245 CRVANELGEVVTSACLIVDV------------------------VKG---------KD-- 269
C N G +S L V ++G KD
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 231
Query: 270 -LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
L S + I++ + + I ++ D G+YQ SN GS +C S+ ++
Sbjct: 232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 107 bits (270), Expect = 1e-27
Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 45/196 (22%)
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
++ P ++ G+S TF+C V P I+W ++NR I+ + K + ++
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAP--IKITWAKDNREIRPGGNYKMTLVENT 60
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV----------------- 264
A L + V D G++TC +N G+ SA L V
Sbjct: 61 ------ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQD 114
Query: 265 --------VKG------------KDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHV 304
+ G ++ + + V +VL + +++ +DSG Y
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 174
Query: 305 SNQHGSDSCYASVAVE 320
N GS S S+ V+
Sbjct: 175 HNAAGSASSSTSLKVK 190
Score = 94.0 bits (234), Expect = 2e-22
Identities = 24/92 (26%), Positives = 33/92 (35%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
P F PH G V +C + G P SW KD + + I + L +
Sbjct: 191 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 250
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
I V D G Y K N+ GS + +
Sbjct: 251 HILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 183 bits (467), Expect = 1e-53
Identities = 57/305 (18%), Positives = 113/305 (37%), Gaps = 54/305 (17%)
Query: 55 SAIRTRRLT--SSPRFYAVPH-NKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR 111
+ +L PRF ++I + R++C + G P W KD +++
Sbjct: 278 KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 337
Query: 112 VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGL 171
+ E + LE+ +++ED+G YT + N GS ++ L++ +P P
Sbjct: 338 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP------PVFRKKP 391
Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK 231
+ G V EC++Q PP +SW ++ R ++ K + +
Sbjct: 392 HPVETLKGADVHLECELQGTPPF--QVSWHKDKRELRSGKKYKIM------SENFLTSIH 443
Query: 232 IPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT------- 271
I +V D GE+ C+ +N++G + + V G+++
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEG 503
Query: 272 -----------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY 314
+ I + L ++GKY + N+ G+ C+
Sbjct: 504 AEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF 563
Query: 315 ASVAV 319
A+++V
Sbjct: 564 ATLSV 568
Score = 180 bits (459), Expect = 2e-52
Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 50/295 (16%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P F + +G+ + QC V G P +W K+ ++ K ++ L I
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
++V D G YT K EN+ G+V ++A L I + P L+++ G V FE
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVI---KERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
C++ P +SW+++ L+K D++++ + A L+I G++ C
Sbjct: 123 CRINGSEP--LQVSWYKDGELLKDDANLQTSFIHNV------ATLQILQTDQSHVGQYNC 174
Query: 246 RVANELGEVVTSACLIVDVVK--------------------------------------- 266
+N LG +SA L + +
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD 234
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
+++ G + V T+ LT+ +T D+G+Y + SN G DSC A + V+
Sbjct: 235 NREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289
Score = 175 bits (446), Expect = 1e-50
Identities = 61/297 (20%), Positives = 107/297 (36%), Gaps = 48/297 (16%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P F + LG V F+C + G SW KDG+ +A + ++ L+I
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI 161
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
+ G Y N G+ ++A+L + + P ++ G+S TF+
Sbjct: 162 LQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV---PPFFDLKPVSVDLALGESGTFK 218
Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
C V P I+W ++NR I+ + K + ++ L + V D G++TC
Sbjct: 219 CHVTGTAP--IKITWAKDNREIRPGGNYKMTLVENTA------TLTVLKVTKGDAGQYTC 270
Query: 246 RVANELGEVVTSACLIVDV-------------------------------------VKGK 268
+N G+ SA L V
Sbjct: 271 YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET 330
Query: 269 DLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
++ + + V +VL + +++ +DSG Y N GS S S+ V+ +
Sbjct: 331 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 387
Score = 173 bits (440), Expect = 9e-50
Identities = 63/291 (21%), Positives = 114/291 (39%), Gaps = 49/291 (16%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P F P + LG++ F+C VTG +W+KD + P + E+ L +
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
+VT DAG YT N G +A+L + +P I + + + + +E
Sbjct: 258 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLE-----PSRIVKQDEHTRYE 312
Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
C++ P + W+++ I+ S + A L++ ++ ED G++TC
Sbjct: 313 CKIGGSPEI--KVLWYKDETEIQESSKFRMSFVESV------AVLEMYNLSVEDSGDYTC 364
Query: 246 RVANELGEVVTSACLIVDV------------------------VKG------------KD 269
N G +S L V ++G ++
Sbjct: 365 EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE 424
Query: 270 LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
L S + I++ + + I ++ D G+YQ SN GSD+C S+ ++
Sbjct: 425 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Score = 100 bits (250), Expect = 1e-23
Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 47/199 (23%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P + LE++ G+ +T +C+V P I+W++ + ++ K + + +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPE--IRIAWYKEHTKLRSAPAYKMQFKNNV--- 60
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
A L I V D GE+TC+ N +G V +SA L++ K
Sbjct: 61 ---ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGF 117
Query: 267 ---------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
G+ L D L + + L I G+Y S
Sbjct: 118 PVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSAS 177
Query: 306 NQHGSDSCYASVAVEGRKI 324
N G+ S A + + ++
Sbjct: 178 NPLGTASSSAKLTLSEHEV 196
Score = 90.6 bits (225), Expect = 2e-20
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-ATPNARVTIREKEDLR 121
+ PRF + +G+ V+ Q ++ G +W KD + + I E++
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA 534
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
L+ S +AG YT +++N G+ E A L +++
Sbjct: 535 TLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 165 bits (420), Expect = 1e-50
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 13/202 (6%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR--EKEDL 120
T +P F + + G T F+ ++G P P SW +DG+ + + ++ +
Sbjct: 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
L I VT ++G Y++K N G +TA L + A P + L+++ G
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA---PPNFVQRLQSMTVRQGS 119
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
V + +V +P + ++R+ I+ D Q+ + +L L I YPED
Sbjct: 120 QVRLQVRVTGIPTP--VVKFYRDGAEIQSSLD----FQISQEGDL--YSLLIAEAYPEDS 171
Query: 241 GEFTCRVANELGEVVTSACLIV 262
G ++ N +G ++A L+V
Sbjct: 172 GTYSVNATNSVGRATSTAELLV 193
Score = 112 bits (282), Expect = 3e-30
Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 45/195 (23%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P L+++ +G + TFE + P ++SWFR+ ++I + ++
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPV--PEVSWFRDGQVISTSTLPGVQISFSDG-- 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
A+L IP V + G ++ + N G+ ++A L+V
Sbjct: 62 --RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS 119
Query: 267 ---------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
G ++ S I G L I + +DSG Y V+ +
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179
Query: 306 NQHGSDSCYASVAVE 320
N G + A + V+
Sbjct: 180 NSVGRATSTAELLVQ 194
Score = 49.3 bits (118), Expect = 3e-07
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 267 GKDLTSDGR--LNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
G+ +++ + I G + LTI +T +SG+Y + +N G + A + V+
Sbjct: 43 GQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE 100
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 160 bits (406), Expect = 2e-48
Identities = 53/201 (26%), Positives = 78/201 (38%), Gaps = 12/201 (5%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKED-LRF 122
+P F N C VTG P P W + GK + + I+E +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
L I+ VT +DA +Y ++ N GSV TA LE+ P A I PK L G+ + G+ V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEVV 122
Query: 183 TFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
+ + P P I+W + LI + QV + + V +D G
Sbjct: 123 SIKIPFSGKPDP---VITWQKGQDLIDNNGH----YQVIVTRSFTS-LVFPNGVERKDAG 174
Query: 242 EFTCRVANELGEVVTSACLIV 262
+ N G + L V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDV 195
Score = 104 bits (260), Expect = 6e-27
Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 48/198 (24%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P L NL + T C+V P + W+R + I D K +Q
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPK--PIVKWYRQGKEIIADGL-KYRIQEFKGGY 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV-------------------- 264
+L I V +D + R N+ G V +A L V+V
Sbjct: 62 ---HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118
Query: 265 ---------VKG---------KD---LTSDGRLNIITVG-GTSVLTIEDITGDDSGKYQV 302
G K + ++G +I TS++ + D+G Y V
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 303 HVSNQHGSDSCYASVAVE 320
N+ G D + V
Sbjct: 179 CAKNRFGIDQKTVELDVA 196
Score = 94.4 bits (235), Expect = 2e-23
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
P+ G+ V + +G+P P +W K N +
Sbjct: 102 IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS 161
Query: 123 LE-ISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
L + V +DAG Y + +N +G + T L++ D
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 163 bits (414), Expect = 2e-48
Identities = 54/318 (16%), Positives = 110/318 (34%), Gaps = 72/318 (22%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
+ P F ++ V +C V + W KD + + + + K+ +
Sbjct: 6 TGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICT 62
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP--KVLNGLENLRC-CDG 179
L I+E + +DAG+Y + ++++ G ++ +L + ++ K+ +L+
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
+ + V D ++W N I+ +K V + L+I P D
Sbjct: 123 EGIQLYSFVTYYVE-DLKVNWSHNGSAIRYSDRVKTGVTGE------QIWLQINEPTPND 175
Query: 240 EGEFTCRVANELGEVVTSACLIVD----------------------------------VV 265
+G++ + + + L +
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 235
Query: 266 KGKDLT-----------------------SDGRLNI-ITVGGTSVLTIEDITGDDSGKYQ 301
+GK L SD N+ G T+ TI ++ DSGKY
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 302 VHVSNQHGSDSCYASVAV 319
+ V N++GS++ +V+V
Sbjct: 296 LVVKNKYGSETSDFTVSV 313
Score = 130 bits (327), Expect = 2e-35
Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 32/224 (14%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQ----------PAPWTSWSKDGKPATPNARVTIR 115
KI ++ Q + G +WS +G + RV
Sbjct: 99 KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG 158
Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI--------------MDPRAI 161
+ +L+I+E T D G Y +++ + + T L A
Sbjct: 159 VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE 218
Query: 162 ISRPKVLNGL-ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVD 220
+R +VL GL + + +G ++ C V PP ++SW +N + + D + +
Sbjct: 219 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKALASDDHCNLKFEAG 276
Query: 221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
A I V D G++ V N+ G + + V +
Sbjct: 277 R-----TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 97.7 bits (243), Expect = 1e-23
Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 55/190 (28%)
Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
+V +C+V + + I W+++ R I +D + + L I
Sbjct: 20 GECNVLLKCKVANIKK-ETHIVWYKDEREISVDEKHDFKDGI--------CTLLITEFSK 70
Query: 238 EDEGEFTCRVANELGEVVTSACLIVDVVK------------------------------- 266
+D G + + ++ G+ + L+ + K
Sbjct: 71 KDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSF 130
Query: 267 ---------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSD 311
G + R+ G L I + T +D GKY + + +
Sbjct: 131 VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH 190
Query: 312 SCYASVAVEG 321
++ +
Sbjct: 191 QKTVDLSGQA 200
Score = 93.8 bits (233), Expect = 4e-22
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LE 124
+P G + C+V G P P SW K+ K + ++ +
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFT 282
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
I+ V+ D+G Y + V+N YGS + + + P
Sbjct: 283 INGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
Score = 52.2 bits (125), Expect = 7e-08
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 233 PHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLT 288
V E C+VAN + T + ++++ D + + G L
Sbjct: 16 WEVTGECNVLLKCKVAN--IKKETH-------IVWYKDEREISVDEKHDF--KDGICTLL 64
Query: 289 IEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
I + + D+G Y+V + + G D + E K
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFK 99
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 160 bits (407), Expect = 2e-47
Identities = 54/301 (17%), Positives = 97/301 (32%), Gaps = 58/301 (19%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
+ + +G++ F C+ G+P ++ G+ RV ++++
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 123 LEISEVTLEDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
L I +EDAG+Y + + G EAT LEI G+
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVV------SPQEFKQGED 115
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
C+V P +SW +N + SD + + ++ L+I ++ DEG
Sbjct: 116 AEVVCRVSSSPA--PAVSWLYHNEEVTTISDNRFAMLANN-------NLQILNINKSDEG 166
Query: 242 EFTCRVANELGEVVTSACLIVDVVK----------------------------------- 266
+ C E + +IV V
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI 226
Query: 267 -----GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
GK + + + + LT+ +I D G Y +N+ G D A + V
Sbjct: 227 SWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
Query: 322 R 322
+
Sbjct: 285 Q 285
Score = 86.0 bits (213), Expect = 2e-19
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 52 SLNSAIRTRRLTSSPRFYAV--PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
++ + P N + G+ + F C +G P P SW ++GK N
Sbjct: 179 EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN 238
Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ ++ L + + D G Y + N G E A L++
Sbjct: 239 EKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 156 bits (395), Expect = 7e-47
Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 12/200 (6%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
+P + LG+ + C + G+P P W + GK + + + L
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
+ ED G+YT N G VE +++L + + E G ++
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPL---KEKYYGAVGSTLR 122
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV-YPEDEGE 242
P ++WF +L++ + + +++ E+ L + +V G+
Sbjct: 123 LHVMYIGRPVP--AMTWFHGQKLLQNSEN----ITIENTEHY--THLVMKNVQRKTHAGK 174
Query: 243 FTCRVANELGEVVTSACLIV 262
+ +++N G V + +
Sbjct: 175 YKVQLSNVFGTVDAILDVEI 194
Score = 111 bits (279), Expect = 9e-30
Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 50/201 (24%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
P + ++++ G++ CQ+ P P DI W+R + + K
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLP---DIKWYRFGKELIQSRKYKMSSDGR- 61
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD----------------VV 265
L + EDEG +TC NE+GEV TS+ L++
Sbjct: 62 -----THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGA 116
Query: 266 KGKD-----------------------LTSDGRLNIITVGGTSVLTIEDIT-GDDSGKYQ 301
G L + + I + L ++++ +GKY+
Sbjct: 117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 302 VHVSNQHGSDSCYASVAVEGR 322
V +SN G+ V ++ +
Sbjct: 177 VQLSNVFGTVDAILDVEIQDK 197
Score = 90.5 bits (225), Expect = 6e-22
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 64 SSPRFYA---VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
++P+F+ + +G T+R G+P P +W K + +TI E
Sbjct: 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHY 158
Query: 121 RFLEISEVTLE-DAGLYTIKVENNYGSVEATARLEIMD 157
L + V + AG Y +++ N +G+V+A +EI D
Sbjct: 159 THLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 157 bits (397), Expect = 8e-46
Identities = 49/315 (15%), Positives = 100/315 (31%), Gaps = 65/315 (20%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P V N D ++ F+C P SWSKD + R+ + K + +
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTF 62
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR------PKVLNGLENLRCCDG 179
++ ++D G+Y+ V + G + E R + + + +
Sbjct: 63 KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEK 122
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
V F Q + + + +++ N + I ++ N I + + + ED
Sbjct: 123 GQVRFWMQAEKLSG-NAKVNYIFNEKEIFEGPK----YKMHIDRNTGIIEMFMEKLQDED 177
Query: 240 EGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGR---------------LNIITVGGT 284
EG +T ++ + ++ L+ DV K ++ + L+ G
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 237
Query: 285 SV--------------------------------------LTIEDITGDDSGKYQVHVSN 306
+V L I + + D+G Y+V + +
Sbjct: 238 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKD 297
Query: 307 QHGSDSCYASVAVEG 321
G D + E
Sbjct: 298 DRGKDKSRLKLVDEA 312
Score = 76.2 bits (187), Expect = 5e-16
Identities = 21/210 (10%), Positives = 57/210 (27%), Gaps = 60/210 (28%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P + N+ S+ FEC + SW ++ + ++ V+
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDKMTPKS---EFSWSKDYVSTEDSPRLE--VESKGN-- 56
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
++ + +D G ++C V + G + ++ +
Sbjct: 57 --KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSE 114
Query: 267 -------------------------------GKDLTSDGRLNIITVGGTSV--LTIEDIT 293
K++ + + T + + +E +
Sbjct: 115 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 174
Query: 294 GDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
+D G Y + + ++ + + K
Sbjct: 175 DEDEGTYTFQLQDGKATNHSTVVLVGDVFK 204
Score = 56.9 bits (137), Expect = 2e-09
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 231 KIPHVYPEDEGE---FTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVL 287
++ +D F C E S RL + + G + +
Sbjct: 8 EVVVNVDDDGVISLNFECDKMTPKSEFSWS-------KDYVSTEDSPRLEVESKGNKTKM 60
Query: 288 TIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
T +D+ DD G Y V++ G S Y E ++++
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLL 98
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 149 bits (378), Expect = 4e-44
Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 11/202 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE-DLRFLE 124
PRF P ++ G F C TG P P W+K GK + I + L
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAII-SRPKVLNGLENLRCCDGDSV 182
I + T D +Y NN G + + RL ++ I P + G + +
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 183 TFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
T C P P +I+WF++ + ++ Q+ S+ L+I D+G
Sbjct: 127 TMLCAASGNPDP---EITWFKDFLPVDTSNNNGRIKQLRSESI---GALQIEQSEESDQG 180
Query: 242 EFTCRVANELGEVVTSAC-LIV 262
++ C N G ++ L V
Sbjct: 181 KYECVATNSAGTRYSAPANLYV 202
Score = 94.5 bits (235), Expect = 3e-23
Identities = 42/209 (20%), Positives = 65/209 (31%), Gaps = 55/209 (26%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
+ P+ + G +F CQ P P I W + + + E S
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRP---KIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD------------------ 263
L I L+ P DE + C +N +GE+ S L V
Sbjct: 62 GSVLRIQPLRT----PRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117
Query: 264 --VVKGKDLT--------------------------SDGRLNIITVGGTSVLTIEDITGD 295
V + + T ++GR+ + L IE
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177
Query: 296 DSGKYQVHVSNQHGSD-SCYASVAVEGRK 323
D GKY+ +N G+ S A++ V G K
Sbjct: 178 DQGKYECVATNSAGTRYSAPANLYVRGTK 206
Score = 80.6 bits (199), Expect = 3e-18
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 52 SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP---ATP 108
L + P P K+ + T C+ +G P P +W KD P +
Sbjct: 95 RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNN 154
Query: 109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPR 159
N R+ E + L+I + D G Y N+ G+ A A L + +
Sbjct: 155 NGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 152 bits (385), Expect = 5e-44
Identities = 64/300 (21%), Positives = 102/300 (34%), Gaps = 57/300 (19%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
PRF P ++I G F C TG P P +W+K GK TI E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 125 ISEV-TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS-RPKVLNGLENLRCCDGDSV 182
I + T D +Y +N+ G + A+L ++ + S P + G + +
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
T C P +I+WF++ + + Q+ S L+I D+G+
Sbjct: 127 TMLCAASGNPD--PEITWFKDFLPVDPSASNGRIKQLRS------GALQIESSEETDQGK 178
Query: 243 FTCRVANELGEVVTS-ACLIVDVVK----------------------------------- 266
+ C N G +S A L V V
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVK 238
Query: 267 ----GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+DLT + + + G +VL + D+ DS Y + G A + V+
Sbjct: 239 WMQGAEDLTPEDDMPV----GRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSL 292
Score = 133 bits (336), Expect = 5e-37
Identities = 41/212 (19%), Positives = 69/212 (32%), Gaps = 18/212 (8%)
Query: 52 SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR 111
L + + P P K+ + T C+ +G P P +W KD P P+A
Sbjct: 95 KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSAS 154
Query: 112 VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNG 170
++ L+I D G Y N+ G + A L + R P+
Sbjct: 155 NGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV---RVQNVAPRFSIL 211
Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
+ G +V C P + W + + + DM + R
Sbjct: 212 PMSHEIMPGGNVNITCVAVGSPM--PYVKWMQGAEDLTPEDDMP------------VGRN 257
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ +D +TC + LG + A + V
Sbjct: 258 VLELTDVKDSANYTCVAMSSLGVIEAVAQITV 289
Score = 91.0 bits (226), Expect = 3e-21
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 6/117 (5%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP 108
YS + + R +PRF +P + G V C G P P+ W + + TP
Sbjct: 189 VRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP 248
Query: 109 NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
+ + + ++D+ YT ++ G +EA A++ + ++
Sbjct: 249 EDDMPVGR------NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299
Score = 87.6 bits (217), Expect = 5e-20
Identities = 34/204 (16%), Positives = 56/204 (27%), Gaps = 50/204 (24%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
P+ + ++ G +F CQ P ++W + + + E +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPK--PRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK---------------- 266
L I L+ P DE + C N +GE+ A L V
Sbjct: 63 AVLRIQPLRT----PRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118
Query: 267 ---------------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGK 299
+ I + L IE D GK
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 300 YQVHVSNQHGS-DSCYASVAVEGR 322
Y+ +N G S A++ V +
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQ 202
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 148 bits (375), Expect = 6e-44
Identities = 41/202 (20%), Positives = 76/202 (37%), Gaps = 16/202 (7%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
+ + +G++ F C+ G+P ++ G+ RV ++++ L
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 124 EISEVTLEDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
I +EDAG+Y + + G EAT LE I + + G+
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLE------IYQKLTFREVVSPQEFKQGEDA 114
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
C+V P +SW +N + SD + + ++ L+I ++ DEG
Sbjct: 115 EVVCRVSSSPA--PAVSWLYHNEEVTTISDNRFAMLANNN-------LQILNINKSDEGI 165
Query: 243 FTCRVANELGEVVTSACLIVDV 264
+ C E + +IV V
Sbjct: 166 YRCEGRVEARGEIDFRDIIVIV 187
Score = 79.4 bits (196), Expect = 6e-18
Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 50/197 (25%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
+ +V L + G+S F C P + I + +
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIISTQRVVVQ------ 52
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI--------------VDVVKGK 268
+ V +RL I + ED G + C+ + G+ + ++ + +G+
Sbjct: 53 KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGE 112
Query: 269 DLT-------------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVH 303
D SD R + + L I +I D G Y+
Sbjct: 113 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDNR---FAMLANNNLQILNINKSDEGIYRCE 169
Query: 304 VSNQHGSDSCYASVAVE 320
+ + + + V
Sbjct: 170 GRVEARGEIDFRDIIVI 186
Score = 74.4 bits (183), Expect = 4e-16
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 5/101 (4%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARV 112
A + F V + G+ C V+ PAP SW + + R
Sbjct: 86 EATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRF 145
Query: 113 TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARL 153
+ +L+ I + D G+Y + +
Sbjct: 146 AMLANNNLQ---ILNINKSDEGIYRCEGRVEARGEIDFRDI 183
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 152 bits (386), Expect = 2e-43
Identities = 62/295 (21%), Positives = 100/295 (33%), Gaps = 56/295 (18%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP---ATPNARVTIREKEDLRF 122
RF + + +GDTV +C V G P P W K+ + ++RV +
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS---GA 178
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
L+IS + D+G+Y N + A + I+ + + L N+ +G
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
EC V PP +W R +I+L S + + NL+ I +V +D G
Sbjct: 239 AVLECCVSGYPP--PSFTWLRGEEVIQLRSK---KYSLLGGSNLL-----ISNVTDDDSG 288
Query: 242 EFTCRVANELGEVVTSACLIV-------------DVVKGKD------------------- 269
+TC V + + SA L V + D
Sbjct: 289 TYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK 348
Query: 270 ----LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+ I+ L I + D G YQ N+ G+ A + V
Sbjct: 349 NGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 137 bits (347), Expect = 1e-37
Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 19/202 (9%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
L F P N I G +C V+G P P +W + + ++
Sbjct: 217 GLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN 276
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
L IS VT +D+G YT V ++ A+A L ++ P P LN NL +
Sbjct: 277 --LLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP------PWFLNHPSNLYAYESM 328
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
+ FEC V P ++W +N ++ Q+ NL I V DE
Sbjct: 329 DIEFECAVSGKPV--PTVNWMKNGDVVIPSDYF----QIVGGSNLRIL-----GVVKSDE 377
Query: 241 GEFTCRVANELGEVVTSACLIV 262
G + C NE G +SA LIV
Sbjct: 378 GFYQCVAENEAGNAQSSAQLIV 399
Score = 129 bits (325), Expect = 1e-34
Identities = 64/318 (20%), Positives = 102/318 (32%), Gaps = 64/318 (20%)
Query: 52 SLNSAIRTRRLT--SSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKP--A 106
L S+ S F + P + + G V CS + P W KDG
Sbjct: 6 ELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILAL 65
Query: 107 TPNARVTIREKEDLRF--LEISEVTLEDAGLYTIKVENNYGS--VEATARLEIMDPRAII 162
+ R L + S D GLY + + TA++ + P +
Sbjct: 66 GMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFL 125
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
S+ + + GD+V +C+V P I W +N + + V V
Sbjct: 126 SQTESITAFM------GDTVLLKCEVIGDPMP--TIHWQKNQQDLNPIPG-DSRVVVLPS 176
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVD------------------ 263
L I+RL+ P D G + C N A + +
Sbjct: 177 GALQISRLQ-----PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231
Query: 264 -VVKGKDLT---------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQ 301
++GKD R ++ G S L I ++T DDSG Y
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291
Query: 302 VHVSNQHGSDSCYASVAV 319
V+ ++ + S A + V
Sbjct: 292 CVVTYKNENISASAELTV 309
Score = 95.3 bits (237), Expect = 3e-22
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P F P N + F+C+V+G+P P +W K+G P+ I +LR I
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLR---I 369
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
V D G Y EN G+ +++A+L + P
Sbjct: 370 LGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
Score = 79.1 bits (195), Expect = 1e-16
Identities = 32/221 (14%), Positives = 57/221 (25%), Gaps = 48/221 (21%)
Query: 141 ENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISW 200
+ S +S P + G +V C + I W
Sbjct: 4 GSELESSHHHHHHGGRRSLHFVSEPSDAVTMR------GGNVLLNCSAESDRGV-PVIKW 56
Query: 201 FRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACL 260
++ ++ L D + Q +L+I + + DEG + C + + S
Sbjct: 57 KKDGLILALGMDDR--KQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTA 114
Query: 261 IVDV--------------------------------------VKGKDLTSDGRLNIITVG 282
V V +DL + + V
Sbjct: 115 KVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL 174
Query: 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSD-SCYASVAVEGR 322
+ L I + DSG Y+ N + A V +
Sbjct: 175 PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSD 215
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 157 bits (397), Expect = 6e-43
Identities = 64/300 (21%), Positives = 102/300 (34%), Gaps = 62/300 (20%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK-----EDL 120
P + + G +V +C G P P SW DGK N R + + + +
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
+L I+ V D GLY ++ G E +A+L + I +E G+
Sbjct: 490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ-------MEKKAIVAGE 542
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
++ C V P I W R+NR + ++ +V L+I ++ D+
Sbjct: 543 TLIVTCPVAGYPI--DSIVWERDNRALPINRK----QKVFPNGTLIIENVERNS----DQ 592
Query: 241 GEFTCRVANELGEVVT-SACLIVDV-------------------------VKGKD----- 269
+TC N+ G S + V V V G D
Sbjct: 593 ATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNI 652
Query: 270 --------LTSDGRLNIITVG-GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
++ D + VG SVLTIE + +G + H N G + V
Sbjct: 653 DWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712
Score = 152 bits (386), Expect = 2e-41
Identities = 58/300 (19%), Positives = 88/300 (29%), Gaps = 70/300 (23%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI--REKEDLRFLEISEVT 129
K T+ C G P P W K + T V + R K+ L I +
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314
Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
+ED+G Y V N+ G L + P + P G F CQ
Sbjct: 315 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF------GRPAVFTCQYT 368
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
P +SW ++ + I L+I V ED+G + C V N
Sbjct: 369 GNPI--KTVSWMKDGKAIGHSES----------------VLRIESVKKEDKGMYQCFVRN 410
Query: 250 ELGEVVTSACLIVDVVK---------------------------------------GKDL 270
+ SA L + GK +
Sbjct: 411 DRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI 470
Query: 271 TSDGRLNI-----ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
++ R + + S L I + +D G Y+ ++ G A + V G I
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI 530
Score = 148 bits (374), Expect = 7e-40
Identities = 68/296 (22%), Positives = 99/296 (33%), Gaps = 56/296 (18%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
T+ P + D G F C TG P SW KDGK + V
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV---------- 390
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
L I V ED G+Y V N+ S EA+A L++ P + + G SV
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGG---RFDPPVIRQAFQEETMEPGPSV 447
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
+C P +ISW + + I + + Q + V++ L I V+ D G
Sbjct: 448 FLKCVAGGNPTP--EISWELDGKKIANNDRYQVG-QYVTVNGDVVSYLNITSVHANDGGL 504
Query: 243 FTCRVANELGEVVTSACLIV------------DVVKGKD--------------------- 269
+ C +++G SA L V +V G+
Sbjct: 505 YKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN 564
Query: 270 --LTSDGRLNIITVGGTSVLTIEDIT-GDDSGKYQVHVSNQHG-SDSCYASVAVEG 321
L + + + G L IE++ D Y NQ G S V V
Sbjct: 565 RALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617
Score = 135 bits (340), Expect = 2e-35
Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 16/214 (7%)
Query: 54 NSAIRTRRLT--SSPRFYAVPHNKIC-DLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPN 109
SA + + PR + +G + CSV G P W+ DG+ + +
Sbjct: 605 YSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISED 664
Query: 110 ARVTI-REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVL 168
+T R L I V AG +T N G + T L + P P+ +
Sbjct: 665 LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP------PRWI 718
Query: 169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIA 228
+ G EC+ P ++W + + + E
Sbjct: 719 LEPTDKAFAQGSDAKVECKADGFPK--PQVTWKKAVGDTPGEYKDLKKSDNIRVEE---G 773
Query: 229 RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L + ++ +EG + C N +G +++ +I
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
Score = 135 bits (340), Expect = 2e-35
Identities = 55/305 (18%), Positives = 94/305 (30%), Gaps = 55/305 (18%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSV---TGQPAPWTSWSKDGKP-----ATPNARV 112
R + + A + + G++ +C + SW D + A + +
Sbjct: 134 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 193
Query: 113 TIREKEDLRFLEISEVTLEDA-GLYTIKVENNYGS---VEATARLEIMDPRAIISRPKVL 168
+ +L I EV ED Y + ++ + AT ++ + PKV+
Sbjct: 194 LVLPSGEL---HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVV 250
Query: 169 N--GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
+ + ++ C Q P W++ V ++ + V
Sbjct: 251 SLAKFDMKTYSGSSTMALLCPAQGYPV--PVFRWYKFIEGTTRKQA----VVLNDRVKQV 304
Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT-- 271
L I ED G++ C V N +G L V V G+
Sbjct: 305 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 364
Query: 272 --------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
DG+ I L IE + +D G YQ V N S A +
Sbjct: 365 CQYTGNPIKTVSWMKDGKA-IGHSESV--LRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
Query: 318 AVEGR 322
+ GR
Sbjct: 422 KLGGR 426
Score = 135 bits (340), Expect = 3e-35
Identities = 52/292 (17%), Positives = 78/292 (26%), Gaps = 55/292 (18%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
+ K G+T+ C V G P W +D + N + + L
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLI--- 582
Query: 125 ISEVTL-EDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
I V D YT +N G S + +++M II E G +
Sbjct: 583 IENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFA-----FEEGPAQVGQYL 637
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
T C V +I W + + I D + + L I V G
Sbjct: 638 TLHCSVPGGDL-PLNIDWTLDGQAISEDLGITTSRVGRR-----GSVLTIEAVEASHAGN 691
Query: 243 FTCRVANELGEVVTSACLIV-------------DVVKGKDLT------------------ 271
FTC N G + L V +G D
Sbjct: 692 FTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKA 751
Query: 272 --------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYA 315
D + + L +++I + G Y N GS
Sbjct: 752 VGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAV 803
Score = 108 bits (272), Expect = 2e-26
Identities = 52/326 (15%), Positives = 88/326 (26%), Gaps = 72/326 (22%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKIC-DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT 113
+A P F P N+I +C +G P P W + A +
Sbjct: 28 AANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-G 86
Query: 114 IREKEDLRFLEISEVTLED------AGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPK 166
+R+ L ED A +Y N +GS+ + + + + +
Sbjct: 87 LRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVN 146
Query: 167 VLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLDSDMKPE-VQVDSKEN 224
+ + G+S +C + + +SW + V
Sbjct: 147 KEHVIR------GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 200
Query: 225 LVIARLKIPHVYPED-EGEFTCRVANELGE---VVTSACLIVD----------------- 263
L I V PED + CR + L + + +V
Sbjct: 201 LHIR-----EVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255
Query: 264 ----VVKGKDLT-------------------------SDGRLNIITVGGTSVLTIEDITG 294
+ LN + L I+D
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 315
Query: 295 DDSGKYQVHVSNQHGSDSCYASVAVE 320
+DSGKY V+N G +S + V
Sbjct: 316 EDSGKYLCVVNNSVGGESVETVLTVT 341
Score = 83.4 bits (206), Expect = 7e-18
Identities = 32/243 (13%), Positives = 65/243 (26%), Gaps = 55/243 (22%)
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA--IISRPKVLNGLENLRCCDGD 180
+ + L+ L+ GS A D + + P + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEP-----TNRIDFSNST 55
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE-D 239
EC+ P +I W R++ D+ Q+ S LV + E
Sbjct: 56 GAEIECKASGNPM--PEIIWIRSDG--TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 111
Query: 240 EGEFTCRVANELGEVVTSACLI--------------VDVVKGKDLT-------------- 271
+ C N+ G +++ + V++G
Sbjct: 112 AQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 171
Query: 272 -----SDGRLNI---------ITVGGTSVLTIEDIT-GDDSGKYQVHVSNQHGSDSCYAS 316
+D N V + L I ++ D YQ ++ ++ ++
Sbjct: 172 VVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 231
Query: 317 VAV 319
Sbjct: 232 TKG 234
Score = 37.6 bits (87), Expect = 0.005
Identities = 16/141 (11%), Positives = 26/141 (18%), Gaps = 45/141 (31%)
Query: 230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK----------------------- 266
+ +P+ + F G +A K
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 267 -----------------GKDLTSDGRLNIITVGGT----SVLTIEDITGDDSGKYQVHVS 305
G + L I+ G + + Y
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 306 NQHGSD-SCYASVAVEGRKII 325
NQ GS S V +
Sbjct: 121 NQFGSIISRDVHVRAVVAQYY 141
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 146 bits (370), Expect = 8e-43
Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 15/220 (6%)
Query: 54 NSAIRTRRLTSSPRF----YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
+ +P + +TV+F+C G P P W K+GK
Sbjct: 4 DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63
Query: 110 ARVTIREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVL 168
R+ + + + L + V D G YT VEN YGS+ T L++++ R+
Sbjct: 64 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE-RSRHRPILQA 122
Query: 169 NGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLI--KLDSDMKPEVQVDSKENL 225
N G V F C+V P I W ++ K D P ++V +
Sbjct: 123 GLPANASTVVGGDVEFVCKVYSDAQP---HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179
Query: 226 VIA---RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ L + +V D GE+ C+V+N +G+ SA L V
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 84.2 bits (208), Expect = 2e-19
Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-----------DGKPATPNARVTI 114
+P N +G V F C V P W K DG P + +
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178
Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
+ L + VT DAG Y KV N G +A L ++ + R K
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
Score = 49.1 bits (117), Expect = 5e-07
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
GK+ + R+ V L +E + D G Y V N++GS + + V R
Sbjct: 57 GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 142 bits (360), Expect = 3e-41
Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 14/211 (6%)
Query: 63 TSSPRF----YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE-K 117
T +P + +TVRF+C G P P SW K+G+ R+ + +
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 68
Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCC 177
L + V D G YT VEN +GS+ T L++++ R+ N
Sbjct: 69 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-RSPHRPILQAGLPANQTAV 127
Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLI--KLDSDMKPEVQVD----SKENLVIARLK 231
G V F C+V I W ++ + K+ D P V V S+ RL+
Sbjct: 128 LGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185
Query: 232 IPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ +V D GE+ CR N +G + L V
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLSV 216
Score = 81.1 bits (200), Expect = 4e-18
Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 22/136 (16%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-----------DGKPATPNARVTI 114
+P N+ LG V F C V P W K DG P + I
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174
Query: 115 REK-EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLEN 173
E E L ++ V+ D G Y + N G E L + PRA +++
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA--EEELVEA--- 229
Query: 174 LRCCDGDSVTFECQVQ 189
++ +
Sbjct: 230 -----DEAGSVHHHHH 240
Score = 48.4 bits (115), Expect = 8e-07
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
G++ + R+ I + L +E + D G Y V N+ GS ++ V R
Sbjct: 53 GREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER 109
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 141 bits (357), Expect = 3e-41
Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 14/203 (6%)
Query: 64 SSPRFYAV--PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
S P N + G+ + F C +G P P SW ++GK N + ++
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNT 58
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
L + + D G Y + N G E A L++ II N +
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLK-------NETTYENGQ 111
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKL-DSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
VT C + P +I+W R + D + +++ K + L I V D
Sbjct: 112 VTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDS 169
Query: 241 GEFTCRVANELGEVVTSACLIVD 263
G + C A+ +G S L ++
Sbjct: 170 GRYDCEAASRIGGHQKSMYLDIE 192
Score = 92.2 bits (229), Expect = 1e-22
Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 52/199 (26%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
+ N G+ +TF C+ P ISWFRN +LI+ + +
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPE--PAISWFRNGKLIEENEKYILKGSNTE-- 59
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV------------DVVKGKDLT 271
L + ++ D G + CR N+ GE A L V + +T
Sbjct: 60 ------LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVT 113
Query: 272 ------------------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQ 301
DGR+ + G+S L I+D+ DSG+Y
Sbjct: 114 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 173
Query: 302 VHVSNQHGSDSCYASVAVE 320
+++ G + +E
Sbjct: 174 CEAASRIGGHQKSMYLDIE 192
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 142 bits (359), Expect = 5e-40
Identities = 66/255 (25%), Positives = 97/255 (38%), Gaps = 19/255 (7%)
Query: 17 RPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKI 76
R + + H + R T + T + TR + AVP
Sbjct: 81 RLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP---- 136
Query: 77 CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT-IREKEDLRFLEISEVTLEDAGL 135
+TVRF+C G P P SW K+G+ R+ I+ + L + V D G
Sbjct: 137 --AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 194
Query: 136 YTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-VVPPN 194
YT VEN +GS+ T L++++ R+ N G V F C+V P
Sbjct: 195 YTCVVENKFGSIRQTYTLDVLE-RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP- 252
Query: 195 DHDISWFRNNRL--IKLDSDMKPEVQVDSKENLVIAR-----LKIPHVYPEDEGEFTCRV 247
I W ++ + K+ D P V V L + +V ED GE+TC
Sbjct: 253 --HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 248 ANELGEVVTSACLIV 262
N +G SA L+V
Sbjct: 311 GNSIGFSHHSAWLVV 325
Score = 134 bits (339), Expect = 4e-37
Identities = 59/328 (17%), Positives = 96/328 (29%), Gaps = 85/328 (25%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
+ GD V C G P T W KDG P+ RV + + L+
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQR----LQ 64
Query: 125 ISEVTLEDAGLYTIKVENNYGSV---------------EATARLEIMDPRAIISRPKVLN 169
+ + ED+G Y+ + + + E D P
Sbjct: 65 VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124
Query: 170 ----GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL 225
+ L ++V F C P ISW +N R + + + + +L
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPT--PSISWLKNGREFRGEHRIGGIKLRHQQWSL 182
Query: 226 VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV----------------------- 262
V+ + P D G +TC V N+ G + + L V
Sbjct: 183 VMESVV-----PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 237
Query: 263 ----------------------DVVKGKDLTSDGRLNI---------ITVGGTSVLTIED 291
V G + DG + T VL++ +
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHN 297
Query: 292 ITGDDSGKYQVHVSNQHGSDSCYASVAV 319
+T +D+G+Y N G A + V
Sbjct: 298 VTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 76.6 bits (188), Expect = 6e-16
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK----DGKPATPNARVTIR------ 115
+P N+ LG V F C V P W K +G P+ +
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 116 ---EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
++L L + VT EDAG YT N+ G +A L ++
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
Score = 56.9 bits (137), Expect = 2e-09
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 17/112 (15%)
Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
P + + L GD+V C P W ++ + +
Sbjct: 8 PGPEPGQQEQLVFGS------GDAVELSCPPPGGGPM-GPTVWVKDGTGLVPSERVL--- 57
Query: 218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
+ RL++ + ED G ++CR + + + D D
Sbjct: 58 -------VGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGD 102
Score = 37.7 bits (87), Expect = 0.004
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
G L R+ + G L + + + +DSG Y ++ +
Sbjct: 47 GTGLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD 96
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 141 bits (356), Expect = 8e-40
Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 10/201 (4%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN-ARVTIREKEDLRF 122
+P F N C VTG P P W + GK + + I+E +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 123 -LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
L I+ VT +DA +Y ++ N GSV TA LE+ P A I PK L G+ + G+
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEV 121
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
V+ + P I+W + LI + + V + + V +D G
Sbjct: 122 VSIKIPFSGKPDP--VITWQKGQDLIDNNGHYQVIVTRS-----FTSLVFPNGVERKDAG 174
Query: 242 EFTCRVANELGEVVTSACLIV 262
+ N G + L V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDV 195
Score = 95.2 bits (237), Expect = 1e-22
Identities = 38/200 (19%), Positives = 60/200 (30%), Gaps = 48/200 (24%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P L NL + T C+V P + W+R + I D K +Q
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPI--VKWYRQGKEIIADGL-KYRIQEFKGGY 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
+L I V +D + R N+ G V +A L V+V
Sbjct: 62 ---HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118
Query: 267 -----------------------GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQV 302
+ ++G +I TS++ + D+G Y V
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 303 HVSNQHGSDSCYASVAVEGR 322
N+ G D + V
Sbjct: 179 CAKNRFGIDQKTVELDVADV 198
Score = 87.5 bits (217), Expect = 5e-20
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
P+ G+ V + +G+P P +W K N + +
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVF 164
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ V +DAG Y + +N +G + T L++ D
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
Score = 47.8 bits (114), Expect = 1e-06
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 267 GKDLTSDGRLNIITV--GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI 324
GK++ +DG I GG L I +T DD+ YQV +NQ GS S AS+ VE
Sbjct: 42 GKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK 101
Query: 325 I 325
I
Sbjct: 102 I 102
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 137 bits (347), Expect = 2e-39
Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 23/201 (11%)
Query: 80 GDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
+ ++ VT +WS +G + RV + +L+I+E T D G Y +
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 139 KVENNYGSVEATARLEIMDPRAIISR---------------PKVLNGLENLRCCDGDSVT 183
++ + + T L + + + + +G ++
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
C V PP ++SW +N + + + + A I V D G++
Sbjct: 137 LTCNVWGDPPP--EVSWLKNEKALAQTDHCNLKFEAGR-----TAYFTINGVSTADSGKY 189
Query: 244 TCRVANELGEVVTSACLIVDV 264
V N+ G + + V +
Sbjct: 190 GLVVKNKYGSETSDFTVSVFI 210
Score = 94.9 bits (236), Expect = 2e-23
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LE 124
+P G + C+V G P P SW K+ K ++ +
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFT 177
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
I+ V+ D+G Y + V+N YGS + + + P
Sbjct: 178 INGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 91.1 bits (226), Expect = 5e-22
Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 65/202 (32%)
Query: 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
+ + V D ++W N I+ +K V + L+I
Sbjct: 15 STAEGIQLYSFVTYYVE-DLKVNWSHNGSAIRYSDRVK--TGVTGE----QIWLQINEPT 67
Query: 237 PEDEGEFTCRVANELGEVVTSACLIVD--------------------------------- 263
P D+G++ + + + L
Sbjct: 68 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 127
Query: 264 -VVKGKDLT-----------------------SDGRLNIITV-GGTSVLTIEDITGDDSG 298
+ +GK L N+ G T+ TI ++ DSG
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187
Query: 299 KYQVHVSNQHGSDSCYASVAVE 320
KY + V N++GS++ +V+V
Sbjct: 188 KYGLVVKNKYGSETSDFTVSVF 209
Score = 51.8 bits (124), Expect = 5e-08
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 266 KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
G + R+ G L I + T +D GKY + + + ++ +
Sbjct: 40 NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 95
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 139 bits (351), Expect = 3e-38
Identities = 65/309 (21%), Positives = 99/309 (32%), Gaps = 60/309 (19%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNA-------RV 112
R T A H K G + C + P P +W K A PNA R+
Sbjct: 96 RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRI 155
Query: 113 TIREKEDLRFLEISEVTLEDAGLYTIKVENNYG-----SVEATARLEIMDPRAIISRPKV 167
T +L F +++ + D Y +N VE + D P
Sbjct: 156 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVP 215
Query: 168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI 227
+++ GD C P ++F+N + + + + + +
Sbjct: 216 QYVSKDMMAKAGDVTMIYCMYGSNPM--GYPNYFKNGKDVNGNPEDRITRHNRTSGK--- 270
Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV--------------DVVKGKDLT- 271
RL PEDEG +TC V N +G+ S L V V +G+D+T
Sbjct: 271 -RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTI 329
Query: 272 ---------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS 310
S GR + S L I+ + D G Y +N+HG
Sbjct: 330 PCKVTGLPAPNVVWSHNAKPLSGGRATVT----DSGLVIKGVKNGDKGYYGCRATNEHGD 385
Query: 311 DSCYASVAV 319
V V
Sbjct: 386 KYFETLVQV 394
Score = 125 bits (315), Expect = 4e-33
Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 21/201 (10%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFL 123
P V + + GD C P + ++ K+GK P R+T + + L
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 272
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
ED G+YT +V+N G + + +L ++ +P+ + + G V
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE-----KVIVVKQGQDV 327
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
T C+V +P ++ W N + + S + V L I V D+G
Sbjct: 328 TIPCKVTGLPA--PNVVWSHNAKPL---SGGRATVTDSG--------LVIKGVKNGDKGY 374
Query: 243 FTCRVANELGEVVTSACLIVD 263
+ CR NE G+ + V+
Sbjct: 375 YGCRATNEHGDKYFETLVQVN 395
Score = 115 bits (289), Expect = 2e-29
Identities = 40/312 (12%), Positives = 67/312 (21%), Gaps = 65/312 (20%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRF 122
P P + + +C + G SW KDGK ++D
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRKDEGS 63
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
L D G Y E G A ++ +E G
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIE------GRP 117
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE---VQVDSKENLVIARLKIPHVYPE 238
+C + P I+W + ++D+ + NL +
Sbjct: 118 FQLDCVLPNAYP-KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKED--VS 174
Query: 239 DEGEFTCRVANELGEVVTSACLI------------------------VDVVKGKDLT--- 271
D ++ C N + + G
Sbjct: 175 DIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYC 234
Query: 272 ----------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
+ R+ L + +D G Y V N G
Sbjct: 235 MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG 294
Query: 310 SD-SCYASVAVE 320
+ V
Sbjct: 295 KPQKHSLKLTVV 306
Score = 34.5 bits (79), Expect = 0.037
Identities = 11/56 (19%), Positives = 12/56 (21%), Gaps = 2/56 (3%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSD-SCYASVAVEG 321
GK + S L D G YQ G S S
Sbjct: 45 GKSYNWQEHNAALRKDEGS-LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTY 99
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 138 bits (349), Expect = 5e-38
Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 19/198 (9%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPAT-------PNARVTIREKEDLRFLE 124
N+ V C G+P P +W + T + R+ ++ + L
Sbjct: 7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 66
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
I +V L D+G Y + + G + + L+I PK ++ +G+ +
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA------PKFISNQTIYYSWEGNPINI 120
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C V+ PP I W R+ ++ + + ++ + L+I D G +
Sbjct: 121 SCDVKSNPP--ASIHWRRDKLVLPAKNTTNLKTYSTGRKMI----LEIAPTSDNDFGRYN 174
Query: 245 CRVANELGEVVTSACLIV 262
C N +G L +
Sbjct: 175 CTATNHIGTRFQEYILAL 192
Score = 92.2 bits (229), Expect = 3e-21
Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 42/198 (21%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK-PEVQVDSK 222
+P ++ L+N + VT C + P +I+W R K + +++ K
Sbjct: 1 QPHII-QLKNETTYENGQVTLVCDAEGEPI--PEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKD 269
+ L I V D G + C A+ +G S L + +G
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNP 117
Query: 270 LT-------------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHV 304
+ + L + G +L I + +D G+Y
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177
Query: 305 SNQHGSDSCYASVAVEGR 322
+N G+ +A+
Sbjct: 178 TNHIGTRFQEYILALADV 195
Score = 88.7 bits (220), Expect = 6e-20
Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 31/198 (15%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN--ARVTIREKEDLRFL 123
P+F + G+ + C V P W +D + L
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
EI+ + D G Y N+ G+ L + D + K++ +
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIE-------LSQTTAK 213
Query: 184 FECQVQVVPPNDHDISWFRNNRLI--------KLDSDMKPEVQVDSKENLVIARLKIPHV 235
V P+ H I ++ S++ V+ + + + ++
Sbjct: 214 ----VSFNKPDSH------GGVPIHHYQVDVKEVASEIWKIVRSHGVQT----MVVLNNL 259
Query: 236 YPEDEGEFTCRVANELGE 253
P E N G+
Sbjct: 260 EPNTTYEIRVAAVNGKGQ 277
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 133 bits (336), Expect = 5e-38
Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 17/205 (8%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFL 123
P P N+ +G F C+ G P P W K+GK T + + + + L
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 124 EISEVTL-EDAGLYTIKVENNYG-SVEATARLEIMDPRAIISR-PKVLNGLENLRCCDGD 180
I V D Y EN G +V A A L I + + P + G G
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
+V C+ P +I W +N + + + + L+I + ED+
Sbjct: 127 TVLMTCKAIGNPTP--NIYWIKNQTKVDMSNPR---YSLKD------GFLQIENSREEDQ 175
Query: 241 GEFTCRVANELGEVVTSAC-LIVDV 264
G++ C N +G + A L V V
Sbjct: 176 GKYECVAENSMGTEHSKATNLYVKV 200
Score = 84.5 bits (209), Expect = 1e-19
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 52 SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNAR 111
+L + P P ++ ++G TV C G P P W K+ +
Sbjct: 97 TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNP 156
Query: 112 VTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA-RLEIMDPRAIISRPK 166
+ L+ I ED G Y EN+ G+ + A L + R
Sbjct: 157 RYSLKDGFLQ---IENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHHH 209
Score = 70.6 bits (173), Expect = 2e-14
Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 53/208 (25%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
P+++ +N G +F C + PP I W +N + + ++
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPP--PSIVWRKNGKKVSGTQS--RYTVLEQP 60
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVD------------------ 263
+ I R++ P D+ + C N +G+ V+ A L +
Sbjct: 61 GGISILRIE-PVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT 119
Query: 264 --VVKGKD-----------------------LTSDGRLNIITVGGTSVLTIEDITGDDSG 298
+ G + + G L IE+ +D G
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQG 176
Query: 299 KYQVHVSNQHGSDSCYAS-VAVEGRKII 325
KY+ N G++ A+ + V+ R++
Sbjct: 177 KYECVAENSMGTEHSKATNLYVKVRRVG 204
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 132 bits (334), Expect = 7e-38
Identities = 49/204 (24%), Positives = 75/204 (36%), Gaps = 19/204 (9%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
S F V + G+ C V+ PAP SW + T + + L
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNL 59
Query: 124 EISEVTLEDAGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
+I + D G+Y + + + P AI K N G+
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK----SFNATAERGEE 115
Query: 182 VTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
+TF C+ P P ISWFRN +LI+ + ++ + E L + ++ D
Sbjct: 116 MTFSCRASGSPEPA---ISWFRNGKLIEENEKYI--LKGSNTE------LTVRNIINSDG 164
Query: 241 GEFTCRVANELGEVVTSACLIVDV 264
G + CR N+ GE A L V V
Sbjct: 165 GPYVCRATNKAGEDEKQAFLQVFV 188
Score = 82.1 bits (203), Expect = 5e-19
Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 53/198 (26%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
S + G+ C+V P P +SW +N + SD + + ++
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAP---AVSWLYHNEEVTTISDNRFAMLANN 57
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK--------------- 266
L+I ++ DEG + C E + +IV V
Sbjct: 58 N-------LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA 110
Query: 267 -------------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQ 301
GK + + + I G + LT+ +I D G Y
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK--YILKGSNTELTVRNIINSDGGPYV 168
Query: 302 VHVSNQHGSDSCYASVAV 319
+N+ G D A + V
Sbjct: 169 CRATNKAGEDEKQAFLQV 186
Score = 34.0 bits (78), Expect = 0.036
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+++T+ N + + L I +I D G Y+ + + + + V
Sbjct: 40 NEEVTTISD-NRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 92
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 132 bits (334), Expect = 7e-38
Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 24/208 (11%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-ATPNARVTIREKED 119
+L +P + + F C+V P P SW+++ + R +IRE
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62
Query: 120 LRFLEISEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
L L I V D G+Y N G +VE+ L++ PK+ N++ +
Sbjct: 63 L--LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK------PKITRPPINVKIIE 114
Query: 179 GDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
G C P P+ +SW + + ++ +S + V +L I V
Sbjct: 115 GLKAVLPCTTMGNPKPS---VSWIKGDSALRENSR----IAVLESGSLRIHN-----VQK 162
Query: 238 EDEGEFTCRVANELGEVVTS-ACLIVDV 264
ED G++ C N LG + L V+V
Sbjct: 163 EDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
Score = 82.9 bits (205), Expect = 4e-19
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
+ ++ P+ P N G C+ G P P SW K N+R+ +
Sbjct: 90 ESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAV 149
Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT-ARLEIM 156
E LR I V EDAG Y +N+ G+ + +LE+
Sbjct: 150 LESGSLR---IHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 79.0 bits (195), Expect = 9e-18
Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 52/197 (26%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
P + LE + + TF C V+ P P ISW RN LIKL D + ++ +
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPE---ISWTRNKILIKL-FDTRYSIRENG 61
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS-ACLIVDV---------------- 264
L I V D+G + C N +G V S L V +
Sbjct: 62 ------QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEG 115
Query: 265 --------VKG---------KD---LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHV 304
G K L + R+ ++ G L I ++ +D+G+Y+
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDAGQYRCVA 172
Query: 305 SNQHGSDSC-YASVAVE 320
N G+ + VE
Sbjct: 173 KNSLGTAYSKLVKLEVE 189
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 137 bits (347), Expect = 6e-37
Identities = 44/305 (14%), Positives = 91/305 (29%), Gaps = 53/305 (17%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRF-- 122
P + + G+ C++ + +W ++ + D +
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYER 271
Query: 123 ---LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDG 179
L IS + D+G++ N +GS T LE++D I P + + DG
Sbjct: 272 QATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMI---NTTVFVNDG 328
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
++V + + P +H W NR + P+ + ++ L + + +
Sbjct: 329 ENVDLIVEYEAFPKPEH-QQWIYMNRTFTDKWEDYPK-SENESNIRYVSELHLTRLKGTE 386
Query: 240 EGEFTCRVANELGEVVTSACLIVDV------------------VKG-------------- 267
G +T V+N + + V+ G
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446
Query: 268 -----KDLTSDGRLNIITVGG-----TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
+ + + G +I+ +G + N G S Y +
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
Query: 318 AVEGR 322
A +G
Sbjct: 507 AFKGN 511
Score = 120 bits (303), Expect = 7e-31
Identities = 48/301 (15%), Positives = 80/301 (26%), Gaps = 51/301 (16%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFLE 124
+ + V + + +C +T S GKP + R K +
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI-- 172
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
S V+ G + + + A + P V + +G+ T
Sbjct: 173 KSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV 231
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C ++ V + +W R N KL + A L I D G F
Sbjct: 232 TCTIKDVSSS-VYSTWKRENSQTKL-QEKYNSWHHGDFNYERQATLTISSARVNDSGVFM 289
Query: 245 CRVANELGEVVTSACLIV----------------DVVKGKDLT----------------- 271
C N G + L V V G+++
Sbjct: 290 CYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI 349
Query: 272 ------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
N + S L + + G + G Y VSN + + +V V
Sbjct: 350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Query: 320 E 320
Sbjct: 410 N 410
Score = 97.8 bits (243), Expect = 7e-23
Identities = 46/310 (14%), Positives = 85/310 (27%), Gaps = 79/310 (25%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
S P + + I +GD +R C+ G W+ + T +
Sbjct: 35 SPPSIHPGKSDLIVRVGDEIRLLCTDPGFV----KWTFEILDETNENKQNE--------W 82
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
+ + G YT ++ + + + + DP + + L G E +
Sbjct: 83 ITEKAEATNTGKYTCTNKH---GLSNSIYVFVRDPAKLFLVDRSLYGKE------DNDTL 133
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
C + + + L D++ D K ++I +K
Sbjct: 134 VRCPLTDPEVT---NYSLKGCQGKPLPKDLR--FIPDPKAGIMIKSVKRA----YHRLCL 184
Query: 244 TCRVANELGEVVTSACLIVDVVK------------------------------------- 266
C V E G+ V S I+ V
Sbjct: 185 HCSVDQE-GKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243
Query: 267 ------GKDLTSDGRLNIITVGGT-----SVLTIEDITGDDSGKYQVHVSNQHGSDSCYA 315
+ N G + LTI +DSG + + +N GS +
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303
Query: 316 SVAVEGRKII 325
++ V + I
Sbjct: 304 TLEVVDKGFI 313
Score = 57.4 bits (138), Expect = 2e-09
Identities = 16/112 (14%), Positives = 19/112 (16%), Gaps = 18/112 (16%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-------DGKPATPNARVTIREKE 118
P QC G P P W P T+
Sbjct: 413 PEILTYDR------LVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466
Query: 119 DLR-----FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
I + G K N+ G A P
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518
Score = 56.2 bits (135), Expect = 5e-09
Identities = 21/226 (9%), Positives = 45/226 (19%), Gaps = 63/226 (27%)
Query: 131 EDAGLYT----IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFEC 186
A + + + GS + + P +I L GD + C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRV------GDEIRLLC 58
Query: 187 QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
+ W ++ + G++TC
Sbjct: 59 TDP------GFVKWTFEILDETNENKQN--------------EWITEKAEATNTGKYTCT 98
Query: 247 VANELGEVV----------TSACLIVDVVKGKDLT-----------------SDGRL--- 276
+ L + + + D G+
Sbjct: 99 NKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPK 158
Query: 277 -NIITVGGTSVLTIEDIT-GDDSGKYQVHVSNQHGS-DSCYASVAV 319
+ + I+ + V + S S + V
Sbjct: 159 DLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV 204
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 132 bits (333), Expect = 1e-36
Identities = 56/304 (18%), Positives = 92/304 (30%), Gaps = 62/304 (20%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPA--TPNARVTI-REKEDLR 121
+ VP +G++ F C V G SW R+++ +D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 122 FLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
L I ++DAG+Y V G+ EAT ++I + P E G+
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE------GE 116
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
C V P I W R + L D++ V S L I +K DE
Sbjct: 117 DAVIVCDVVSSLP--PTIIWKHKGRDVILKKDVR--FIVLSNNYLQIRGIK-----KTDE 167
Query: 241 GEFTCRVANELGEVVTSACLIVDVV----------------------------------- 265
G + C + + V V
Sbjct: 168 GTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT 227
Query: 266 -----KGKDLTSDGRLNI--ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVA 318
G+ + ++ + I +S LTI ++ +D +Y N+ G +
Sbjct: 228 MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
Query: 319 VEGR 322
V +
Sbjct: 288 VFAK 291
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 137 bits (346), Expect = 2e-36
Identities = 60/305 (19%), Positives = 95/305 (31%), Gaps = 57/305 (18%)
Query: 42 PLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK 101
LS P LN T SP + G + C P SW
Sbjct: 364 ELSVDHSDPVILNVLYGPDDPTISPSYTYY------RPGVNLSLSCHAASNPPAQYSWLI 417
Query: 102 DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
DG L IS +T +++GLYT + N+ T I +
Sbjct: 418 DGNIQQHTQE-----------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL 466
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
N + + D D+V F C+ + W+ N + + + ++ S
Sbjct: 467 PKPSISSNNSKPVE--DKDAVAFTCEPEAQNTT---YLWWVNGQSLPVSPRLQL-----S 516
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV--------------DVVK 266
N L + +V D + C + N + + L V +
Sbjct: 517 NGN---RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLS 573
Query: 267 GKDLT----SDG--------RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY 314
G +L S R+N I T VL I IT +++G Y VSN +
Sbjct: 574 GANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNS 633
Query: 315 ASVAV 319
++
Sbjct: 634 IVKSI 638
Score = 121 bits (304), Expect = 8e-31
Identities = 45/286 (15%), Positives = 84/286 (29%), Gaps = 59/286 (20%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P N G+ + C P SW +G L I
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFI 252
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIM----DPRAIISRPKVLNGLENLRCCDGDS 181
+T+ ++G YT + N+ + T I P+ I+ + D+
Sbjct: 253 PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVED------EDA 306
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
V C+ ++ W+ NN+ + + ++ + L + V D G
Sbjct: 307 VALTCEPEIQNTT---YLWWVNNQSLPVSPRLQLSNDNRT--------LTLLSVTRNDVG 355
Query: 242 EFTCRVANELGEVVTSACLIV---------------DVVKGKDLT----SDG-------- 274
+ C + NEL + ++ G +L+ +
Sbjct: 356 PYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSW 415
Query: 275 RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
++ T L I +IT +SG Y +N S +
Sbjct: 416 LIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Score = 118 bits (296), Expect = 1e-29
Identities = 46/298 (15%), Positives = 84/298 (28%), Gaps = 69/298 (23%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
+ + ++K + D V F C Q A W + + + R+ +
Sbjct: 101 TGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDAT-YLWWVNNQSLPVSPRLQL 159
Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLEN 173
R L + VT D Y + +N + + L ++ + N
Sbjct: 160 SNGN--RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTIS-----PLN 212
Query: 174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233
G+++ C PP SWF N + L IP
Sbjct: 213 TSYRSGENLNLSCHAASNPP--AQYSWFVNGTFQQSTQ-----------------ELFIP 253
Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVV---------------------------- 265
++ + G +TC+ N + + + V
Sbjct: 254 NITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP 313
Query: 266 -----------KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
+ L RL + T LT+ +T +D G Y+ + N+ D
Sbjct: 314 EIQNTTYLWWVNNQSLPVSPRLQLSNDNRT--LTLLSVTRNDVGPYECGIQNELSVDH 369
Score = 109 bits (273), Expect = 1e-26
Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 28/200 (14%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
+ ++K + D V F C Q W +G+ + R+ + R L +
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQL--SNGNRTLTL 524
Query: 126 SEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
VT DA Y ++N+ + + L+++ + G ++
Sbjct: 525 FNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS-----PPDSSYLSGANLNL 579
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C P SW N + L I + P + G +
Sbjct: 580 SCHSASNPS--PQYSWRINGIPQQHTQ-----------------VLFIAKITPNNNGTYA 620
Query: 245 CRVANELGEVVTSACLIVDV 264
C V+N S + V
Sbjct: 621 CFVSNLATGRNNSIVKSITV 640
Score = 100 bits (250), Expect = 1e-23
Identities = 48/287 (16%), Positives = 78/287 (27%), Gaps = 63/287 (21%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKP---------ATPNARVTIREKEDLRF-------L 123
G V Q SW K + + T R L
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73
Query: 124 EISEVTLEDAGLYTIKVENNYG---SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
I + D G YT+ V + R+ P+ IS + D
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVED------KD 127
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
+V F C+ + W+ NN+ + + ++ S N L + +V D
Sbjct: 128 AVAFTCEPETQDA---TYLWWVNNQSLPVSPRLQ-----LSNGNRT---LTLFNVTRNDT 176
Query: 241 GEFTCRVANELGEVV-TSACLIV--------------DVVKGKDLT----SDG------- 274
+ C N + S L V G++L +
Sbjct: 177 ASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYS 236
Query: 275 -RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+N T L I +IT ++SG Y N + +
Sbjct: 237 WFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 128 bits (323), Expect = 6e-36
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 36/209 (17%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
+ P +K G V+ C TG P W K K I L
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE--------IPNGNTSE-L 67
Query: 124 EISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAII---------SRPKVLNGLEN 173
+ V ++DAG Y +V NN+ ++L++ D S+ ++ +
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127
Query: 174 LRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233
+ G ++ +C P WF+N + ++ +P
Sbjct: 128 QKLMPGSTLVLQCVAVGSPI--PHYQWFKNELPLTHETK---------------KLYMVP 170
Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIV 262
+V E +G + C V N+ + I+
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
Score = 83.8 bits (207), Expect = 3e-19
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
S + P ++ G T+ QC G P P W K+ P T + +
Sbjct: 116 ESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KL 166
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
+ V LE G Y V N+ S ++ I+D + P
Sbjct: 167 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHP 209
Score = 75.7 bits (186), Expect = 2e-16
Identities = 33/207 (15%), Positives = 57/207 (27%), Gaps = 61/207 (29%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
K+ E+ G V C+ P WF+ N+ I +
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPF--VQYQWFKMNKEIPNGNT---------- 64
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS-ACLIV-----DVVKGKDLTSDGRL 276
+ L V+ +D G + CRV N + + L V + D S+ +L
Sbjct: 65 -----SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKL 119
Query: 277 NI-------------------------------------ITVGGTSVLTIEDITGDDSGK 299
I +T + + + + G
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGT 179
Query: 300 YQVHVSNQHGS-DSCYASVAVEGRKII 325
Y HV N S DS + ++ +
Sbjct: 180 YWCHVYNDRDSQDSKKVEIIIDELNNL 206
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 125 bits (316), Expect = 2e-35
Identities = 38/204 (18%), Positives = 59/204 (28%), Gaps = 26/204 (12%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR-- 121
+ + P G V+ CSV G P W KDG ++ I E
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 122 FLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
FL + V DAG Y +VE+ + + L + P ++L
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP------KDLAVPPNA 114
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
C+ P I W+R I + +
Sbjct: 115 PFQLSCEAVGPPEPVT-IVWWRGTTKIGGPAPS---------------PSVLNVTGVTQS 158
Query: 241 GEFTCRVANELGEVVTSACLIVDV 264
F+C N G + +S V +
Sbjct: 159 TMFSCEAHNLKG-LASSRTATVHL 181
Score = 71.4 bits (175), Expect = 4e-15
Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 36/188 (19%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
+ K++ L G V C V+ + D I W ++ ++ ++ +
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPD--IQWVKDGAVV----QNLDQLYIPVS 54
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDV-----VKGKDLT----S 272
E I L + V D G + C+V + ++ L V+ V+ KDL +
Sbjct: 55 EQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNA 114
Query: 273 DGRL-------------------NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
+L I S + S + N G S
Sbjct: 115 PFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASS 174
Query: 314 Y-ASVAVE 320
A+V ++
Sbjct: 175 RTATVHLQ 182
Score = 37.9 bits (88), Expect = 0.002
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 267 GKDLTSDGRLNIITVG--GTSVLTIEDITGDDSGKYQVHVSNQHGSD-SCYASVAVEG 321
G + + +L I L+++ + D+G+Y V + ++ S + VEG
Sbjct: 40 GAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 124 bits (314), Expect = 6e-35
Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 18/202 (8%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTS--WSKDGKPATPNARVTIREKEDLRFL 123
PR I D V QC++T W+K+G T +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-----ASNMEY 58
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
I++ ED+G Y V + + +A A +E+ P + + +G
Sbjct: 59 RINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAA------PDITGHKRSENKNEGQDAM 111
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV-YPEDEGE 242
C+ P + W + + + + L I ++ ED GE
Sbjct: 112 MYCKSVGYPHP--EWMWRKKENGV-FEEISNSSGRFFIINKENYTELNIVNLQITEDPGE 168
Query: 243 FTCRVANELGEVVTSACLIVDV 264
+ C N +G S L V V
Sbjct: 169 YECNATNSIGSASVSTVLRVRV 190
Score = 81.0 bits (200), Expect = 2e-18
Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 54/199 (27%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
+ P+++ E + VT +C + W +N + ++
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT-----------ATR 50
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV------------------ 264
+N +I ED GE+ C V + + +A + V
Sbjct: 51 KNASNMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQD 109
Query: 265 ------VKGK-----------------DLTSDGRLNIITVGGTSVLTIEDITG-DDSGKY 300
G S GR II + L I ++ +D G+Y
Sbjct: 110 AMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEY 169
Query: 301 QVHVSNQHGSDSCYASVAV 319
+ + +N GS S + V
Sbjct: 170 ECNATNSIGSASVSTVLRV 188
Score = 37.5 bits (87), Expect = 0.002
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
G +LT+ + I +DSG+Y V + + A++ V+
Sbjct: 43 GVELTATRK-----NASNMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKA 91
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 124 bits (313), Expect = 8e-35
Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 20/204 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQP-APWTSWSK-DGKPATPN-ARVTIREKEDLR- 121
+ VP +G++ F C V G SW +G+ +PN R+++ +D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 122 FLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
L I ++DAG+Y V G+ EAT ++I + N +G+
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI------FQKLMFKNAPTPQEFKEGE 116
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
C V P I W R + L D++ V ++ L+I + DE
Sbjct: 117 DAVIVCDVVSSLP--PTIIWKHKGRDVILKKDVRFIVLSNN-------YLQIRGIKKTDE 167
Query: 241 GEFTCRVANELGEVVTSACLIVDV 264
G + C + + V V
Sbjct: 168 GTYRCEGRILARGEINFKDIQVIV 191
Score = 76.0 bits (187), Expect = 1e-16
Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 46/195 (23%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
+V G+S F CQV + DISWF N + + V + ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKD-KDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV-------------DVVKGKD- 269
+ L I + +D G + C V E G + + + + +G+D
Sbjct: 62 ---STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDA 118
Query: 270 ------------------------LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
L D R V + L I I D G Y+
Sbjct: 119 VIVCDVVSSLPPTIIWKHKGRDVILKKDVR---FIVLSNNYLQIRGIKKTDEGTYRCEGR 175
Query: 306 NQHGSDSCYASVAVE 320
+ + + V
Sbjct: 176 ILARGEINFKDIQVI 190
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 131 bits (331), Expect = 3e-34
Identities = 43/331 (12%), Positives = 85/331 (25%), Gaps = 99/331 (29%)
Query: 80 GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNA---------------------------- 110
G T C+V P P W + N
Sbjct: 438 GTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKI 497
Query: 111 -----RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
+ + E ++ + + LY + N G E + I +P
Sbjct: 498 EVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQP 557
Query: 166 KVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI--------------KLDS 211
+ + + +SV+ C +++W++ LD+
Sbjct: 558 DM-------QPTEQESVSLWCTADRSTFE--NLTWYKLGPQPLPIHVGELPTPVCKNLDT 608
Query: 212 DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK----- 266
K + S I +++ + +D+G++ C + + + V++
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668
Query: 267 -----------------------------------GKDLTSDGRLNIITVGGTSVLTIED 291
+ L D I+ G LTI
Sbjct: 669 ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG--IVLKDGNRNLTIRR 726
Query: 292 ITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+ +D G Y + G A +EG
Sbjct: 727 VRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
Score = 130 bits (327), Expect = 1e-33
Identities = 42/279 (15%), Positives = 93/279 (33%), Gaps = 43/279 (15%)
Query: 80 GDTVRFQCSVTGQPAPWT--SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT 137
TV C + + + + + R++ K + I + AG+
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK---KGFTIPSYMISYAGMVF 199
Query: 138 IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
+ + N S ++ + ++ I VL+ + G+ + C + D
Sbjct: 200 CEAKINDESYQSIMYIVVVVGYRIY--DVVLSPSHGIELSVGEKLVLNCTARTELNVGID 257
Query: 198 ISWFRNNRLIKLDSDMKPEV--QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV 255
+W + + + ++ Q S+ ++ L I V D+G +TC ++ L
Sbjct: 258 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 317
Query: 256 TSACLIV----------------DVVKGKDLT----------------SDGRL--NIITV 281
S + V + G+ + +G + T+
Sbjct: 318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI 377
Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
VLTI +++ D+G Y V ++N + V++
Sbjct: 378 KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416
Score = 125 bits (315), Expect = 4e-32
Identities = 47/222 (21%), Positives = 75/222 (33%), Gaps = 33/222 (14%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP-------------- 108
T P P + ++V C+ +W K G P
Sbjct: 548 TRGPEITLQPDMQP-TEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL 606
Query: 109 ------NARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAII 162
NA + D+ +E+ +L+D G Y ++ ++ +
Sbjct: 607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV- 665
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
P + LEN G+S+ C PP I WF++N + DS + V D
Sbjct: 666 -APTITGNLENQTTSIGESIEVSCTASGNPP--PQIMWFKDNETLVEDSGI---VLKDGN 719
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
L I V EDEG +TC+ + LG A I++
Sbjct: 720 -----RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756
Score = 124 bits (311), Expect = 1e-31
Identities = 46/315 (14%), Positives = 78/315 (24%), Gaps = 67/315 (21%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
PR T++ C GQ W + RV + E D F
Sbjct: 30 DLPRLSIQKDILTIKANTTLQITC--RGQRDL--DWLWPNNQSGSEQRVEVTECSDGLFC 85
Query: 123 --LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
L I +V D G Y + ++ I S +G+ +
Sbjct: 86 KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQ-HGVVYITENKNK 144
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
+V C + N + + R + + + DSK+ I P
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGN----RISWDSKKGFTI-----PSYMISYA 195
Query: 241 GEFTCRVANELGEVVTSACLIV-----------------DVVKGKDLT------------ 271
G C + ++V ++ G+ L
Sbjct: 196 GMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG 255
Query: 272 ---------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS 310
+ S LTI+ +T D G Y S+ +
Sbjct: 256 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 315
Query: 311 DSCYASVAVEGRKII 325
V V + +
Sbjct: 316 KKNSTFVRVHEKPFV 330
Score = 116 bits (290), Expect = 6e-29
Identities = 38/325 (11%), Positives = 83/325 (25%), Gaps = 91/325 (28%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
+G+ VR G P P W K+G P N + L I EV+ D G YT+
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV-----LTIMEVSERDTGNYTV 398
Query: 139 KVENNYGSVEATARLEIMD-PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
+ N + + + ++ I +++ +++ + G + T C V +PP H
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQ--YGTTQTLTCTVYAIPPPHH- 455
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSK---------------------------ENLVIARL 230
I W+ + + + E
Sbjct: 456 IHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVS 515
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV------------DVVKGKDLT------- 271
+ + C N++G V + + ++
Sbjct: 516 TLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADR 575
Query: 272 ------------------------------------SDGRLNIITVGGTSVLTIEDITGD 295
+ + + ++ +++ +
Sbjct: 576 STFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQ 635
Query: 296 DSGKYQVHVSNQHGSDSCYASVAVE 320
D G Y ++ +
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVVRQLT 660
Score = 113 bits (284), Expect = 5e-28
Identities = 31/195 (15%), Positives = 68/195 (34%), Gaps = 26/195 (13%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI----------REKEDLRFLEISEVT 129
G+ + C+ + ++ + + + + K+ L L I VT
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298
Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
D GLYT + + + + + + + + + + +E G+ V +
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT---VGERVRIPAKYL 355
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
PP +I W++N ++ + +K L I V D G +T + N
Sbjct: 356 GYPP--PEIKWYKNGIPLESNHTIKAG-----------HVLTIMEVSERDTGNYTVILTN 402
Query: 250 ELGEVVTSACLIVDV 264
+ + S + + V
Sbjct: 403 PISKEKQSHVVSLVV 417
Score = 89.4 bits (221), Expect = 7e-20
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P N+ +G+++ C+ +G P P W KD + ++ + +++ R L I
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTI 724
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
V ED GLYT + + G + A I + + +
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLER 765
Score = 83.3 bits (205), Expect = 8e-18
Identities = 31/236 (13%), Positives = 52/236 (22%), Gaps = 58/236 (24%)
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
+ L L+ + L+ P++ + L ++
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLD---------LPRLSIQKDILTIKANTTLQI 51
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C+ Q D+ W N + ++ D L L IP V D G +
Sbjct: 52 TCRGQ------RDLDWLWPNNQSGSEQRVEVTECSD---GLFCKTLTIPKVIGNDTGAYK 102
Query: 245 CRVANELGEVVTSACLIV------------------DVVKGKDLT-----SDGRLNI--- 278
C V + K K + S LN+
Sbjct: 103 CFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162
Query: 279 --------------ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
I+ TI +G S + V
Sbjct: 163 ARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 122 bits (308), Expect = 6e-34
Identities = 26/213 (12%), Positives = 68/213 (31%), Gaps = 24/213 (11%)
Query: 66 PRFYAVPHNKICDLGDTVRFQ-CSVTGQPAPWTSWSKDGKPATPNARVTIREKED--LRF 122
F VRF + ++ + K + + + +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLE---------- 172
+ + ++ ED G YT ++++ + +T L + + +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 173 --NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
+ +V +C+V + + I W+++ R I +D + + L
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKK-ETHIVWYKDEREISVDEKHDFKDGI--------CTL 173
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
I +D G + + ++ G+ + L+ +
Sbjct: 174 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 42.6 bits (100), Expect = 6e-05
Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 267 GKDLTSDGRLNIITVGGTSV--LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
K++ + + T + + +E + +D G Y + + ++ + + K
Sbjct: 41 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK 99
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 122 bits (307), Expect = 8e-34
Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 14/212 (6%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP----NARVTIREKE 118
S ++ + V+ C+ +G +P W D T N ++T ++
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 119 DLRF----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENL 174
+ F + VT ED G YT V G+ +++++ ++ P
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI----VLVPPSKPTVNIPS 117
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK-ENLVIARLKIP 233
G+ C Q P +WF++ ++ + S N L
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSE-YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFD 176
Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
+ D GE++C N G +TS + ++ V
Sbjct: 177 PLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208
Score = 76.5 bits (188), Expect = 1e-16
Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 52/193 (26%)
Query: 179 GDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI--ARLKIPHV 235
+ V C P + W + ++ ++ + + V
Sbjct: 19 NNPVKLSCAYSGFSSPR---VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV 75
Query: 236 YPEDEGEFTCRVANELGEVVTSACLIVDVV------------------------------ 265
ED G +TC V+ E G + + V+
Sbjct: 76 TREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGS 135
Query: 266 ---------KGKDLTSDGRLNI-------ITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
G + ++ + + T L + ++ D+G+Y N +G
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 195
Query: 310 SDSCYASVAVEGR 322
+ +V +E
Sbjct: 196 TPMTSNAVRMEAV 208
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 126 bits (318), Expect = 1e-33
Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 23/223 (10%)
Query: 44 SSRTFTPYSLNSAIRTRRLTSSPRF---YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWS 100
+ + P++L +P F +++ G + +C +G P P +W
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY 257
Query: 101 KDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA 160
K G P+ + + L I+ V+ ED+G Y N GS+ T + +
Sbjct: 258 KKGGDL-PSDKAKFENFN--KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA-- 312
Query: 161 IISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQV 219
P L+ +NL G+ C+ P P + W N ++
Sbjct: 313 ----PYWLDEPKNLILAPGEDGRLVCRANGNPKPT---VQWMVNGEPLQSAPPNPNREVA 365
Query: 220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ + C +NE G ++ +A + V
Sbjct: 366 GD-------TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 118 bits (296), Expect = 2e-30
Identities = 57/307 (18%), Positives = 100/307 (32%), Gaps = 64/307 (20%)
Query: 61 RLTSSPRFYAVPHNKIC-DLGDTVRFQCSVT-GQPAPWTSWSKDGKPATP-NARVTIREK 117
+++ SP + + + G + QC+ G P+P W + RV+
Sbjct: 111 QVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN 170
Query: 118 EDLRFLEISEVTLEDA-GLYTIKVENNYG---SVEATARLEIMDPRAIISRP----KVLN 169
DL S V L+D Y+ ++ + L+++ R + R
Sbjct: 171 GDLY---FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQG 227
Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR 229
+ G + EC VP DI+W++ + D +K
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPT--PDIAWYKKGGDLPSD---------KAKFENFNKA 276
Query: 230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT----- 271
L+I +V ED GE+ C +N++G + + + V + G+D
Sbjct: 277 LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA 336
Query: 272 -------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
+ N G T + D YQ + SN+HG
Sbjct: 337 NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT--IIFRDTQISSRAVYQCNTSNEHGYLL 394
Query: 313 CYASVAV 319
A V+V
Sbjct: 395 ANAFVSV 401
Score = 104 bits (261), Expect = 1e-25
Identities = 52/317 (16%), Positives = 93/317 (29%), Gaps = 71/317 (22%)
Query: 59 TRRLTSSPRFYAVP-HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK 117
LT P + I D D + +C G PAP W+++ + + +
Sbjct: 10 QNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMR 69
Query: 118 EDLRFLEISEVTL----EDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLE 172
L I + E G Y N +G+ RL++ L+
Sbjct: 70 RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKEN-----LD 124
Query: 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKI 232
+ +G +T +C P+ I W ++ V +L +
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPV-IFWMSSSMEPITQDKR---VSQGHNGDLYFS---- 176
Query: 233 PHVYPED-EGEFTCRVANELGEVV---TSACLIVD-----------------------VV 265
+V +D + +++C + L V V+
Sbjct: 177 -NVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVL 235
Query: 266 KGKDLT----------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVH 303
+G DL + L I +++ +DSG+Y
Sbjct: 236 RGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA--LRITNVSEEDSGEYFCL 293
Query: 304 VSNQHGSDSCYASVAVE 320
SN+ GS SV V+
Sbjct: 294 ASNKMGSIRHTISVRVK 310
Score = 86.5 bits (214), Expect = 4e-19
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P + P N I G+ R C G P P W +G+P RE +
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAG-DTIIF 371
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
+ + +Y N +G + A A + ++D
Sbjct: 372 RDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 66.0 bits (161), Expect = 3e-12
Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 47/205 (22%)
Query: 146 SVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNR 205
++ + + E+ P I + ++ D++ EC+ + P W RN+R
Sbjct: 4 PMDPSIQNELTQPPTITKQS-----AKDHIVDPRDNILIECEAKGNPA--PSFHWTRNSR 56
Query: 206 LIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV-- 262
+ D + ++ S LVI + E EGE+ C N+ G ++ L V
Sbjct: 57 FFNIAKDPRVSMRRRS-GTLVI-DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
Query: 263 ------------DVVKGKDLT-----------------SDGRLNI-----ITVGGTSVLT 288
V +G LT S I ++ G L
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174
Query: 289 IEDIT-GDDSGKYQVHVSNQHGSDS 312
++ D Y +
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFTHTI 199
Score = 32.9 bits (75), Expect = 0.13
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 269 DLTSDGRLNIITVGGTSVLT--IEDITGDDSGKYQVHVSNQHGSD-SCYASVAVEG 321
++ D R+++ GT V+ + G+YQ N+ G+ S + V
Sbjct: 59 NIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 126 bits (317), Expect = 2e-33
Identities = 46/219 (21%), Positives = 68/219 (31%), Gaps = 24/219 (10%)
Query: 44 SSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG 103
S L+ A R + P + G V +C G P P W K
Sbjct: 186 KSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD 245
Query: 104 KPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
T L I V ED G Y + EN G R+ I
Sbjct: 246 GSQTSKWLS------SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ----- 294
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
P L+ + + G + + C P + W R+ + + + ++V
Sbjct: 295 -PDWLDVITDTEADIGSDLRWSCVASGKPR--PAVRWLRDGQPLASQNR----IEVSG-- 345
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L+ + ED G + C N+ G V SA L V
Sbjct: 346 ----GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 123 bits (311), Expect = 1e-32
Identities = 59/308 (19%), Positives = 91/308 (29%), Gaps = 68/308 (22%)
Query: 61 RLTSSPRFYAVPHNKI-CDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATP---NARVTIR 115
R F A + + G V F CS PA W + P R +
Sbjct: 96 RFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ 155
Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEAT-----ARLEIMDPRAIISRPKVL-N 169
+L I++ D G Y+ ++ + + ++L + A P +
Sbjct: 156 TTGNLY---IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR 229
+ G VT EC P I W + D +
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPV--PQIKWRKL------DGSQTSKWLSSEP------L 258
Query: 230 LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-----------DVVK------------ 266
L I +V EDEG + C N G +I+ D
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVA 318
Query: 267 -------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
G+ L S R+ + GG L + +DSG YQ N+HG+
Sbjct: 319 SGKPRPAVRWLRDGQPLASQNRIEV--SGGE--LRFSKLVLEDSGMYQCVAENKHGTVYA 374
Query: 314 YASVAVEG 321
A + V+
Sbjct: 375 SAELTVQA 382
Score = 115 bits (289), Expect = 1e-29
Identities = 47/304 (15%), Positives = 86/304 (28%), Gaps = 59/304 (19%)
Query: 63 TSSPRFYAVPHNKICDLG---DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED 119
+ P F P + + G + V C P W +G R
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 120 LRFLEISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCD 178
+ + V +DAG Y N G+V + A L + + + + ++ +
Sbjct: 62 -DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEER-----DPVKITE 115
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G V F C P W N + +D + V + L I
Sbjct: 116 GWGVMFTCSPPPHYP-ALSYRWLLNEFPNFIPADGRRFVSQTT------GNLYIAKTEAS 168
Query: 239 DEGEFTCRVANELGEVVTSACLI-------------------------VDVVKGKDLT-- 271
D G ++C + + + S + G+ +T
Sbjct: 169 DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLE 228
Query: 272 ---------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYAS 316
DG + +L I+++ +D G Y+ N G D+
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 317 VAVE 320
+ +
Sbjct: 289 IIIH 292
Score = 55.3 bits (133), Expect = 7e-09
Identities = 32/187 (17%), Positives = 51/187 (27%), Gaps = 52/187 (27%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
+ VT C+ + PP W N +K+ D + + LVI V +
Sbjct: 22 EEKVTLTCRARANPP--ATYRWKMNGTELKMGPDSRYRLVAGD---LVI----SNPVKAK 72
Query: 239 DEGEFTCRVANELGEVVT-SACLIV--------------DVVKGKDLT------------ 271
D G + C N G VV+ A L + +G +
Sbjct: 73 DAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPAL 132
Query: 272 --------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
+DGR + G L I D G Y ++ +
Sbjct: 133 SYRWLLNEFPNFIPADGRRFVSQTTGN--LYIAKTEASDLGNYSCFATSHIDFITKSVFS 190
Query: 318 AVEGRKI 324
+
Sbjct: 191 KFSQLSL 197
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 124 bits (313), Expect = 6e-33
Identities = 43/221 (19%), Positives = 67/221 (30%), Gaps = 26/221 (11%)
Query: 44 SSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG 103
+R ++ V + T+ C G PAP W K
Sbjct: 191 ETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFI 250
Query: 104 KPATPNARVTIREKEDL--RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
+ T V + ++ L I + +ED+G Y V N+ G L + P
Sbjct: 251 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP--- 307
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
G F CQ P +SW ++ + I +
Sbjct: 308 ---LSAKIDPPTQTVDFGRPAVFTCQYTGNPI--KTVSWMKDGKAIGHSESV-------- 354
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L+I V ED+G + C V N+ SA L +
Sbjct: 355 --------LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 123 bits (311), Expect = 1e-32
Identities = 53/301 (17%), Positives = 92/301 (30%), Gaps = 54/301 (17%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSV---TGQPAPWTSWSKDGKP-----ATPNARV 112
R + + A + + G++ +C + SW D + A + +
Sbjct: 99 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 158
Query: 113 TIREKEDLRFLEISEVTLEDA-GLYTIKVENNYGS---VEATARLEIMDPRAIISRPKVL 168
+ + L I EV ED Y + ++ + AT ++ S P+
Sbjct: 159 LVLPSGE---LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215
Query: 169 NGL-ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI 227
+ + L +++ C Q P W++ V ++ + V
Sbjct: 216 ALVQKPLELMVAHTISLLCPAQGFPA--PSFRWYKFIEGTTRKQA----VVLNDRVKQVS 269
Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT--- 271
L I ED G++ C V N +G L V V G+
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 329
Query: 272 -------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVA 318
DG+ I L IE + +D G YQ V N S A +
Sbjct: 330 QYTGNPIKTVSWMKDGKA-IGHSESV--LRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
Query: 319 V 319
+
Sbjct: 387 L 387
Score = 96.2 bits (239), Expect = 1e-22
Identities = 53/315 (16%), Positives = 88/315 (27%), Gaps = 71/315 (22%)
Query: 65 SPRFYAVPHNKIC-DLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
P F P N+I +C +G P P W + A + +R+ L
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKL 61
Query: 124 EISEVTLED------AGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENLRC 176
ED A +Y N +GS+ + + + + + +
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR---- 117
Query: 177 CDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPE-VQVDSKENLVIARLKIPH 234
G+S +C + + +SW + V L I
Sbjct: 118 --GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR-----E 170
Query: 235 VYPED-EGEFTCRVANELG-EVVTSACLIV----------------------DVVKGKDL 270
V PED + CR + L E SA +++ +
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI 230
Query: 271 T-------------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVS 305
+ LN + L I+D +DSGKY V+
Sbjct: 231 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 290
Query: 306 NQHGSDSCYASVAVE 320
N G +S + V
Sbjct: 291 NSVGGESVETVLTVT 305
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 124 bits (312), Expect = 8e-33
Identities = 52/220 (23%), Positives = 75/220 (34%), Gaps = 24/220 (10%)
Query: 45 SRTFTPYSLNSAIRTRRLTSSPRF-YAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-D 102
P L P+ P + G TV+ +C G P P W + D
Sbjct: 184 KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRAD 243
Query: 103 GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAII 162
GKP AR LEI EDAG Y EN+ G A +L
Sbjct: 244 GKPIARKARRHKSNGI----LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ---- 295
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
P + + ++ +SV +EC+ P W +N + +Q++
Sbjct: 296 --PNWVQIINDIHVAMEESVFWECKANGRPK--PTYRWLKNGDPLLTR----DRIQIEQ- 346
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L I V D G + C N+ G + +SA L V
Sbjct: 347 -----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 123 bits (311), Expect = 1e-32
Identities = 58/303 (19%), Positives = 91/303 (30%), Gaps = 62/303 (20%)
Query: 61 RLTSSPRFYA-VPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATP-NARVTIREK 117
+ F G + C +W + P+ N R +E
Sbjct: 97 QFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET 156
Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA----RLEIMDPRAIISRPKV-LNGLE 172
+L I++V D G YT V N + + + D PK+ + E
Sbjct: 157 GNL---YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKI 232
+ G +V EC P I W R + + ++ + L+I
Sbjct: 214 TVPAEKGTTVKLECFALGNPV--PTILWRRAD---------GKPIARKARRHKSNGILEI 262
Query: 233 PHVYPEDEGEFTCRVANELGEVVTSACLIV-----------DVVK--------------- 266
P+ ED G + C N G+ V L D+
Sbjct: 263 PNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGR 322
Query: 267 ----------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYAS 316
G L + R+ I GT L I + D+G YQ N+HG A
Sbjct: 323 PKPTYRWLKNGDPLLTRDRIQI--EQGT--LNITIVNLSDAGMYQCVAENKHGVIFSSAE 378
Query: 317 VAV 319
++V
Sbjct: 379 LSV 381
Score = 109 bits (274), Expect = 2e-27
Identities = 53/308 (17%), Positives = 90/308 (29%), Gaps = 69/308 (22%)
Query: 64 SSPRFYAVPHNKICDL---GDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKE 118
S P F P + + L V+ C V G P P W +G + R ++ +
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 119 DLRFLEISEVT-LEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRC 176
L I+ +DAG Y N++G++ + A+L+ +R + +
Sbjct: 64 ----LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTR-----STVSV 114
Query: 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
G + C + +W N D+ NL IA+ V
Sbjct: 115 RRGQGMVLLCGPPPHSG-ELSYAWIFNEYPSYQDNRR---FVSQETGNLYIAK-----VE 165
Query: 237 PEDEGEFTCRVANELGEVVTSACLI------------------------VDVVKGKDLT- 271
D G +TC V N + V KG +
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225
Query: 272 ----------------SDGRL---NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
+DG+ +L I + +D+G Y+ N G +
Sbjct: 226 ECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNV 285
Query: 313 CYASVAVE 320
+
Sbjct: 286 AKGQLTFY 293
Score = 88.7 bits (220), Expect = 5e-20
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
+ P + + ++ + ++V ++C G+P P W K+G P R+ I +
Sbjct: 293 YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT---- 348
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
L I+ V L DAG+Y EN +G + ++A L ++
Sbjct: 349 LNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 29.8 bits (67), Expect = 1.3
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGD-DSGKYQVHVSNQHGSD-SCYASVAVEG 321
G D+ V G+ L I + D+G YQ +N G+ S A +
Sbjct: 46 GTDVDIGMDFRYSVVDGS--LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAY 100
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 119 bits (299), Expect = 9e-32
Identities = 39/300 (13%), Positives = 74/300 (24%), Gaps = 69/300 (23%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
+P + + G+TV +C G W P T+ + L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGSV----EWDGPISP-----YWTLDPESPGSTLT 54
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
T ++ G Y + + T L + DP + + + +G
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLA-----QEVTVVEGQEAVL 109
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C + D +S R L + +I + K D +
Sbjct: 110 PCLITDPALKDS-VSLMREGGRQVLRKTV---YFFSPWRGFIIRKAK-----VLDSNTYV 160
Query: 245 CRVANELGEVVTSACLIVDV------------------------------VKGKD----- 269
C+ G TS + + V +
Sbjct: 161 CKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNV 219
Query: 270 ----------LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
+ + L++ + D+G Y SN G+ + + V
Sbjct: 220 ILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Score = 80.0 bits (197), Expect = 2e-17
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 59 TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK---PATPNARVTIR 115
R P+ P + G+ + CS T + K G N+
Sbjct: 180 NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN 239
Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ +R L ++ V +DAG+Y+ N+ G+ AT ++++
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282
Score = 56.9 bits (137), Expect = 2e-09
Identities = 25/179 (13%), Positives = 43/179 (24%), Gaps = 54/179 (30%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G++VT C + + W P +D + + L + +
Sbjct: 19 GETVTLRCVS------NGSVEWDGPIS---------PYWTLDPESP--GSTLTTRNATFK 61
Query: 239 DEGEFTCRVANELGEVVTSACLIV--------------DVVKGKDLT------------- 271
+ G + C + T+ L V VV+G++
Sbjct: 62 NTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDS 121
Query: 272 -----SDGRL----NIITVGGTSVLTIEDITGDDSGKYQVHVSNQ-HGSDSCYASVAVE 320
GR + I DS Y S S + V
Sbjct: 122 VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180
Score = 38.4 bits (89), Expect = 0.002
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 250 ELGEVVTSACLIVDVVK-GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQH 308
E GE VT C+ V+ ++ L+ + G T LT + T ++G Y+
Sbjct: 17 EPGETVTLRCVSNGSVEWDGPISPYWTLDPESPGST--LTTRNATFKNTGTYRCTELEDP 74
Query: 309 GSDSCYASVAVEGRKII 325
+ S + V+
Sbjct: 75 MAGSTTIHLYVKDPAHS 91
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 115 bits (289), Expect = 4e-31
Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 15/210 (7%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATP----NARVTIREKEDLR 121
Y + ++++ C+ +G +P W T N+++T + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 122 F----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCC 177
F + S VT +D G YT V G + + ++ P
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT----VLVPPSKPTISVPSSVT 117
Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE--NLVIARLKIPHV 235
G+ C P SWF++ + K ++S + L V
Sbjct: 118 IGNRAVLTCSEHDGSPPSE-YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 176
Query: 236 YPEDEGEFTCRVANELGEVVTSACLIVDVV 265
D GE+ C+ N G + S +D V
Sbjct: 177 TAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
Score = 71.2 bits (174), Expect = 1e-14
Identities = 24/207 (11%), Positives = 55/207 (26%), Gaps = 53/207 (25%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
+ V +++ + +S+ C P + W ++
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPR---VEWKFVQGSTTALVCYNSQITAPYA 57
Query: 223 ENLVI--ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV---------------V 265
+ + + + V +D GE+TC V+ E G+ + + V
Sbjct: 58 DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVT 117
Query: 266 KGKDLT--------------------------------SDGRLNIITVGGTSVLTIEDIT 293
G + + + L + +T
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 294 GDDSGKYQVHVSNQHGSDSCYASVAVE 320
DSG+Y N +G+ + ++
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAHMD 204
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 112 bits (282), Expect = 6e-30
Identities = 48/214 (22%), Positives = 74/214 (34%), Gaps = 24/214 (11%)
Query: 60 RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-----ATPNARVTI 114
R+ PR P + I G+ C G+P P W K G+ P + +
Sbjct: 4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 115 REKEDLRFLEI--SEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKVLNGL 171
L FL I + D G+Y N G +V A LE+ I R
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV-----AILRDDFRQNP 118
Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK 231
++ G+ ECQ P ISW ++ + + + + + L
Sbjct: 119 SDVMVAVGEPAVMECQPPRGHPEPT-ISWKKDGSPLDDKDER---ITIRGGK------LM 168
Query: 232 IPHVYPEDEGEFTCRVANELGEVVTS-ACLIVDV 264
I + D G++ C N +GE + A L V
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202
Score = 71.0 bits (174), Expect = 1e-14
Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 46/201 (22%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDS-DMKPEVQVDS 221
P+++ +L G+ T C+ + P I W++ ++ D D + +
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT--IEWYKGGERVETDKDDPRSHRMLLP 65
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDVVK-------------- 266
+L R+ DEG + C N LGE V+ A L V +++
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV 125
Query: 267 ------------------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQV 302
G L I GG L I D+GKY
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDE-RITIRGGK--LMITYTRKSDAGKYVC 182
Query: 303 HVSNQHGSD-SCYASVAVEGR 322
+N G S A + V R
Sbjct: 183 VGTNMVGERESEVAELTVLER 203
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 111 bits (280), Expect = 7e-30
Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 20/204 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWT-SWSKDGKPATPNARVTIREKEDLRFL 123
P G + C P + W + P + L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR----PKVLNGLENLRCCDG 179
I+ V D G Y+ V + + ++ + P + ++ +++ G
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 180 DSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
+VT EC P P+ I W + + +++ V LKI ++ E
Sbjct: 129 QNVTLECFALGNPVPD---IRWRKVLEPMPSTAEISTSGAV----------LKIFNIQLE 175
Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
DEG + C N G+ A + V
Sbjct: 176 DEGIYECEAENIRGKDKHQARIYV 199
Score = 84.2 bits (208), Expect = 2e-19
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 4/111 (3%)
Query: 45 SRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK 104
S L + +G V +C G P P W K +
Sbjct: 93 SVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLE 152
Query: 105 PATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
P A ++ L+I + LED G+Y + EN G + AR+ +
Sbjct: 153 PMPSTAEISTSGAV----LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 75.3 bits (185), Expect = 3e-16
Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 56/189 (29%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G + C P+D W N + + D K + NL IA +V
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD-KRRFVSQTNGNLYIA-----NVEAS 76
Query: 239 DEGEFTCRVANELGEVVTSACLIVDVVK-------------------------------- 266
D+G ++C V++ + I +
Sbjct: 77 DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECF 136
Query: 267 --------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
+ + S I+ G +VL I +I +D G Y+ N G D
Sbjct: 137 ALGNPVPDIRWRKVLEPMPSTAE---ISTSG-AVLKIFNIQLEDEGIYECEAENIRGKDK 192
Query: 313 CYASVAVEG 321
A + V+
Sbjct: 193 HQARIYVQA 201
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 112 bits (281), Expect = 8e-30
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 21/211 (9%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED---- 119
SPR P + + + C V G+P P W KDG+P + N + + R +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 120 LRFLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
+ + +D G Y +N G V A L+I + R ++ R
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI-----AVLRDDFRVEPKDTRVAK 122
Query: 179 GDSVTFEC-QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR---LKIPH 234
G++ EC + +P + W ++ + D + + + I L I +
Sbjct: 123 GETALLECGPPKGIPEP--TLIWIKDGVPL----DDLKAMSFGASSRVRIVDGGNLLISN 176
Query: 235 VYPEDEGEFTCRVANELGEVVTS-ACLIVDV 264
V P DEG + C N +G +S A LIV V
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
Score = 73.4 bits (180), Expect = 1e-15
Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 62 LTSSPRFYAVPHNKICDLGDTVRFQCS-VTGQPAPWTSWSKDGKP--------ATPNARV 112
F P + G+T +C G P P W KDG P ++RV
Sbjct: 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164
Query: 113 TIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPK 166
I + +L IS V D G Y +N G+ E+ A+L + A
Sbjct: 165 RIVDGGNLL---ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
Score = 70.7 bits (173), Expect = 1e-14
Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 49/205 (23%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
P+++ +L + T C+V+ P I WF++ + + VQ
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPT--IEWFKDGEPVSTNEKKSHRVQFKD- 64
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDVVK--------------- 266
+ + +D GE+ C N +G+ V+ A L + V++
Sbjct: 65 -GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKG 123
Query: 267 -----------------------GKDLTSDGRLNI-----ITVGGTSVLTIEDITGDDSG 298
G L ++ + + L I ++ D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 299 KYQVHVSNQHGSD-SCYASVAVEGR 322
Y+ N G+ S YA + V+ +
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQVK 208
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 116 bits (291), Expect = 1e-29
Identities = 40/303 (13%), Positives = 73/303 (24%), Gaps = 65/303 (21%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
S D+ ++ Q V W ++ + + +
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MV 106
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
I ++T AG Y + +++ + + I + R +E +
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME-------NQDAL 159
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C + VP + W + + + P V KE V+ L +
Sbjct: 160 VCISESVPEP--IVEWVLCDSQGESCKEESPAVVK--KEEKVLHEL--------FGTDIR 207
Query: 245 CRVANELGEVVTSACLIVDVVK------------------------------------GK 268
C NELG T I K
Sbjct: 208 CCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENK 267
Query: 269 DLTSDGRLNIITVGGTSV------LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
L + T + + +D+G Y S A V + +
Sbjct: 268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEK 324
Query: 323 KII 325
I
Sbjct: 325 GFI 327
Score = 113 bits (283), Expect = 2e-28
Identities = 30/291 (10%), Positives = 75/291 (25%), Gaps = 47/291 (16%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRF 122
+ Y + + + C P P W + + +KE+
Sbjct: 139 NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV- 197
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
+ E+ D N G ++ + P L G+ +
Sbjct: 198 --LHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLP-------QLFLKVGEPL 245
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
C+ V ++W N+ ++ + + ++ + I + V D G
Sbjct: 246 WIRCKAVHVNHGF-GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY 304
Query: 243 FTCRVANELGEVV------------TSACLIVDVVKGKDLT-----------------SD 273
+TC + + T++ ++ + ++ S
Sbjct: 305 YTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR 364
Query: 274 GRL--NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+ ++ G+Y H N + ++ +
Sbjct: 365 KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 73.9 bits (181), Expect = 6e-15
Identities = 19/220 (8%), Positives = 52/220 (23%), Gaps = 50/220 (22%)
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
+ ++ ++ + Y + E+ L + V S+T
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDL---GCALRPQSSGTVYEAAAV-------EVDVSASIT 67
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
+ V W + + +N + + I + GE+
Sbjct: 68 LQVLVDAPGN--ISCLWVFKHSSLNCQPHFD-------LQNRGVVSMVILKMTETQAGEY 118
Query: 244 TCRVANELGEVVTSACLIV-----------DVVKGKDLTS------------------DG 274
+ +E + + K ++ + D
Sbjct: 119 LLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDS 178
Query: 275 RLNIITVGGTSVLTIED--ITGDDSGKYQVHVSNQHGSDS 312
+ +V+ E+ + + N+ G +
Sbjct: 179 QGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218
Score = 67.0 bits (163), Expect = 1e-12
Identities = 13/109 (11%), Positives = 26/109 (23%), Gaps = 8/109 (7%)
Query: 54 NSAIRTRRLT--SSPRFYAVPHNKI--CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN 109
++ +T A ++ D + F P +W+ K
Sbjct: 311 KHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370
Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ ++ + G Y EN+ L I
Sbjct: 371 ----QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 113 bits (283), Expect = 2e-29
Identities = 37/301 (12%), Positives = 63/301 (20%), Gaps = 69/301 (22%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
S P + G TV +C G W P+ T+ L
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNGSV----EWDGP-----PSPHWTLYSDGSSSIL 53
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
+ T ++ G Y + A L + DP + + + +
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVL-----AQEVVVFEDQDAL 108
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
C + +S R + I ++
Sbjct: 109 LPCLLTDPVLEAG-VSLVRVRGRPLMRH---TNYSFSPWHGFT-----IHRAKFIQSQDY 159
Query: 244 TCRVANELGEVVTSACLIVDV------------------------------VKGKD---- 269
C A G V S + + V D
Sbjct: 160 QC-SALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFD 218
Query: 270 -----------LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVA 318
+ + L ++ + +G Y SN G S
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
Query: 319 V 319
V
Sbjct: 279 V 279
Score = 76.2 bits (187), Expect = 5e-16
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 3/108 (2%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK---PATPNARVTIREK 117
+ P VP + G+ + CS + + + + +
Sbjct: 182 VIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRY 241
Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
+ + L + +V + AG Y+ N G + +++
Sbjct: 242 QKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHH 289
Score = 57.3 bits (138), Expect = 1e-09
Identities = 25/197 (12%), Positives = 44/197 (22%), Gaps = 54/197 (27%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
S P + + L G +VT C + + W P
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVG------NGSVEWDGP-----------PSPHWTLY 45
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV--------------DVVKGK 268
+ + L + ++ G + C + + L V V + +
Sbjct: 46 SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQ 105
Query: 269 DLT-----SDGRLNI-----------------ITVGGTSVLTIEDITGDDSGKYQVHVSN 306
D +D L + TI S YQ
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALM 165
Query: 307 Q-HGSDSCYASVAVEGR 322
S + V+
Sbjct: 166 GGRKVMSISIRLKVQKV 182
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 107 bits (269), Expect = 2e-29
Identities = 29/98 (29%), Positives = 46/98 (46%)
Query: 58 RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREK 117
+ + T + R P + G++ RF C G+P P +W + G+ + +AR +
Sbjct: 7 HSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT 66
Query: 118 EDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+ EIS V D G Y++ VEN+ G EA L I
Sbjct: 67 KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 78.2 bits (193), Expect = 2e-18
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
++L ++ +G+S F C P P ++W R +++ + +
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPT---VTWLRKGQVLSTSARHQVTTTKYK-- 69
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ +I V DEG ++ V N G+ L +
Sbjct: 70 ----STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 58.1 bits (141), Expect = 4e-11
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
G+ L++ R + T S I + D G Y V V N G ++ ++
Sbjct: 52 GQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 109 bits (273), Expect = 4e-29
Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 20/192 (10%)
Query: 74 NKICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
+ DLG + CS+ W K G +A + E + +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKVDSDD 59
Query: 132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV 191
G Y+ TA +++ P + + + E G++ C+ + V
Sbjct: 60 QWGEYSCVFLPE---PMGTANIQLHGPPRVKAVKSSEHINE------GETAMLVCKSESV 110
Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE-DEGEFTCRVANE 250
PP +W++ E + + + L I ++ E D G++ C +
Sbjct: 111 PPVTD-WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 169
Query: 251 LGEVVTSACLIV 262
G L V
Sbjct: 170 KGSDQAIITLRV 181
Score = 68.9 bits (168), Expect = 3e-14
Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 54/182 (29%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G + C + W + ++K D+ + + +
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------------QKTEFKVDSDD 59
Query: 239 DEGEFTCRVANE-------------------------LGEVVTSAC------LIVDVVKG 267
GE++C E GE C + D
Sbjct: 60 QWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY 119
Query: 268 KDLT---------SDGRLNIITVGGTSVLTIEDITG-DDSGKYQVHVSNQHGSDSCYASV 317
K S+ R + + G S L IE++ D G+Y+ + ++ GSD ++
Sbjct: 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Query: 318 AV 319
V
Sbjct: 180 RV 181
Score = 58.9 bits (142), Expect = 1e-10
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATP------NARVTIREK 117
PR AV ++ + G+T C P W W K +R +
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA-WYKITDSEDKALMNGSESRFFVSSS 142
Query: 118 EDLRFLEISEVTLE-DAGLYTIKVENNYGSVEATARLEI 155
+ L I + +E D G Y ++ GS +A L +
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 31.2 bits (70), Expect = 0.27
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 3/53 (5%)
Query: 273 DGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
G + + + D G+Y + A++ + G +
Sbjct: 37 GGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMG---TANIQLHGPPRV 86
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 106 bits (266), Expect = 6e-29
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
++S P + +F TG+P P W+KDGK T + + E +
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
FLEI + D+GLYT V+N+ GSV ++ +L I
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 82.7 bits (205), Expect = 4e-20
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 161 IISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQV 219
I S+P ++ GL++ F + P P W ++ + I ++
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRP---TAIWTKDGKAITQGGK----YKL 55
Query: 220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
+ L+I D G +TC V N G V +S L + +
Sbjct: 56 SEDKG--GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 57.3 bits (139), Expect = 7e-11
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
GK +T G+ + G L I DSG Y V N GS S + ++
Sbjct: 44 GKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 114 bits (286), Expect = 1e-28
Identities = 33/288 (11%), Positives = 67/288 (23%), Gaps = 62/288 (21%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
S D+ ++ Q V W ++ + + +
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MV 106
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
I ++T AG Y + +++ + + I + R +E +
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME-------NQDAL 159
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C + VP + W + + + P V ++ ++ +
Sbjct: 160 VCISESVPE--PIVEWVLCDSQGESCKEESPAVVKKEEKV----------LHELFGTDIR 207
Query: 245 CRVANELGEVVTSACLIVDVVK------------------------------------GK 268
C NELG T I K
Sbjct: 208 CCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENK 267
Query: 269 DLTSDGRLNIITVGGT------SVLTIEDITGDDSGKYQVHVSNQHGS 310
L + T + + +D+G Y S
Sbjct: 268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Score = 114 bits (285), Expect = 2e-28
Identities = 33/310 (10%), Positives = 69/310 (22%), Gaps = 65/310 (20%)
Query: 58 RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIRE 116
R + + +G+ + +C +W + K +
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMST 279
Query: 117 KEDLR------FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNG 170
R F +S V D G YT + +A + I++ I N
Sbjct: 280 YSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFI----NATNS 332
Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
E+ + F + + P +W + + + +
Sbjct: 333 SEDYEIDQYEEFCFSVRFKAYPQ--IRCTWTFSRKSFPCEQKGLDNGYS----------I 380
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV-----DVVKGKDLT----SDG------- 274
+ GE+ N+ + L + + + SDG
Sbjct: 381 SKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWT 440
Query: 275 -----------------------RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSD 311
+ S T+ + N G+
Sbjct: 441 WKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTS 500
Query: 312 SCYASVAVEG 321
+ G
Sbjct: 501 CETILLNSPG 510
Score = 104 bits (261), Expect = 3e-25
Identities = 27/290 (9%), Positives = 69/290 (23%), Gaps = 51/290 (17%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
+ Y + + + C P P W + + E
Sbjct: 139 NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK----E 194
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
+ N G +++ L G+ +
Sbjct: 195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLK--------VGEPLW 246
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
C+ V ++W N+ ++ + + ++ + I + V D G +
Sbjct: 247 IRCKAVHVNHG-FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305
Query: 244 TCRVANELGEVVTSACLIV---------------DVVKGKDL----------------TS 272
TC + SA + + ++ + ++ T
Sbjct: 306 TCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF 362
Query: 273 DGR---LNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
+ + ++ G+Y H N + ++ +
Sbjct: 363 SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 50.1 bits (119), Expect = 5e-07
Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 11/103 (10%)
Query: 75 KICDLGDTVRFQCSVTGQPAPWTSWSK-------DGKPATPNARVTIREKEDLR----FL 123
++ + C G P P +W K + T ++
Sbjct: 417 QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS 476
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
++ L N+ G+ T L P I
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGG 519
Score = 40.5 bits (94), Expect = 5e-04
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 266 KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
K L ++ G + I +T +G+Y + + ++ + + +V++ +
Sbjct: 85 KHSSLNCQPHFDLQN-RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLY 143
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 111 bits (279), Expect = 2e-28
Identities = 35/226 (15%), Positives = 66/226 (29%), Gaps = 21/226 (9%)
Query: 49 TPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCS-------VTGQPAPWTSWSK 101
P++L A T S + G+ V +C + P +W K
Sbjct: 2 DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK 61
Query: 102 DGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
+ T R L + ED+G Y N + + L + +
Sbjct: 62 NDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA 121
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH---DISWFRNNRLIKLDSDMKPEVQ 218
+ L S C D I W++++ L+ D++ V+
Sbjct: 122 FLPFISYPQILTL----STSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR 177
Query: 219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
+ L + V ED G + C + + +++
Sbjct: 178 GTTH-------LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIEL 216
Score = 107 bits (268), Expect = 6e-27
Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 18/205 (8%)
Query: 71 VPHNKICDLGDTVRFQCS-----VTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
+ + +I L + C + W KD + + + L +
Sbjct: 126 ISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTH-LLV 184
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI---MDPRAIISRPKVLNGLENLRCCDGDSV 182
+V LEDAG Y + + + I + + + P +++ L+ + G +
Sbjct: 185 HDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRL 244
Query: 183 TFECQVQVVPPND-HDISWFRNNRLIKLDSDMKPEVQVDSK-------ENLVIARLKIPH 234
T C+V + + W+ N + V + EN + L
Sbjct: 245 TIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDP 304
Query: 235 VYPEDEG-EFTCRVANELGEVVTSA 258
V ED +F C V N L
Sbjct: 305 VTREDLHMDFKCVVHNTLSFQTLRT 329
Score = 74.3 bits (182), Expect = 3e-15
Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 67/235 (28%)
Query: 133 AGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP 192
A +T++ + G+ + R K LE G+ V C
Sbjct: 1 ADPFTLQPAAHTGAARS--------CRFRGRHYKREFRLE------GEPVALRCPQVPYW 46
Query: 193 PNDH-----DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
+++W +N+ + + + + L + ED G + C
Sbjct: 47 LWASVSPRINLTWHKNDSARTVPGEEETRMWAQD------GALWLLPALQEDSGTYVCTT 100
Query: 248 ANELGEVVTSACLIV---------------DVVKGKDLT--------------------- 271
N S L V +
Sbjct: 101 RNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWY 160
Query: 272 ------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
++V GT+ L + D+ +D+G Y+ ++ H + ++E
Sbjct: 161 KDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
Score = 61.2 bits (148), Expect = 8e-11
Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 17/120 (14%)
Query: 52 SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSV---TGQPAPWTSWSKDGKPATP 108
S+ I+ ++ + P + LG + C V TG P W
Sbjct: 213 SIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272
Query: 109 NARVTIREKEDLRF-------------LEISEVTLEDAGL-YTIKVENNYGSVEATARLE 154
+A R E R L VT ED + + V N ++
Sbjct: 273 SAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 107 bits (268), Expect = 3e-28
Identities = 34/208 (16%), Positives = 59/208 (28%), Gaps = 31/208 (14%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRF 122
F P N G T +C + P W +DG+ + + + ED +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 123 -------LEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPRAIISRPKVLNGLENL 174
L I+ + L D G Y V + + + + + P E+
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEP------EDR 116
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
CQ Q P + W ++ + P+ +L + L
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVD-LLWLQDAVPLATAPGHGPQR------SLHVPGL---- 165
Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIV 262
F+C N G + I
Sbjct: 166 ---NKTSSFSCEAHNAKGVTTSRTATIT 190
Score = 67.2 bits (164), Expect = 2e-13
Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 39/186 (20%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQV--VPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
+ N+ G + T CQ+QV PP + W R+ ++++L + +V +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPE---VHWLRDGQILELADSTQTQVPLGE 58
Query: 222 KEN---LVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIV-------------DV 264
E +V+++L+I + D G++ C V V+ + + V
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTV 118
Query: 265 VKGKDLT-----------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQ 307
D G ++ + + + N
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNA 178
Query: 308 HGSDSC 313
G +
Sbjct: 179 KGVTTS 184
Score = 66.5 bits (162), Expect = 3e-13
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 9/96 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLE 124
P F P ++ C G P P W +D P
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-------HGPQRS 159
Query: 125 ISEVTLEDAGLYTIKVENNYGSVE-ATARLEIMDPR 159
+ L ++ + N G TA + ++ +
Sbjct: 160 LHVPGLNKTSSFSCEAHNAKGVTTSRTATITVLPQQ 195
Score = 35.6 bits (82), Expect = 0.009
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 271 TSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS-DSCYASVAVEG 321
G S L I + D+G+YQ V H + S V +EG
Sbjct: 54 VPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 104 bits (260), Expect = 5e-28
Identities = 23/93 (24%), Positives = 37/93 (39%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P F P G +C V G+P P W K G+ + R++ L +
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 73
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ DAG+Y + N G A A + +++P
Sbjct: 74 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 82.0 bits (203), Expect = 9e-20
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
S P L +R G +C V P P + W + + + + D
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPP---VVVWEKGGQQLAASERLS--FPADG 66
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
E L + P D G + CR N GE +A + V
Sbjct: 67 AE----HGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 52.4 bits (126), Expect = 4e-09
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
G+ L + RL+ G L + D+G Y N G A+V V
Sbjct: 51 GQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 103 bits (259), Expect = 7e-28
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDLRFL 123
P+ A+P + D G + C+ TG+P P +WS G+ + R I +DL L
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
I +V +D GLYT+ + N +GS AT + I
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 76.6 bits (189), Expect = 6e-18
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
PK+ ++ +G +T C P P +++W R I + ++
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTP---EVTWSCGGRKIHSQEQGRFHIENTDD- 61
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ L I V +D G +T + NE G + + +
Sbjct: 62 ---LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 55.4 bits (134), Expect = 3e-10
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 267 GKDLTSD--GRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
G+ + S GR +I + L I D+ D G Y + + N+ GSDS ++ +
Sbjct: 43 GRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 102 bits (255), Expect = 3e-27
Identities = 26/96 (27%), Positives = 41/96 (42%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
+S P+ P ++ G++V VTG +W K K + + + E+
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
L I E G YT+ VEN GS +A L ++D
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 70.8 bits (174), Expect = 2e-15
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P+++ E+ + G+SV +V P +W + + I+ MK E +
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPIT--CTWMKFRKQIQESEHMKVENSENG--- 62
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
++L I E G +T V N+LG L V
Sbjct: 63 ---SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
Score = 61.6 bits (150), Expect = 3e-12
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
K + + + S LTI + G Y + V N+ GS ++ V +
Sbjct: 45 RKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 99.7 bits (249), Expect = 2e-26
Identities = 18/90 (20%), Positives = 30/90 (33%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P+ G T + G P P +W+ A + + K +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFF 62
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
D+G Y +KV+N G EA + +
Sbjct: 63 PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 72.0 bits (177), Expect = 3e-16
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
+PK+L ++ G + E P +W + L + + VD+K
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPD--PTATWTVGDSGAALAPE----LLVDAKS 55
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ + P D G + +V NELGE +IV
Sbjct: 56 STTS--IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 60.0 bits (146), Expect = 7e-12
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
L + T+ + DSG Y++ V N+ G D V V+
Sbjct: 40 DSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 98.9 bits (247), Expect = 3e-26
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRFLE 124
P F ++ G V V G+P P SW ++ +P P+ R + L L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
I DAG YT K N YG+ + ARLE+
Sbjct: 66 ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 82.3 bits (204), Expect = 5e-20
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
P L + +G V +VQ P P +SW RN + ++ D E
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKP---VVSWLRNRQPVRPDQRRFAEEAEGG-- 60
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
+ RL+I D G +TC+ NE G A L V+G+
Sbjct: 61 ---LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE---VRGE 99
Score = 50.4 bits (121), Expect = 2e-08
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 271 TSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
R GG L I D+G Y N++G+ C A + V G
Sbjct: 48 PDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 104 bits (261), Expect = 4e-26
Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 11/220 (5%)
Query: 51 YSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPN 109
I + P + + C + + +W K+ + +
Sbjct: 114 GDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID 173
Query: 110 ARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR---PK 166
+ ++L I LED+G Y V + ++ + +I
Sbjct: 174 GTKYSQSGQNLI---IHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRF 230
Query: 167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKEN 224
L + G+ C D I W + I + D + S
Sbjct: 231 KLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI-IGLDFGVYSILTSSGG 289
Query: 225 LVIARLKIPHVYPEDEGE-FTCRVANELGEVVTSACLIVD 263
+ A L +V E G +TCR N + + ++++
Sbjct: 290 ITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 82.6 bits (203), Expect = 4e-18
Identities = 47/308 (15%), Positives = 86/308 (27%), Gaps = 87/308 (28%)
Query: 79 LGDTVRFQCSVTG---------QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVT 129
LG+ +C +W K GK P + + L I+ T
Sbjct: 43 LGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP-----LNRRVKNGDLWIANYT 97
Query: 130 LEDAG-LYTIKVENNYGS-VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQ 187
D+ Y V G V+ R I P + I L + + C
Sbjct: 98 SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHD------KYGIDLYCG 151
Query: 188 VQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
+ ++I+W++NN+ + +D +K + L I + ED G + C V
Sbjct: 152 ILYAKH-YNNITWYKNNQELIIDG---------TKYSQSGQNLIIHNPELEDSGRYDCYV 201
Query: 248 ANELGEVVTSACL----------------------IVDVVKGKDLT-------------- 271
+ + + ++V G+
Sbjct: 202 HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDD 261
Query: 272 --------------SDGRLNIITVG----GTSVLTIEDITGDDSGK-YQVHVSNQHGSDS 312
D + I + L E++T + G Y N + +
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321
Query: 313 CYASVAVE 320
+V +E
Sbjct: 322 LTTTVVLE 329
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 98.2 bits (245), Expect = 8e-26
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
P F P + G R C V+G P P SW DGKP P++ + +E+ + L
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
I VT DAG+YT N G + L + + S
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
Score = 80.1 bits (198), Expect = 5e-19
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
RP L +L +G +C+V +P P D+SW + + ++ DS K V+ +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP---DLSWQLDGKPVRPDSAHKMLVRENG- 64
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
+ L I V D G +TC N G+ S L+V
Sbjct: 65 ----VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102
Score = 52.0 bits (125), Expect = 7e-09
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
GK + D ++ G L IE +T D+G Y +N+ G +S + V +
Sbjct: 47 GKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 97.8 bits (244), Expect = 1e-25
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
PRF VP N D G R V+G PAP SW +G+ + + E L L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
V DAG Y +N G T +L++
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 79.3 bits (196), Expect = 6e-19
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
P+ + EN+ +G + +V +P P D+SW+ N R ++ D K V
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAP---DVSWYLNGRTVQSDDLHKMIVSEKG-- 60
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ L V D G + C N GE + L V
Sbjct: 61 ---LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 51.9 bits (125), Expect = 5e-09
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
G+ + SD +I G L E + D+G Y N+ G + + V ++
Sbjct: 43 GRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 97.9 bits (244), Expect = 1e-25
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVT 113
+ +P F P +K GD+V+ +C ++ P P W ++ + N R++
Sbjct: 5 HHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRIS 64
Query: 114 IREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ + R L I +V +DAG YT+ N G RL++
Sbjct: 65 LYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 82.8 bits (205), Expect = 5e-20
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 145 GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRN 203
G E P + ++ + +GDSV ECQ+ +P P + W RN
Sbjct: 2 GHHHHHHSHEHKRA------PMFIYKPQSKKVLEGDSVKLECQISAIPPP---KLFWKRN 52
Query: 204 NRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
N +++ ++D Q +N L I V +D G +T NE G + L V
Sbjct: 53 NEMVQFNTDRISLYQ----DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
Query: 264 V 264
Sbjct: 109 A 109
Score = 47.0 bits (112), Expect = 4e-07
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 267 GKDLTSDGRLNIITV--GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+ + + + G L I+D+ D+G Y V N+ G +C + V R
Sbjct: 53 NEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 97.4 bits (243), Expect = 2e-25
Identities = 20/97 (20%), Positives = 35/97 (36%)
Query: 62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
L +PR + G RF +V +P W +G ++++ +
Sbjct: 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL 64
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
LEI + +D+G Y N G A L++
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 85.0 bits (211), Expect = 6e-21
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
P++ + + R G + F VQ P ++ W+ N ++ S + +
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTA---EVKWYHNGVELQESSK----IHYTNTS 61
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
++ L+I + +D G + N GE A L V G D
Sbjct: 62 GVL--TLEILDCHTDDSGTYRAVCTNYKGEASDYATLD---VTGGD 102
Score = 57.7 bits (140), Expect = 5e-11
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
G +L +++ G L I D DDSG Y+ +N G S YA++ V G
Sbjct: 46 GVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 96.0 bits (239), Expect = 4e-25
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 59 TRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE 118
T R +AVP +TV+F+C G P P W K+GK R+ +
Sbjct: 8 TNTEKMEKRLHAVP------AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 119 DLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
+ + L + V D G YT VEN YGS+ T L+++
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 68.2 bits (167), Expect = 1e-14
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 178 DGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
++V F C P P + W +N + K + + + L + V
Sbjct: 22 AANTVKFRCPAGGNPMPT---MRWLKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVV 73
Query: 237 PEDEGEFTCRVANELGEVVTSACLIV 262
P D+G +TC V NE G + + L V
Sbjct: 74 PSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
GK+ + R+ V L +E + D G Y V N++GS + + V
Sbjct: 46 GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 96.8 bits (241), Expect = 9e-25
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 6/147 (4%)
Query: 22 MSGHSTPRSTPRS-TPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLG 80
+SG S +++ S T P + + + + + + + P F + G
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENED----AFLEEVAEEKPHVKPYFTKTILDMEVVEG 56
Query: 81 DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LEISEVTLEDAGLYTIK 139
RF C V G P P W KD P + I E+ L ISEV +D YT K
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 140 VENNYGSVEATARLEIMDPRAIISRPK 166
N+ G TA L +
Sbjct: 117 AVNSLGEATCTAELLVETMGKEGEGEG 143
Score = 90.7 bits (225), Expect = 2e-22
Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 129 TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV 188
+ +G N A LE + +P + ++ +G + F+C+V
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65
Query: 189 QVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
+ P P ++ WF+++ +K + + + L I V +D+ ++TC+
Sbjct: 66 EGYPDP---EVMWFKDDNPVKESRHFQIDYDEEG-----NCSLTISEVCGDDDAKYTCKA 117
Query: 248 ANELGEVVTSACLIVDVV 265
N LGE +A L+V+ +
Sbjct: 118 VNSLGEATCTAELLVETM 135
Score = 47.5 bits (113), Expect = 5e-07
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 267 GKDLTSDGRLNIITVG-GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+ I G LTI ++ GDD KY N G +C A + VE
Sbjct: 79 DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 99.6 bits (248), Expect = 9e-25
Identities = 38/281 (13%), Positives = 76/281 (27%), Gaps = 73/281 (25%)
Query: 80 GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
+TV C V P + W +G + I+ ++ D+G Y
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS----------YRITSASVNDSGEYRC 65
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
+ + S +LEI ++ + +G+ + C +++
Sbjct: 66 QRGLSGRS--DPIQLEIHRGWLLLQVS-------SRVFTEGEPLALRCHAWKDKLV-YNV 115
Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
++RN + K + L I G + C +
Sbjct: 116 LYYRNGKAFKFFHWN--------------SNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161
Query: 259 CLIV---------------DVVKGKDLT--------------------SDGRLNIITVGG 283
+ V +++G +T G +
Sbjct: 162 SVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT 221
Query: 284 TSVLTIEDITGDDSGKYQVHVSNQHGS---DSCYASVAVEG 321
+S I +DSG Y + + G+ S + V G
Sbjct: 222 SSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 66.9 bits (163), Expect = 6e-13
Identities = 28/171 (16%), Positives = 49/171 (28%), Gaps = 45/171 (26%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
++VT C+V +P + WF N + + +I
Sbjct: 16 EETVTLHCEVLHLPGS-SSTQWFLNGTATQTSTP----------------SYRITSASVN 58
Query: 239 DEGEFTCRVAN-----ELGEVVTSACLIVD-----VVKGKDLT----------------- 271
D GE+ C+ + + L++ +G+ L
Sbjct: 59 DSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 272 SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+G+ S LTI +G Y +H S SV V+
Sbjct: 119 RNGKA-FKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL 168
Score = 48.0 bits (114), Expect = 1e-06
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 15/111 (13%)
Query: 52 SLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP-----WTSWSKDGKPA 106
S ++ + L +P A + + + G+ V C + S+ K
Sbjct: 158 SAGISVTVKELFPAPVLNASVTSPLLE-GNLVTLSCETKLLLQRPGLQLYFSFYMGSKT- 215
Query: 107 TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE-ATARLEIM 156
+R + +I ED+GLY + G+V + LE+
Sbjct: 216 -------LRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQ 259
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 95.5 bits (238), Expect = 1e-24
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 50 PYSLNSAIRTRRLTSSPRFYAVPHNK---ICDLGDTVRFQCSVTGQPAPWTSWSKDGKPA 106
+L + R + P+ H + I +G+ + G+P P W+K G P
Sbjct: 6 SGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL 65
Query: 107 TPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ RV +R + + + D+G Y + V+ AT R+ +++
Sbjct: 66 DTS-RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 57.0 bits (138), Expect = 1e-10
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G+ + Q P + W + + V V + + + +
Sbjct: 39 GEQLNLVVPFQGKPR--PQVVWTKGGAPLDTS-----RVHVRTSDFDTV--FFVRQAARS 89
Query: 239 DEGEFTCRVANELGEVVTSACLIV 262
D GE+ V E + + + V
Sbjct: 90 DSGEYELSVQIENMKDTATIRIRV 113
Score = 53.5 bits (129), Expect = 3e-09
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
G L + R+++ T +V + DSG+Y++ V ++ D+ + V +
Sbjct: 62 GAPLDTS-RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 99.4 bits (247), Expect = 2e-24
Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 6/200 (3%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKEDLRFL 123
+ + V +C +T S + DGK + K +
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITI- 149
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
+ + + G+ + + + AI + P V + GD+ T
Sbjct: 150 -KNVKRAYHRLCVRCAAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT 207
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI-ARLKIPHVYPEDEGE 242
C ++ V + + W + N + + +K N L I +D G
Sbjct: 208 VVCTIKDVSTS-VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGV 266
Query: 243 FTCRVANELGEVVTSACLIV 262
F C N G + L V
Sbjct: 267 FMCYANNTFGSANVTTTLKV 286
Score = 80.9 bits (199), Expect = 1e-17
Identities = 41/309 (13%), Positives = 71/309 (22%), Gaps = 80/309 (25%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
S P + I + GDT+ C W+ +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYF-------NEMVENKKNEW 59
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
+ G YT N S + + + DP + L G E
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFLVGLPLFGKE------DSDAL 110
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
C + + S + L +D+ + K + I +
Sbjct: 111 VRCPLTDPQVSQ--YSLIECDGK-SLPTDLT--FVPNPKAGITIKNV----KRAYHRLCV 161
Query: 244 TCRVANELGEVVTSACLIVDVVK-------------------GKDLT------------- 271
C + G + S + V + G T
Sbjct: 162 RCAAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVN 220
Query: 272 ------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
+ LTI DDSG + + +N GS +
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV 280
Query: 314 YASVAVEGR 322
++ V +
Sbjct: 281 TTTLKVVEK 289
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 97.0 bits (241), Expect = 2e-24
Identities = 30/196 (15%), Positives = 52/196 (26%), Gaps = 30/196 (15%)
Query: 79 LGDTVRFQCS---VTGQPAPWTSWSKDGKPATP-----------------NARVTIREKE 118
LG+ V V+ P SW K G I
Sbjct: 5 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA 64
Query: 119 DLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
+ FL ++ + G Y +++ V L ++ P + E + D
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHS------ERSQFPD 118
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
+T C V P + W + + V + +L + +
Sbjct: 119 FSVLTVTCTVNAFPHP--HVQWLMPEGVEPAPTAANGGVMKEKDGSLSV--AVDLSLPKP 174
Query: 239 DEGEFTCRVANELGEV 254
TC N+ E
Sbjct: 175 WHLPVTCVGKNDKEEA 190
Score = 63.1 bits (153), Expect = 4e-12
Identities = 11/88 (12%), Positives = 18/88 (20%), Gaps = 4/88 (4%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK----DGKPATPNARVTIREKEDLR 121
+ C+V P P W + P N V + L
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEA 149
+ T +N+
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
Score = 49.6 bits (118), Expect = 2e-07
Identities = 26/194 (13%), Positives = 42/194 (21%), Gaps = 53/194 (27%)
Query: 179 GDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR-------- 229
G+ VT + V ++SWF+ + + V E
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 230 ---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVVKGKDLT-- 271
L + +G + CR+ EV L V LT
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125
Query: 272 -------------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSN 306
++G + G SV + N
Sbjct: 126 CTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKN 185
Query: 307 QHGS-DSCYASVAV 319
Y S +
Sbjct: 186 DKEEAHGVYVSGYL 199
Score = 36.9 bits (85), Expect = 0.004
Identities = 7/52 (13%), Positives = 14/52 (26%)
Query: 274 GRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
G +I T L + G Y + + ++V +
Sbjct: 56 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTL 107
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 98.6 bits (245), Expect = 7e-24
Identities = 36/211 (17%), Positives = 57/211 (27%), Gaps = 22/211 (10%)
Query: 71 VPHNKICDLGDTVRFQCS------VTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
+ + C P W KD KP + K+ L
Sbjct: 109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI--- 165
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIM---DPRAIISRPKVLNGLEN-LRCCDGD 180
+ V + G YT Y + I +RP +++ + G
Sbjct: 166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGS 225
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSD------MKPEVQVDSKENLVIARLKIPH 234
+ C V + W N +I D E + + + +I L I
Sbjct: 226 QIQLICNVTGQLSDI--AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISE 283
Query: 235 VYPED-EGEFTCRVANELGEVVTSACLIVDV 264
+ + FTC N G LI V
Sbjct: 284 IESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
Score = 94.8 bits (235), Expect = 1e-22
Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 16/191 (8%)
Query: 80 GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
+ C + T +W KD + R + L +ED+G Y
Sbjct: 20 NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 79
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPND--- 195
V N+ + + ++ + + + C N+
Sbjct: 80 VVRNSSYCLRIKISAKFVENEPNLCYNA--QAIFKQKLPVAGDGGLVCPYMEFFKNENNE 137
Query: 196 -HDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254
+ W+++ + + LD+ + V RL + +V + G +TC +
Sbjct: 138 LPKLQWYKDCKPLLLDN---------IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 188
Query: 255 VTSACLIVDVV 265
+++ +
Sbjct: 189 QYPITRVIEFI 199
Score = 65.1 bits (158), Expect = 4e-12
Identities = 21/185 (11%), Positives = 44/185 (23%), Gaps = 50/185 (27%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
+ C + I+W++++ + ++ + + +L E
Sbjct: 20 NEIDVRPCPLNPNEHK-GTITWYKDDSKTPVSTEQASRIHQHKE------KLWFVPAKVE 72
Query: 239 DEGEFTCRVANELGEVVTSACLIV-----------------DVVKGKDLT---------- 271
D G + C V N + + D
Sbjct: 73 DSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFK 132
Query: 272 ------------SDGRL----NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYA 315
D + NI G L + ++ G Y H S +
Sbjct: 133 NENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPI 192
Query: 316 SVAVE 320
+ +E
Sbjct: 193 TRVIE 197
Score = 62.8 bits (152), Expect = 2e-11
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 14/102 (13%)
Query: 66 PRFYAVPHNKI-CDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE------ 118
P + + + DLG ++ C+VTGQ + W +G + V +
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268
Query: 119 ------DLRFLEISEVTLED-AGLYTIKVENNYGSVEATARL 153
+ L ISE+ +T +N +G A +L
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 93.2 bits (232), Expect = 7e-24
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 60 RRLT----SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR 115
R+LT +P N+ +G+++ C+ +G P P W KD + ++ + +
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL- 59
Query: 116 EKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
K+ R L I V ED GLYT + + G + A I
Sbjct: 60 -KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
Score = 83.5 bits (207), Expect = 3e-20
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSD--MKPEVQVDS 221
P + LEN G+S+ C P P I WF++N + DS +K +
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPP---QIMWFKDNETLVEDSGIVLKDGNR--- 64
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
L I V EDEG +TC+ + LG A I++
Sbjct: 65 -------NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 48.9 bits (117), Expect = 9e-08
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
+ L D I+ G LTI + +D G Y + G A +EG
Sbjct: 48 NETLVEDSG--IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 97.6 bits (242), Expect = 3e-23
Identities = 30/254 (11%), Positives = 69/254 (27%), Gaps = 36/254 (14%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
G ++ +P + L +S++ L+D+G +T
Sbjct: 111 GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCT 160
Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNG----------LENLRCCDGDSVTFECQVQ 189
V N VE + ++ + S G + + ++ +
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
+ +N + P++Q+ K L + L G T +
Sbjct: 221 SSSKSWITFDL-KNKEVSVKRVTQDPKLQMGKKLPLHL-TLPQALPQYAGSGNLTLALEA 278
Query: 250 ELGEVVTSACLIVDVVKGKDLT----SDG----------RLNIITVGGTSVLTIEDITGD 295
+ G++ L+V G +L + +
Sbjct: 279 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP 338
Query: 296 DSGKYQVHVSNQHG 309
++G +Q +S+
Sbjct: 339 EAGMWQCLLSDSGQ 352
Score = 78.7 bits (193), Expect = 1e-16
Identities = 33/250 (13%), Positives = 65/250 (26%), Gaps = 50/250 (20%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----------------- 122
GDTV C+ + + + W + + + K +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
L I + +ED+ Y +VE+ V+ + + + G S+
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ--------------GQSL 114
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
T + + L + + +D G
Sbjct: 115 TLTLESPPGSS--PSVQCRSPRGKNIQGGK----------------TLSVSQLELQDSGT 156
Query: 243 FTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQV 302
+TC V +V ++V + K + + V + L SG+
Sbjct: 157 WTCTVLQNQKKVEFKIDIVVLAFQ-KASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW 215
Query: 303 HVSNQHGSDS 312
S S
Sbjct: 216 QAERASSSKS 225
Score = 69.8 bits (170), Expect = 1e-13
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 31/174 (17%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI----------- 227
GD+V C W +N++ L + + SK N
Sbjct: 9 GDTVELTCTASQKKS--IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI-----VDVVKGKDLT----SDG---- 274
L I ++ ED + C V ++ EV + +++G+ LT S
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 126
Query: 275 -----RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
+ G L++ + DSG + V + V +
Sbjct: 127 SVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 180
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 90.8 bits (226), Expect = 4e-23
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI-REKEDLRFLE 124
P+ + ++ G F+ V G+P P W K+G + R+ ++++ L
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 65
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
I +VT ED+ +K N G + A L +
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 85.0 bits (211), Expect = 6e-21
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVD 220
+ PK+ +++ G F +V P P + W++N I+ +
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDP---ECEWYKNGVKIERSDRIY---WYW 56
Query: 221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
++N + L I V ED + N GE + A L+V
Sbjct: 57 PEDN--VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 55.4 bits (134), Expect = 3e-10
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 267 GKDLTSDGRLNIITV-GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
G + R+ L I D+TG+DS V N G S +A + V+ +
Sbjct: 43 GVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 95.9 bits (238), Expect = 6e-23
Identities = 47/307 (15%), Positives = 85/307 (27%), Gaps = 68/307 (22%)
Query: 71 VPHNKICDLGDTVRFQCSVTGQPAPWT-----SWSKDGKPAT-----PNARVTIREKEDL 120
P LGD+V C + T +W++ G+ + + E + L
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 121 RF-------------LEISEVTLEDAGLYTIKVENN-YGSVEATARLEIMDPRAIISRPK 166
F L + + +ED G YT GS L ++ P+
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK------PQ 119
Query: 167 VLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLV 226
++ ++ C P I+W + + S S V
Sbjct: 120 NTAEVQKVQLTGEPVPMARCVSTGGRPPA-QITWHSDLGGMPNTSQ---VPGFLSGTVTV 175
Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV----------------VKGKDL 270
+ + D TC+V +E E + + V + +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEA 235
Query: 271 T------------------SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
T + G L V + L I + + +V+N G+
Sbjct: 236 TLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQ 295
Query: 313 CYASVAV 319
+V V
Sbjct: 296 AELTVQV 302
Score = 90.9 bits (225), Expect = 3e-21
Identities = 33/203 (16%), Positives = 51/203 (25%), Gaps = 24/203 (11%)
Query: 66 PRFYAVPHNKICDLGDTVRFQC-SVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-- 122
P+ A +C S G+P +W D ++V +
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177
Query: 123 -LEISEVTLEDAGLYTIKVENNYG--SVEATARLEIMDPRAIISRPKVLNGLENLRCCDG 179
+ + D T KVE+ T L + P + N
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG-----Q 232
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
+ T C + P +W + P V L+I V
Sbjct: 233 NEATLTCDARSNPEP-TGYNWSTTMGPL-------PPFAVAQGAQLLI-----RPVDKPI 279
Query: 240 EGEFTCRVANELGEVVTSACLIV 262
C V N LG + V
Sbjct: 280 NTTLICNVTNALGARQAELTVQV 302
Score = 50.5 bits (120), Expect = 2e-07
Identities = 33/198 (16%), Positives = 52/198 (26%), Gaps = 56/198 (28%)
Query: 179 GDSVTFECQVQVVPPNDHD---ISWFRNNR---LIKLDSDMKPEVQVDSKENLVIAR--- 229
GDSVT C +QV ++W R+ + P + V AR
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 230 ------LKIPHVYPEDEGEFTCRVAN-ELGEVVTSACLIV-------------DVVKGKD 269
L++ + EDEG +TC G L V +
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPV 134
Query: 270 LT-----SDGR----------------------LNIITVGGTSVLTIEDITGDDSGKYQV 302
+ GR TV TS+ + + D
Sbjct: 135 PMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTC 194
Query: 303 HVSNQHGSDSCYASVAVE 320
V ++ +V +
Sbjct: 195 KVEHESFEKPQLLTVNLT 212
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 95.7 bits (237), Expect = 6e-23
Identities = 41/256 (16%), Positives = 83/256 (32%), Gaps = 43/256 (16%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTG---QPAPWT-SWSKDGKPATPNARVTIREKEDL 120
+ + + GD +V G P+ T +W+KD +P N
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
L +++ T E+AG Y + V++ + + +M+ + + ++
Sbjct: 54 --LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL---IVNITEPQHFYVSSQT 108
Query: 181 SVTFECQVQVV----PPNDHDIS--WFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
V V+ P +++++ W + +I D + I
Sbjct: 109 DVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD-----------------ITIQE 151
Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLT---IED 291
+ G +T +V E + SA + + + +G L ED
Sbjct: 152 FTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSED 211
Query: 292 ITGDDSGKYQVHVSNQ 307
I GD SG + +
Sbjct: 212 IVGDSSGMPNLTIKYN 227
Score = 74.1 bits (181), Expect = 3e-15
Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 33/231 (14%)
Query: 54 NSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSV---TGQPAPWT-----SWSKDGKP 105
S + P + V +V G+ SWSK
Sbjct: 81 ESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDV 140
Query: 106 ATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
+ I E T + G+YT+KV A+A +IM + +
Sbjct: 141 IDTTQD-----------ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD 189
Query: 166 KVLNGLENLRCCDGDSVTFECQVQV--------VPPNDHDISWF--RNNRLIKLDSDMKP 215
+E+ G+ ++ V +P +W+ R +L +
Sbjct: 190 ----VVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEV 245
Query: 216 EVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
++ L +D +F C + + +
Sbjct: 246 GEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSR 296
Score = 64.1 bits (155), Expect = 8e-12
Identities = 27/193 (13%), Positives = 53/193 (27%), Gaps = 54/193 (27%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS--WFRNNRLIKLDSDMKPEVQVDSK 222
V GD T V P +++ W ++++ + ++
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------- 51
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV----------------DVVK 266
A L + E+ G + V + + + + V
Sbjct: 52 -----ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS 106
Query: 267 GKDLT-------SDG-------------RLNIITVGGTSVLTIEDITGDDSGKYQVHVSN 306
D+ S G + T +TI++ T D +G Y V V
Sbjct: 107 QTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWG 166
Query: 307 QHGSDSCYASVAV 319
+ + AS +
Sbjct: 167 ESEDSAASASTKI 179
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 89.7 bits (223), Expect = 1e-22
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P F +V + G QCSV G P P +W +G+P + L I
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE---AGVAELHI 68
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+ ED G YT EN G V +A + +
Sbjct: 69 QDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 79.7 bits (197), Expect = 5e-19
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
P + L++ +G +C V+ P P I+W N + I+
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPR---ITWLLNGQPIQYA----RSTCEAG-- 62
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+A L I PED G +TC N LG+V SA + V
Sbjct: 63 ---VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 45.0 bits (107), Expect = 2e-06
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
G+ + G + L I+D +D G Y N G SC A V V
Sbjct: 49 GQPIQYARS---TCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 89.0 bits (221), Expect = 2e-22
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKED-L 120
+ +P F + G V F C V G P P W KDGK +P + TI+ D
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
L + TL+D G YTI N G + T RL +
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103
Score = 85.5 bits (212), Expect = 6e-21
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
P L++ + +G VTF C+V P P I WF++ + I SD ++
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPK---IYWFKDGKQISPKSD----HYTIQRD 61
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
L +D+G +T AN G + + L+V V
Sbjct: 62 LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103
Score = 49.7 bits (119), Expect = 5e-08
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 267 GKDLTSDGRLNIIT--VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
GK ++ I + GT L T DD G Y + +N G SC + V+
Sbjct: 46 GKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 94.9 bits (235), Expect = 3e-22
Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 22/221 (9%)
Query: 60 RRLTSSPRFYAVPHNKICDLGDTVRFQC-----SVTGQPAPWTSWSKDGKPATPNARVTI 114
++ + +P +K+ R C P +W V
Sbjct: 115 QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP 174
Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNY----GSVEATARLEIMDPRAIISRPKVLNG 170
L + + G YT V + T ++++ P + +
Sbjct: 175 EGM----NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP 230
Query: 171 LEN--LRCCDGDSVTFECQVQVVPPND--HDISWFRNNRLIKLDSD----MKPEVQVDSK 222
++ G+ + C V D +++ W + + + + ++
Sbjct: 231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTE 290
Query: 223 ENLVIARLKIPHVYPEDEG-EFTCRVANELGEVVTSACLIV 262
+ L I V ED + C + GEV +A +
Sbjct: 291 DETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 77.2 bits (189), Expect = 3e-16
Identities = 31/202 (15%), Positives = 57/202 (28%), Gaps = 32/202 (15%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKE-----DLRFLEISEVTLEDAG 134
++F S W + + R E + L L D G
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92
Query: 135 LYTIKVENNYGSVEATARLEIMDPRAIISRPK--------VLNGLENLRCCDGDSVTFEC 186
YT + N + LE++ + + P + G++ + C + +
Sbjct: 93 NYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPN-----VDG 147
Query: 187 QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
I+W+ I+ +++ PE L + G +TC
Sbjct: 148 YFPSSVK--PTITWYMGCYKIQNFNNVIPEGM----------NLSFLIALISNNGNYTCV 195
Query: 247 VANELGEVV--TSACLIVDVVK 266
V + L V VV
Sbjct: 196 VTYPENGRTFHLTRTLTVKVVG 217
Score = 51.0 bits (121), Expect = 2e-07
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 18/125 (14%)
Query: 52 SLNSAIRTRRLTSSPRFYAVPHNKI---CDLGDTVRFQCSVT----GQPAPWTSWSKDGK 104
+L + + P P++ + + G+ + C+V W+ DGK
Sbjct: 210 TLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGK 269
Query: 105 PATPNAR----------VTIREKEDLRFLEISEVTLED-AGLYTIKVENNYGSVEATARL 153
++ + L I +VT ED Y + G V A++
Sbjct: 270 KPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329
Query: 154 EIMDP 158
+ P
Sbjct: 330 KQKVP 334
Score = 34.1 bits (77), Expect = 0.049
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
VL +D+G Y + N + V
Sbjct: 79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEV 113
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 93.3 bits (231), Expect = 7e-22
Identities = 37/200 (18%), Positives = 63/200 (31%), Gaps = 18/200 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
P N D+GD V +C V G+ W +A V L +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTEL--EQSATVMKSGGLPSLGLTL 216
Query: 126 SEVTLE-DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
+ VT + + T EN+ G E + ++ + P ++ V
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEM----------HHWCI 266
Query: 185 ECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI-ARLKIPHVYPEDEGE 242
V P P+ + W N ++ S + E + V L++ + G
Sbjct: 267 PFSVDGQPAPS---LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 323
Query: 243 FTCRVANELGEVVTSACLIV 262
+T AN G+ S
Sbjct: 324 YTLLAANPFGQASASIMAAF 343
Score = 72.5 bits (177), Expect = 2e-14
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF--- 122
F A SV GQPAP W +G + + E
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306
Query: 123 ----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
L +++ T + G YT+ N +G A+ MD
Sbjct: 307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
Score = 66.3 bits (161), Expect = 2e-12
Identities = 26/194 (13%), Positives = 41/194 (21%), Gaps = 48/194 (24%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P + + N GD V CQV+ W +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQ--AGWILTELEQSATVM---KSGGLPSLG 213
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK------------------ 266
L + + TC N++G S + V
Sbjct: 214 LTL----ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFS 269
Query: 267 --------------GKDLTSDGRLNI-------ITVGGTSVLTIEDITGDDSGKYQVHVS 305
G L + L + T ++G Y + +
Sbjct: 270 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 306 NQHGSDSCYASVAV 319
N G S A
Sbjct: 330 NPFGQASASIMAAF 343
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 90.2 bits (223), Expect = 1e-21
Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 5/185 (2%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
TV C + + ++ + I + + I + AG+ +
Sbjct: 24 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCE 82
Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS 199
+ N S ++ + ++ I VL+ + G+ + C + D +
Sbjct: 83 AKINDESYQSIMYIVVVVGYRIY--DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 140
Query: 200 WFRNNRLIKLDSDMKPEV--QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
W + + + ++ Q S+ ++ L I V D+G +TC ++ L S
Sbjct: 141 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200
Query: 258 ACLIV 262
+ V
Sbjct: 201 TFVRV 205
Score = 58.3 bits (140), Expect = 3e-10
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 10/97 (10%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAP-----WTSWSKDGKPATPNARVTIREKEDLRF---- 122
H +G+ + C+ + W S + R +
Sbjct: 112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 171
Query: 123 -LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
L I VT D GLYT + + + + + + +
Sbjct: 172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208
Score = 51.3 bits (122), Expect = 7e-08
Identities = 28/211 (13%), Positives = 49/211 (23%), Gaps = 59/211 (27%)
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
I+ +G+ + +V C + N +S + D + DS
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLGSISNLN---VSLCARYPEKRFVPDGN-RISWDS 62
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-----------------DV 264
K+ I P G C + ++V ++
Sbjct: 63 KKGFTI-----PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 117
Query: 265 VKGKDLT---------------------------------SDGRLNIITVGGTSVLTIED 291
G+ L + S LTI+
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177
Query: 292 ITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+T D G Y S+ + V V
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 86.2 bits (214), Expect = 2e-21
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
+ + + G V++ C + +W + + + I ++ + L + ++T
Sbjct: 8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITK 67
Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
D G Y KV N+YG + A L +
Sbjct: 68 LDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 85.4 bits (212), Expect = 3e-21
Identities = 19/103 (18%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 160 AIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQV 219
A++S + + +G V + C+++ + ++W+ R ++ ++
Sbjct: 2 AMVSGQ-----IMHAVGEEGGHVKYVCKIENYDQSTQ-VTWYFGVRQLENSEK----YEI 51
Query: 220 DSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
++ +A L + + D+G + C+V N+ GE + A L V
Sbjct: 52 TYEDG--VAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 62.3 bits (152), Expect = 1e-12
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
+ L + + I G ++L ++DIT D G Y+ V N +G DS YA + V+G +
Sbjct: 40 VRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 86.7 bits (215), Expect = 2e-21
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLE 124
+ G + F+C ++ W D P N I + L
Sbjct: 14 VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT 73
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
+ ++ L+D+G + G A+A L + + ++ SR
Sbjct: 74 LRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSG 111
Score = 73.2 bits (180), Expect = 2e-16
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 16/114 (14%)
Query: 149 ATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK 208
+ + + R ++ LE++ +G S TF C++ + WF + +
Sbjct: 3 SGSSGLVQGRR-----VHIIEDLEDVDVQEGSSATFRCRISPANY--EPVHWFLDKTPLH 55
Query: 209 LDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ ++D++ L + + +D G G+ SA L V
Sbjct: 56 ANEL----NEIDAQPGGYH-VLTLRQLALKDSGTIYFEA----GDQRASAALRV 100
Score = 38.1 bits (89), Expect = 6e-04
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 267 GKDLTSDGRLNIIT-VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
L ++ I GG VLT+ + DSG G A++ V + +
Sbjct: 51 KTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSV 106
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 91.3 bits (226), Expect = 4e-21
Identities = 47/315 (14%), Positives = 85/315 (26%), Gaps = 66/315 (20%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT----SWSKDGKP-------ATPNARV 112
+ V + +G V CS +W K P+ V
Sbjct: 13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72
Query: 113 TIREKEDLRF-----------LEISEVTLEDAGLYTIKVENN-YGSVEATARLEIMDP-- 158
++ R + +S + LED G+Y + G+ E+ L +M
Sbjct: 73 SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPT 132
Query: 159 RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ 218
I VL + D + C P +SW + E++
Sbjct: 133 NWIEGTQAVLRAKKG---QDDKVLVATCTSANGKPPSV-VSWETRLKGEAEYQ----EIR 184
Query: 219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV--------------DV 264
+ VI+R ++ + C V + S L V
Sbjct: 185 NPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWY 244
Query: 265 VKGKDLT------------------SDGRL-NIITVGGTSVLTIEDITGDDSGKYQVHVS 305
++ D+ +G L + ++ I +G Y +
Sbjct: 245 LQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEAT 304
Query: 306 NQHGSDSCYASVAVE 320
N G+ S V +
Sbjct: 305 NPIGTRSGQVEVNIT 319
Score = 59.8 bits (144), Expect = 2e-10
Identities = 11/87 (12%), Positives = 20/87 (22%), Gaps = 6/87 (6%)
Query: 80 GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
V+ C P W+ + + AG Y
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ-----NRTLFFKGPINYSLAGTYIC 301
Query: 139 KVENNYGSVEATARLEIMDPRAIISRP 165
+ N G+ + I + A+
Sbjct: 302 EATNPIGTRSGQVEVNITEAAALEHHH 328
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 86.0 bits (213), Expect = 4e-21
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-ATPNARVTIREKEDLRFLE 124
P P N+ + T C TG P P W KDG +T ++R+ E L+
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ--- 65
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK 166
I L D G YT G +A +E+ + + P+
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPR 107
Score = 64.4 bits (157), Expect = 3e-13
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P + G N + C P I W ++ L+ ++ EN
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPV--PTILWRKDGVLVSTQDS-----RIKQLEN 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
L+I + D G +TC + GE SA + V
Sbjct: 62 ---GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE 98
Score = 43.2 bits (102), Expect = 1e-05
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
G +++ G L I D+G+Y S G + A + V+ +
Sbjct: 46 GVLVSTQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP 102
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 85.5 bits (212), Expect = 4e-21
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
+S + ++ +LG + +C ++ W+K+G P + R+ + +K +
Sbjct: 5 SSGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGRIHK 62
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
L I+ ED G Y + +V A++ ++
Sbjct: 63 LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96
Score = 70.4 bits (173), Expect = 1e-15
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
K+L L + G + +C++ P W +N ++ +K V +
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISENIP----GKWTKNGLPVQESDRLK--VVQKGR-- 59
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
I +L I + EDEG++ + V A + V
Sbjct: 60 --IHKLVIANALTEDEGDYVFA--PDAYNVTLPAKVHVIS 95
Score = 45.8 bits (109), Expect = 7e-07
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
G + RL ++ G L I + +D G Y + + V
Sbjct: 43 GLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHV 93
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 85.1 bits (211), Expect = 4e-21
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
SS + + GD ++ +C + +W +DG + R I +E +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE----V 56
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
E+ + D+GLY + GS + + D A+ S P
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSD--ALPSGP 96
Score = 61.6 bits (150), Expect = 2e-12
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
S +E+ GD + C+++ + I+W R+ + + + +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDVQS---INWLRDGVQLAESNRTRITGEE--- 55
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+++ P D G + C ++ G T + V
Sbjct: 56 -------VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
Score = 45.8 bits (109), Expect = 7e-07
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
G L R I + ++D DSG Y S+ GSD+ Y SV V
Sbjct: 40 GVQLAESNRTRI----TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 85.1 bits (211), Expect = 5e-21
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
+ + F+C V+ + W K+G P+ R+TI L I
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVI 67
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
+V ED G YT + ++ +A+L ++ + +S P
Sbjct: 68 DDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIK--VSGP 103
Score = 73.2 bits (180), Expect = 2e-16
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 164 RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKE 223
+ +VL + +L + F+C+V W++N ++ +
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKV---TGKWYKNGVEVRPSKRITISHVGR--- 61
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
+L I V PEDEG++T SA L +K
Sbjct: 62 ---FHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIK 99
Score = 45.8 bits (109), Expect = 1e-06
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIE 290
V ++ F C V++E K G ++ R+ I VG L I+
Sbjct: 20 VKAAEQAVFKCEVSDEKVTG-----------KWYKNGVEVRPSKRITISHVGRFHKLVID 68
Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
D+ +D G Y S A + K+
Sbjct: 69 DVRPEDEGDYTFVPDGYAL--SLSAKLNFLEIKVS 101
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 87.5 bits (216), Expect = 1e-20
Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 12/177 (6%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
+GD+V CS TG +P+ SW + + L ++ V+ + Y
Sbjct: 15 IGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLC 71
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-D 197
+E ++EI G +T +C V V P D +
Sbjct: 72 TATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEA------GKPITVKCSVADVYPFDRLE 125
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254
I + + L + S E + V + CR + E+
Sbjct: 126 IDLLKGDHL--MKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM 180
Score = 39.4 bits (91), Expect = 7e-04
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
GDSV+ C SW +DS + +V + + L + V
Sbjct: 16 GDSVSLTCSTTGCES--PFFSWRTQ-----IDSPLNGKVTNEG----TTSTLTMNPVSFG 64
Query: 239 DEGEFTCRVANELGEVVTSACLIVDVVK 266
+E + C E ++ + +
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEIYSFP 92
Score = 37.1 bits (85), Expect = 0.004
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 15/99 (15%)
Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDV-------VKGKDLTSDGRLNIITVGGTSV 286
PE R ++G+ V+ C D +G+ + G TS
Sbjct: 4 ETTPES------RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK--VTNEGTTST 55
Query: 287 LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
LT+ ++ + Y + + V +
Sbjct: 56 LTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKD 94
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 86.5 bits (214), Expect = 1e-20
Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 36/186 (19%)
Query: 80 GDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
G+ V C+ T W +G + L I ED+G Y
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS----------LNIVNAKFEDSGEYKC 68
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
+ + S + S V+ +G + C + +
Sbjct: 69 QHQQVNESEPVYLEVFSDWLLLQASAEVVM---------EGQPLFLRCHGWRNWDV-YKV 118
Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
++++ +K + + I + ED G + C + S
Sbjct: 119 IYYKDGEALKYWYEN--------------HNISITNATVEDSGTYYCTGKVWQLD-YESE 163
Query: 259 CLIVDV 264
L + V
Sbjct: 164 PLNITV 169
Score = 57.6 bits (139), Expect = 3e-10
Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 45/161 (27%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G++VT C WF N L + + L I + E
Sbjct: 19 GENVTLTCNGNNFFE-VSSTKWFHNGSLSEETNS----------------SLNIVNAKFE 61
Query: 239 DEGEFTCRVANELGE-----VVTSACLIVD-----VVKGKDLT----------------- 271
D GE+ C+ V S L++ V++G+ L
Sbjct: 62 DSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 272 SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
DG + ++I + T +DSG Y
Sbjct: 122 KDGEA-LKYWYENHNISITNATVEDSGTYYCTGKVWQLDYE 161
Score = 49.5 bits (118), Expect = 2e-07
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 80 GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
G + +C + + KDG+ ++ + + I+ T+ED+G Y
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYKDGEA--------LKYWYENHNISITNATVEDSGTYYC 151
Query: 139 KVENNYGSVE-ATARLEIMDP 158
+ E + ++
Sbjct: 152 TGKVWQLDYESEPLNITVIKA 172
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 84.0 bits (208), Expect = 2e-20
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-ATPNARVTIREKEDLRFLE 124
P P N+ + T +C TG P P SW K+G + R TI+E+ L+
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ--- 65
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
I + + D G YT ++ G +A L++ +
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 65.5 bits (160), Expect = 7e-14
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P +L G N + +C+ P ISW + P + +
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPL--PVISWLKEGFTFPGRD---PRATIQEQGT 63
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L I + D G +TC + GE SA L V
Sbjct: 64 LQIKN-----LRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 41.6 bits (98), Expect = 3e-05
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
G T+ L I+++ D+G Y ++ G S A + V
Sbjct: 46 GFTFPGRDP--RATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 87.8 bits (217), Expect = 3e-20
Identities = 36/287 (12%), Positives = 74/287 (25%), Gaps = 72/287 (25%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
T CS + W + + P ++ L ++ +T D G Y
Sbjct: 15 SSTFVLTCSGSAP----VVWERMSQE-PPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCT 69
Query: 140 VENNYGSVEATAR---LEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
++ G + + + DP L + +T C+V
Sbjct: 70 HNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLT--EITEITIPCRVTDPQLV-- 125
Query: 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256
++ D+ V D + ++ + C+ EV +
Sbjct: 126 -VTLHEK------KGDVALPVPYDHQRGFSG---------IFEDRSYICKTTIGDREVDS 169
Query: 257 SACLIV----------------DVVKGKDLT----------------------------S 272
A + V +G+++T
Sbjct: 170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229
Query: 273 DGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
L + S+L I +DSG Y +V+ ++ +
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 82.4 bits (203), Expect = 3e-18
Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 16/186 (8%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
+ C VT T K G A P + + + Y K
Sbjct: 110 ITEITIPCRVTDPQLVVTLHEKKGDVALPV----------PYDHQRGFSGIFEDRSYICK 159
Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDIS 199
V++ A R +S V G+++T C V +
Sbjct: 160 TTIGDREVDSDAYYVY---RLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV--VNFE 214
Query: 200 WFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSAC 259
W + + + +D + + L IP ED G +TC V + +
Sbjct: 215 WTYPRKESGRLVEPVTDFLLDM-PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKA 273
Query: 260 LIVDVV 265
+ + VV
Sbjct: 274 INITVV 279
Score = 63.2 bits (153), Expect = 1e-11
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
SS + G+ + C V G W+ K + D+ +
Sbjct: 180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH 239
Query: 123 ----LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
L I LED+G YT V + + + I
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 82.4 bits (204), Expect = 5e-20
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
RF + G +C ++ AP W P + ++R++ + L +
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
+ +D+G Y+ G +A L + + S
Sbjct: 68 RNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGPS 101
Score = 74.7 bits (184), Expect = 4e-17
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
+ L++L +G + T C + V + W N +++ ++ +
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAA---PVKWCYGNNVLRPGDKYS--LRQEGA-- 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
+ L + ++ P+D G ++C G+ TSA L V
Sbjct: 62 --MLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94
Score = 43.1 bits (102), Expect = 7e-06
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 22/90 (24%)
Query: 240 EGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDI 292
EG C +++ V K L + ++ G L + ++
Sbjct: 22 EGGAATLRCVLSSVAAPV-----------KWCYGNNVLRPGDKYSLRQEGAMLELVVRNL 70
Query: 293 TGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
DSG+Y G + A++ V
Sbjct: 71 RPQDSGRYSCSF----GDQTTSATLTVTAL 96
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 84.5 bits (209), Expect = 6e-20
Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 38/187 (20%)
Query: 80 GDTVRFQCSVTGQPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
D+V C P + W +G + + + + D+G YT
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSY----------RFKANNNDSGEYTC 68
Query: 139 KVENNYGSVEATARLEIM-DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
+ S L ++ + + + +G+++ C P
Sbjct: 69 QTGQTSLS--DPVHLTVLFEWLVLQTPHLEFQ--------EGETIMLRCHSWKDKPL-VK 117
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
+++F+N + K IP G++ C +S
Sbjct: 118 VTFFQNGKSQKFSHLD--------------PTFSIPQANHSHSGDYHCTGNIGYTL-FSS 162
Query: 258 ACLIVDV 264
+ + V
Sbjct: 163 KPVTITV 169
Score = 59.4 bits (144), Expect = 5e-11
Identities = 36/186 (19%), Positives = 52/186 (27%), Gaps = 58/186 (31%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
P+A++ P +N L+ DSVT CQ P +D I WF N LI +
Sbjct: 3 PKAVLKLEPPWINVLQ------EDSVTLTCQGARSPESDS-IQWFHNGNLIPTHTQ---- 51
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL------------------------- 251
D GE+TC+
Sbjct: 52 ------------PSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQE 99
Query: 252 GEVVTSACLIVDVVKGKDLTS-----DGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSN 306
GE + C K K L +G+ + +I SG Y +
Sbjct: 100 GETIMLRC---HSWKDKPLVKVTFFQNGK-SQKFSHLDPTFSIPQANHSHSGDYHCTGNI 155
Query: 307 QHGSDS 312
+ S
Sbjct: 156 GYTLFS 161
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 84.4 bits (208), Expect = 1e-19
Identities = 30/212 (14%), Positives = 56/212 (26%), Gaps = 43/212 (20%)
Query: 79 LGDTVRFQCSVTGQPAPWT----SWSKDGKPATPNARVTIREKEDLRF------------ 122
G+T C T P W +V I D +
Sbjct: 14 KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH 73
Query: 123 ------------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNG 170
+ ++ + L D G Y KV+ G L ++ P
Sbjct: 74 FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK------PSGTRC 127
Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
+ G+ +C+ + W + + + + E+ +
Sbjct: 128 FVDGSEEIGNDFKLKCEPKEGSLPLQ-FEWQKLSDSQTMPTPWLAEMTSPV--------I 178
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ + E G ++C V N +G L V
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 69.3 bits (169), Expect = 4e-14
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
P + ++G+ + +C G W K T + +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--IS 179
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ + E +G Y+ V+N GS + RL+++ P
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
Score = 68.9 bits (168), Expect = 5e-14
Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 55/196 (28%)
Query: 179 GDSVTFECQVQ--VVPPNDHDISWFRNNR---------LIKLDSDMKPEVQVDSKENLVI 227
G++ C+ DI W + ++ + D K +
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 228 AR---------LKIPHVYPEDEGEFTCRVANELGEVVTSACLIV-------------DVV 265
+ + ++ D G + C+V G L V
Sbjct: 75 TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEE 134
Query: 266 KGKDLT------------------SDGRLNI----ITVGGTSVLTIEDITGDDSGKYQVH 303
G D + + + V+++++ + + SG Y
Sbjct: 135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCT 194
Query: 304 VSNQHGSDSCYASVAV 319
V N+ GSD C + V
Sbjct: 195 VQNRVGSDQCMLRLDV 210
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 84.1 bits (208), Expect = 2e-19
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 6/120 (5%)
Query: 54 NSAIRTRRLTSSPRFYA----VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--AT 107
+A + + YA P G+ V C V P+ SW +DG+ ++
Sbjct: 3 YAAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSS 62
Query: 108 PNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV 167
+ + I +LE++ + D G Y N G L D + S +V
Sbjct: 63 NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV 122
Score = 66.4 bits (162), Expect = 5e-13
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 19/129 (14%)
Query: 134 GLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPP 193
Y ++ P A+ + G+ V C+V P
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPVAVYTWE-------------GNQVNITCEVFAYPS 47
Query: 194 NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253
ISWFR+ +L+ + ++ + L++ D G + C N +G+
Sbjct: 48 AT--ISWFRDGQLLPSSNYSNIKIYNTPSA----SYLEVTPDSENDFGNYNCTAVNRIGQ 101
Query: 254 VVTSACLIV 262
L+
Sbjct: 102 ESLEFILVQ 110
Score = 50.2 bits (120), Expect = 1e-07
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 267 GKDLTSDG--RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
G+ L S + I S L + + +D G Y N+ G +S +
Sbjct: 56 GQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 80.4 bits (199), Expect = 3e-19
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
++ G+ V +C ++ P W KD K + + + + + L I
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+L+DAG YT +VE + + + P
Sbjct: 68 RGASLKDAGEYTCEVEASKSTASLHVEEKASGP 100
Score = 68.5 bits (168), Expect = 8e-15
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
++ LE+ G+ V C++ + W ++ + I+ V +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGT---PVHWLKDRKAIRKSQK----YDVVCEGT 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
+ A L I +D GE+TC V +A L V+
Sbjct: 62 M--AMLVIRGASLKDAGEYTCEVEASKS----TASLHVEE 95
Score = 46.9 bits (112), Expect = 3e-07
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIE 290
V P ++ E C ++ V K + + +++ G ++L I
Sbjct: 20 VAPGEDVELRCELSRAGTPV-----------HWLKDRKAIRKSQKYDVVCEGTMAMLVIR 68
Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+ D+G+Y V + AS+ VE +
Sbjct: 69 GASLKDAGEYTCEVEASKST----ASLHVEEK 96
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 82.6 bits (204), Expect = 3e-19
Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 36/186 (19%)
Query: 80 GDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
D+V +C P T W + + A I T+ D+G Y
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS----------YFIDAATVNDSGEYRC 71
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
+ + S +LE+ ++ P+ + + D + C H +
Sbjct: 72 QTNLSTLS--DPVQLEVHIGWLLLQAPRWVFK-------EEDPIHLRCHSWKNTAL-HKV 121
Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
++ +N + K + IP +D G + CR V+S
Sbjct: 122 TYLQNGKDRKYFHH--------------NSDFHIPKATLKDSGSYFCRGLVGSKN-VSSE 166
Query: 259 CLIVDV 264
+ + +
Sbjct: 167 TVNITI 172
Score = 56.0 bits (135), Expect = 8e-10
Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 58/186 (31%)
Query: 158 PRAIIS-RPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
P+A++ P+ + LE DSVT +CQ P D+ WF N LI +
Sbjct: 6 PKAVVFLEPQWYSVLE------KDSVTLKCQGAYSPE-DNSTQWFHNESLISSQAS---- 54
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL------------------------- 251
I D GE+ C+
Sbjct: 55 ------------SYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE 102
Query: 252 GEVVTSACLIVDVVKGKDLTS-----DGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSN 306
+ + C K L +G+ + S I T DSG Y
Sbjct: 103 EDPIHLRC---HSWKNTALHKVTYLQNGK-DRKYFHHNSDFHIPKATLKDSGSYFCRGLV 158
Query: 307 QHGSDS 312
+ S
Sbjct: 159 GSKNVS 164
Score = 28.7 bits (64), Expect = 2.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 284 TSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
S I+ T +DSG+Y+ + SD V
Sbjct: 53 ASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEV 86
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 82.7 bits (204), Expect = 3e-19
Identities = 26/200 (13%), Positives = 52/200 (26%), Gaps = 49/200 (24%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----------------- 122
GDTV C+ + + + W + + + K +
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
L I + +ED+ Y +VE+ V+ + + G S+
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLL--------------QGQSL 115
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
T + + L + + +D G
Sbjct: 116 TLTLESPPGSS--PSVQCRSPRGKNIQGGK----------------TLSVSQLELQDSGT 157
Query: 243 FTCRVANELGEVVTSACLIV 262
+TC V +V ++V
Sbjct: 158 WTCTVLQNQKKVEFKIDIVV 177
Score = 72.7 bits (178), Expect = 2e-15
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 31/172 (18%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI----------- 227
GD+V C W +N++ L + + SK N
Sbjct: 10 GDTVELTCTASQKKS--IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI-----VDVVKGKDLT----SDG---- 274
L I ++ ED + C V ++ EV + +++G+ LT S
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 127
Query: 275 -----RLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
+ G L++ + DSG + V + V
Sbjct: 128 SVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179
Score = 61.5 bits (149), Expect = 1e-11
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
+ G ++ +P + L +S++ L
Sbjct: 103 ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLEL 152
Query: 131 EDAGLYTIKVENNYGSVEATARLEIM 156
+D+G +T V N VE + ++
Sbjct: 153 QDSGTWTCTVLQNQKKVEFKIDIVVL 178
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 80.8 bits (199), Expect = 6e-19
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 13/120 (10%)
Query: 54 NSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVT 113
+S+ R + F P ++ +G +V C G P P W +G+
Sbjct: 10 HSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69
Query: 114 IREKEDLRF-------------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRA 160
R + I + ED G Y + N+ T + RA
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRA 129
Score = 70.8 bits (173), Expect = 3e-15
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 11/112 (9%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPE----- 216
+ + + G SV C+ P P +I W+ + +
Sbjct: 20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVP---EIQWWFEGQGPNDICSQLWDGARLD 76
Query: 217 --VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
+ + + I + ED G + CR +N+ + V V+
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVR 128
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 83.0 bits (204), Expect = 1e-18
Identities = 33/239 (13%), Positives = 56/239 (23%), Gaps = 56/239 (23%)
Query: 79 LGDTVRFQCSVT---GQPAPWTSWSKDGKPATPNARVTIREKEDLRF------------- 122
G TV CS P SW K P
Sbjct: 16 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 75
Query: 123 ----------------LEISEVTLEDAGLYTIKVEN-----NYGSVEATARLEIMDPRAI 161
L ++ V +D G Y +V +G + L++
Sbjct: 76 GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP- 134
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI-------------- 207
S ++ E ++ +G+ +T C + ++W+
Sbjct: 135 -SNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN--VTWYTGPTFFENYETGTYQPLANK 191
Query: 208 -KLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
+ L I D G C +A GE+ + V
Sbjct: 192 NQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
Score = 62.2 bits (150), Expect = 2e-11
Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 21/115 (18%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
S+ + D G+ + C T +W T + +
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 123 --------------------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
L I + DAG ++ G ++A I+
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 85.7 bits (212), Expect = 1e-18
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
PRF P+ G + F C V P +W KD + + + R + L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+ V +D G YT++ +N+YG+ E L +
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 59.1 bits (143), Expect = 5e-10
Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 211 SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDL 270
S + I + V F CRV VVT ++L
Sbjct: 470 SIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHK------DDREL 523
Query: 271 TSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
+ G LTI + GDD G+Y V N +G+ + V
Sbjct: 524 KQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 78.9 bits (195), Expect = 1e-18
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
+F N+ G T +C ++ W K + R ++R+ L+I
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELSKMAPV--EWWKGHETLRDGDRHSLRQDGARCELQI 77
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
+ EDAG Y G +A L + + S
Sbjct: 78 RGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111
Score = 76.2 bits (188), Expect = 1e-17
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF 201
++ S +A L + + L N +G + C++ + P + W+
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEG-----LRNEEATEGATAVLRCELSKMAP----VEWW 52
Query: 202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261
+ + ++ ++ D L+I + ED GE+ C G+ TSA L
Sbjct: 53 KGHETLRDGDRHS--LRQDGA----RCELQIRGLVAEDAGEYLCMC----GKERTSAMLT 102
Query: 262 VDV 264
V
Sbjct: 103 VRA 105
Score = 42.7 bits (101), Expect = 1e-05
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+ L R ++ G L I + +D+G+Y G + A + V
Sbjct: 55 HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 82.6 bits (203), Expect = 2e-18
Identities = 33/244 (13%), Positives = 65/244 (26%), Gaps = 51/244 (20%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVT---GQPAPWTSWSKDGKPATPNARVTI--- 114
R P +G++V C V + W + V
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 115 -------REKEDLRF----------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
R + L + +V D G+YT ++ S+ +E+
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV 120
Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRLIKLDSDM--- 213
+V GD+ C +Q ++W ++ + +
Sbjct: 121 LPEEPRDLRVRV---------GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSY 171
Query: 214 ---------------KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
+ V + + +K+ V D+G +TC + E +
Sbjct: 172 DSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTI 231
Query: 259 CLIV 262
L V
Sbjct: 232 VLHV 235
Score = 47.9 bits (113), Expect = 1e-06
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 179 GDSVTFECQVQVVPPNDH-DISWFRN--------------NRLIKLDSDMKPEVQVDSKE 223
G+SV C VQ + W + + L + +
Sbjct: 20 GESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDT 79
Query: 224 NLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
L + V DEG +TC + + +V + + V+
Sbjct: 80 FHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP 122
Score = 47.2 bits (111), Expect = 3e-06
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 27/121 (22%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWT---SWSKDGKPATPNARV--------TIREKEDL 120
P + +GDT + +CS+ +W T V + + +
Sbjct: 125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLG 184
Query: 121 RF----------------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISR 164
RF +++ V D G+YT + T L ++ +
Sbjct: 185 RFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTI 244
Query: 165 P 165
Sbjct: 245 S 245
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 78.2 bits (193), Expect = 2e-18
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
G++ F+C ++ + W+ GK ++R + L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
+ E DAG V + + A L + + S
Sbjct: 69 VREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPSS 103
Score = 72.4 bits (178), Expect = 3e-16
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
+ L+ + +G+S +FEC + +D W + + S Q +
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASD-PAMWTVGGKTVGSSSR----FQATRQGR 63
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKG 267
L + P D GE V + + A LIV G
Sbjct: 64 --KYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSG 100
Score = 42.8 bits (101), Expect = 1e-05
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
GK + S R G +L + + D+G+ V + AS+ V R
Sbjct: 47 GKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRER 98
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 84.7 bits (208), Expect = 3e-18
Identities = 41/306 (13%), Positives = 74/306 (24%), Gaps = 65/306 (21%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATP-NARVTIREKEDLRF--LEISEVTLEDAGLY 136
+ +F C + + GK A R+ + ++ + I+ + EDAG Y
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305
Query: 137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
++ E + + + ++ G SV C
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLF--VNEESTIPRSPTVVKGVAGSSVAVLCPYNRKES-KS 362
Query: 197 DISWFRNNRLIKLDSDM----KPEVQVDSKENLVIAR--------LKIPHVYPEDEGEFT 244
W + + V+ + L + + + + D G +
Sbjct: 363 IKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422
Query: 245 CRVAN---------------------------ELGEVVTSACLIVDVVKG---------- 267
C LGE + C
Sbjct: 423 CLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN 482
Query: 268 -------KDLTSDGRLNIIT--VGGTSVLTIEDITGDDSGKYQVHVSNQHGSD-SCYASV 317
+ + LT+ +T D G Y V H + V
Sbjct: 483 TGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542
Query: 318 AVEGRK 323
AVE RK
Sbjct: 543 AVEERK 548
Score = 72.7 bits (177), Expect = 2e-14
Identities = 35/312 (11%), Positives = 85/312 (27%), Gaps = 82/312 (26%)
Query: 80 GDTVRFQCSV---TGQPAPWTSWSKDGKP--------------ATPNARVTIREKEDLRF 122
G++V C + W + G + R + +
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 123 --LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGD 180
+ I++++ +D+G Y + N + LE+ +++ KV
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLG------R 128
Query: 181 SVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI---------ARLK 231
+VT C + + + L D V + + + +
Sbjct: 129 TVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVV 188
Query: 232 IPHVYPEDEGEFTCRVANELGEVVTSA--------------------------------- 258
I + D G++ C+ ++ +A
Sbjct: 189 INQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANV 248
Query: 259 ----C---------LIVDVVKGKDLTSDGRLNIITVG--GTSVLTIEDITGDDSGKYQVH 303
C ++V+ + + +GR+ + G+ + I + +D+G+Y
Sbjct: 249 AKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCG 308
Query: 304 VSNQHGSDSCYA 315
+
Sbjct: 309 AHSDGQLQEGSP 320
Score = 72.7 bits (177), Expect = 2e-14
Identities = 47/341 (13%), Positives = 95/341 (27%), Gaps = 84/341 (24%)
Query: 54 NSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATP--- 108
S + ++ P DLG TV C + A + + + G
Sbjct: 101 LSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVID 160
Query: 109 -----------NARVTIREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
R+ I+ L F + I+++ L DAG Y + ++ S + A L+++
Sbjct: 161 SSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220
Query: 157 DPRAIISRPKVLNGL---ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM 213
P + + + L + F C+ D+ K
Sbjct: 221 KPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGEN--CDVVVNTLG---KRAPAF 275
Query: 214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI------------ 261
+ + ++ ++ + I + ED G + C ++ S
Sbjct: 276 EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIP 335
Query: 262 -----VDVVKGKDLT----------------------------------------SDGRL 276
V V G + +GRL
Sbjct: 336 RSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL 395
Query: 277 NII--TVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYA 315
+++ GT + + +T D+G Y + +
Sbjct: 396 SLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE 436
Score = 56.9 bits (136), Expect = 3e-09
Identities = 28/225 (12%), Positives = 55/225 (24%), Gaps = 70/225 (31%)
Query: 159 RAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN-DHDISWFRNNRLIKLD------- 210
++ I P+ +N +E G+SV+ C N W R
Sbjct: 1 KSPIFGPEEVNSVE------GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEG 54
Query: 211 ---SDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA--------- 258
S + + + I + +D G + C + +
Sbjct: 55 YVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPG 114
Query: 259 -----------------------------------------CLIVDVVKGKDLTSDGRLN 277
L++D + GR+
Sbjct: 115 LLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR 174
Query: 278 IITVG---GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
+ G + I + D+G+Y + S+ A + V
Sbjct: 175 LDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV 219
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 77.8 bits (192), Expect = 3e-18
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
RF K G T QC ++ W K + R ++++ L+I
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRP 165
++++ DAG Y+ G +A L + A +
Sbjct: 67 HDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEG 102
Score = 68.2 bits (167), Expect = 1e-14
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
+ L+ +G + T +C++ V P + W + ++ ++ D
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYS--LKQDGT-- 60
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
L+I + D GE++C G+ TSA L V +
Sbjct: 61 --RCELQIHDLSVADAGEYSCMC----GQERTSATLTVRAL 95
Score = 43.5 bits (103), Expect = 6e-06
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+ L GR ++ G L I D++ D+G+Y G + A++ V
Sbjct: 44 PETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC----GQERTSATLTVRAL 95
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 77.1 bits (190), Expect = 4e-18
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF 122
+ + GD ++ +C + +W +DG + R I
Sbjct: 7 AQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG----EE 61
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+E+ + D+GLY + GS + +
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 57.9 bits (140), Expect = 4e-11
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 19/109 (17%)
Query: 154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM 213
E P + + L GD + C+++ + I+W R+ + +
Sbjct: 5 EQAQPWGVPVEVESLLVHP------GDLLQLRCRLRDDVQS---INWLRDGVQLVESNRT 55
Query: 214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ + +++ P D G + C ++ G T + V
Sbjct: 56 R----------ITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 44.0 bits (104), Expect = 3e-06
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
G L R I + + D DSG Y S+ GSD+ Y SV V
Sbjct: 46 GVQLVESNRTRI----TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 77.9 bits (192), Expect = 4e-18
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 85 FQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----LEISEVTLEDAGLYTIKV 140
+ V G P P W +G+P + + + ++ L ++ T + G YT+
Sbjct: 25 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 84
Query: 141 ENNYGSVEATARLEIMDPRAIISRPK 166
+N G+ T + +
Sbjct: 85 KNPLGTANQTINGHFLKEPFPVDEVS 110
Score = 59.1 bits (143), Expect = 2e-11
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Query: 181 SVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
E V+ P P + W N + ++ + V+ + + L +
Sbjct: 22 EHCIEFVVRGNPPPT---LHWLHNGQPLRESKIIH--VEYYQEGEISEGCLLFNKPTHYN 76
Query: 240 EGEFTCRVANELGEVVTSACLIVDV 264
G +T N LG +
Sbjct: 77 NGNYTLIAKNPLGTANQTINGHFLK 101
Score = 46.0 bits (109), Expect = 1e-06
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 267 GKDLTSDGRLNIITVGGTSV----LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
G+ L +++ + L T ++G Y + N G+ + +
Sbjct: 43 GQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 77.1 bits (190), Expect = 5e-18
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
+ P G TV C V QP+P W KDG P L
Sbjct: 9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV---------L 59
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+ E+ +D G Y+ ++ + + + I
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 68.2 bits (167), Expect = 9e-15
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
+ +++ E G +VT C+V P I W ++ + L
Sbjct: 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQ--IHWMKDGVPLPLPPS--------- 56
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
L +P + P+D+G ++C + S + + +++
Sbjct: 57 ------PVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
Score = 36.2 bits (84), Expect = 0.002
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 279 ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
+ + + VL + +I D G Y ++ +V++
Sbjct: 51 LPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 77.1 bits (190), Expect = 6e-18
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIR-----EKEDLRFLEISEVTLEDAG 134
+V G P P W +G + + + E L++ T + G
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75
Query: 135 LYTIKVENNYGSVEATARLEIMDP 158
YT+ +N YG E M
Sbjct: 76 DYTLIAKNEYGKDEKQISAHFMGW 99
Score = 60.1 bits (146), Expect = 7e-12
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 179 GDSVTFECQVQVVP-PNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
V+ P P + WF N ++ + ++ V + L++ +
Sbjct: 16 DHHWCIPFTVKGNPKPA---LQWFYNGAILNESKYICTKIHVTN-HTEYHGCLQLDNPTH 71
Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
+ G++T NE G+
Sbjct: 72 MNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 46.3 bits (110), Expect = 6e-07
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 267 GKDLTSDGRLNIITVGGT-----SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
G L + L +++ T ++G Y + N++G D S G
Sbjct: 39 GAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Query: 322 R 322
Sbjct: 99 W 99
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 76.6 bits (189), Expect = 8e-18
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
F N + T F C PA +W K + + ++ L I
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
S + D+ YT + G ++ A+L + R+ S
Sbjct: 68 SALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGPS 101
Score = 72.8 bits (179), Expect = 2e-16
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
L NL+ + + F C+ + ++W + ++ + +
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKTEHPAAT---VTWRKGLLELRASGKH--QPSQEGL-- 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
RL I + D +TC + G+ + A L+V
Sbjct: 62 --TLRLTISALEKADSDTYTCDI----GQAQSRAQLLV 93
Score = 48.9 bits (117), Expect = 7e-08
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIE 290
V + FTC+ + V +L + G+ G T LTI
Sbjct: 20 VEEKGTAVFTCKTEHPAATV-----------TWRKGLLELRASGKHQPSQEGLTLRLTIS 68
Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKI 324
+ DS Y + G A + V+GR+
Sbjct: 69 ALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 75.8 bits (187), Expect = 1e-17
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
+ +G+T F+ ++ +P W G+P + I E L +
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
L G + + N ++ A L++
Sbjct: 65 HNCQLGMTGEVSFQAAN----TKSAANLKV 90
Score = 69.2 bits (170), Expect = 3e-15
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 13/98 (13%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
+V L + G++ FE ++ + W + + D + + D K
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELSEPDVH---GQWKLKGQPLAASPDCE--IIEDGK-- 58
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L + + GE + + ++A L V
Sbjct: 59 --KHILILHNCQLGMTGEVSFQA----ANTKSAANLKV 90
Score = 44.2 bits (105), Expect = 3e-06
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 16/77 (20%)
Query: 240 EGE---FTCRVANELGEVVTSACLIVDVV---KGKDLTSDGRLNIITVGGTSVLTIEDIT 293
GE F ++ V KG+ L + II G +L + +
Sbjct: 19 VGETAHFEIELSEPD----------VHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQ 68
Query: 294 GDDSGKYQVHVSNQHGS 310
+G+ +N +
Sbjct: 69 LGMTGEVSFQAANTKSA 85
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 78.4 bits (193), Expect = 2e-17
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 36/186 (19%)
Query: 80 GDTVRFQCSVTGQPAPW-TSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
D+V +C P T W + + A I T++D+G Y
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS----------YFIDAATVDDSGEYRC 71
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
+ + + S +LE+ ++ P+ + + D + C H +
Sbjct: 72 QTQLSTLS--DPVQLEVHIGWLLLQAPRWVFK-------EEDPIHLRCHSWKNTAL-HKV 121
Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSA 258
++ +N + K + IP +D G + CR V+S
Sbjct: 122 TYLQNGKGRKYFHHN--------------SDFYIPKATLKDSGSYFCRGLVGSKN-VSSE 166
Query: 259 CLIVDV 264
+ + +
Sbjct: 167 TVQITI 172
Score = 53.0 bits (127), Expect = 2e-08
Identities = 28/161 (17%), Positives = 41/161 (25%), Gaps = 45/161 (27%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
DSVT +CQ P + WF N LI + I +
Sbjct: 22 KDSVTLKCQGAYSPED-QSTQWFHNESLISSQAS----------------SYFIDAATVD 64
Query: 239 DEGEFTCRVANELGE-----VVTSACLIVD-----VVKGKDLT----------------- 271
D GE+ C+ V L++ + +
Sbjct: 65 DSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 272 SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
+G+ S I T DSG Y + S
Sbjct: 125 QNGK-GRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVS 164
Score = 27.2 bits (60), Expect = 6.7
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
S I+ T DDSG+Y+ SD V
Sbjct: 51 SQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEV 86
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 75.1 bits (185), Expect = 3e-17
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
V LE+ G+ V EC+V N + WF+N I + ++V+ K
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSEDDAN---VKWFKNGEEIIPGPKSRYRIRVEGK-- 62
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
L I D E++ +SA L VD+
Sbjct: 63 --KHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDL 96
Score = 69.3 bits (170), Expect = 4e-15
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP--ATPNARVTIREKEDL 120
+S + G+ V +C V+ W K+G+ P +R IR +
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
L I T DA Y++ +++A+L + S
Sbjct: 64 HILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKSGPSS 102
Score = 41.9 bits (99), Expect = 2e-05
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 24/92 (26%)
Query: 240 EGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTS--DGRLNIITVGGTSVLTIE 290
GE C V+ + V K G+++ R I G +L IE
Sbjct: 21 CGERVELECEVSEDDANV-----------KWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 69
Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
T D+ +Y V + S A ++V+ +
Sbjct: 70 GATKADAAEYSVMTTGGQSS----AKLSVDLK 97
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 74.0 bits (182), Expect = 6e-17
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 63 TSSPRFY-AVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR 121
+S F + D G VRF + P W K+G+ P+ + K R
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
L I+ + D Y + G + + L +
Sbjct: 64 ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSG 96
Score = 60.1 bits (146), Expect = 7e-12
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 163 SRPKVLNGLE-NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
S L+ + G V F ++ ++ W++N + I+ + +
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVELADPKL---EVKWYKNGQEIRPSTK----YIFEH 58
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
K L I + D+ E+ G+ S L V
Sbjct: 59 KGCQ--RILFINNCQMTDDSEYYVTA----GDEKCSTELFV 93
Score = 46.2 bits (110), Expect = 7e-07
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 19/90 (21%)
Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIE 290
V F +A+ EV K G+++ + G +L I
Sbjct: 20 VDKGGRVRFVVELADPKLEV-----------KWYKNGQEIRPSTKYIFEHKGCQRILFIN 68
Query: 291 DITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+ D +Y V G + C + V
Sbjct: 69 NCQMTDDSEYYVTA----GDEKCSTELFVR 94
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 73.9 bits (182), Expect = 8e-17
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 9/99 (9%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
++ LE+ + GD V +V + W +N + + K +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQ---VMWMKNGVELTREDSFKARYRFKKDGK 65
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
L V ED G + A LIV+
Sbjct: 66 R--HILIFSDVVQEDRGRYQVITNGG----QCEAELIVE 98
Score = 70.4 bits (173), Expect = 1e-15
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPN----ARVTIREKEDLR 121
++ +GD V V+ W K+G T AR ++
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR 159
L S+V ED G Y + + A L + + +
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGG----QCEAELIVEEKQ 101
Score = 44.6 bits (106), Expect = 2e-06
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 23/98 (23%)
Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVVK----GKDLTSD----GRLNIITVGGTS 285
V+ D E V+ E +V G +LT + R G
Sbjct: 19 QVFVGDRVEMAVEVSEEGAQV-----------MWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 286 VLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
+L D+ +D G+YQV + C A + VE ++
Sbjct: 68 ILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 73.5 bits (181), Expect = 9e-17
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL 123
S + P ++ G T+ QC G P P W K+ P T + +
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLY 52
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ V LE G Y V N+ S ++ I+D
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
Score = 62.7 bits (153), Expect = 6e-13
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
S+ ++ + + G ++ +C P WF+N + ++
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPI--PHYQWFKNELPLTHETKKL-------- 51
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+P+V E +G + C V N+ + I+
Sbjct: 52 -------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
Score = 40.8 bits (96), Expect = 3e-05
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 279 ITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS-DSCYASVAVE 320
+T + + + + G Y HV N S DS + ++
Sbjct: 44 LTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 76.5 bits (187), Expect = 1e-16
Identities = 30/199 (15%), Positives = 51/199 (25%), Gaps = 41/199 (20%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
+V C A +W KDGK + + + G+Y K
Sbjct: 18 DGSVLLTCDA---EAKNITWFKDGKMIGFLTEDK-------KKWNLGSNAKDPRGMYQCK 67
Query: 140 VENNYGS------------VEATARLEIMDPRAIISRPKVLNGLENLR---------CCD 178
N + D + ++ +G E +
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G +V C +I W N++ I D D K +++L + E
Sbjct: 128 GTTVILTCPQYPGS----EILWQHNDKNIGGDEDDK--NIGSDEDHLSL----KEFSELE 177
Query: 239 DEGEFTCRVANELGEVVTS 257
G + C E
Sbjct: 178 QSGYYVCYPRGSKPEDANF 196
Score = 27.2 bits (59), Expect = 7.0
Identities = 7/53 (13%), Positives = 10/53 (18%)
Query: 273 DGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRKII 325
DG++ + D G YQ S
Sbjct: 37 DGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAK 89
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 74.3 bits (182), Expect = 1e-16
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 12/108 (11%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKDGK---PATPNARVTIREK 117
S F P +G+ + F V + P W K + + ++E
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 118 EDLRF------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR 159
+ ++I + AG Y +V + LE+ +
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
Score = 65.8 bits (160), Expect = 1e-13
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRL---IKLDSDMKPEVQ 218
S + + G+ +TF +V+ I WF+ + K ++ +
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKD 269
+ + ++I G + C V + S L V G
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
Score = 48.5 bits (115), Expect = 2e-07
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
GK L + T + I + +G Y+ V+ + DSC + V
Sbjct: 57 GKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 74.2 bits (182), Expect = 1e-16
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 145 GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN 204
GS ++ L + P IIS + + L G+ +C ++ PP D I+W
Sbjct: 1 GSSGSSGTLTVNGP-PIISSTQTQHALH------GEKGQIKCFIRSTPPPDR-IAWSWKE 52
Query: 205 RLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG-EFTCRVANELGEVVTSACLIV 262
+++ + + V+ S E VI+ L I ++ D + C N G L
Sbjct: 53 NVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 65.7 bits (160), Expect = 1e-13
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWT-SWSKDGKP--ATPNARVTIREKEDLRF 122
P + + G+ + +C + P P +WS + + R T+
Sbjct: 15 PII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73
Query: 123 ----LEISEVTLED-AGLYTIKVENNYGSVEATARLEI 155
L IS + D +Y N++GS RL+
Sbjct: 74 VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 39.1 bits (91), Expect = 3e-04
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 269 DLTSDGRLNIITV----GGTSVLTIEDIT-GDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
+ + GR + T+ G S LTI +I D Y N GSD+ + +G +
Sbjct: 56 ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
Query: 324 I 324
+
Sbjct: 116 M 116
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 73.2 bits (180), Expect = 2e-16
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 63 TSSPRFYAVP---HNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED 119
+S P P + + V C ++ P +W KDG+ + + ++
Sbjct: 5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGR 63
Query: 120 LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
L + E ++D+G + + E V A + + DP S
Sbjct: 64 KHRLILPEAKVQDSGEFECRTEG----VSAFFGVTVQDPSGPSS 103
Score = 62.8 bits (153), Expect = 9e-13
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
I P+ +L + V C++ V +W+++ + ++ + V
Sbjct: 7 GPVHILSPQ---DKVSLTFTTSERVVLTCELSRVDF---PATWYKDGQKVEESELLV--V 58
Query: 218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
++D + RL +P +D GEF CR V + V
Sbjct: 59 KMDGR----KHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQD 97
Score = 44.3 bits (105), Expect = 3e-06
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 22/88 (25%)
Query: 240 EGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDI 292
E TC ++ G+ + L + G L + +
Sbjct: 24 TSERVVLTCELSRVDFPA-----------TWYKDGQKVEESELLVVKMDGRKHRLILPEA 72
Query: 293 TGDDSGKYQVHVSNQHGSDSCYASVAVE 320
DSG+++ S + V V+
Sbjct: 73 KVQDSGEFECRT----EGVSAFFGVTVQ 96
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 72.8 bits (179), Expect = 2e-16
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
F P + G F+ W + G + + + + + L +
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETERAGVK-VRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
EV D G Y + GS + L++
Sbjct: 68 REVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 66.2 bits (162), Expect = 4e-14
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 13/98 (13%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
++ G FE + + + W R I + + ++
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETERAGV---KVRWQRGGSDISASNK----YGLATEGT 61
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L + V P D+G + G L V
Sbjct: 62 R--HTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 45.8 bits (109), Expect = 8e-07
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 22/88 (25%)
Query: 240 EGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDI 292
G F +V + G D+++ + + T G LT+ ++
Sbjct: 22 AGSPAVFEAETERAGVKV-----------RWQRGGSDISASNKYGLATEGTRHTLTVREV 70
Query: 293 TGDDSGKYQVHVSNQHGSDSCYASVAVE 320
D G Y V GS + V
Sbjct: 71 GPADQGSYAVIA----GSSKVKFDLKVI 94
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 73.8 bits (181), Expect = 7e-16
Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 43/195 (22%)
Query: 79 LGDTVRFQC--SVTGQPAPWTSWSKDGKPAT----PNARVTIREKEDLRF-----LEISE 127
LG + W K + T +EK+ + L+I
Sbjct: 13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKH 72
Query: 128 VTLEDAGLYTIKVENNYGSVEATA--RLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFE 185
+ +D +Y + + + G L+I + +S+PK+ + T
Sbjct: 73 LKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER---VSKPKIS--------WTCINTTLT 121
Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
C+V +++ +++ + +KL R+ +F C
Sbjct: 122 CEVMNGTDP--ELNLYQDGKHLKLSQ-----------------RVITHKWTTSLSAKFKC 162
Query: 246 RVANELGEVVTSACL 260
N++ + + +
Sbjct: 163 TAGNKVSKESSVEPV 177
Score = 62.6 bits (152), Expect = 5e-12
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 33/173 (19%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI---ARLKIPHV 235
G + + + + DI W + + K+ K + K+ + LKI H+
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 236 YPEDEGEFTCRVANELGEVVTSACLIVDV----------VKGKDLTSDGRLNIITVGGTS 285
+D+ + + + G+ V + + + T L + GT
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTT----LTCEVMNGTD 129
Query: 286 V----------------LTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+ T S K++ N+ +S V+ +
Sbjct: 130 PELNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 46.8 bits (111), Expect = 2e-06
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 11/75 (14%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
C V P + +DGK + RV + T + +
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVI-----------THKWTTSLSAKFKCT 163
Query: 140 VENNYGSVEATARLE 154
N + +
Sbjct: 164 AGNKVSKESSVEPVS 178
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 70.9 bits (174), Expect = 1e-15
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
+ + G + C V +W KDGK + +++V + R L +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 126 SEVTLEDAGLYTIKVENNYGSVEATARLEI 155
+ +AG Y+ + G + + RL++
Sbjct: 71 QQAGQAEAGEYSCEA----GGQQLSFRLQV 96
Score = 65.5 bits (160), Expect = 9e-14
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
K ++ G S T C+V +++W+++ + + S ++ V+
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQAQT---EVTWYKDGKKLSSSSKVR--VEAVGC-- 64
Query: 225 LVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
RL + + GE++C G S L V
Sbjct: 65 --TRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQV 96
Score = 49.7 bits (119), Expect = 4e-08
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 19/85 (22%)
Query: 242 EFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDITGDDS 297
+C VA EV GK L+S ++ + VG T L ++ ++
Sbjct: 30 TLSCEVAQAQTEV-----------TWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEA 78
Query: 298 GKYQVHVSNQHGSDSCYASVAVEGR 322
G+Y G + V G+
Sbjct: 79 GEYSCEA----GGQQLSFRLQVAGQ 99
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 72.0 bits (176), Expect = 3e-15
Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 26/193 (13%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIRE-----KEDLRF----LEISEVT 129
+G +V +C + + N E +E L I V
Sbjct: 16 VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQ 75
Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
+ D+G Y V +++ I ++L V CQ +
Sbjct: 76 VRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID-TRILEVPG------TGEVQLTCQAR 128
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
P ++SW + ++ V + L++ P+ F+C N
Sbjct: 129 GYPL--AEVSWQNVS-----VPANTSHIRTPEGLYQVTSVLRLK---PQPSRNFSCMFWN 178
Query: 250 ELGEVVTSACLIV 262
+ +TSA +
Sbjct: 179 AHMKELTSAIIDP 191
Score = 47.3 bits (112), Expect = 1e-06
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
V+ C G P SW PA + T + + + + +
Sbjct: 110 TRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRT--PEGLYQVTSVLRLKPQ 167
Query: 132 DAGLYTIKVENNYGSVEATARLEI 155
+ ++ N + +A ++
Sbjct: 168 PSRNFSCMFWNAHMKELTSAIIDP 191
Score = 45.8 bits (108), Expect = 5e-06
Identities = 23/180 (12%), Positives = 44/180 (24%), Gaps = 38/180 (21%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE---VQVDSKENLVIARLKIPHV 235
G SV+ EC ++ R + + ++ + L A IP V
Sbjct: 17 GSSVSLECDFDRREC--TELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74
Query: 236 YPEDEGEFTCRVANELGEVVTSACLIVDVV------------------------------ 265
D G++ C V + V
Sbjct: 75 QVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAE 134
Query: 266 ---KGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGR 322
+ + ++ G V ++ + S + N H + A + R
Sbjct: 135 VSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSR 194
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 70.5 bits (172), Expect = 3e-15
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 34/126 (26%)
Query: 66 PRFYA-----VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA---------- 110
P+ + +P + G+ +R ++G PAP W K
Sbjct: 14 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 73
Query: 111 -------------------RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA 151
RV + +D + ED G+YT+ V+N G +
Sbjct: 74 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 133
Query: 152 RLEIMD 157
++++D
Sbjct: 134 TVKVID 139
Score = 57.1 bits (137), Expect = 2e-10
Identities = 21/158 (13%), Positives = 42/158 (26%), Gaps = 36/158 (22%)
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDS 221
I + + G+ + + + P + W + + +
Sbjct: 16 IHLDCPGRIPDTIVVVAGNKLRLDVPISGDPA--PTVIWQKAI---------TQGNKAPA 64
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITV 281
+ + + C ++GR+ + T
Sbjct: 65 RPAPDAPEDTGDSDEWVFDKKLLCE-------------------------TEGRVRVETT 99
Query: 282 GGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
S+ T+E +D G Y V V N G D +V V
Sbjct: 100 KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 70.0 bits (171), Expect = 4e-15
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 75 KICDLGDTVR-----FQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLR-------F 122
L V SV GQPAP W +G + + E
Sbjct: 5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
L +++ T + G YT+ N +G A+ MD
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
Score = 51.1 bits (122), Expect = 2e-08
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 198 ISWFRNNRLIKLDSDMKPEV-QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT 256
+ W N ++ S + E + + E + L++ + G +T AN G+
Sbjct: 32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91
Query: 257 SACLIV 262
S
Sbjct: 92 SIMAAF 97
Score = 39.9 bits (93), Expect = 1e-04
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 7/63 (11%)
Query: 267 GKDLTSDGRLNIITVGGT-------SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
G L + + L + T ++G Y + +N G S A
Sbjct: 38 GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
Query: 320 EGR 322
Sbjct: 98 MDN 100
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 69.8 bits (171), Expect = 4e-15
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
+ V C + +P W+KDG+ + + +++++ +R L + V LED+G Y +
Sbjct: 28 LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86
Query: 140 VENNYGSVEATARLEIMDPRAIISRP 165
+ A+ + + +P I
Sbjct: 87 I----DDESASFTVTVTEPPVRIIYS 108
Score = 60.5 bits (147), Expect = 7e-12
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 16/113 (14%)
Query: 150 TARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL 209
++ D + I P G + + V C++ ++ W ++ +
Sbjct: 2 SSGSSGTDVSSWIVYPS---GKVYVAAVRLERVVLTCELCRPWA---EVRWTKDGEEVVE 55
Query: 210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ + + + RL +P V ED GE+ C + + S + V
Sbjct: 56 SPALLLQKEDT------VRRLVLPAVQLEDSGEYLCEI----DDESASFTVTV 98
Score = 46.3 bits (110), Expect = 7e-07
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 19/87 (21%)
Query: 242 EFTCRVANELGEVVTSACLIVDVVK----GKDLTSDGRLNIITVGGTSVLTIEDITGDDS 297
TC + EV + G+++ L + L + + +DS
Sbjct: 32 VLTCELCRPWAEV-----------RWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDS 80
Query: 298 GKYQVHVSNQHGSDSCYASVAVEGRKI 324
G+Y + +S +V V +
Sbjct: 81 GEYLCEI----DDESASFTVTVTEPPV 103
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 71.6 bits (175), Expect = 6e-15
Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 33/191 (17%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----------------L 123
+ V +W K A ++ F L
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 124 EISEVTLEDAGLYTIKVEN-NYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
+T++D G+YT+ + + NY +AT R + P + + N + DSV
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP-----VTQPFLQVTNTTVKELDSV 128
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
T C + N I W N++ ++L M + ++ L+I + ED GE
Sbjct: 129 TLTCLSNDIGAN---IQWLFNSQSLQLTERMT--LSQNNSI------LRIDPIKREDAGE 177
Query: 243 FTCRVANELGE 253
+ C ++N +
Sbjct: 178 YQCEISNPVSV 188
Score = 57.4 bits (138), Expect = 6e-10
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEI 125
+ + N D+V C W + + R+T+ + + L I
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQ--NNSILRI 167
Query: 126 SEVTLEDAGLYTIKVENNYGSVEA-TARLEIMDP 158
+ EDAG Y ++ N + + +L+I+
Sbjct: 168 DPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD 201
Score = 49.3 bits (117), Expect = 3e-07
Identities = 23/183 (12%), Positives = 47/183 (25%), Gaps = 51/183 (27%)
Query: 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM--KPEVQVDSKENLVIAR----- 229
+ ++V +P +W++ N P ++ R
Sbjct: 12 AEDNNVLLLVHN--LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 230 ---LKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK-------------------- 266
L + +D G +T + +E +
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129
Query: 267 -----------------GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
+ L R+ + S+L I+ I +D+G+YQ +SN
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTERMTL--SQNNSILRIDPIKREDAGEYQCEISNPVS 187
Query: 310 SDS 312
Sbjct: 188 VRR 190
Score = 31.6 bits (71), Expect = 0.27
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 252 GEVVTSACLIVDVVKGKDLTSDGRL--NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHG 309
G I V ++ G+ + L + IT D G Y + +++++
Sbjct: 36 GNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENY 95
Query: 310 -SDSCYASVAVEGRKII 325
V
Sbjct: 96 RRTQATVRFHVHQPVTQ 112
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 67.5 bits (165), Expect = 2e-14
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKP-----ATPNARVTIREKEDL 120
PR P + I G+ C G+P P W K G+ P + + L
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 121 RFLEI--SEVTLEDAGLYTIKVENNYGS-VEATARLEI 155
FL I + D G+Y N G V A LE+
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 57.5 bits (139), Expect = 9e-11
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSD-MKPEVQVDS 221
P+++ +L G+ T C+ + P I W++ ++ D D + +
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT--IEWYKGGERVETDKDDPRSHRMLLP 65
Query: 222 KENLVIARLKIPHVYPEDEGEFTCRVANELGEVVT-SACLIVDV 264
+L R+ DEG + C N LGE V+ A L V
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 68.8 bits (168), Expect = 3e-14
Identities = 22/191 (11%), Positives = 55/191 (28%), Gaps = 37/191 (19%)
Query: 79 LGDTVRFQCSV--TGQPAPWTSWSKDGKPATPNARVTIREKEDLRF-------LEISEVT 129
LG + W + R + F L+I +T
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
+D+G Y + V + G+ L++ ++S+P + + + T C+V
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDL-RILEMVSKPMIY--------WECSNATLTCEVL 120
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
++ ++ ++ + + + + F C+ N
Sbjct: 121 EGTDV--ELKLYQGKEHLRSLR-----------------QKTMSYQWTNLRAPFKCKAVN 161
Query: 250 ELGEVVTSACL 260
+ + +
Sbjct: 162 RVSQESEMEVV 172
Score = 56.9 bits (137), Expect = 4e-10
Identities = 18/157 (11%), Positives = 46/157 (29%), Gaps = 23/157 (14%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI-ARLKIPHVYP 237
G + + + ++ W R + L+ ++ LKI ++
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 238 EDEGEFTCRVANELGEVVTSACLIV----------------------DVVKGKDLTSDGR 275
+D G + V + G + + L + +V++G D+
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLY 130
Query: 276 LNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
+ T+ + ++ N+ +S
Sbjct: 131 QGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 167
Score = 35.3 bits (81), Expect = 0.012
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 260 LIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
L+ + + I G L I+++T DDSG Y V V + +G+ ++ +
Sbjct: 38 LVAEFKRKMKPFLKSGAFEILANGD--LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL 95
Query: 320 E 320
Sbjct: 96 R 96
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 66.6 bits (163), Expect = 4e-14
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 65 SPRFYA-VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA-RVTIREKEDLRF 122
S F + G +R + A W K+G+ + + R
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVK-WLKNGQEIQMSGSKYIFESIGAKRT 73
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
L IS+ +L D Y V G + + L +
Sbjct: 74 LTISQCSLADDAAYQCVV----GGEKCSTELFV 102
Score = 63.5 bits (155), Expect = 5e-13
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 164 RPKVLNGLENL-RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
LE + G + ++ ++ W +N + I++ + +K
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVELADHDA---EVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L I D+ + C V G S L V
Sbjct: 72 -----RTLTISQCSLADDAAYQCVV----GGEKCSTELFV 102
Score = 44.7 bits (106), Expect = 3e-06
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 23/98 (23%)
Query: 231 KIPHVYPEDEGE---FTCRVANELGEVVTSACLIVDVVK----GKDLTSDG-RLNIITVG 282
K+ Y +G T +A+ EV K G+++ G + ++G
Sbjct: 21 KLEPAYQVSKGHKIRLTVELADHDAEV-----------KWLKNGQEIQMSGSKYIFESIG 69
Query: 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
LTI + D YQ V G + C + V+
Sbjct: 70 AKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 71.4 bits (174), Expect = 5e-14
Identities = 33/274 (12%), Positives = 60/274 (21%), Gaps = 59/274 (21%)
Query: 80 GDTVRFQCSVTG---QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
CS+ G + + P + VT ED G
Sbjct: 203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT---VTYGNDSFSAKASVSVTAEDEGTQ 259
Query: 137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
+ G+ + I S P L +G VT +C+
Sbjct: 260 RLTCAVILGNQSQETLQTVT----IYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK--- 312
Query: 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG--EV 254
++ A+L + ++ F+C E+ +
Sbjct: 313 -VTLNGVPAQPLGPR----------------AQLLLKATPEDNGRSFSCSATLEVAGQLI 355
Query: 255 VTSACLIVDV-VKGKDLTSDGRLNIITVGGTSV--------------------------L 287
+ + V + D N +
Sbjct: 356 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG 415
Query: 288 TIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
+T D G Y + G + +V V
Sbjct: 416 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 70.7 bits (172), Expect = 9e-14
Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 24/176 (13%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIK 139
G +V CS + TP + + + +++
Sbjct: 14 GGSVLVTCSTSCDQPMLLGIE------TPLPKKELLLPGN-NRKVYELSNVQEDSQPMCY 66
Query: 140 VENNYGSVEATARLEIMD-PRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-VVPPNDHD 197
G A L + P + P G ++T CQV+ P +
Sbjct: 67 SNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV------GKNLTLRCQVEGGAPRANLT 120
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253
+ R + +K + + +V + F+CR +L
Sbjct: 121 VVLLRGEKELKREPAVGEPAEVT---------TTVLVRRDHHGANFSCRTELDLRP 167
Score = 70.3 bits (171), Expect = 1e-13
Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 41/212 (19%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
++T + S P + G V +C + +
Sbjct: 273 ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR------ 326
Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVE----ATARLEIMDPRAIISRPKVLNG 170
L + ++ ++ T L ++ + R
Sbjct: 327 ------AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP--- 377
Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
N + T CQ P ++ ++ +
Sbjct: 378 -GNWTWPENSQQTPMCQAWGNPL--PELKCLKDG-------------------TFPLPIG 415
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ V + EG + CR + GEV + V
Sbjct: 416 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 61.8 bits (149), Expect = 7e-11
Identities = 20/98 (20%), Positives = 26/98 (26%), Gaps = 15/98 (15%)
Query: 63 TSSPRFYAV--PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
PR P N C G P P KDG P
Sbjct: 366 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------- 414
Query: 121 RFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
E VT + G Y + + G V + ++ P
Sbjct: 415 --GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 58.3 bits (140), Expect = 9e-10
Identities = 30/280 (10%), Positives = 71/280 (25%), Gaps = 41/280 (14%)
Query: 72 PHNKICDLGDTVRFQCSVTG-QPAPWT--SWSKDGKPATPNARVTIREKEDLRFLEISEV 128
P +G + +C V G P + K V + L +
Sbjct: 93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD- 151
Query: 129 TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD---GDSVTFE 185
++ + E + P + + + + T
Sbjct: 152 --HHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVV 209
Query: 186 CQVQ-VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C + + P ++ + ++ + P V + A + E T
Sbjct: 210 CSLDGLFPVSEAQVHLALGDQRLN------PTVTYGNDSFSAKASV-SVTAEDEGTQRLT 262
Query: 245 CRVANELGEVVTSACLIVD-------------VVKGKDLT----SDGRLNII-------T 280
C V T + + V +G ++T + R +
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP 322
Query: 281 VGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+G + L ++ D+ + + + + + E
Sbjct: 323 LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362
Score = 29.8 bits (66), Expect = 1.1
Identities = 16/178 (8%), Positives = 33/178 (18%), Gaps = 52/178 (29%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G SV C P I + + L + + ++ + +
Sbjct: 14 GGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQ--------------- 58
Query: 239 DEGEFTCRVANELGEVVTSACLIVD--------------VVKGKDLT------------- 271
++ + C G+ L V GK+LT
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 272 ------SDGRL----NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
+ + T+ +
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 66.2 bits (161), Expect = 5e-14
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 12/105 (11%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKDGK---PATPNARVTIREKE 118
F P + +G ++ F V G P W K + + + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 119 DLRF------LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD 157
D L I++ G Y +V + L + +
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 64.6 bits (157), Expect = 2e-13
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 157 DPRAI-ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRL---IKLDS 211
DP + + RP ++ G S+TF +V + WF+ + K+
Sbjct: 2 DPIGLFVMRP------QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQ 55
Query: 212 DMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
++ D + + L I P G + C V+ + ++ L V
Sbjct: 56 HLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 46.5 bits (110), Expect = 5e-07
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
G+ L + + L I D +G Y+ VS + D ++ V
Sbjct: 54 GQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 68.9 bits (168), Expect = 1e-13
Identities = 28/212 (13%), Positives = 55/212 (25%), Gaps = 41/212 (19%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
++T + S P + G V +C + + +G PA P
Sbjct: 88 ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRA----KVTLNGVPAQPLGPRA- 142
Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSV----EATARLEIMDPRAIISRPKVLNG 170
L + ++ ++ T L ++ + R
Sbjct: 143 -------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDC---- 191
Query: 171 LENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARL 230
N + T CQ P ++ ++ +
Sbjct: 192 PGNWTWPENSQQTPMCQAWGNPL--PELKCLKDG-------------------TFPLPIG 230
Query: 231 KIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ V + EG + CR + GEV + V
Sbjct: 231 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 67.0 bits (163), Expect = 6e-13
Identities = 32/274 (11%), Positives = 56/274 (20%), Gaps = 59/274 (21%)
Query: 80 GDTVRFQCSVTG---QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
CS+ G + + P + + E
Sbjct: 18 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-VTYGNDSFSAKASVSVTAEDEGTQRL 76
Query: 137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
T V S E + I A E G VT +C+
Sbjct: 77 TCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE------GTEVTVKCEAHPRAK--- 127
Query: 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELG--EV 254
++ A+L + ++ F+C E+ +
Sbjct: 128 -VTLNGVPAQPLGPR----------------AQLLLKATPEDNGRSFSCSATLEVAGQLI 170
Query: 255 VTSACLIVDVVKGKDLTSDGRLNIITV--GGTSVLT------------------------ 288
+ + V+ G L T
Sbjct: 171 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG 230
Query: 289 -IEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
+T D G Y + G + +V V
Sbjct: 231 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 61.6 bits (149), Expect = 4e-11
Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 13/88 (14%)
Query: 71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
P N C G P P KDG P E VT
Sbjct: 191 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------GESVTVTR 237
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDP 158
+ G Y + + G V + ++ P
Sbjct: 238 DLEGTYLCRARSTQGEVTREVTVNVLSP 265
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 64.1 bits (156), Expect = 2e-13
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 72 PHNKICDLGDTVRFQCSV-TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL 130
++ G V F C+ + PA W++ P+ R L I V
Sbjct: 17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGI----LTIRNVQP 71
Query: 131 EDAGLYTIKVENNYGSVEATARLEI 155
DAG Y N + + TA L +
Sbjct: 72 SDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 51.0 bits (122), Expect = 1e-08
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 18/107 (16%)
Query: 158 PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
+ + + G VTF C + P + W R + P
Sbjct: 10 IMVTVEEQRSQSVRP------GADVTFICTAKSKSPAYT-LVWTRL------HNGKLPSR 56
Query: 218 QVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
+D L I +V P D G + C +N +A L V V
Sbjct: 57 AMDFNGILTI-----RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 38.6 bits (90), Expect = 3e-04
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 286 VLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
+LTI ++ D+G Y SN D A++ V+
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 68.3 bits (166), Expect = 7e-13
Identities = 28/205 (13%), Positives = 59/205 (28%), Gaps = 19/205 (9%)
Query: 82 TVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE 141
+ V P W+ G P R L IS + +
Sbjct: 93 LLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE---------LAISTFWPNFYQVIFEVIT 143
Query: 142 NNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWF 201
+ + A ++++ +R ++N+ G TF+C +
Sbjct: 144 SGHQGYLAIDEVKVLGHP--CTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201
Query: 202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLI 261
+ ++K IA + + D G++ C + E G +++ +
Sbjct: 202 GIDVRDAPLKEIKVTSSRRF-----IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 256
Query: 262 VDVVKGKDLTSDGRLNIITVGGTSV 286
V + +VG T +
Sbjct: 257 VVKEPP---VPIAPPQLASVGATYL 278
Score = 50.5 bits (120), Expect = 4e-07
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 4/130 (3%)
Query: 44 SSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAP---WTSWS 100
+S +++ + + N + G FQCS G+
Sbjct: 143 TSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG 202
Query: 101 KDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGS-VEATARLEIMDPR 159
D + A + + + T DAG Y + G + A L + +P
Sbjct: 203 IDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPP 262
Query: 160 AIISRPKVLN 169
I+ P++ +
Sbjct: 263 VPIAPPQLAS 272
Score = 30.5 bits (68), Expect = 0.80
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Query: 227 IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSV 286
R++ V F C L + + +D + +
Sbjct: 168 FLRIQNVEVNAGQFATFQCSAIGRTVAGDR---LWLQGIDVRDAPLKEIKVTSSRRFIAS 224
Query: 287 LTIEDITGDDSGKYQVHVSNQHGSDS 312
+ + T D+GKY+ + + G
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGI 250
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 62.0 bits (150), Expect = 2e-12
Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
P++ E G V+F C + +W +N ++ D++M+ + ++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQ-DAEMENYAHLRAQGG 69
Query: 225 LVI---ARLKIPHVYPEDEGEFTCRVANELGEVVTS-ACLIVD 263
++ L++ +V EG + C ++N G + A L ++
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 61.2 bits (148), Expect = 4e-12
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTS--WSKDGKP---ATPNARVTIREKEDL 120
P+ P + G V F CS + W D + A +R +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 121 RF-----LEISEVTLEDAGLYTIKVENNYGSVEAT-ARLEI 155
L + V G Y + N++GS + A L I
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 35.8 bits (82), Expect = 0.003
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 242 EFTCRVANELGEVVT----SACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDS 297
FTC A+ +T + + ++ + T++L + ++
Sbjct: 29 SFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE 88
Query: 298 GKYQVHVSNQHGSD-SCYASVAV 319
G YQ +SN GS S A + +
Sbjct: 89 GXYQCVISNHFGSSYSVXAXLTI 111
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 65.1 bits (158), Expect = 3e-12
Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 12/182 (6%)
Query: 78 DLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTL----- 130
T++ C V+G P +W +DG+ + +E SE+TL
Sbjct: 22 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHW 81
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
YT +V + E + + +S +L S T C V
Sbjct: 82 LSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLF--IRKSPTITCLVVD 139
Query: 191 VPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
+ P+ ++W R + S K E Q + V + L + + + CRV
Sbjct: 140 LAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT-VTSTLPVGTRDWIEGETYQCRVT 198
Query: 249 NE 250
+
Sbjct: 199 HP 200
Score = 41.2 bits (96), Expect = 2e-04
Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 14/194 (7%)
Query: 68 FYAVPHNKICDLGDTVRFQCSVTG----QPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
+ + P + + C V + +WS+ ++ ++ +
Sbjct: 116 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT 175
Query: 123 ----LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCD 178
L + + Y +V + + + P+V
Sbjct: 176 VTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRS--TTKTSGPRAAPEVYAFATPEWPGS 233
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLD--SDMKPEVQVDSKENLVIARLKIPHVY 236
D T C +Q P D + W N + S +P S + +RL++
Sbjct: 234 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVF-SRLEVTRAE 292
Query: 237 PEDEGEFTCRVANE 250
E + EF CR +E
Sbjct: 293 WEQKDEFICRAVHE 306
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 62.7 bits (152), Expect = 9e-12
Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 35/207 (16%)
Query: 79 LGDTVRFQCSVTGQPAPWTS-----WSKDGKP---------------ATPNARVTIREKE 118
G + +C + + W + K ++ R + + +
Sbjct: 15 YGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ 74
Query: 119 DLR---FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLR 175
L+I++V L+DAG+Y + G+ +++ P I++ ++
Sbjct: 75 LSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPV--- 130
Query: 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV 235
CQ + P ++ W ++ + + + K V + L+I
Sbjct: 131 ---TSEHELTCQAEGYPK--AEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN-- 183
Query: 236 YPEDEGEFTCRVANELGEVVTSACLIV 262
F C E +A L++
Sbjct: 184 -TTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 50.8 bits (121), Expect = 1e-07
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK-DGKPATPNARVTIREKED 119
++ + + + C G P W+ D + + T ++E+
Sbjct: 112 KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREE 171
Query: 120 LRFLEISEVTL--EDAGLYTIKVENNYGSVEATARLEIMDP 158
F S + + ++ TA L I +
Sbjct: 172 KLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212
Score = 40.0 bits (93), Expect = 4e-04
Identities = 26/204 (12%), Positives = 48/204 (23%), Gaps = 69/204 (33%)
Query: 179 GDSVTFECQVQVVPPNDHD---ISWFRNNRLIKL--DSDMKPEVQVDSKENLV------- 226
G ++T EC+ V D + W ++ I + +VQ S
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 227 ---IARLKIPHVYPEDEGEFTCRV---------------------------ANELGEVVT 256
A L+I V +D G + C + + +
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHE 135
Query: 257 SAC-------------------LIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDS 297
C L + N+ TS L I +
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNV-----TSTLRINT---TTN 187
Query: 298 GKYQVHVSNQHGSDSCYASVAVEG 321
+ ++ A + +
Sbjct: 188 EIFYCTFRRLDPEENHTAELVIPE 211
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 62.1 bits (150), Expect = 2e-11
Identities = 39/205 (19%), Positives = 66/205 (32%), Gaps = 34/205 (16%)
Query: 79 LGDTVRFQCSVTGQPAP----WTSWSKDGKPAT--------PNARVTIREKEDLRF---- 122
G +V C+ TG W + G +VT+ +
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 123 -----LEISEVTLEDAGLYTIKVE-NNYGSVEATARLEIMDPRAIISRPKVLNGLENL-R 175
L ++E + D Y V G+ EATARL + +V L
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP---EATEVSPNKGTLSV 130
Query: 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL-------VIA 228
D C + P I+W+RN + +++ +M PE + S+ + +
Sbjct: 131 MEDSAQEIATCNSRNGNPAP-KITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189
Query: 229 RLKIPHVYPEDEGEFTCRVANELGE 253
L + + + F C L E
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPE 214
Score = 37.9 bits (87), Expect = 0.002
Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 18/127 (14%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNR-----LIKLDSDMKPEVQVDSKENLVI------ 227
G SV +C + + WF +R + E+QV +
Sbjct: 15 GKSVILDCTPTGTHDHYM-LEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 228 ---ARLKIPHVYPEDEGEFTCRV-ANELGEVVTSACLIVDVVKGKDLTSD--GRLNIITV 281
RL + DE ++ C V A G +A L V S G L+++
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 282 GGTSVLT 288
+ T
Sbjct: 134 SAQEIAT 140
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 60.7 bits (147), Expect = 3e-11
Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 45/189 (23%)
Query: 79 LGDTVRFQCSVT------------GQPAPWTSWSKDGKPATPNARVTIREKEDLR--FLE 124
G V + +GK + R D L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
I V+ ED G Y +++ + + +E+ + +S+P + + + T
Sbjct: 73 IYNVSKEDRGDYYMRM-LHETEDQWKITMEVYEM---VSKPMIY--------WECSNATL 120
Query: 185 ECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFT 244
C+V D ++ ++ ++ + + + + F
Sbjct: 121 TCEVLEGT--DVELKLYQGKEHLRSLR-----------------QKTMSYQWTNLRAPFK 161
Query: 245 CRVANELGE 253
C+ N + +
Sbjct: 162 CKAVNRVSQ 170
Score = 44.1 bits (104), Expect = 1e-05
Identities = 24/181 (13%), Positives = 56/181 (30%), Gaps = 41/181 (22%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFR--NNRLIKLDSDMKPEVQVD 220
+N + G +VT + ++W N ++++ + K V
Sbjct: 4 QSVPNVNAIT------GSNVTLTILKHP-LASYQRLTWLHTTNQKILEYFPNGKKTVFES 56
Query: 221 S-----KENLVIARLKIPHVYPEDEGEFTCRVANELGE---------------VVTSAC- 259
+ L+I +V ED G++ R+ +E + ++ C
Sbjct: 57 VFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECS 116
Query: 260 ---LIVDVVKGKDLT----SDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDS 312
L +V++G D+ + T+ + ++ N+ +S
Sbjct: 117 NATLTCEVLEGTDVELKLYQGKEH----LRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 172
Query: 313 C 313
Sbjct: 173 E 173
Score = 32.9 bits (75), Expect = 0.072
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 274 GRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCY 314
R+++ G L I +++ +D G Y + + ++
Sbjct: 60 DRVDLDKTNGA--LRIYNVSKEDRGDYYMRMLHETEDQWKI 98
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 62.3 bits (151), Expect = 3e-11
Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 17/217 (7%)
Query: 44 SSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWT-SWSK 101
T + + TV F C G P T W K
Sbjct: 96 KGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFK 155
Query: 102 DGKPATPNARVTIREKEDLRFLEISEVTL-----EDAGLYTIKVENNYGSVE---ATARL 153
+G + E + + S + + +V + + TA L
Sbjct: 156 NGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANL 215
Query: 154 EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM 213
+ V CQV+ P ++W N + + ++
Sbjct: 216 SETIRVPPTLEVTQQPVRA------ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS 269
Query: 214 KPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
D N + + L + D+ + TC+V ++
Sbjct: 270 TVTENKDGTYNWM-SWLLVNVSAHRDDVKLTCQVEHD 305
Score = 55.3 bits (133), Expect = 6e-09
Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 28/193 (14%)
Query: 79 LGDTVRFQCSVTG-QPAPWTSWSKDGKPATP--------------NARVTIREKEDLRFL 123
G++ C+VT P W + PA + + + +
Sbjct: 17 AGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSI 76
Query: 124 EISEVTLEDAGLYT------IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCC 177
IS +T DAG Y + + S T P A +
Sbjct: 77 SISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP----- 131
Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
+V+F C+ P D + WF+N + V ++ + K+
Sbjct: 132 -QHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIH-STAKVVLTRE 189
Query: 238 EDEGEFTCRVANE 250
+ + C VA+
Sbjct: 190 DVHSQVICEVAHV 202
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 58.6 bits (141), Expect = 4e-11
Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF--------- 122
H +G+ + C+ + ++ + + + + +
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 123 -LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
L I VT D GLYT + + + + + + +
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 55.9 bits (134), Expect = 4e-10
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM--KPEVQVDSKENLVIARLKIPHVY 236
G+ + C + D +W + + + + Q S+ ++ L I V
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82
Query: 237 PEDEGEFTCRVANELGEVVTSACLIV 262
D+G +TC ++ L S + V
Sbjct: 83 RSDQGLYTCAASSGLMTKKNSTFVRV 108
Score = 41.3 bits (96), Expect = 5e-05
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 4/88 (4%)
Query: 242 EFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRL----NIITVGGTSVLTIEDITGDDS 297
C EL + + L S LTI+ +T D
Sbjct: 27 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 86
Query: 298 GKYQVHVSNQHGSDSCYASVAVEGRKII 325
G Y S+ + V V + +
Sbjct: 87 GLYTCAASSGLMTKKNSTFVRVHEKPFV 114
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 59.7 bits (144), Expect = 7e-11
Identities = 20/183 (10%), Positives = 46/183 (25%), Gaps = 19/183 (10%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P + G ++ CS T R + ++ ++ E
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGLE------TSLRRNGTQRGLRWLARQLVDIR-E 61
Query: 132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPK-VLNGLENLRCCDGDSVTFECQVQ- 189
+++A + P V G++ T C+V
Sbjct: 62 PETQPVCFFRCARRTLQARGLIRTFQR------PDRVELMPLPPWQPVGENFTLSCRVPG 115
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
P ++ R + + + + + + + F+CR
Sbjct: 116 AGPRASLTLTLLRGAQELI----RRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171
Query: 250 ELG 252
+L
Sbjct: 172 DLR 174
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 61.7 bits (150), Expect = 8e-11
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK---PATPNARVTIREKEDLRFLEISEV 128
D G TV+F C G P P W K A N R+T+ LE+
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD---GTLEVRYA 448
Query: 129 TLEDAGLYTIKVENNYGSVEATARLEI 155
++D G Y N G+ A L +
Sbjct: 449 QVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 47.0 bits (112), Expect = 5e-06
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
G +V F C+ PP I W L+ S+ + V D L++ +
Sbjct: 400 GHTVQFVCRADGDPPPA--ILWLSPRKHLVSAKSNGRLTVFPDGT-------LEVRYAQV 450
Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
+D G + C AN G A L V
Sbjct: 451 QDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 43.2 bits (102), Expect = 7e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 269 DLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
S+GR +TV L + D+G Y +N G+DS A + V
Sbjct: 428 SAKSNGR---LTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 59.1 bits (142), Expect = 1e-10
Identities = 25/193 (12%), Positives = 50/193 (25%), Gaps = 29/193 (15%)
Query: 79 LGDTVRFQCSVTG-QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT 137
LG + + C + W ++ L + +L AG
Sbjct: 21 LGASRQLTCRLACADRGASVQWRGLDTS-----LGAVQSDTGRSVLTVRNASLSAAGTRV 75
Query: 138 IKVENNYGSVEATARLEIMD--PRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPND 195
+ + T +L + + +S ++ G C V P D
Sbjct: 76 CVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPG----------DPEVACTAHKVTPVD 125
Query: 196 HD---ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP-------HVYPEDEG-EFT 244
+ S + ++ + PEVQ + +E +
Sbjct: 126 PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALY 185
Query: 245 CRVANELGEVVTS 257
C+ L + S
Sbjct: 186 CQATMRLPGLELS 198
Score = 33.3 bits (75), Expect = 0.066
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 14/85 (16%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFR-NNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
G S C++ + W + L + SD + L + +
Sbjct: 22 GASRQLTCRLACADRGA-SVQWRGLDTSLGAVQSDTGR------------SVLTVRNASL 68
Query: 238 EDEGEFTCRVANELGEVVTSACLIV 262
G C + + L+V
Sbjct: 69 SAAGTRVCVGSCGGRTFQHTVQLLV 93
Score = 27.6 bits (60), Expect = 4.7
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 277 NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
+ + G SVLT+ + + +G S + + V
Sbjct: 51 AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 57.3 bits (138), Expect = 5e-10
Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 37/187 (19%)
Query: 79 LGDTVRFQCSVT-GQPAPWTSWSKD---------GKPATPNARVTIREKEDLRF------ 122
LG++V G+ + +W + + +P VT ++
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
L++S + +ED G Y ++ + ++ L I+ + +V N + + +
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ---LRNIQVTNHSQLFQ-NMTCEL 127
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
C V+ N W + S+ NL + E +
Sbjct: 128 HLTCSVEDADDNVS-FRWEALGN------------TLSSQPNLTV----SWDPRISSEQD 170
Query: 243 FTCRVAN 249
+TC N
Sbjct: 171 YTCIAEN 177
Score = 45.0 bits (106), Expect = 7e-06
Identities = 24/190 (12%), Positives = 51/190 (26%), Gaps = 47/190 (24%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK---LDSDMKPEVQV 219
P ++NG+ G+SVT + + I+W N + PE+ V
Sbjct: 3 LTPLMVNGIL------GESVTLPLEFPA-GEKVNFITWLFNETSLAFIVPHETKSPEIHV 55
Query: 220 DSKENLVIAR------LKIPHVYPEDEGEFTCRVAN------------------------ 249
+ + L++ ++ ED G + +++
Sbjct: 56 TNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTN 115
Query: 250 ------ELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVH 303
+ + C + D + N ++ + D Y
Sbjct: 116 HSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPN-LTVSWDPRISSEQDYTCI 174
Query: 304 VSNQHGSDSC 313
N + S
Sbjct: 175 AENAVSNLSF 184
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 58.6 bits (142), Expect = 7e-10
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
+P P + G +C + SW TPN V +R
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWI------TPNGTVMTHGAYKVRIA 392
Query: 123 ------LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
L + VT++D G+YT V N+ G+ A+A L +
Sbjct: 393 VLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 49.4 bits (118), Expect = 8e-07
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSK 222
P ++ +L +G + +C+ +SW N + K + V S
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRASTSLT---SVSWITPNGTVMTHGAYKVRIAVLSD 396
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
L +V +D G +TC V+N +G SA L V
Sbjct: 397 GTLNF-----TNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 42.4 bits (100), Expect = 1e-04
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
G +T I V L ++T D+G Y VSN G+ + A++ V G
Sbjct: 379 GTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 57.9 bits (140), Expect = 1e-09
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 71 VPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNA---RVTIREKEDLRFLEISE 127
LGDT+ +C Q S + V++R + L +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD----LFFKK 307
Query: 128 VTLEDAGLYTIKVENNYGSVEATARLEI 155
V +ED G+YT + + L++
Sbjct: 308 VQVEDGGVYTCYAMGETFNETLSVELKV 335
Score = 51.8 bits (124), Expect = 1e-07
Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 22/113 (19%)
Query: 163 SRPKVLNG---LENLRCCD----------GDSVTFECQVQVVPPNDHDISWFRNNRLIKL 209
K L+ L+ C + GD++T C + + +N +
Sbjct: 232 MHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGM--TKVWVSPSNEQVLS 289
Query: 210 DSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ L V ED G +TC E S L V
Sbjct: 290 QGSNGSVSVRNG-------DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335
Score = 39.4 bits (92), Expect = 0.001
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 15/97 (15%)
Query: 239 DEGEFTC------RVANELGEVVTSACLIVDV--------VKGKDLTSDGRLNIITVGGT 284
F C LG+ +T C + + S G ++V
Sbjct: 242 SLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVR-N 300
Query: 285 SVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEG 321
L + + +D G Y + + +++ + V
Sbjct: 301 GDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYN 337
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 57.2 bits (138), Expect = 1e-09
Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 17/168 (10%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
V C A +G R E+ + I ++ AG Y+
Sbjct: 20 KEKQVTICCQGN-YGAVEYQLHFEGSL-FAVDRPKPPERINKVKFYIPDMNSRMAGQYSC 77
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
E + L+++ + L+ G+ VTF C++
Sbjct: 78 IYRVGELWSEPSNLLDLVVTE--MYDTPTLSVHPGPEVISGEKVTFYCRLDTAT------ 129
Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
S F L+K + + A + V G + C
Sbjct: 130 SMF---LLLKEGRSSHVQRGYGKVQ----AEFPLGPVTTAHRGTYRCF 170
Score = 35.7 bits (82), Expect = 0.012
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 10/86 (11%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
VT CQ + L +D PE + IP +
Sbjct: 21 EKQVTICCQG---NYGAVEYQLHFEGSLFAVDRPKPPERINK-------VKFYIPDMNSR 70
Query: 239 DEGEFTCRVANELGEVVTSACLIVDV 264
G+++C S L + V
Sbjct: 71 MAGQYSCIYRVGELWSEPSNLLDLVV 96
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 54.1 bits (130), Expect = 1e-09
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDG--------KPATPNARV 112
++ S + + N G T C V WS K A + R+
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 113 TIREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ + +S+V+L D G YT + + A L ++
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGV 107
Score = 43.3 bits (102), Expect = 8e-06
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMK----PEVQVDSKENLVI 227
+N+ +G + C+V + + W + D K +++
Sbjct: 14 QNVTVVEGGTAILTCRVDQND--NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHE- 70
Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
+ + V DEG++TC + + + A L V
Sbjct: 71 LSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLG 106
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 56.0 bits (135), Expect = 2e-09
Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 16/181 (8%)
Query: 79 LGDTVRFQCSVTGQPAP-WTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT 137
L +V+ QC + K+ R+ + D F+ I + AG Y
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFV-IDHMDANKAGRYQ 80
Query: 138 IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD 197
+ + + LE++ + L+ L G++++ C +P
Sbjct: 81 CQYRIGHYRFRYSDTLELVVTG--LYGKPFLSADRGLVLMPGENISLTCSSAHIPF---- 134
Query: 198 ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
F L K P+ Q A + V G + C + S
Sbjct: 135 -DRF---SLAKEGELSLPQHQSGEHP----ANFSLGPVDLNVSGIYRCYGWYNRSPYLWS 186
Query: 258 A 258
Sbjct: 187 F 187
Score = 36.0 bits (83), Expect = 0.010
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
SV +CQ + +N+ ++ +K + D I H+
Sbjct: 23 DGSVKIQCQAIREAYLTQ-LMIIKNSTYREIGRRLKFWNETD-------PEFVIDHMDAN 74
Query: 239 DEGEFTCRVANELGEVVTSACLIVDV 264
G + C+ S L + V
Sbjct: 75 KAGRYQCQYRIGHYRFRYSDTLELVV 100
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 54.8 bits (132), Expect = 3e-09
Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 31/175 (17%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
V C A +G R E+ + I ++ AG Y+
Sbjct: 17 KEKQVTICCQGN-YGAVEYQLHFEGSL-FAVDRPKPPERINKVKFYIPDMNSRMAGQYSC 74
Query: 139 KVENNYGSVEATARLEIM----DPRAIIS---RPKVLNGLENLRCCDGDSVTFECQVQVV 191
E + L+++ +S P+V++ G+ VTF C++
Sbjct: 75 IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVIS---------GEKVTFYCRLDTA 125
Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
S F L+K + + A + V G + C
Sbjct: 126 T------SMF---LLLKEGRSSHVQRGYGKVQ----AEFPLGPVTTAHRGTYRCF 167
Score = 34.4 bits (79), Expect = 0.023
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 10/86 (11%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
VT CQ + L +D PE + IP +
Sbjct: 18 EKQVTICCQG---NYGAVEYQLHFEGSLFAVDRPKPPERINK-------VKFYIPDMNSR 67
Query: 239 DEGEFTCRVANELGEVVTSACLIVDV 264
G+++C S L + V
Sbjct: 68 MAGQYSCIYRVGELWSEPSNLLDLVV 93
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 53.1 bits (127), Expect = 3e-09
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN 224
+++ GLE+++ DG+ F + + +WF N +K + +
Sbjct: 9 ARLVAGLEDVQVYDGEDAVFSLDLSTIIQG----TWFLNGEELKSNEPEGQVEPGALRYR 64
Query: 225 LV----IARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
+ RL + V +D G V SA L +
Sbjct: 65 IEQKGLQHRLILHAVKHQDSGALVGFSC---PGVQDSAALTI 103
Score = 45.0 bits (106), Expect = 2e-06
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF----------LEISEVT 129
G+ F ++ +W +G+ N E LR+ L + V
Sbjct: 23 GEDAVFSLDLSTIIQG--TWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVK 80
Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDP 158
+D+G V + V+ +A L I +
Sbjct: 81 HQDSGAL---VGFSCPGVQDSAALTIQES 106
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 56.0 bits (135), Expect = 4e-09
Identities = 28/183 (15%), Positives = 43/183 (23%), Gaps = 18/183 (9%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT- 137
G V +C K+ + P + +S VT AG YT
Sbjct: 37 RGGHVTLRCHYR-HRFNNFMLYKEDRIHIP----IFHGRIFQESFNMSPVTTAHAGNYTC 91
Query: 138 --IKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPND 195
+ G + + IM R L G+ V +C
Sbjct: 92 RGSHPHSPTGWSAPSNPVVIMVTGN--HRKPSLLAHPGPLVKSGERVILQCWS---DIMF 146
Query: 196 HDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVV 255
+ + SK A I + G + C +
Sbjct: 147 EHFFLHKEGISKDPSRLVGQIHDGVSK-----ANFSIGPMMLALAGTYRCYGSVTHTPYQ 201
Query: 256 TSA 258
SA
Sbjct: 202 LSA 204
Score = 41.8 bits (98), Expect = 2e-04
Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 21/185 (11%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYTI 138
G+ V QC + K+G P+ V I + I + L AG Y
Sbjct: 133 GERVILQCW-SDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRC 191
Query: 139 KVENNYGSVEATAR---LEIMDPRAIISRPK--VLNGLENLRCCDGDSVTFECQVQVVPP 193
+ + +A L+I+ + + L+ + G+SVT C +
Sbjct: 192 YGSVTHTPYQLSAPSDPLDIV----VTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSY- 246
Query: 194 NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGE 253
+ L + + + ++ + P G + C +
Sbjct: 247 -----DMY---HLSREGGAHERRLP-AVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSP 297
Query: 254 VVTSA 258
S
Sbjct: 298 YEWSD 302
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 53.1 bits (127), Expect = 4e-09
Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSK--------DGKPATPNARVTIREK 117
+ G T+ +C + + W + P N++ +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 118 EDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAI 161
+ + + VTL+D G+Y + ++ ++
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKG 105
Score = 44.2 bits (104), Expect = 5e-06
Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 12/115 (10%)
Query: 165 PKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKP------EVQ 218
+ N E + +G ++T +C + + + W + ++ ++
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRK--NSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSD 273
S L + +P+V +DEG + C ++ +IV +
Sbjct: 60 HHSANQL---SITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRY 110
Score = 28.0 bits (62), Expect = 2.0
Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 240 EGE---FTCRVANELGEVVT--SACLIVDVVKGKDLTSDGRLNIITVGGTSV-LTIEDIT 293
EG+ C + + + + + + + ++ + +T+ ++T
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74
Query: 294 GDDSGKYQ-VHVSNQHGSDSCYASVAVEGRKII 325
D G Y+ +H S+ + V +
Sbjct: 75 LQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEF 107
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 55.6 bits (133), Expect = 5e-09
Identities = 29/258 (11%), Positives = 58/258 (22%), Gaps = 31/258 (12%)
Query: 66 PRFYAVPHNKICDLGDTVRFQC-SVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
P GD+V C V + W A + L
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL--- 63
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTF 184
+ V L D+G Y+ G T L + P +
Sbjct: 64 LRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVP---------PEEPQLSCFRKSPLSNV 111
Query: 185 ECQVQVV----PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDE 240
C+ + + D + +S++ +
Sbjct: 112 VCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPE---GDSSF 168
Query: 241 GEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTS---VLTIEDITGDDS 297
+ VA+ +G S + + V +T +D +S
Sbjct: 169 YIVSMCVASSVG-SKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS 227
Query: 298 G----KYQVHVSNQHGSD 311
++++ +
Sbjct: 228 SFYRLRFELRYRAERSKT 245
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 54.1 bits (130), Expect = 5e-09
Identities = 32/169 (18%), Positives = 49/169 (28%), Gaps = 14/169 (8%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
G++V C T A K+ P P R E ++ I +T + AG Y
Sbjct: 18 WGNSVTIWCQGT-LEAREYRLDKEESP-APWDRQNPLEPKNKARFSIPSMTEDYAGRYRC 75
Query: 139 KVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDI 198
+ G + + LE++ A + G SVT CQ +
Sbjct: 76 YYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTS--GKSVTLLCQSRSPMD----- 128
Query: 199 SWFRNNRLIKLDSDMKPEVQVDSKENLVI-ARLKIPHVYPEDEGEFTCR 246
F L K + A + V G + C
Sbjct: 129 -TF---LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCF 173
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 54.1 bits (129), Expect = 6e-09
Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 49/196 (25%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVT-LEDAGLYTI 138
G +V C + W K+G+ + L + + + +ED+G Y
Sbjct: 14 GTSVELTCPL--DSDENLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVC 62
Query: 139 KVENNYGS--VEATARLEIMDPRAIISRPKVLNGLENLRCC-----------------DG 179
+ + + AR+ D + K ++ +
Sbjct: 63 YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122
Query: 180 DSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPED 239
SV C + D I W ++ +I + K + + +
Sbjct: 123 GSVLLTCGLT-----DKTIKWLKDGSIISPLNATKN-------------TWNLGNNAKDP 164
Query: 240 EGEFTCRVANELGEVV 255
G + C+ A E +
Sbjct: 165 RGTYQCQGAKETSNPL 180
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 54.3 bits (130), Expect = 6e-09
Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 34/210 (16%)
Query: 79 LGDTVRFQCSVTGQPAPWT-----SWSKDGKPAT-----PNARVTIREKEDLRF------ 122
LGD+V C + T +W++ G+ + + E + L F
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 123 -------LEISEVTLEDAGLYTIKVE-NNYGSVEATARLEIMDPRAIISRPKVLNGLENL 174
L + + +ED G YT GS L ++ P+ ++ +
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAK------PQNTAEVQKV 126
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
+ C P I+W + + S S V + +
Sbjct: 127 QLTGEPVPMARCVSTGGRP-PAQITWHSDLGGMPQTSQ---VPGFLSGTVTVTSLWILVP 182
Query: 235 VYPEDEGEFTCRVANELGEVVTSACLIVDV 264
D + TC+V +E E + + V
Sbjct: 183 SSQVDGKQVTCKVEHESFEKPQLLTVSLTV 212
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 53.4 bits (128), Expect = 7e-09
Identities = 22/185 (11%), Positives = 52/185 (28%), Gaps = 43/185 (23%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPAT--PNARVTIREKEDLRF--------LEISEV 128
+ V F P W K N+ R L I +
Sbjct: 9 VYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL 67
Query: 129 TLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQV 188
T D Y ++ N +++ L +++ +S+P + + + T C+V
Sbjct: 68 TSSDEDEYEMESPNITDTMKFF--LYVLEM---VSKPMIY--------WECSNATLTCEV 114
Query: 189 QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVA 248
++ ++ ++ + + + + F C+
Sbjct: 115 LEGTDV--ELKLYQGKEHLRSLR-----------------QKTMSYQWTNLRAPFKCKAV 155
Query: 249 NELGE 253
N + +
Sbjct: 156 NRVSQ 160
Score = 51.5 bits (123), Expect = 4e-08
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 25/157 (15%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLI--KLDSDMKPEVQVDSKENLVI--ARLKIPH 234
+VTF V ++ W + + +S+ + ++ L L I +
Sbjct: 10 YGNVTFHVPSNVPLK---EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66
Query: 235 VYPEDEGEFTCRVANELGE--------------VVTSAC----LIVDVVKGKDLTSDGRL 276
+ DE E+ N ++ C L +V++G D+
Sbjct: 67 LTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQ 126
Query: 277 NIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
+ T+ + ++ N+ +S
Sbjct: 127 GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 163
Score = 33.0 bits (75), Expect = 0.061
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 274 GRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASV 317
R+ + TV G+ LTI ++T D +Y++ N + + V
Sbjct: 51 NRVYLDTVSGS--LTIYNLTSSDEDEYEMESPNITDTMKFFLYV 92
Score = 32.2 bits (73), Expect = 0.11
Identities = 8/79 (10%), Positives = 13/79 (16%), Gaps = 11/79 (13%)
Query: 68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISE 127
V I C V + + + T +S
Sbjct: 93 LEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKT-----------MSY 141
Query: 128 VTLEDAGLYTIKVENNYGS 146
+ K N
Sbjct: 142 QWTNLRAPFKCKAVNRVSQ 160
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 55.5 bits (134), Expect = 8e-09
Identities = 25/99 (25%), Positives = 32/99 (32%), Gaps = 15/99 (15%)
Query: 64 SSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF- 122
S+P P + G +C P W PN V R
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKW------LLPNGTVLSHASRHPRIS 402
Query: 123 ------LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
L S V L D G+YT V N G+ A+A L +
Sbjct: 403 VLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 47.8 bits (114), Expect = 3e-06
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 15/109 (13%)
Query: 157 DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
I+ P+ LN E G +C+ + + W N + + P
Sbjct: 351 SAPFIMDAPRDLNISE------GRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPR 400
Query: 217 VQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
+ V + L + HV D G +TC V N G SA L V
Sbjct: 401 ISVLNDGTLNFS-----HVLLSDTGVYTCMVTNVAGNSNASAYLNVSTA 444
Score = 39.3 bits (92), Expect = 0.001
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAV 319
G L+ R I+V L + D+G Y V+N G+ + A + V
Sbjct: 389 GTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 51.7 bits (123), Expect = 1e-08
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 14/108 (12%)
Query: 65 SPRFYAVPHNKICDLGDTVRFQCSVTGQP---APWTSWSKDGKPAT----PNARVTIREK 117
+ F P + + G V G+ P W K GK AR + +E
Sbjct: 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK-GKWLELGSKSGARFSFKES 70
Query: 118 ED------LRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR 159
+ L I +V L D G Y ++V+ +++ PR
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 49.8 bits (118), Expect = 6e-08
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 4/99 (4%)
Query: 172 ENLRCCDGDSVTFECQVQVVPPNDH-DISWFRNNRL---IKLDSDMKPEVQVDSKENLVI 227
+++ G +V D I WF+ L K + + +S N+
Sbjct: 20 DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79
Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
L I V D G + V + + V+ +
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 41.3 bits (96), Expect = 5e-05
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 267 GKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVEGRK 323
G + N + T L I + D G Y++ V + DSC ++ VE +
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 50.7 bits (121), Expect = 2e-08
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIAR----LKIPH 234
G S+ +C + ++W + ++L+ + + S ++ V L +
Sbjct: 18 GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQS 77
Query: 235 VYPEDEGEFTCRVA-NELGEVVTSACLIVDVV 265
+ D GE+ C G L V
Sbjct: 78 LTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109
Score = 44.9 bits (106), Expect = 2e-06
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 13/101 (12%)
Query: 79 LGDTVRFQCSVTGQPAPWT--SWSKDGKP---ATPNARVTIREKEDLRF-------LEIS 126
G ++ QC ++ A T +W + + + I R L +
Sbjct: 17 KGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQ 76
Query: 127 EVTLEDAGLYTIKVENN-YGSVEATARLEIMDPRAIISRPK 166
+T+ D G Y G+ LE+++ +
Sbjct: 77 SLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 52.2 bits (125), Expect = 2e-08
Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 31/190 (16%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
G++V +C T A K+G P P E ++ I +T AG Y
Sbjct: 18 RGNSVTIRCQGT-LEAQEYRLVKEGSP-EPWDTQNPLEPKNKARFSIPSMTEHHAGRYRC 75
Query: 139 KVENNYGSVEATARLEI----MDPRAIIS---RPKVLNGLENLRCCDGDSVTFECQVQVV 191
+ G E + LE+ + +S P V + G++VT +C ++
Sbjct: 76 YYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTS---------GENVTLQCGSRLR 126
Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN---LVIARLKIPHVYPEDEGEFTCRVA 248
F L + + D K +DS+ A + V P C +
Sbjct: 127 FD------RF---ILTE-EGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGS 176
Query: 249 NELGEVVTSA 258
V S
Sbjct: 177 RRHILQVWSE 186
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 50.9 bits (121), Expect = 3e-08
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 68 FYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGK--------PATPNARVTIREKED 119
++ G TV +C V WS + A + R+ +
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 120 LRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
+ IS V L D G YT + A + + ++
Sbjct: 101 HELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVLGI 139
Score = 34.0 bits (77), Expect = 0.021
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI------KLDSDMKPEVQVDSKENL 225
+ G +V +CQV+ D + W + + D + ++ + L
Sbjct: 46 SDETVVAGGTVVLKCQVKDHE--DSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHEL 103
Query: 226 VIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
+ I +V DEGE+TC + + + V +
Sbjct: 104 ---SISISNVALADEGEYTCSIFTM-PVRTAKSLVTVLGI 139
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 52.2 bits (124), Expect = 6e-08
Identities = 25/183 (13%), Positives = 47/183 (25%), Gaps = 22/183 (12%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P I G +V CS + + + + + E+S V
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIET-----PLPKKELLLPGNNRKVYELSNVQ-- 58
Query: 132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-V 190
+ G A L + +V G ++T CQV+
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWT-----PERVELAPLPSWQPVGKNLTLRCQVEGG 113
Query: 191 VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
P + + R + +K + + + F+CR +
Sbjct: 114 APRANLTVVLLRGEKELK---------REPAVGEPAEVTTTVLVRRDHHGANFSCRTELD 164
Query: 251 LGE 253
L
Sbjct: 165 LRP 167
Score = 42.2 bits (98), Expect = 1e-04
Identities = 24/202 (11%), Positives = 50/202 (24%), Gaps = 21/202 (10%)
Query: 72 PHNKICDLGDTVRFQCSVTG-QPAPWTS--WSKDGKPATPNARVTIREKEDLRFLEISEV 128
P +G + +C V G P + + K R + +
Sbjct: 93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK---REPAVGEPAEVTTTVLVR 149
Query: 129 TLEDAGLYTIKVENNYGSVEATARLEIMDPRAII-----SRPKVLNGLENLRCCDGDSVT 183
++ + E + P + + P L L T
Sbjct: 150 RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEV--DTQGT 207
Query: 184 FECQVQVVPP-NDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
C + + P ++ + ++ + P V + A + + E
Sbjct: 208 VVCSLDGLFPVSEAQVHLALGDQRL------NPTVTYGNDSFSAKASVSV-TAEDEGTQR 260
Query: 243 FTCRVANELGEVVTSACLIVDV 264
TC V T + +
Sbjct: 261 LTCAVILGNQSQETLQTVTIYS 282
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 49.8 bits (119), Expect = 2e-07
Identities = 31/187 (16%), Positives = 48/187 (25%), Gaps = 40/187 (21%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
L V +C K + V L I + AG Y
Sbjct: 21 LEKPVTLRCQGP-PGVDLYRLEKLSSSRYQDQAV----------LFIPAMKRSLAGRYRC 69
Query: 139 KVENNYGSVEATARLEIM----DPRAIIS---RPKVLNGLENLRCCDGDSVTFECQVQVV 191
+N + +LE++ + +S P V + G VT +CQ +
Sbjct: 70 SYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSS---------GGDVTLQCQTRYG 120
Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANEL 251
F L K + A I V G + C +
Sbjct: 121 F------DQF---ALYKEGDPAPYKNPERWYR----ASFPIITVTAAHSGTYRCYSFSSR 167
Query: 252 GEVVTSA 258
+ SA
Sbjct: 168 DPYLWSA 174
Score = 28.6 bits (64), Expect = 1.8
Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 19/86 (22%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
VT CQ PP + + D A L IP +
Sbjct: 22 EKPVTLRCQG---PPGVDLYRLEKLSSSRYQDQ----------------AVLFIPAMKRS 62
Query: 239 DEGEFTCRVANELGEVVTSACLIVDV 264
G + C N + S L +
Sbjct: 63 LAGRYRCSYQNGSLWSLPSDQLELVA 88
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 49.8 bits (118), Expect = 2e-07
Identities = 24/183 (13%), Positives = 52/183 (28%), Gaps = 18/183 (9%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLE 131
P + ++ CS T T ++ + E+ + +S ++
Sbjct: 9 PKKLAVEPKGSLEVNCSTTCNQPEVGGLE------TSLNKILLDEQAQWKHYLVSNIS-- 60
Query: 132 DAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ-V 190
+ + + + + P + + L + G S T EC+V V
Sbjct: 61 HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVI-LTLQPTLVAV----GKSFTIECRVPTV 115
Query: 191 VPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
P + + FR N + + + A + F+C +
Sbjct: 116 EPLDSLTLFLFRGNETLH----YETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD 171
Query: 251 LGE 253
L
Sbjct: 172 LMS 174
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 50.4 bits (120), Expect = 4e-07
Identities = 26/224 (11%), Positives = 53/224 (23%), Gaps = 25/224 (11%)
Query: 72 PHNKICDLGDTVRFQCSV-------TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
P + + L C + A + W + I +
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASS--VT 67
Query: 125 ISEVTLEDAGLY-TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
+++ + L I + P +PK NL C +
Sbjct: 68 FTDIASLNIQLTCNILTFGQLEQNVYGITIISGLP---PEKPK------NLSCIVNEGKK 118
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
C+ + + N +K + +K + + E
Sbjct: 119 MRCEWD--GGRETHLE---TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEV 173
Query: 244 TCRVANELGEVVTSACLIVDVVKGKDLT-SDGRLNIITVGGTSV 286
N LG+V + V K K + + + +
Sbjct: 174 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSIL 217
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 49.9 bits (119), Expect = 6e-07
Identities = 33/239 (13%), Positives = 64/239 (26%), Gaps = 29/239 (12%)
Query: 26 STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRF 85
S + ++ P + L P+ + T
Sbjct: 217 SNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKD-------TLMISRTPEV 269
Query: 86 QCSVTG-QPAPWT---SWSKDGKPATPNARVTIREKEDLRF-----LEISEVTLEDAGLY 136
C V +W DG E+ + + L + + Y
Sbjct: 270 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 329
Query: 137 TIKVENNYGSVEATARL-----EIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV 191
KV N + + +P+ P + L + V+ C V+
Sbjct: 330 KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP----SRDEL---TKNQVSLTCLVKGF 382
Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
P+D + W N + P + D + ++L + + F+C V +E
Sbjct: 383 YPSDIAVEWESNGQPENNYKTTPPVLDSDGS-FFLYSKLTVDKSRWQQGNVFSCSVMHE 440
Score = 27.9 bits (62), Expect = 5.0
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 13/138 (9%)
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP----------RAIISRPKVLNGL 171
++E+ + D +Y Y ++ MD A P V
Sbjct: 80 YMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLA 139
Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK 231
+ + G + C V+ P +SW N+ + P V S + + +
Sbjct: 140 PSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVT 197
Query: 232 IPHVYPEDEGEFTCRVAN 249
+P + C V +
Sbjct: 198 VPSS-SLGTQTYICNVNH 214
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 48.1 bits (114), Expect = 7e-07
Identities = 24/195 (12%), Positives = 44/195 (22%), Gaps = 22/195 (11%)
Query: 79 LGDTVRFQCSVTGQPAPWTS----WSKDGKP--------ATPNARVTIREKEDLR---FL 123
+ + C W K+ K R D+ +
Sbjct: 8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSI 67
Query: 124 EISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
I + D G Y V L + P + + +
Sbjct: 68 VILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS--ISDFEIPTSNIRR 125
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
C P H +SW N + + +++ V ++L F
Sbjct: 126 IICSTSGGFPEPH-LSWLENGEEL-NAINTTVSQDPETELYAVSSKLDFN---MTTNHSF 180
Query: 244 TCRVANELGEVVTSA 258
C + V +
Sbjct: 181 MCLIKYGHLRVNQTF 195
Score = 40.4 bits (94), Expect = 3e-04
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 13/122 (10%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNN------RLIKLDSDMKPEVQ----VDSKENLVIA 228
+ T C V + ++ D ++ PE + D N
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN---L 65
Query: 229 RLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLT 288
+ I + P DEG + C V + L + K ++ + +++
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 289 IE 290
I
Sbjct: 126 II 127
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 48.3 bits (114), Expect = 8e-07
Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 50/217 (23%)
Query: 80 GDTVRFQCSVTGQPAPWTS-------WSKDGKP-------ATPNARVTIREKEDLRF--- 122
G V CS + W S W +DG+ AT N ++ + RF
Sbjct: 15 GLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLL 74
Query: 123 ---------LEISEVTLEDAGLYTIKVEN------NYGSVEATARLEIMDPRAIISRPKV 167
L I + +ED G Y +VE +Y + + + + I +
Sbjct: 75 GDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEP 134
Query: 168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVI 227
L G C + +++ + E
Sbjct: 135 LE--------SGRPTRLSCSLPGSCEAGPPLTFSW----------TGNALSPLDPETTRS 176
Query: 228 ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDV 264
+ L + + TC++ + +V T + ++V
Sbjct: 177 SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 32.5 bits (73), Expect = 0.11
Identities = 24/195 (12%), Positives = 43/195 (22%), Gaps = 56/195 (28%)
Query: 179 GDSVTFECQVQVVPPNDHD-----ISWFR-------------NNRLIKLDSDMKPEVQVD 220
G V C + + + WFR NN ++ + + ++
Sbjct: 15 GLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLL 74
Query: 221 SKENLVIARLKIPHVYPEDEGEFTCRVAN------------------------------- 249
L I ED G + RV
Sbjct: 75 GDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEP 134
Query: 250 -ELGEVVTSACLIVDVVKGKD------LTSDGRLNIITVGGTSVLTIEDITGDDSGKYQV 302
E G +C + + + +S LT+ D
Sbjct: 135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTC 194
Query: 303 HVSNQHGSDSCYASV 317
+ Q + +V
Sbjct: 195 QMKRQGAQVTTERTV 209
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 47.9 bits (114), Expect = 8e-07
Identities = 32/177 (18%), Positives = 49/177 (27%), Gaps = 28/177 (15%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTI 138
G V +C Q ++ K A R+ + +F I +T E G Y
Sbjct: 18 QGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFP-IPSITWEHTGRYRC 75
Query: 139 KVENNYGS-------VEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVV 191
++ +E + P V+N G +VT +C QV
Sbjct: 76 YYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVN--------SGGNVTLQCDSQVA 127
Query: 192 PPNDHDISWFRNNRLIKLDSDMKPEVQ--VDSKENLVIARLKIPHVYPEDEGEFTCR 246
F L K D P+ A + V P + C
Sbjct: 128 FD------GF---ILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCY 175
Score = 32.5 bits (74), Expect = 0.11
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G VT CQ + +R + + + E+ + IP + E
Sbjct: 19 GSPVTLRCQG---GQETQEYRLYREKKTAPWITRIPQELVKK-------GQFPIPSITWE 68
Query: 239 DEGEFTCRVANELGEV 254
G + C ++
Sbjct: 69 HTGRYRCYYGSDTAGR 84
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 47.4 bits (112), Expect = 1e-06
Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 24/184 (13%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKED-LRFLEISEVTL 130
P I G +V CS + TP + + + + E+S V
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIE------TPLPKKELLLPGNNRKVYELSNVQ- 58
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQV 190
+ G A L + +V G +T CQV+
Sbjct: 59 -EDSQPMCYSNCPDGQSTAKTFLTVYWTPE-----RVELAPLPSWQPVGKQLTLRCQVEG 112
Query: 191 VPPNDH-DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
P + R + +K + + +V + +F+CR
Sbjct: 113 GAPRAQLTVVLLRGEKELKREPAVGEPAEV---------TTTVLVRRDHHGAQFSCRTEL 163
Query: 250 ELGE 253
+L
Sbjct: 164 DLRP 167
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 48.4 bits (115), Expect = 1e-06
Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 12/181 (6%)
Query: 79 LGDTVRFQCSVTG--QPAPWTSWSKDGKPATPNARVTIREKEDLR-------FLEISEVT 129
+ T + C V + P +S + T +E L I
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303
Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQ 189
+ + +V N + A I + P+V D V+ C +
Sbjct: 304 WLNGKEFKCRV--NSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMIT 361
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVAN 249
P D + W + + + + +P + D V ++L + E FTC V +
Sbjct: 362 DFFPEDITVEWQSDGQAPENYKNTQPIMDTDGS-YFVYSKLNVQKSNWEAGNTFTCSVLH 420
Query: 250 E 250
E
Sbjct: 421 E 421
Score = 28.3 bits (63), Expect = 3.8
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 6/128 (4%)
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
+ +S +T +D+ +Y E + + A + P V
Sbjct: 79 NIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTV--SSAKTTPPSVYPLAPGSAAQTNSM 136
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
VT C V+ P ++W N+ + P V L + + +P P
Sbjct: 137 VTLGCLVKGYFPEPVTVTW--NSGSLSSGVHTFPAVLQSDLYTLS-SSVTVPSS-PRPSE 192
Query: 242 EFTCRVAN 249
TC VA+
Sbjct: 193 TVTCNVAH 200
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 48.4 bits (115), Expect = 2e-06
Identities = 36/234 (15%), Positives = 63/234 (26%), Gaps = 19/234 (8%)
Query: 26 STPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRF 85
ST +I P +L + + + +
Sbjct: 208 STKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKD-------VLMISLSPIV 260
Query: 86 QCSVTG-QPAPWT---SWSKDGKPATPNARVTIREKEDLRF-----LEISEVTLEDAGLY 136
C V SW + T RE + L I +
Sbjct: 261 TCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF 320
Query: 137 TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDH 196
KV N + A I P+ + P+V VT C V P D
Sbjct: 321 KCKV--NNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDI 378
Query: 197 DISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
+ W N + + +P + D + ++L++ + ++C V +E
Sbjct: 379 YVEWTNNGKTELNYKNTEPVLDSDGS-YFMYSKLRVEKKNWVERNSYSCSVVHE 431
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 47.4 bits (112), Expect = 2e-06
Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 38/202 (18%)
Query: 79 LGDTVRFQCSVTGQPAP-----WTSW-----------------SKDGKPATPNARVTIRE 116
L D V C++ +W + P A V+
Sbjct: 17 LNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWR 76
Query: 117 KEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMD-PRAIISRPKVLNGLENL 174
+ L + + LE+AG Y +V + T +LE++ P + + +V
Sbjct: 77 LKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGM----- 131
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQ----VDSKENL--VIA 228
+ + C+ P +I+W + + ++ +V + + + V +
Sbjct: 132 ---KENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTS 188
Query: 229 RLKIPHVYPEDEGEFTCRVANE 250
LK+ + + C V +
Sbjct: 189 CLKLNSSQEDPGTVYQCVVRHA 210
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 47.9 bits (114), Expect = 2e-06
Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 16/197 (8%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDL 120
T P + + + G T C V P P T SW+ + + + + L
Sbjct: 217 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGL 276
Query: 121 RFLEISEVTL----EDAGLYTIKVENNYGSVEATARLEIM-DPRAIISRPKVLNGLENLR 175
+ S VT+ Y V + + + R+E + P + PK + L
Sbjct: 277 -YSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMI-- 333
Query: 176 CCDGDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233
+ C V V D +W+ + + E Q +S V++ L +
Sbjct: 334 ---SRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNST-YRVVSVLTVL 389
Query: 234 HVYPEDEGEFTCRVANE 250
H D E+ C+V+N+
Sbjct: 390 HQNWLDGKEYKCKVSNK 406
Score = 44.1 bits (104), Expect = 4e-05
Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 19/201 (9%)
Query: 79 LGDTVRFQCSVT--------------GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
G V C+ T G + +P+ R + + L
Sbjct: 14 PGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLA 73
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATAR-LEIMDPRAIISRPKVLNGLENLRCCD--GDS 181
IS + ED Y N+ + ++ + P V L + +
Sbjct: 74 ISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVT--LFPPSSEELQANK 131
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
T C + P ++W + +K + + + + + L + +
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHR 191
Query: 242 EFTCRVANELGEVVTSACLIV 262
++C+V +E V +
Sbjct: 192 SYSCQVTHEGSTVEKTVAPTE 212
Score = 37.9 bits (88), Expect = 0.004
Identities = 40/229 (17%), Positives = 70/229 (30%), Gaps = 25/229 (10%)
Query: 41 SPLSSRTFT-----PYSLNSAIRTRRLTSSPRFYAVPHNKICDL--GDTVRFQCSVTG-- 91
S L ++T+ S + S P + P L T C V
Sbjct: 288 SSLGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVS 347
Query: 92 --QPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTL-----EDAGLYTIKVENNY 144
P +W DG ++ + + +S +T+ D Y KV N
Sbjct: 348 HEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKA 407
Query: 145 GSVEATARLEIMDPRAIISRPKVL---NGLENLRCCDGDSVTFECQVQVVPPNDHDISWF 201
I + P+V E + + V+ C V+ P+D + W
Sbjct: 408 LPAPIEKT--ISKAKGQPREPQVYTLPPSREEM---TKNQVSLTCLVKGFYPSDIAVEWE 462
Query: 202 RNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
N + P + D + ++L + + F+C V +E
Sbjct: 463 SNGQPENNYKTTPPVLDSDGS-FFLYSKLTVDKSRWQQGNVFSCSVMHE 510
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 46.8 bits (110), Expect = 5e-06
Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 19/198 (9%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
S ++ + P +K+ +G + F C + + +
Sbjct: 188 SPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVA 247
Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENL 174
+ ++ + V + P P+ L
Sbjct: 248 IKIRNISV----------SASSGTNVVFTTEDNIFGTVIFAGYP---PDTPQ------QL 288
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
C D C + L++ S ++ +L
Sbjct: 289 NCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQM 348
Query: 235 VYPEDEGEFTCRVANELG 252
+ ++ FT N LG
Sbjct: 349 LPNQEIYNFTLNAHNPLG 366
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 46.9 bits (111), Expect = 5e-06
Identities = 44/263 (16%), Positives = 77/263 (29%), Gaps = 19/263 (7%)
Query: 4 PEEKENSLSVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLT 63
PE + S T + + P +T + T+
Sbjct: 230 PESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPE 289
Query: 64 SSPR------FYAVPHNKICDLGDTVRFQCSVTGQPAP--WTSWSKDGKPATPNARVTIR 115
+ P + L D F C V G +W GK T +
Sbjct: 290 CPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLL 349
Query: 116 EKE-DLRFLEISEVTL-----EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN 169
E+ + + S +TL T + N+ S+ + + +P A LN
Sbjct: 350 ERHSNGSQSQHSRLTLPRSLWNAGTSVTCTL--NHPSLPPQRLMALREPAAQAPVKLSLN 407
Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM--KPEVQVDSKENLVI 227
L + C+V P + + W + R + +P Q S
Sbjct: 408 LLA-SSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAW 466
Query: 228 ARLKIPHVYPEDEGEFTCRVANE 250
+ L++P +TC V++E
Sbjct: 467 SVLRVPAPPSPQPATYTCVVSHE 489
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 46.1 bits (109), Expect = 8e-06
Identities = 28/199 (14%), Positives = 57/199 (28%), Gaps = 24/199 (12%)
Query: 68 FYAVPHNKICDLGDTVRFQCSVTG-QPAPWT--SWSKDGKPATPNARVTIREKEDLRFLE 124
P + LG C++TG + A +W+ + +
Sbjct: 250 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQG--PPERDLCGCYSV 307
Query: 125 ISEVTL-----EDAGLYTIKVENNYGSVEATARL----EIMDPRAIISRPKVLNGLENLR 175
S + +T TA L P + P N
Sbjct: 308 SSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALN-- 365
Query: 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKEN----LVIARLK 231
+ VT C + P D + W + ++ + + + + + + V + L+
Sbjct: 366 ----ELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILR 421
Query: 232 IPHVYPEDEGEFTCRVANE 250
+ + F+C V +E
Sbjct: 422 VAAEDWKKGDTFSCMVGHE 440
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 45.7 bits (107), Expect = 8e-06
Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 18/202 (8%)
Query: 72 PHNKICDLGDTVRFQCSVT-----GQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEIS 126
I LGD + C + P P W + + + + + +
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLP 66
Query: 127 EVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRC-CDGDSVTFE 185
+ A L N + L P NL C + + +
Sbjct: 67 HLNHTQAFLSCSLNWGNSLQILDQVELRAGYP---------PAIPHNLSCLMNLTTSSLI 117
Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPE--VQVDSKENLVIARLKIPHVYPEDEGEF 243
CQ + P S+ + + + + + + K+ + H+
Sbjct: 118 CQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGI 177
Query: 244 TCRVANELGEVVTSACLIVDVV 265
+ N LG S L +D +
Sbjct: 178 WVQAENALG-TSMSPQLCLDPM 198
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 43.8 bits (103), Expect = 3e-05
Identities = 24/184 (13%), Positives = 48/184 (26%), Gaps = 17/184 (9%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYT 137
+TV QC ++GK + + I + + AG Y
Sbjct: 20 SEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYR 78
Query: 138 IKVENNYGSVEATAR---LEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN 194
+ + +A L+I+ + L+ G+SVT C +
Sbjct: 79 CYGSVTHSPYQLSAPSDPLDIV--ITGLYEKPSLSAQPGPTVLAGESVTLSCS------S 130
Query: 195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEV 254
+ L + + + + + P G + C +
Sbjct: 131 RSSYDMY---HLSR-EGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPY 186
Query: 255 VTSA 258
S
Sbjct: 187 EWSN 190
Score = 36.1 bits (83), Expect = 0.009
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 13/115 (11%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
++V +C R + + SK A I + +
Sbjct: 21 EETVILQCW---SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSK-----ANFSIGPMMQD 72
Query: 239 DEGEFTCRVANELGEVVTSAC-----LIVDVVKGKDLTSDGRLNIITVGGTSVLT 288
G + C + SA +++ + K S + G + L+
Sbjct: 73 LAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLS 127
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 41.4 bits (97), Expect = 4e-05
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFR--NNRLIKLDSDMKPEVQVDSKENLVI----ARLKI 232
G +VT + P N ++WF + ++++ DS + K + + L I
Sbjct: 19 GSNVTLNISESL-PENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 233 PHVYPEDEGEFTCRVANELGEVVTS 257
V ED + RV + G
Sbjct: 78 SKVQKEDNSTYIMRVLKKTGNEQEW 102
Score = 38.0 bits (88), Expect = 8e-04
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 17/103 (16%)
Query: 79 LGDTVRFQCSVT-GQPAPWTSWSKDGKPATPNARVTIREKEDLRF------------LEI 125
G V S + + +W + + +F L I
Sbjct: 18 SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 126 SEVTLEDAGLYTIKVENNYG-SVEATARLEIMDPRAIISRPKV 167
S+V ED Y ++V G E +L+++DP + +P +
Sbjct: 78 SKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDP---VPKPVI 117
Score = 31.4 bits (71), Expect = 0.12
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 274 GRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS 310
GR+ + G L I + +D+ Y + V + G+
Sbjct: 64 GRVRLDPQSGA--LYISKVQKEDNSTYIMRVLKKTGN 98
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 43.4 bits (102), Expect = 4e-05
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 179 GDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
G + C V + ND + SWF ++ + PE Q +S ++ L I
Sbjct: 32 GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR-SVSELPIVERD 90
Query: 237 PEDEGEFTCRVANE 250
+ F C+V +
Sbjct: 91 WLNGKTFKCKVNSG 104
Score = 41.1 bits (96), Expect = 2e-04
Identities = 34/185 (18%), Positives = 57/185 (30%), Gaps = 22/185 (11%)
Query: 80 GDTVRFQCSVTG----QPAPWTSWSKDGKPATPNARVTIREKEDLRF-----LEISEVTL 130
G T + C V P SW D ++ + L I E
Sbjct: 32 GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDW 91
Query: 131 EDAGLYTIKVENNY--GSVEATARLEIMDPRAIISRPKVLN---GLENLRCCDGDSVTFE 185
+ + KV + +E + PR P+V E + V+
Sbjct: 92 LNGKTFKCKVNSGAFPAPIEKSISKPEGTPRG----PQVYTMAPPKEEM---TQSQVSIT 144
Query: 186 CQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTC 245
C V+ P D W N + + + P + D + ++L + + FTC
Sbjct: 145 CMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYF-LYSKLNVKKETWQQGNTFTC 203
Query: 246 RVANE 250
V +E
Sbjct: 204 SVLHE 208
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 42.9 bits (101), Expect = 5e-05
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 179 GDSVTFECQV-QVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
G C + + + +W ++ K PE + + V + L
Sbjct: 19 GSEANLTCTLTGLRDASGVTFTWTPSSG--KSAVQGPPERDLCGCYS-VSSVLPGCAEPW 75
Query: 238 EDEGEFTCRVANE 250
FTC A
Sbjct: 76 NHGKTFTCTAAYP 88
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 43.3 bits (102), Expect = 6e-05
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
+ V+ C V+ P+D + W N + P + D L ++L + +
Sbjct: 257 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY-SKLTVDKSRWQ 315
Query: 239 DEGEFTCRVANE 250
F+C V +E
Sbjct: 316 QGNVFSCSVMHE 327
Score = 28.3 bits (63), Expect = 3.7
Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 25/138 (18%)
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP----------RAIISRPKVLNGL 171
++E+S + ED +Y + R M A P V
Sbjct: 80 YVELSSLRSEDTAVY-------F-----CTRSLNMAYWGQGTLVTVSSASTKGPSVFPLA 127
Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK 231
+ + G + C V+ P +SW N+ + P V S + + +
Sbjct: 128 PSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVT 185
Query: 232 IPHVYPEDEGEFTCRVAN 249
+P + C V +
Sbjct: 186 VPSS-SLGTQTYICNVNH 202
Score = 27.9 bits (62), Expect = 4.4
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 63 TSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDL 120
P+ Y +P ++ + V C V G P+ W +G+P D
Sbjct: 240 PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDG 299
Query: 121 RFLEISEVTL 130
F S++T+
Sbjct: 300 SFFLYSKLTV 309
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 41.4 bits (97), Expect = 1e-04
Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 17/172 (9%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARV-TIREKEDLRFLEISEVTLEDAGLYT 137
+TV QC ++G + + IS +T + AG Y
Sbjct: 21 SEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79
Query: 138 IKVENNYGSVEATAR---LEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPN 194
+ + +A L+I+ + L+ G++VT C + +
Sbjct: 80 CYGSVTHSPYQVSAPSDPLDIV--IIGLYEKPSLSAQPGPTVLAGENVTLSCSSR---SS 134
Query: 195 DHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
R + + P G + C
Sbjct: 135 YDMYHLSREGE-------AHERRLPAGPKVNGTFQADFPLGPATHGGTYRCF 179
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 40.2 bits (94), Expect = 1e-04
Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 16/100 (16%)
Query: 179 GDSVTFECQVQVVPPNDHD---ISWFRNNR---LIKLDSDMKPEVQVDSKENLVIAR--- 229
GDSVT C +QV ++W R+ + P + V AR
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 230 ------LKIPHVYPEDEGEFTCRVAN-ELGEVVTSACLIV 262
L++ + EDEG +TC G L V
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 39.4 bits (92), Expect = 2e-04
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 24/112 (21%)
Query: 71 VPHNKICDLGDTVRFQCSVTGQPAP-----WTSWSKDGKPAT-----PNARVTIREKEDL 120
P LGD+V C + +W++ G+ + + E + L
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 121 RF-------------LEISEVTLEDAGLYTIKVENN-YGSVEATARLEIMDP 158
F L + + +ED G YT GS L ++
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 41.6 bits (97), Expect = 1e-04
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 13/140 (9%)
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSV 182
L I VT D+G Y ++ +A L++ + + ++ +
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVD--------VKGYKDGGI 136
Query: 183 TFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGE 242
EC+ P I W NN+ + + P V V A + +
Sbjct: 137 HLECRSTGWYPQPQ-IQW-SNNKGENIPTVEAPVVADGVGLYAVAASVIMR---GSSGEG 191
Query: 243 FTCRVANELGEVVTSACLIV 262
+C + + L + +A + +
Sbjct: 192 VSCTIRSSLLGLEKTASISI 211
Score = 36.2 bits (83), Expect = 0.007
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 15/86 (17%)
Query: 179 GDSVTFECQVQVVPPNDH-DISWFRNNR----LIKLDSDMKPEVQVDSKENLVI------ 227
G+ C + + ++ W ++ + D + Q
Sbjct: 19 GEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI 78
Query: 228 ----ARLKIPHVYPEDEGEFTCRVAN 249
A L+I +V D G++ C +
Sbjct: 79 TAGKAALRIHNVTASDSGKYLCYFQD 104
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 41.5 bits (97), Expect = 1e-04
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 157 DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMK 214
P I P + + L + C V V +D D ISWF NN +
Sbjct: 9 GPSVFIFPPNIKDVL-----MISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT 63
Query: 215 PEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
+S V++ L I H EF C+V N+
Sbjct: 64 HREDYNSTIR-VVSTLPIQHQDWMSGKEFKCKVNNK 98
Score = 41.1 bits (96), Expect = 2e-04
Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 18/183 (9%)
Query: 80 GDTVRFQCSVTG-QPAPWT---SWSKDGKPATPNARVTIREKEDLRFLEISEVTL----- 130
T + C V SW + T RE + +S + +
Sbjct: 26 SLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW 85
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV---LNGLENLRCCDGDSVTFECQ 187
+ KV + + I + ++ P+V E L V+ C
Sbjct: 86 MSGKEFKCKVN--NKDLPSPIERTISKIKGLVRAPQVYILPPPAEQL---SRKDVSLTCL 140
Query: 188 VQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
V P D + W N + D P + D + ++L + E F+C V
Sbjct: 141 VVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIY-SKLNMKTSKWEKTDSFSCNV 199
Query: 248 ANE 250
+E
Sbjct: 200 RHE 202
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 41.4 bits (97), Expect = 2e-04
Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 38/220 (17%)
Query: 62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSW-----------------SKDGK 104
+ P P +G + +C+V G P W
Sbjct: 4 IHQWPATLVQP------VGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQIS 57
Query: 105 PATPNARVTI-REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA------RLEIMD 157
P ++ R ++ L ++ L D+G Y + G+ T L +++
Sbjct: 58 SEVPQ-NLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVE 116
Query: 158 PRAIISRPKV-LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPE 216
+ P+V + T C P+ ++SW+ N + + P+
Sbjct: 117 DLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQ 176
Query: 217 V---QVDSKENL--VIARLKIPHV-YPEDEGEFTCRVANE 250
Q ++ + +RL++ + F C+V
Sbjct: 177 PLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 216
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 41.2 bits (96), Expect = 2e-04
Identities = 25/191 (13%), Positives = 59/191 (30%), Gaps = 22/191 (11%)
Query: 79 LGDTVRFQCSVTGQPAP---WTSWSKDGKPATPNARVTIREKEDLRF-----LEISEVTL 130
+ + +C V P+ +W+++ + ++E + + + +S
Sbjct: 27 ISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDW 86
Query: 131 EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLN-GLENLRCCDGDSVTFECQVQ 189
+T V++ + + + E L VT C V+
Sbjct: 87 LSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEEL---SLSRVTLSCLVR 143
Query: 190 VVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL----------VIARLKIPHVYPED 239
P D +I W R++R + + V + + V +++ +
Sbjct: 144 GFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNG 203
Query: 240 EGEFTCRVANE 250
F C +E
Sbjct: 204 GTVFACMAVHE 214
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 39.1 bits (91), Expect = 2e-04
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 163 SRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKL---DSDMKPEVQV 219
S +NG+ G+SVTF +Q I+W + + DS+ P V V
Sbjct: 4 SEIFTVNGIL------GESVTFPVNIQEPRQVKI-IAWTSKTSVAYVTPGDSETAPVVTV 56
Query: 220 DS---KENLVI----ARLKIPHVYPEDEGEFTCRVANELGEVVTS 257
E + L I + ED G++ + + T+
Sbjct: 57 THRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTT 101
Score = 29.5 bits (66), Expect = 0.47
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 17/79 (21%)
Query: 79 LGDTVRFQCSVT-GQPAPWTSWSKDG-----KPATPNARVTIREKED-----LRF----- 122
LG++V F ++ + +W+ P + +
Sbjct: 13 LGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNY 72
Query: 123 -LEISEVTLEDAGLYTIKV 140
L IS++ +EDAG Y +
Sbjct: 73 NLVISDLRMEDAGDYKADI 91
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 39.5 bits (92), Expect = 6e-04
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 179 GDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
+ C V V D + +W+ + + E Q +S V++ L + H
Sbjct: 18 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR-VVSVLTVLHQD 76
Query: 237 PEDEGEFTCRVANE 250
+ E+ C+V+N+
Sbjct: 77 WLNGKEYKCKVSNK 90
Score = 35.6 bits (82), Expect = 0.012
Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 18/184 (9%)
Query: 79 LGDTVRFQCSVTG-QPAPWT---SWSKDGKPATPNARVTIREKEDLRF-----LEISEVT 129
+ T C V +W DG E+ + + L +
Sbjct: 17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 76
Query: 130 LEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVL---NGLENLRCCDGDSVTFEC 186
+ Y KV ++ A I + P+V + L + V+ C
Sbjct: 77 WLNGKEYKCKVS--NKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL---TKNQVSLTC 131
Query: 187 QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
V+ P+D + W N + P + D + ++L + + F+C
Sbjct: 132 LVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFF-LYSKLTVDKSRWQQGNVFSCS 190
Query: 247 VANE 250
V +E
Sbjct: 191 VMHE 194
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 39.1 bits (91), Expect = 8e-04
Identities = 34/183 (18%), Positives = 57/183 (31%), Gaps = 16/183 (8%)
Query: 79 LGDTVRFQCSVTG-QPAPWT---SWSKDGKPATPNARVTIREKEDLRF-----LEISEVT 129
+ T + C V SW D E+ + F L I
Sbjct: 17 ITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQD 76
Query: 130 LEDAGLYTIKVENNY--GSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQ 187
+ + +V + +E T P+A P+V D V+ C
Sbjct: 77 WLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKA----PQVYTLPPPKEQMAKDKVSLTCM 132
Query: 188 VQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
+ P D + W N + + + +P + D V ++L + E FTC V
Sbjct: 133 ITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYF-VYSKLNVQKSNWEAGNTFTCSV 191
Query: 248 ANE 250
+E
Sbjct: 192 LHE 194
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 38.7 bits (89), Expect = 0.001
Identities = 26/202 (12%), Positives = 49/202 (24%), Gaps = 25/202 (12%)
Query: 72 PHNKICDLGDTVRFQCSV-------TGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLE 124
P + + L C + A + W + I +
Sbjct: 11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII--NRTASSVT 68
Query: 125 ISEVTLEDAGLY-TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVT 183
+++ + L I + P +NL C +
Sbjct: 69 FTDIASLNIQLTCNILTFGQLEQNVYGITIISGLP---------PEKPKNLSCIVNEGKK 119
Query: 184 FECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEF 243
C+ H + F + + D+ + + + V E
Sbjct: 120 MRCEWD-GGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI----EV 174
Query: 244 TCRVANELGEVVTSACLIVDVV 265
N LG+ VTS + D V
Sbjct: 175 WVEAENALGK-VTSDHINFDPV 195
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 38.0 bits (88), Expect = 0.002
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 157 DPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMK 214
P + PK + L + C V V D + +W+ + +
Sbjct: 22 GPSVFLFPPKPKDTLMI-----SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP 76
Query: 215 PEVQVDSKENLVIARLKIPHVYPEDEGEFTCRVANE 250
E Q +S V++ L + H + E+ C+V+N+
Sbjct: 77 REEQYNSTYR-VVSVLTVLHQDWLNGKEYKCKVSNK 111
Score = 33.0 bits (75), Expect = 0.085
Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 18/184 (9%)
Query: 79 LGDTVRFQCSVTG---QPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTL---- 130
+ T C V + +W DG E+ + + +S +T+
Sbjct: 38 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 97
Query: 131 -EDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKV---LNGLENLRCCDGDSVTFEC 186
+ Y KV + ++ A I + P+V + L + V+ C
Sbjct: 98 WLNGKEYKCKV--SNKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL---TKNQVSLTC 152
Query: 187 QVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEGEFTCR 246
V+ P+D + W N + P + D + ++L + + F+C
Sbjct: 153 LVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFF-LYSKLTVDKSRWQQGNVFSCS 211
Query: 247 VANE 250
V +E
Sbjct: 212 VMHE 215
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 36.5 bits (84), Expect = 0.003
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKI 232
+ + V F Q + + N +S+ N + I K ++ +D ++ + +
Sbjct: 46 AVEILEKGQVRFWMQAEKLSSNA-KVSYIFNEKEIF--EGPKYKMHIDRNTGII--EMFM 100
Query: 233 PHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
+ EDEG +T ++ + ++ LI DV K
Sbjct: 101 EKLQDEDEGTYTFQIQDGKATGHSTLVLIGDVYK 134
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 35.9 bits (82), Expect = 0.003
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G +V C +I W N++ I D D K + +L + E
Sbjct: 21 GTTVILTCPQY----PGSEILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFS----ELE 70
Query: 239 DEGEFTCRVANELGEVVTS 257
G + C E
Sbjct: 71 QSGYYVCYPRGSKPEDANF 89
Score = 30.9 bits (69), Expect = 0.15
Identities = 14/70 (20%), Positives = 19/70 (27%), Gaps = 4/70 (5%)
Query: 80 GDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVT-LEDAGLYTI 138
G TV C P W + K D L + E + LE +G Y
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDK-NIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
Query: 139 KVENNYGSVE 148
+
Sbjct: 78 YPRGSKPEDA 87
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 35.8 bits (83), Expect = 0.003
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
G V CS + + + K + + + EI V G Y
Sbjct: 22 QGTFVTVVCSYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHY 78
Score = 31.6 bits (72), Expect = 0.082
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G VT C +++L+ D ++ ++ +I V
Sbjct: 23 GTFVTVVCSYSD---------KHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNET 73
Query: 239 DEGEFTCR 246
G ++C
Sbjct: 74 ITGHYSCI 81
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 36.0 bits (83), Expect = 0.003
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 179 GDSVTFECQVQVVPPNDHDISWF--RNNRLIKLDSDMKPEVQVDSKENLVI-----ARLK 231
G +VT + I+W +N ++++ + + + + V L
Sbjct: 18 GSNVTLKIHKDP-LGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALH 76
Query: 232 IPHVYPEDEGEFTCRVANE 250
I +V ED+G + RV E
Sbjct: 77 ISNVRKEDKGTYYMRVLRE 95
Score = 33.7 bits (77), Expect = 0.021
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 15/94 (15%)
Query: 79 LGDTVRFQCSVTGQPAP----WT--------SWSKDGKPATPNARVTIREKEDLR--FLE 124
G V + W ++ + + R + L
Sbjct: 17 TGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALH 76
Query: 125 ISEVTLEDAGLYTIKVENNYGSVEATARLEIMDP 158
IS V ED G Y ++V E LE+ DP
Sbjct: 77 ISNVRKEDKGTYYMRV-LRETENELKITLEVFDP 109
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 36.4 bits (84), Expect = 0.003
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIIS 163
L I V D G YT ++ EA L++ DP I+
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWIN 127
Score = 36.1 bits (83), Expect = 0.004
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 179 GDSVTFECQVQV-VPPNDHDISWFRNNR----LIKLDSDMKPEVQVDSKENLVI------ 227
GD C++ ++ W+R+ + + + Q
Sbjct: 21 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 80
Query: 228 ----ARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIV 262
L+I +V DEG +TC + + + L V
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 35.7 bits (82), Expect = 0.004
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 179 GDSVTFECQVQVVPPNDHD--ISWFRNNR-----LIKLDSDMKPEVQVDSKENLVIAR-- 229
G S C ++WFR+ + + + + + +
Sbjct: 22 GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQA 81
Query: 230 -LKIPHVYPEDEGEFTCRVANELGEVVT 256
L I V D + CRV V T
Sbjct: 82 ELHIRDVRGHDASIYVCRVEVLGLGVGT 109
Score = 31.1 bits (70), Expect = 0.15
Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 18/86 (20%)
Query: 80 GDTVRFQCSVT----GQPAPWTSWSKDGKPATPNARVTIREKEDLR-------------- 121
G + CS +W +D R E
Sbjct: 22 GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQA 81
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSV 147
L I +V DA +Y +VE V
Sbjct: 82 ELHIRDVRGHDASIYVCRVEVLGLGV 107
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 35.1 bits (81), Expect = 0.005
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
LGDTV +C + + A W +G + ++ + + LEDAG Y
Sbjct: 18 LGDTVTLRCHLP-RMAAWVQLWLNGTLRFDKEKDKEQDAAEFS---FAVTNLEDAGTY 71
Score = 29.7 bits (67), Expect = 0.47
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
GD+VT C +P + + N L K + A E
Sbjct: 19 GDTVTLRCH---LPRMAAWVQLWLNGTLRFDKEKDKEQDA---------AEFSFAVTNLE 66
Query: 239 DEGEFTCR 246
D G + CR
Sbjct: 67 DAGTYQCR 74
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 36.9 bits (85), Expect = 0.005
Identities = 29/208 (13%), Positives = 62/208 (29%), Gaps = 29/208 (13%)
Query: 72 PHNKICDLGDTVRFQCSVT-------------GQPAPWTSWSKDGKPAT----PNARVTI 114
P + G + +C + ++ + R +
Sbjct: 34 PRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSA 93
Query: 115 REKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEAT----ARLEIMDPRAIISRPKV-L 168
+ LEI D+ LY N+ RL +++ + P+V +
Sbjct: 94 ECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV 153
Query: 169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--LDSDMKPEVQVDSKENLV 226
T C P+ ++SW+ N + + + +D +P + + +
Sbjct: 154 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSR 213
Query: 227 IA---RLKIPHV-YPEDEGEFTCRVANE 250
A RL++ + F C+V
Sbjct: 214 YALSSRLRVSATFWQNPRNHFRCQVQFY 241
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 35.3 bits (81), Expect = 0.005
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 22/104 (21%)
Query: 79 LGDTVRFQCSVTGQPAPWT-SWSKDGKP---------ATPNARVTIREKEDLRF------ 122
+G V C+ + T W + P T RVT ++
Sbjct: 11 VGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISE 70
Query: 123 ----LEISEVTLEDAGLYTIKVENN--YGSVEATARLEIMDPRA 160
L I D+GLY +VE + + T L++
Sbjct: 71 GDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
Score = 31.0 bits (70), Expect = 0.15
Identities = 16/82 (19%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFR--------NNRLIKLD-----SDMKPEVQVDSKENL 225
G VT C W R N LI + + +
Sbjct: 12 GHPVTLPCTYST-YRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISE 70
Query: 226 VIARLKIPHVYPEDEGEFTCRV 247
L I + D G + CRV
Sbjct: 71 GDVSLTIENSVESDSGLYCCRV 92
Score = 26.8 bits (59), Expect = 4.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 287 LTIEDITGDDSGKYQ 301
LTIE+ DSG Y
Sbjct: 75 LTIENSVESDSGLYC 89
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 37.2 bits (85), Expect = 0.005
Identities = 24/203 (11%), Positives = 48/203 (23%), Gaps = 19/203 (9%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTI 114
S ++ + P +K+ G + C + + +
Sbjct: 193 SPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVA 252
Query: 115 REKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENL 174
+ L I + I ++ YG+V + + + L
Sbjct: 253 -----IHILNIPVSENSGTNIIFITDDDVYGTV--------------VFAGYPPDVPQKL 293
Query: 175 RCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPH 234
C D C L + S RL +
Sbjct: 294 SCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQM 353
Query: 235 VYPEDEGEFTCRVANELGEVVTS 257
++ FT N LG+ ++
Sbjct: 354 HPGQEIHNFTLTGRNPLGQAQSA 376
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 35.2 bits (81), Expect = 0.005
Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 11/80 (13%)
Query: 179 GDSVTFECQVQVVPPNDHD---ISWFRNNRLIKL---DSDMKPEVQVDSKENLVI----- 227
++ CQ + W L+ K +
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 228 ARLKIPHVYPEDEGEFTCRV 247
L++ ++ +D+G + C +
Sbjct: 69 WTLRLHNLQIKDKGLYQCII 88
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 36.8 bits (85), Expect = 0.006
Identities = 37/216 (17%), Positives = 65/216 (30%), Gaps = 41/216 (18%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSW--------------SKDGKPATPNA-----RV 112
P I G +V+ +C A W S +G AT +
Sbjct: 31 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKF 90
Query: 113 TIREKEDLRF-LEISEVTLEDAGLY-------TIKVENNYGSVEATARLEIMDPRAIISR 164
I L ++ ED+ Y T N T RL + + +
Sbjct: 91 LINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGT-RLTVTEDLKNVFP 149
Query: 165 PKVLNGLENLRCCD---GDSVTFECQVQVVPPNDHDISWFRNNRLIK------LDSDMKP 215
P+V + + T C P+ ++SW+ N + + +
Sbjct: 150 PEVA--VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 207
Query: 216 EVQVDSKENLVIARLKIPHV-YPEDEGEFTCRVANE 250
DS+ +L +RL++ + F C+V
Sbjct: 208 PALNDSRYSLS-SRLRVSATFWQNPRNHFRCQVQFY 242
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 36.5 bits (84), Expect = 0.006
Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 29/206 (14%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSW------------------SKDGKPATPNARVT 113
P NK+ G V C T W K P+
Sbjct: 6 PRNKVAVTGGKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKA 64
Query: 114 IREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA-----RLEIMDPRAIISRPKV- 167
R ++ L + T +Y GS RL +++ ++ PKV
Sbjct: 65 SRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVS 124
Query: 168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--LDSDMKPEVQVDSKENL 225
L + T C + P+ ++SW+ N + + + +D + + + L
Sbjct: 125 LFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCL 184
Query: 226 VIARLKIPHV-YPEDEGEFTCRVANE 250
+RL++ + F C+V
Sbjct: 185 S-SRLRVSATFWHNPRNHFRCQVQFH 209
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 36.9 bits (84), Expect = 0.008
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 5/77 (6%)
Query: 82 TVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT-IKV 140
C + + A ++ W L I +T + G Y
Sbjct: 517 RYYLSCPMESRHATYS-WRHKENVEQSCEPGHQSPNCILF---IENLTAQQYGHYFCEAQ 572
Query: 141 ENNYGSVEATARLEIMD 157
E +Y +L D
Sbjct: 573 EGSYFREAQHWQLLPED 589
Score = 28.8 bits (63), Expect = 2.5
Identities = 10/86 (11%), Positives = 19/86 (22%), Gaps = 13/86 (15%)
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
C + SW + + L I ++ + G
Sbjct: 518 YYLSCPM---ESRHATYSWRHKENVEQSCEPGHQSPNCI---------LFIENLTAQQYG 565
Query: 242 EFTCRVANELGEVVTSACLIVDVVKG 267
+ C A E + + G
Sbjct: 566 HYFC-EAQEGSYFREAQHWQLLPEDG 590
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 34.5 bits (79), Expect = 0.008
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 24/101 (23%)
Query: 79 LGDTVRFQCSVTGQPAPWTS---WSKDGKP---------ATPNARVTIREKEDLRF---- 122
+G CS T + W K P T VT ++ +
Sbjct: 8 VGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL 67
Query: 123 ------LEISEVTLEDAGLYTIKVENN--YGSVEATARLEI 155
L I VTL+D G Y +++ + +L+I
Sbjct: 68 NKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
Score = 30.7 bits (69), Expect = 0.22
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 18/85 (21%)
Query: 179 GDSVTFECQVQV-VPPNDHDISWFR---------------NNRLIKLDSDMKPEVQVDSK 222
G + C + + W + + R + + +++ D
Sbjct: 9 GKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLN 68
Query: 223 ENLVIARLKIPHVYPEDEGEFTCRV 247
+ L I +V +D G + CR+
Sbjct: 69 KG--DVSLIIKNVTLDDHGTYCCRI 91
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 34.9 bits (80), Expect = 0.008
Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 18/105 (17%)
Query: 179 GDSVTFECQVQVVPPNDHD--ISWFRN----------------NRLIKLDSDMKPEVQVD 220
G VT C D +W I K +Q
Sbjct: 14 GSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWV 73
Query: 221 SKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVV 265
+ + I ++ D G FTC V N V ++ + + V
Sbjct: 74 GDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 36.0 bits (83), Expect = 0.009
Identities = 30/217 (13%), Positives = 63/217 (29%), Gaps = 36/217 (16%)
Query: 62 LTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSW-----------------SKDGK 104
L +PR+ VP G V +C + PW SW D +
Sbjct: 4 LEQNPRWRLVP------RGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKE 57
Query: 105 PATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATA------RLEIMDP 158
+ + + L + + ++ + +L +++
Sbjct: 58 VKSLPGADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLED 117
Query: 159 RAIISRPKV-LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEV 217
+ P+V + T C P+ ++SW+ N + + P+
Sbjct: 118 LKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQP 177
Query: 218 ---QVDSKENLVIA--RLKIPHV-YPEDEGEFTCRVA 248
Q ++ RL++ + F C+V
Sbjct: 178 LKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ 214
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 34.5 bits (78), Expect = 0.011
Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 179 GDSVTFECQVQVVPPNDHDISW--FRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
G+ EC V+ + ++W + L+ + + ++ + L ++
Sbjct: 29 GELFKIECPVKYCVHRPN-VTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIH 87
Query: 237 PEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTS 272
D G ++C N +V+ S + + V + +S
Sbjct: 88 LSDNGSYSC-STNFNSQVINSHSVTIHVRERSQNSS 122
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 34.8 bits (79), Expect = 0.012
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 26/116 (22%)
Query: 179 GDSVTFECQVQVVPPNDH-DISWFRNN------RLIKLDSDMKPEVQVD----------- 220
G +V C Q+ ISW + ++ K + + + E
Sbjct: 19 GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFG 78
Query: 221 ------SKENLVIARLKIPHVYPEDEGEFTCRVANEL--GEVVTSACLIVDVVKGK 268
S NL L++ HV+P+D G + C+VA E A +V V G
Sbjct: 79 DFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 134
Score = 30.2 bits (67), Expect = 0.38
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 274 GRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGSD 311
GR ++ + + L + + D G+Y V+
Sbjct: 82 GRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRT 118
Score = 26.7 bits (58), Expect = 6.9
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 111 RVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSVEATARLE 154
R ++ L ++ V +D G Y +V E +
Sbjct: 83 RASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 125
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 35.8 bits (82), Expect = 0.013
Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 31/209 (14%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSW------------------SKDGKPATPNARVT 113
P ++I D+G V C + W K + +
Sbjct: 9 PSHQIIDMGQMVTLNCDPVSN-HLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFS 67
Query: 114 IREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEAT----ARLEIMDPRAIISRPKV- 167
+ + F L+I LED+ +Y E RL +++ + P+V
Sbjct: 68 VERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVA 127
Query: 168 LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--LDSDMKPEVQVDSKENL 225
+ T C P+ ++SW+ N + + + +D +P + + +
Sbjct: 128 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 187
Query: 226 VIA---RLKIPHV-YPEDEGEFTCRVANE 250
A RL++ + F C+V
Sbjct: 188 RYALSSRLRVSATFWQNPRNHFRCQVQFY 216
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 34.3 bits (79), Expect = 0.013
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 79 LGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLY 136
G V CS + + + K + + + EI V G Y
Sbjct: 22 QGTFVTVVCSYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHY 78
Score = 31.2 bits (71), Expect = 0.15
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G VT C +++L+ D ++ ++ +I V
Sbjct: 23 GTFVTVVCSYSD---------KHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNET 73
Query: 239 DEGEFTCR 246
G ++C
Sbjct: 74 ITGHYSCI 81
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 34.5 bits (79), Expect = 0.015
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 21/108 (19%)
Query: 179 GDSVTFECQVQVVPPNDHD--ISWFR-----------------NNRLIKLDSDMKPEVQ- 218
G++ C+ + P + I W + D+K V
Sbjct: 20 GETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHF 79
Query: 219 VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVK 266
+ A + + ++ D G + C+V G L+V +VK
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV-LVK 126
Score = 31.8 bits (72), Expect = 0.095
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 123 LEISEVTLEDAGLYTIKVENNYGSVEATARLEIM 156
+ ++ + L D G Y KV+ G L ++
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 35.2 bits (81), Expect = 0.017
Identities = 34/211 (16%), Positives = 62/211 (29%), Gaps = 33/211 (15%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSW--------------SKDGKPATPNA-----RV 112
P I G +V+ +C A W S +G AT +
Sbjct: 8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKF 67
Query: 113 TIREKEDLRF-LEISEVTLEDAGLY----TIKVENNYGSVEATARLEIMDPRAIISRPKV 167
I L ++ ED+ Y + RL +++ + P+V
Sbjct: 68 LINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEV 127
Query: 168 -LNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK------LDSDMKPEVQVD 220
+ T C P+ ++SW+ N + + + D
Sbjct: 128 AVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALND 187
Query: 221 SKENLVIARLKIPHV-YPEDEGEFTCRVANE 250
S+ L +RL++ + F C+V
Sbjct: 188 SRYALS-SRLRVSATFWQNPRNHFRCQVQFY 217
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 35.9 bits (81), Expect = 0.018
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 177 CDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
G + +C N + W N ++K +S + + L I ++
Sbjct: 546 KHGGTAELKCSQ---KSNLARVFWKFQNGVLKAESPKYGLMGRKN--------LLIFNLS 594
Query: 237 PEDEGEFTCRVANELGEVVTSACLIVDVV 265
D G + C ++ E + T ++ V
Sbjct: 595 EGDSGVYQC-LSEERVKNKTVFQVVAKHV 622
Score = 30.1 bits (66), Expect = 1.1
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 4/97 (4%)
Query: 81 DTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFLEISEVTLEDAGLYT-IK 139
T +CS A W + L I ++ D+G+Y +
Sbjct: 549 GTAELKCSQKSNLARVF-WKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLS 605
Query: 140 VENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRC 176
E + + ++ +P V L ++
Sbjct: 606 EERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQT 642
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.023
Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 68/214 (31%)
Query: 122 FLEISEVTLEDAGLYTIKVENNYGSVEAT------------ARLEIMDPRAIISRPKVLN 169
F EI+E + YT + E G + AT A E + + +I
Sbjct: 1707 FKEINEHSTS----YTFRSEK--GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 170 GL---EN--LRCCDGDSVTFECQVQVV----------PPNDHDISWFRNNRLIKLD-SDM 213
G E L D ++ E V+VV P D N +I ++ +
Sbjct: 1761 GHSLGEYAAL-ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR--SNYGMIAINPGRV 1817
Query: 214 KPEVQVDSKENLV--IARLKIPHVYPEDEGEFTCRVAN--ELGE-VVTS--------ACL 260
++ + +V + + G + N + V +
Sbjct: 1818 AASFSQEALQYVVERVG---------KRTGWL-VEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 261 IVDVVKGKDLTSDGRLNIITVGGTSVLTIEDITG 294
+++ +K + +++II + + L++E++ G
Sbjct: 1868 VLNFIKLQ------KIDIIELQKS--LSLEEVEG 1893
Score = 35.4 bits (81), Expect = 0.026
Identities = 53/309 (17%), Positives = 83/309 (26%), Gaps = 111/309 (35%)
Query: 29 RSTPRSTPPRSI------------SP-LSSRTFTPYSLNSAIRT--RRLTSSPRFYAVPH 73
+ P ++ P SI SP LS T + + L + +
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 74 NKICDLGDTVRFQCSVTGQPAPWTSWS---------KDGKPATPN-ARVTIREKE---DL 120
N G V+G P S K P+ + +R+ E++
Sbjct: 372 N-----GAK---NLVVSGPPQ-----SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 121 RFLEISE----VTLEDAGLYTIKVENNYGSVEATAR-LEIMDPRAIISRPKVL---NGLE 172
RFL ++ L A I + +V A+ ++I P V +G
Sbjct: 419 RFLPVASPFHSHLLVPA-SDLINKDLVKNNVSFNAKDIQI--P--------VYDTFDG-S 466
Query: 173 NLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKI 232
+LR G + P W E + K
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVK----W----------------------ETTT--QFKA 498
Query: 233 PHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVLTIEDI 292
H+ D G G L G G + +I G T++
Sbjct: 499 THIL--DFGP---------GGASGLGVLTHRNKDGT-----G-VRVIVAG-----TLDIN 536
Query: 293 TGDDSGKYQ 301
DD G Q
Sbjct: 537 PDDDYGFKQ 545
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 35.1 bits (80), Expect = 0.030
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 176 CCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHV 235
+ C+ P ++ L+K D + + ++ +A I +
Sbjct: 338 EVNSGKFNPICKASGWPLPTNEEMT-----LVKPDGTVLHPKDFNHTDHFSVAIFTIHRI 392
Query: 236 YPEDEGEFTCRVANELGEVVTSACLIVDV 264
P D G + C V G V + V V
Sbjct: 393 LPPDSGVWVCSVNTVAGMVEKPFNISVKV 421
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 32.8 bits (75), Expect = 0.030
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 66 PRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRF--- 122
P A P I LG V F C ++ + T N + +
Sbjct: 10 PSISAEPGTVI-PLGSHVTFVCRGP-VGVQTFRLERESRS-TYNDTEDVSQASPSESEAR 66
Query: 123 LEISEVTLEDAGLYT 137
I V+ +AG Y
Sbjct: 67 FRIDSVSEGNAGPYR 81
Score = 29.7 bits (67), Expect = 0.46
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPE 238
G VTF C+ P R +R D++ + E AR +I V
Sbjct: 23 GSHVTFVCR---GPVGVQTFRLERESRSTYNDTEDVSQASPSESE----ARFRIDSVSEG 75
Query: 239 DEGEFTCR 246
+ G + C
Sbjct: 76 NAGPYRCI 83
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 33.0 bits (75), Expect = 0.039
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 28/112 (25%)
Query: 179 GDSVTFECQVQVVPPNDH--DISWFRNN------RLIKLDSDMKPEVQVD---------- 220
G +V C + P + ++W R + + M P
Sbjct: 17 GGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFV 76
Query: 221 ---------SKENLVIARLKIPHVYPEDEGEFTCRVANE-LGEVVTSACLIV 262
++ L A L + + EDEG +TC A G V L V
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 29.2 bits (65), Expect = 0.92
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 123 LEISEVTLEDAGLYTIKVENN-YGSVEATARLEI 155
L + +T+ED G YT + GSV L +
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP:
b.1.1.1 b.1.1.3
Length = 177
Score = 33.2 bits (75), Expect = 0.052
Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 25/136 (18%)
Query: 93 PAPWTSWS-KDGKP----ATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVENNYGSV 147
W ++S K+ K +T N + + E L L+I +V+L+ AG + + + G +
Sbjct: 40 SQSWITFSLKNQKVSVQKSTSNPKFQLSETLPLT-LQIPQVSLQFAGSGNLTLTLDRGIL 98
Query: 148 EATARLEIMDPRAIISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLI 207
L +M + DS T C+V + + N+
Sbjct: 99 YQEVNLVVM------------------KVTQPDSNTLTCEVMGPTSPKMRLILKQENQEA 140
Query: 208 KLDSDMKPEVQVDSKE 223
++ S + +QV + E
Sbjct: 141 RV-SRQEKVIQVQAPE 155
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 32.3 bits (73), Expect = 0.066
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 13/82 (15%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFR--------NNRLIKLD-----SDMKPEVQVDSKENL 225
G VT C + W LI + Q+ +
Sbjct: 12 GHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISE 71
Query: 226 VIARLKIPHVYPEDEGEFTCRV 247
L I + D G + C V
Sbjct: 72 GNVSLTIENTVVGDGGPYCCVV 93
Score = 31.9 bits (72), Expect = 0.074
Identities = 16/98 (16%), Positives = 21/98 (21%), Gaps = 21/98 (21%)
Query: 79 LGDTVRFQCSVTGQPAPWTS--WSKDGKP---------ATPNARVTIREKEDLRF----- 122
G V C + W T VT + +
Sbjct: 11 AGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNIS 70
Query: 123 -----LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
L I + D G Y VE LE+
Sbjct: 71 EGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV 108
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 33.5 bits (76), Expect = 0.068
Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 29/207 (14%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSW------------------SKDGKPATPNARVT 113
P NK+ + G V +C W PN R
Sbjct: 33 PSNKVTEKGKYVELRCDPISG-HTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFF 91
Query: 114 IREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEAT--ARLEIMDPRAIISRPKV-LN 169
E L+I D+ +Y + RL +++ + P+V +
Sbjct: 92 AVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVF 151
Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--LDSDMKPEVQVDSKEN--- 224
T C P+ ++SW+ N + + + +D +P + + +
Sbjct: 152 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRY 211
Query: 225 LVIARLKIPHV-YPEDEGEFTCRVANE 250
+ +RL++ + F C+V
Sbjct: 212 SLSSRLRVSATFWQNPRNHFRCQVQFY 238
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 33.8 bits (76), Expect = 0.075
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 178 DGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYP 237
D V+ C + P D + W N + + + +P + + V ++L +
Sbjct: 288 AKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYF-VYSKLNVQKSNW 346
Query: 238 EDEGEFTCRVANE 250
E FTC V +E
Sbjct: 347 EAGNTFTCSVLHE 359
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 31.8 bits (72), Expect = 0.081
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFR--------NNRLIKLD-----SDMKPEVQVDSKENL 225
G VT C + + + W + N L++ D S + + K
Sbjct: 11 GQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQF 70
Query: 226 VIARLKIPHVYPEDEGEFTCRV 247
L I + D G + CR+
Sbjct: 71 GEVSLTISNTNRGDSGVYCCRI 92
Score = 30.7 bits (69), Expect = 0.20
Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 21/85 (24%)
Query: 79 LGDTVRFQCSVTGQPAPWTS--WSKDGKP---------ATPNARVTIREKEDLRF----- 122
LG V C S W K P T R+ R+
Sbjct: 10 LGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQ 69
Query: 123 -----LEISEVTLEDAGLYTIKVEN 142
L IS D+G+Y ++E
Sbjct: 70 FGEVSLTISNTNRGDSGVYCCRIEV 94
Score = 26.5 bits (58), Expect = 6.6
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 287 LTIEDITGDDSGKYQ 301
LTI + DSG Y
Sbjct: 75 LTISNTNRGDSGVYC 89
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 33.0 bits (75), Expect = 0.082
Identities = 33/202 (16%), Positives = 73/202 (36%), Gaps = 29/202 (14%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSW------------------SKDGKPATPNARVT 113
P + I + G C W + K P+ R +
Sbjct: 9 PRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPS-RFS 66
Query: 114 IREKEDLRF-LEISEVTLEDAGLY---TIKVENNYGSVEATARLEIMDPRAIISRPKV-L 168
+++ +D + +S + LED+ +Y + + RL +++ ++ PKV L
Sbjct: 67 VQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSL 126
Query: 169 NGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--LDSDMKPEVQVDSKENLV 226
+ T C + P+ ++SW+ N + + + +D + + + +L
Sbjct: 127 FEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLS 186
Query: 227 IARLKIPHV-YPEDEGEFTCRV 247
+RL++ + F C+V
Sbjct: 187 -SRLRVSATFWHNPRNHFRCQV 207
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 31.7 bits (72), Expect = 0.087
Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 23/89 (25%)
Query: 80 GDTVRFQCSVTGQPAPWTS------WSKDGKPATP-----NARVTIREKEDLRF------ 122
G + C + S W D + ++ R
Sbjct: 15 GSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNM 74
Query: 123 ------LEISEVTLEDAGLYTIKVENNYG 145
L + ++ ED+G Y + E +
Sbjct: 75 DHKVCNLLLKDLKPEDSGTYNFRFEISDS 103
Score = 28.3 bits (63), Expect = 1.3
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 21/104 (20%)
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQV----VPPNDHDISWFR---NNRLIKLDSDMK 214
+S PK + GL G + C N W+ R + + S
Sbjct: 4 VSSPKNVQGLS------GSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDP 57
Query: 215 PEVQVDSKENLVIAR--------LKIPHVYPEDEGEFTCRVANE 250
V + + L + + PED G + R
Sbjct: 58 KLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 31.5 bits (72), Expect = 0.14
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 34/131 (25%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSW--SKDGKPATPNARVTIREKE 118
++ PRF A V+F C + +W + + P + + E+
Sbjct: 19 QIWQHPRFAAKK------RSSMVKFHCYTNH--SGALTWFRKRGSQQ--P--QELVSEEG 66
Query: 119 DLRF----------LEISEVTLEDAGLYTIKVENNYGSVEATA----RLEIMDPRAIISR 164
R L I + ED G+Y K + + + T L ++ S
Sbjct: 67 --RIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLG----FST 120
Query: 165 PKVLNGLENLR 175
L L+
Sbjct: 121 LDQLKRRNTLK 131
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 32.5 bits (73), Expect = 0.14
Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDLRFL---EISEV 128
N + G FQCS G+ G I+ RF+ +
Sbjct: 171 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNT 230
Query: 129 TLEDAGLYTIKVENNYGS 146
T DAG Y + G
Sbjct: 231 TKRDAGKYRCMIRTEGGV 248
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 30.7 bits (69), Expect = 0.21
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 123 LEISEVTLEDAGLYTIKV-ENNYGSVEATARLEI 155
L I + DAG YT+ V +++ + EAT + +
Sbjct: 74 LLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
Score = 27.6 bits (61), Expect = 2.3
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 234 HVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLN----IITVGGTSVLTI 289
H P+ ++ GE V I+ V G + G II + L I
Sbjct: 23 HNLPQHLFGYSWY----KGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNAS--LLI 76
Query: 290 EDITGDDSGKYQVHVSNQ 307
++I +D+G Y +HV
Sbjct: 77 QNIIQNDAGFYTLHVIKS 94
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 30.6 bits (68), Expect = 0.25
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 179 GDSVTFECQVQVVPPNDHDISW--FRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVY 236
GD EC V+ H ++W +KL+ + ++N+ L V
Sbjct: 26 GDPFELECPVKYCANRPH-VTWCKLNGTTCVKLEDR---QTSWKEEKNISFFILHFEPVL 81
Query: 237 PEDEGEFTCRVANELGEVVTSACLI 261
P D G + C + + + + +
Sbjct: 82 PNDNGSYRCSANFQSNLIESHSTTL 106
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 31.2 bits (71), Expect = 0.30
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDM-KPEVQVDSKENLVIARLKIPHVYP 237
+ T C + P ++W + +K + KP Q ++K + L +
Sbjct: 150 ANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAAS-SYLSLTPEQW 208
Query: 238 EDEGEFTCRVANELGEVVTS 257
+ ++C+V +E V +
Sbjct: 209 KSHRSYSCQVTHEGSTVEKT 228
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 29.9 bits (67), Expect = 0.39
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 179 GDSVTFECQVQV-VPPNDHDISWFRNN-----RLIKLDSDMKPEVQVDSKENLVIAR--- 229
V +C + W + + DS Q + L ++
Sbjct: 16 KGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVP 75
Query: 230 ----LKIPHVYPEDEGEFTCRVANEL 251
L+I + +D +TC V +
Sbjct: 76 GDVSLQINTLQMDDRNHYTCEVTWQT 101
Score = 27.6 bits (61), Expect = 2.5
Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 21/110 (19%)
Query: 71 VPHNKICDLGDTVRFQCSVTGQPAPWTS---WSKDGKPATPNA----------------- 110
P + V+ QC W +
Sbjct: 7 TPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRG 66
Query: 111 RVTIREKEDLRF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEIMDPR 159
R+ + K L+I+ + ++D YT +V R +I++ R
Sbjct: 67 RLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELR 116
Score = 27.2 bits (60), Expect = 3.7
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 274 GRLNIITVGGTSV-LTIEDITGDDSGKYQVHVSNQ 307
GRL + V L I + DD Y V+ Q
Sbjct: 66 GRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQ 100
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 30.0 bits (68), Expect = 0.41
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 20/86 (23%)
Query: 61 RLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKDGKPATPNARVTIREKEDL 120
R+ SPRF A G TV+ C + + K + ++ ++
Sbjct: 20 RIWQSPRFIARK------RGFTVKMHCYMNSASGNVSWLWKQ-EMDE--NPQQLKLEKG- 69
Query: 121 RF----------LEISEVTLEDAGLY 136
R L I + ED G+Y
Sbjct: 70 RMEESQNESLATLTIQGIRFEDNGIY 95
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 31.4 bits (71), Expect = 0.41
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 43 LSSRTFTPYSLNSAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPAPWTSWSKD 102
+R N +R ++ P + + V S PA SW D
Sbjct: 451 AMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLD 510
Query: 103 GKPATPNARVTIREKEDLRFLEISEVTLEDAGLYTIKVE 141
GKP PN + +++ R + GL+T++ E
Sbjct: 511 GKPLVPNEKGVSVKEQTRRH--------PETGLFTLQSE 541
Score = 27.6 bits (61), Expect = 5.9
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNN---RLIKLDSDMKPEVQVDSKENLVIARLKIPHV 235
G+ + +C+ P + W N K+ S L L +P V
Sbjct: 381 GEPLVLKCKGAPKKP-PQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAV 439
Query: 236 YPEDEGEFTCRVANELG-EVVTSACLIVDVVKGK 268
+DEG F C+ N G E ++ + V + GK
Sbjct: 440 GIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGK 473
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 30.9 bits (70), Expect = 0.42
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 5/130 (3%)
Query: 123 LEISEVTLEDAGLYTIKVENNYGSV-EATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
L+IS V ED G+Y +++ A +LE+ A P V +
Sbjct: 115 LKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADA---APTVSIFPPSSEQLTSGG 171
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDM-KPEVQVDSKENLVIARLKIPHVYPEDE 240
+ C + P D ++ W + + + + + L + E
Sbjct: 172 ASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH 231
Query: 241 GEFTCRVANE 250
+TC ++
Sbjct: 232 NSYTCEATHK 241
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 29.7 bits (67), Expect = 0.50
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 55 SAIRTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARV 112
+ + + T + Y+ + G C VT P K+GK
Sbjct: 16 TGLYAIQKTPQIQVYSRHPP---ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMS 72
Query: 113 TIREKEDLRFLEIS--EVTLEDAGLYTIKVE 141
+ +D F ++ E T + Y +V+
Sbjct: 73 DMSFSKDWSFYILAHTEFTPTETDTYACRVK 103
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 29.2 bits (66), Expect = 0.55
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 78 DLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEIS--EVTLEDA 133
G C G P + + KDG P + +D F + + T
Sbjct: 16 SAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSG 75
Query: 134 GLYTIKVE 141
Y KVE
Sbjct: 76 STYACKVE 83
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 29.3 bits (65), Expect = 0.60
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 98 SWSKDGKPATPNARVTIR---EKEDLRFLEISEVTLEDAGLYTIKVENNYGSV 147
+W + P+ N + + D L I L+D+G Y +++ N G V
Sbjct: 51 NW-YNDGPSWSNVSFSDIYGFDYGDFA-LSIKSAKLQDSGHYLLEITNTGGKV 101
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 28.9 bits (65), Expect = 0.71
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 78 DLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEIS--EVTLEDA 133
+ G C VT P K+GK + +D F ++ E T +
Sbjct: 16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTET 75
Query: 134 GLYTIKVE 141
Y +V+
Sbjct: 76 DTYACRVK 83
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 29.5 bits (66), Expect = 0.78
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 29/107 (27%)
Query: 80 GDTVRFQCSVTGQPAPWTS-------WSKDGKPATPNARV-------TIREKEDLRF--- 122
G V +CS + T W + G + A V ++E+ RF
Sbjct: 21 GMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLL 80
Query: 123 ---------LEISEVTLEDAGLYTIKVEN---NYGSVEATARLEIMD 157
L I + + DAG Y ++E + + +
Sbjct: 81 GDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTA 127
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 30.0 bits (67), Expect = 0.84
Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 29/204 (14%)
Query: 72 PHNKICDLGDTVRFQCSVTGQPAPWTSW------------------SKDGKPATPNARVT 113
P G V C W + K
Sbjct: 10 PKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSV 68
Query: 114 IREKEDLRFLEISEVTLEDAGLY---TIKVENNYGSVEATARLEIMDPRAIISRPKV-LN 169
REK++ L ++ Y + + RL + + + P+V +
Sbjct: 69 SREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVF 128
Query: 170 GLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIK--LDSDMKPEVQVDSKENLVI 227
T C P+ ++SW+ N + + + +D +P + + +
Sbjct: 129 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRY 188
Query: 228 A---RLKIPHV-YPEDEGEFTCRV 247
+ RL++ + F C+V
Sbjct: 189 SLSSRLRVSATFWQNPRNHFRCQV 212
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 28.9 bits (65), Expect = 1.0
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Query: 71 VPHNKICDLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEIS-- 126
V G C G P + + KDG P + +D F +
Sbjct: 29 VYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHA 88
Query: 127 EVTLEDAGLYTIKVE 141
+ T Y KVE
Sbjct: 89 DFTPSSGSTYACKVE 103
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.9 bits (62), Expect = 1.9
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 19/96 (19%)
Query: 79 LGDTVRFQCSVTG------------QPAPWTSW-----SKDGKPATPNARVTIRE-KEDL 120
G++V C + S+ + R + E+
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 121 RF-LEISEVTLEDAGLYTIKVENNYGSVEATARLEI 155
F + I++++ +D+G Y + N + LE+
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 27.7 bits (62), Expect = 1.9
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 10/96 (10%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFR------NNRLIKLDSDMKPEVQVDSKENLVIARLKI 232
G+S+T C ++ W+R N I V+S L+I
Sbjct: 15 GESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYV--ETVNSGSKSF--SLRI 70
Query: 233 PHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGK 268
+ ED G + C + G + C G
Sbjct: 71 NDLTVEDGGTYRCGLGVAGGYCDYALCSSRYAECGD 106
Score = 27.0 bits (60), Expect = 4.4
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 24/74 (32%)
Query: 80 GDTVRFQCSVTG--QPAPWTSW-------------SKDGKPATPNARVTI-REKEDLRF- 122
G+++ C + T W SK G R F
Sbjct: 15 GESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGG-------RYVETVNSGSKSFS 67
Query: 123 LEISEVTLEDAGLY 136
L I+++T+ED G Y
Sbjct: 68 LRINDLTVEDGGTY 81
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 27.7 bits (61), Expect = 2.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 265 VKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGKYQVHVSNQHGS 310
K K G I+ G L I+++T DDSG Y V V + +G+
Sbjct: 42 FKRKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYSTNGT 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.1
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 204 NRLIKLDSDMK---PEVQVDSKENLVI-ARLK 231
L KL + +K DS L I A ++
Sbjct: 20 QALKKLQASLKLYAD----DSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 2.6
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 18/35 (51%)
Query: 60 RRLTSSPRFYAVPHNKICDLGDTVRFQCSVTGQPA 94
++L +S + YA D+ PA
Sbjct: 23 KKLQASLKLYA-D--------DSA---------PA 39
Score = 27.6 bits (60), Expect = 3.9
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 9/36 (25%)
Query: 116 EKEDLRFLEISEVTL---EDAGLYTIKVENNYGSVE 148
EK+ L+ L+ + + L + A IK ++E
Sbjct: 18 EKQALKKLQ-ASLKLYADDSAPALAIK-----ATME 47
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.0 bits (62), Expect = 2.1
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 20/98 (20%)
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRNN------RLIKLDSDMKP 215
S+ +VL + G ++T CQ W + RL+
Sbjct: 14 QSKAQVLQSVA------GQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTM 67
Query: 216 E------VQVDSKENLVIARLKIPHVYPEDEGEFTCRV 247
+ D + + + ED G + CR+
Sbjct: 68 AWTSRFTIWDDPDAGFFT--VTMTDLREEDSGHYWCRI 103
Score = 26.9 bits (59), Expect = 4.3
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 18/76 (23%)
Query: 79 LGDTVRFQC--SVTGQPAPWTSWSKDGKPATP--------------NARVTIREKEDLRF 122
G T+ +C TG W K+ +R TI + D F
Sbjct: 24 AGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGF 83
Query: 123 --LEISEVTLEDAGLY 136
+ ++++ ED+G Y
Sbjct: 84 FTVTMTDLREEDSGHY 99
Score = 26.1 bits (57), Expect = 8.4
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 273 DGRLNII--TVGGTSVLTIEDITGDDSGKYQVHVSNQHGSDSCYASVAVE 320
R I G +T+ D+ +DSG Y + +S SV
Sbjct: 70 TSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYR-PSDNSVSKSVRFY 118
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 27.9 bits (62), Expect = 2.1
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 21/78 (26%)
Query: 80 GDTVRFQCSVTGQP-----------APW--------TSWSKDGKPATPNARVTI-REKED 119
G T+ +C T + T R+ + +
Sbjct: 19 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH 78
Query: 120 LRF-LEISEVTLEDAGLY 136
+ + + +ED+GLY
Sbjct: 79 GLLRVRMVNLQVEDSGLY 96
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 27.3 bits (61), Expect = 2.2
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 78 DLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEIS--EVTLEDA 133
+ G C V+G P + K+G+ + + ++ +F E +
Sbjct: 16 EYGKENTLICYVSGFHPPDISIELLKNGEVIADAQQTDLAFEKGWQFHLTKSVSFKPEKS 75
Query: 134 GLYTIKVE 141
Y+ V
Sbjct: 76 DEYSCSVR 83
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 2.4
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 15/57 (26%)
Query: 50 PYSLNSAIRTRRLTSSPRFYAVPHNKI--CDLGDTVRFQCSVTGQPAPWTSWSKDGK 104
P+ N AI +P N+I + D V T W K
Sbjct: 170 PFE-NIAIE------------LPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISK 213
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 28.4 bits (63), Expect = 2.7
Identities = 30/189 (15%), Positives = 51/189 (26%), Gaps = 25/189 (13%)
Query: 79 LGDTVRFQCSVT-------------GQPAPWTSWSKDGKPATPNARVTIREKEDLRF-LE 124
G +C+ T + G + KE L
Sbjct: 15 EGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLH 74
Query: 125 ISEVTLEDAGLY---TIKVENNYGSVEATARLEIMDPRAIISRPKVLNGLENLRCCDGDS 181
I + LED+G Y + G T +L + PK + +
Sbjct: 75 IRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKNG 134
Query: 182 VTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIPHVYPEDEG 241
C V+ P + IS + +++ + D + K + V D
Sbjct: 135 TNVACLVKDFYPKEVTISLRSSKKIV--EFDPAIVISPSGKYSAVKL------GQYGDSN 186
Query: 242 EFTCRVANE 250
TC V +
Sbjct: 187 SVTCSVQHN 195
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 28.2 bits (62), Expect = 3.2
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 58 RTRRLTSSPRFYAVPHNKICDLGDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIR 115
+ P + + G C V+ P T +W P +
Sbjct: 93 KIPVSRGFPIAEVFTLKPL-EFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVEGFGPTFVS 151
Query: 116 EKEDLRFLEIS--EVTLEDAGLYTIKVE 141
+ L F S T E + +++ V
Sbjct: 152 AVDGLSFQAFSYLNFTPEPSDIFSCIVT 179
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 27.4 bits (61), Expect = 3.4
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFR------NNRLIKLDSDMKPEVQVDSKENLVIARLKI 232
G+S+T C ++ D W+R N + I + V SK L+I
Sbjct: 15 GESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKS----FSLRI 70
Query: 233 PHVYPEDEGEFTCRV 247
+ ED G + C+
Sbjct: 71 SDLRVEDSGTYKCQA 85
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 27.1 bits (60), Expect = 3.6
Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 15/82 (18%)
Query: 79 LGDTVRFQCSVTGQPAPWTSW-------------SKDGKPATPNARVTIREKEDLRFL-- 123
+G ++ QC Q S P R T L
Sbjct: 11 VGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQV 70
Query: 124 EISEVTLEDAGLYTIKVENNYG 145
E+ + EDAG Y V+ G
Sbjct: 71 EMVTLQEEDAGEYGCMVDGARG 92
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 28.0 bits (62), Expect = 3.9
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 17/79 (21%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNN------RLIKLDSDMKPE------VQVDSKENLV 226
+ V C + D+ I W+R +I + + D K
Sbjct: 14 EEPVHLPCNHSTISGTDY-IHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKS--- 69
Query: 227 IARLKIPHVYPEDEGEFTC 245
+ L + D + C
Sbjct: 70 -STLILHRATLRDAAVYYC 87
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Length = 977
Score = 28.3 bits (63), Expect = 4.3
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 122 FLEISEVTLEDAGLY---TIKVENNYGSVEATARL-EIMDPRAIISRPK 166
F E+SE G+ + +E+ G + A A + + + P AI +
Sbjct: 881 FCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQV 929
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 27.6 bits (61), Expect = 4.4
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNN------RLIKLDSDMKP------EVQVDSKENLV 226
G+++ C + + WFR + L+ + S + +D
Sbjct: 15 GENLVLNCSFTDSAIYN--LQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRS 72
Query: 227 IARLKIPHVYPEDEGEFTCRVANELG 252
L I P D + C V G
Sbjct: 73 --TLYIAASQPGDSATYLCAVRPTSG 96
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase;
1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A
3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Length = 155
Score = 27.1 bits (60), Expect = 4.7
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 180 DSVTFECQVQVVPPNDHDISW 200
D VTFE VQ P H ++W
Sbjct: 137 DKVTFEVFVQADAP--HGVAW 155
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 28.1 bits (62), Expect = 4.8
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 176 CCDGDSVTFECQVQVVPPNDHD--ISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLKIP 233
+ C V + +D + SWF ++ + E Q +S ++ L I
Sbjct: 355 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFR-SVSELPIM 413
Query: 234 HVYPEDEGEFTCRVANE 250
H + EF CRV +
Sbjct: 414 HQDWLNGKEFKCRVNSA 430
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 27.8 bits (61), Expect = 4.9
Identities = 9/116 (7%), Positives = 28/116 (24%), Gaps = 1/116 (0%)
Query: 172 ENLRCCDGDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENLVIARLK 231
+++ C + C + D ++ LD ++ + + + R
Sbjct: 141 QDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFP 200
Query: 232 IPHVYPEDEGEFTCRVANELGEVVTSACLIVDVVKGKDLTSDGRLNIITVGGTSVL 287
+ ++E + S+ + L +
Sbjct: 201 YLEASDYKDFYICVNGSSENKP-IRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIK 255
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 27.2 bits (61), Expect = 5.8
Identities = 2/18 (11%), Positives = 6/18 (33%)
Query: 181 SVTFECQVQVVPPNDHDI 198
+ + Q + D+
Sbjct: 163 GIAYSFQKGDFLADPWDV 180
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: 2PE; 1.70A
{Silicibacter SP}
Length = 235
Score = 27.2 bits (60), Expect = 5.8
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 245 CRVANELGEVVTSACLIVDVVKGK--DLTSDGRLNIITVGGTSVLTIEDITGDD 296
+A+ +GE T G + D + + T ++ + + D
Sbjct: 187 RGLAHGMGEART-----EAGRSGTFLGVDEDFGMLLRDETTTHLIPLTTVLVQD 235
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 26.2 bits (58), Expect = 6.3
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 17/75 (22%)
Query: 79 LGDTVRFQCSVTG----------QPAPWTS-----WSKDGKPATPNARVTIR-EKEDLRF 122
++ QC T Q P S + + RV+IR + D F
Sbjct: 15 EQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIF 74
Query: 123 -LEISEVTLEDAGLY 136
+ + ++ + DAG+Y
Sbjct: 75 TVTMEDLRMSDAGIY 89
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 26.8 bits (60), Expect = 7.1
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 265 VKGKDLTSDGRLNIITVGGTSVLTIEDITGDDSGK 299
V+ D R+ G V E++ DD G
Sbjct: 107 VRKTDNN---RIARAC-GARIVSRPEELREDDVGT 137
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 27.5 bits (61), Expect = 7.3
Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 29/151 (19%)
Query: 179 GDSVTFECQVQVVPPNDHDISWFRNNRLIKLDSDMKPEVQVDSKENL--------VIARL 230
D VT C P D ++W N + D ++ E A +
Sbjct: 196 EDKVTLRCWALGFYPADITLTWQLNGEELIQD--------MELVETRPAGDGTFQKWASV 247
Query: 231 KIPHVYPEDEGEFTCRVANE-LGEVVT-------SACLIVDVVKGKDLTSDGRLNIITVG 282
+P E +TC V ++ L E +T S + V + + V
Sbjct: 248 VVP---LGKEQYYTCHVYHQGLPEPLTLRWEPPPSTVSNMATVAVLVVLG-AAIVTGAVV 303
Query: 283 GTSVLTIEDITGDDSGKYQVHVSNQHGSDSC 313
+ TG G Y + +Q SD
Sbjct: 304 AFVMKMRRRNTGGKGGDYALAPGSQ-TSDLS 333
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 26.3 bits (58), Expect = 7.8
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 21/78 (26%)
Query: 80 GDTVRFQCSVTGQP-----------APW--------TSWSKDGKPATPNARVTI-REKED 119
G T+ +C T + T R+ + +
Sbjct: 14 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH 73
Query: 120 LRF-LEISEVTLEDAGLY 136
+ + + +ED+GLY
Sbjct: 74 GLLRVRMVNLQVEDSGLY 91
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 26.9 bits (60), Expect = 7.9
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 80 GDTVRFQCSVTG-QPAPWT-SWSKDGKPATPNARVTIREKEDLRFLEISEVTL-----ED 132
+ C ++ P+ T +W +G P T + KE +F+ S + L
Sbjct: 136 ENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRS 195
Query: 133 AGLYTIKVENNYGSVEAT 150
+T +V + +VE +
Sbjct: 196 HNSFTCQVTHEGDTVEKS 213
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 26.4 bits (58), Expect = 8.0
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
Query: 162 ISRPKVLNGLENLRCCDGDSVTFECQVQVVPPNDHDISWFRN------NRLIKLDSDMKP 215
I+ P +NGLE S+T +C + + W R L+K +
Sbjct: 6 ITGPTTVNGLE------RGSLTVQCVYRSGW-ETYLKWWCRGAIWRDCKILVKTSGSEQE 58
Query: 216 EVQ-----VDSKENLVIARLKIPHVYPEDEGEFTCRVANELGEVVTSACLIVD 263
+ D+++N + + + D + C + ++ + + +D
Sbjct: 59 VKRDRVSIKDNQKNRTF-TVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTID 110
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 26.3 bits (57), Expect = 8.5
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 131 EDAGLYTI--KVENNYGSVEATARLEIMDPRA 160
E G+Y + + EN G EA +++ P +
Sbjct: 91 ESPGIYRVSVRAENTAGHDEAVLFVQVSGPSS 122
>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold,
polymorphism, secreted, hormone; 2.50A {Homo sapiens}
Length = 211
Score = 26.7 bits (58), Expect = 9.0
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 12 SVKLTRPSGLMSGHSTPRSTPRSTPPRSISPLSSRTFTPYSLNSAIRTRRLTSSPRFY 69
S L P+G R + R L+ +R R+L F+
Sbjct: 23 SHFLLPPAGERPPLLGERRSAAERSARG----GPGAAQLAHLHGILRRRQLYCRTGFH 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.388
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,946,982
Number of extensions: 300132
Number of successful extensions: 2896
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1785
Number of HSP's successfully gapped: 852
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)