BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10953
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 113/205 (55%), Gaps = 51/205 (24%)
Query: 2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
KQI I+ GPVD W + FSPD +Y+ +G+ GK+N++GVE+GK E DTRGKF LSIAY
Sbjct: 113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 172
Query: 62 STDGHWIASGALDGIINIFDANT------------------------------------- 84
S DG ++ASGA+DGIINIFD T
Sbjct: 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
Query: 85 -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQ 130
GH+SWVL+ AF D F+S+S+D +V+VW+ R +HT F H DQ
Sbjct: 233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 292
Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
VW V +G K VSVG+D+ +H+Y
Sbjct: 293 VWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 28 SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS 87
S S I L+ +E GK + D ++A+S D ++A+G G +NIF +G
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156
Query: 88 SW--------VLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP 138
+ +LS A++ DGK+ S + D + +++ A + +HT + HA + + +P
Sbjct: 157 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 216
Query: 139 DGDKFVSVGEDKAVHMY 155
D V+ +D + +Y
Sbjct: 217 DSQLLVTASDDGYIKIY 233
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
+W V FSPDD+ + S S + L+ G+L Q +A+S DG IAS +
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 487
Query: 74 DGIINIFDAN-------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
D + +++ N TGHSS V AF+ DG+ SAS D TV++WN +
Sbjct: 488 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 547
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+ VW V +PDG S DK V ++
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
+W V FSPD + + S S + L+ G+L Q +A+S DG IAS +
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 118
Query: 74 DGIINIFDAN-------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
D + +++ N TGHSS V AF+ DG+ SAS D TV++WN +
Sbjct: 119 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 178
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+ VW V +PDG S +DK V ++
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
+K+ +++ + V FSPD + + S S + L+ G+L Q +A
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 64
Query: 61 YSTDGHWIASGALDGIINIFDAN-------TGHSSWVLSTAFTRDGKFFISASADHTVRV 113
+S DG IAS + D + +++ N TGHSS V AF+ DG+ SAS D TV++
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 124
Query: 114 WNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
WN + H+ VW V +PDG S +DK V ++
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI 76
V FSPD + + S S + L+ G+L Q +A+ DG IAS + D
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT 285
Query: 77 INIFDAN-------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD 129
+ +++ N TGHSS V AF+ DG+ SAS D TV++WN + H+
Sbjct: 286 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345
Query: 130 QVWCVCVAPDGDKFVSVGEDKAVHMY 155
VW V +PDG S +DK V ++
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
+W V FSPD + + S S + L+ G+ Q +A+S DG IAS +
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD 364
Query: 74 DGIINIFDAN-------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
D + +++ N TGHSS V AF+ DG+ SAS D TV++WN +
Sbjct: 365 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 424
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+ VW V +PD S +DK V ++
Sbjct: 425 HSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
+W V FSPD + + S S + L+ G+L Q +A+S DG IAS +
Sbjct: 142 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 200
Query: 74 DGIINIFDAN-------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
D + +++ N TGHSS V AF+ DG+ SAS D TV++WN +
Sbjct: 201 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 260
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+ V V PDG S +DK V ++
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI 76
V FSPD + + S S + L+ G+L Q +A+S D IAS + D
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449
Query: 77 INIFDAN-------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD 129
+ +++ N TGHSS V AF+ DG+ SAS D TV++WN + H+
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 509
Query: 130 QVWCVCVAPDGDKFVSVGEDKAVHMY 155
V V +PDG S +DK V ++
Sbjct: 510 SVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI 76
V FSPD + + S S + L+ G+L Q +A+S DG IAS + D
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 77 INIFDAN-------TGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
+ +++ N TGHSS V AF+ DG+ SAS+D TV++WN
Sbjct: 532 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSPD K++ +G++ I ++ +E K+ I + S+ Y G + SG+ D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 76 IINIFDANTGHSSWVLS--------TAFTRDGKFFISASADHTVRVWN-----FARR--- 119
+ I+D TG S LS DGK+ + S D VRVW+ R
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 120 ENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
EN H D V+ V DG VS D++V +++ +
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
D++++ + P ++SGS + ++ + TG+ T DG +IA+G+
Sbjct: 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 73 LDGIINIFDANTG---------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFA 117
LD + ++D+ TG H V S FTRDG+ +S S D +V++WN
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
Query: 118 RRENMHTFKHADQVWC 133
N K + C
Sbjct: 287 NANNKSDSKTPNSGTC 302
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 56 TLSIAYSTDGHWIASGALDGIINIFDANTGHSS------WVLSTAFTRDGKFFISASADH 109
T + +DG +A + D N N SS ++ S F+ DGKF + + D
Sbjct: 86 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145
Query: 110 TVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
+R+W+ R+ + + H ++ + P GDK VS D+ V ++ +
Sbjct: 146 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 26/131 (19%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVE------------TGKLEQIFDTRGKFTLSIAY 61
+++VVF+ D + V+SGS + L+ ++ +G E + F LS+A
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318
Query: 62 STDGHWIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKF------FISASA 107
+ + +I SG+ D + +D + GH + V+S A F + S
Sbjct: 319 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378
Query: 108 DHTVRVWNFAR 118
D R+W + +
Sbjct: 379 DCKARIWKYKK 389
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+VV S D ++ LSGS G + L+ + TG + F K LS+A+S+D I SG+ D
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 76 IINIFDA---------NTGHSSWVLSTAFTRDGK--FFISASADHTVRVWNFAR-RENMH 123
I +++ + HS WV F+ + +S D V+VWN A + +
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210
Query: 124 TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H + V V+PDG S G+D ++
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 55 FTLSIAYSTDGHWIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISAS 106
F + S+DG + SG+ DG + ++D T GH+ VLS AF+ D + +S S
Sbjct: 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 107 ADHTVRVWNF--ARRENMHTFKHADQVWCVCVAPDGDK--FVSVGEDKAVHMYS 156
D T+++WN + + H++ V CV +P+ VS G DK V +++
Sbjct: 148 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
GHS +V + DG+F +S S D T+R+W+ F H V V + D +
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 144 VSVGEDKAVHMYS 156
VS DK + +++
Sbjct: 144 VSGSRDKTIKLWN 156
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA---- 72
V SPD SG + G+ L+ + GK D G ++ +S + +W+ +
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSI 279
Query: 73 ----LDGII--------NIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
L+G I I ++ S A++ DG+ + D+ VRVW
Sbjct: 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 85 GHSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFK------HADQVWCVCVA 137
GH+ WV A T +SAS D T+ +W R E + H+ V V ++
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95
Query: 138 PDGDKFVSVGEDKAVHMY 155
DG +S D + ++
Sbjct: 96 SDGQFALSGSWDGTLRLW 113
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+VV S D ++ LSGS G++ L+ + G + F K LS+A+S D I S + D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR 494
Query: 76 IINIF-----------DANTGHSSWVLSTAFTRD--GKFFISASADHTVRVWNFARRENM 122
I ++ + GH WV F+ + +SAS D TV+VWN + +
Sbjct: 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
T H V V V+PDG S G+D V ++
Sbjct: 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 11 PVDMWNVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIA 69
P+D +++ S DK ++ + YGV +L F + S+DG +
Sbjct: 391 PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG----HSHFVEDVVLSSDGQFAL 446
Query: 70 SGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN 121
SG+ DG + ++D GH+ VLS AF+ D + +SAS D T+++WN E
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGEC 505
Query: 122 MHTFK-----HADQVWCVCVAPDGDK--FVSVGEDKAVHMYS 156
+T H D V CV +P+ + VS DK V +++
Sbjct: 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 31/130 (23%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTL-SIAYSTDGHWIASGALDG 75
V SPD SG + G + L+ + GK +++ + ++ +S + +W+ + G
Sbjct: 567 VAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEANSVIHALCFSPNRYWLCAATEHG 624
Query: 76 IINIFDA---------------------NTGHSS------WVLSTAFTRDGKFFISASAD 108
I I+D N+G ++ + S ++ DG S D
Sbjct: 625 I-KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683
Query: 109 HTVRVWNFAR 118
+RVW R
Sbjct: 684 GVIRVWGIGR 693
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+VV S D ++ LSGS G + L+ + TG + F K LS+A+S+D I SG+ D
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 76 IINIFDA---------NTGHSSWVLSTAFTRDGK--FFISASADHTVRVWNFAR-RENMH 123
I +++ + HS WV F+ + +S D V+VWN A + +
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 187
Query: 124 TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H + V V+PDG S G+D ++
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 19/153 (12%)
Query: 21 PDDKYVLSGSQSGKINLYGV---ET--GKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
PD +LS S+ I ++ + ET G ++ F + S+DG + SG+ DG
Sbjct: 28 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF--ARRENMHTF 125
+ ++D T GH+ VLS AF+ D + +S S D T+++WN + +
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 145
Query: 126 KHADQVWCVCVAPDGDK--FVSVGEDKAVHMYS 156
H++ V CV +P+ VS G DK V +++
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA---- 72
V SPD SG + G+ L+ + GK D G ++ +S + +W+ +
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSI 256
Query: 73 ----LDGII--------NIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
L+G I I ++ S A++ DG+ + D+ VRVW
Sbjct: 257 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 85 GHSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRE 120
GH+ WV A T +SAS D T+ +W R E
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE 49
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 34 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 82
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 83 SNLLVSASDDKTLKIW 98
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 114 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 233
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 234 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 266
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 27 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 86
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 87 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 146
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 147 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 154 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 274 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 75
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 76 SNLLVSASDDKTLKIW 91
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 28 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 76
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 77 SNLLVSASDDKTLKIW 92
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 230
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 231 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 263
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 24 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 83
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 84 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 143
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 151 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 271 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 72
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 73 SNLLVSASDDKTLKIW 88
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 28 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 76
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 77 SNLLVSASDDKTLKIW 92
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 34 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 82
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 83 SNLLVSASDDKTLKIW 98
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 251
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 252 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 284
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 45 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 104
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 105 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 164
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 165 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 172 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 292 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 93
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 94 SNLLVSASDDKTLKIW 109
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 34 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 82
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 83 SNLLVSASDDKTLKIW 98
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 235
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 236 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 268
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 29 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 88
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 89 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 148
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 149 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 156 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 276 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 77
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 78 SNLLVSASDDKTLKIW 93
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 239
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 240 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 272
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 33 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 92
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 93 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 152
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 153 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 160 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 280 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 81
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 82 SNLLVSASDDKTLKIW 97
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 256
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 50 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 109
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 110 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 169
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 170 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 177 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 98
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 99 SNLLVSASDDKTLKIW 114
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 259 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 291
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 52 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 111
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 112 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 171
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 172 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 179 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 299 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 100
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 101 SNLLVSASDDKTLKIW 116
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 31 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-K 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 150
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + +Y
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 79
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 31 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-K 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 150
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 79
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TGK + ++ ++ DG I S + DG+
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ + S I ++G GK E+ +A+S+D + + S + D
Sbjct: 31 SVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-K 126
+ I+D ++ GHS++V F +S S D +VR+W+ + + T
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 150
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ ++SAD +++W F + + H +D W + D
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 79
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TG + ++ ++ DG I S + DG+
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+T+++W++++ + + T+ H
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 31 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + T
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 79
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V FSP+ +++ S S I ++G GK E+ +A+S+D + + S + D
Sbjct: 31 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 76 IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ I+D ++ GHS++V F +S S D +VR+W+ + T
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+D V V DG VS D ++
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 75/153 (49%), Gaps = 13/153 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F+P ++SGS + ++ V+TG + ++ ++ DG I S + DG+
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 79 IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
I+D +G L F+ +GK+ ++A+ D+ +++W++++ + + T+ H
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK 237
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
++ +C+ G VS ED V++++ +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V F+ D ++S S G ++ +G+ L+ + D + +S +G +I + LD
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 76 IINIFDAN--------TGHSS---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ ++D + TGH + + + GK+ +S S D+ V +WN +E +
Sbjct: 218 DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 125 FK-HADQVWCVCVAPDGDKFVSVG--EDKAVHMY 155
+ H D V P + S DK + ++
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMHTFKHADQVWCVCVAPD 139
GH+ V S F+ +G++ S+SAD +++W F + + H +D W + D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW----SSD 79
Query: 140 GDKFVSVGEDKAVHMY 155
+ VS +DK + ++
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 60 AYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTV 111
+S DG IAS D + +F A TG H VL AF+ D +F + S D V
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 112 RVWNFARRENMHTF-KHADQVWCV 134
++WN E +HT+ +H++QV C
Sbjct: 688 KIWNSMTGELVHTYDEHSEQVNCC 711
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
+++ +I ++ FS DD+++ + S K+ ++ TG+L +D + +
Sbjct: 654 EKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHF 713
Query: 62 STDGH--WIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTV 111
+ H +A+G+ D + ++D N GH++ V F+ D K S SAD T+
Sbjct: 714 TNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTL 773
Query: 112 RVWN 115
++W+
Sbjct: 774 KLWD 777
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 4 ISKINVGPVD--MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF--TLSI 59
+S++ V P +++ FS D + + S + ++ ETG E++ + + L
Sbjct: 612 LSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETG--EKLLEIKAHEDEVLCC 669
Query: 60 AYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISA--SADH 109
A+STD +IA+ ++D + I+++ TG HS V FT + A S+D
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 110 TVRVWNFARRENMHT-FKHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
+++W+ ++E +T F H + V +PD S D + ++
Sbjct: 730 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSI--------------AYSTD 64
FSPDDK + S S G + L+ + + + + +F L++ ++S D
Sbjct: 757 FSPDDKLLASCSADGTLKLWDATSANERKSINVK-QFFLNLEDPQEDMEVIVKCCSWSAD 815
Query: 65 GHWIASGALDGIINIFDANT---------GHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
G I A + I +FD +T GH S + F+ + A + + V +WN
Sbjct: 816 GARIMVAAKNKIF-LFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN 874
Query: 116 FARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
R + + H V V +PDG F++ +D+ + ++ K
Sbjct: 875 TDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
+W++ F+ D+K ++S S +I ++ + K IF + T+ + S +
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKC--IFLRGHQETVKDFRLLKNSRLLSWSF 1069
Query: 74 DGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF 125
DG + +++ TG H VLS + D F S SAD T ++W+F +H
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHEL 1129
Query: 126 K-HADQVWCVCVAPDGDKFVSVGED 149
+ H V C + D ++ G+D
Sbjct: 1130 RGHNGCVRCSAFSVDS-TLLATGDD 1153
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 26 VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT- 84
+LS S G + ++ + TG E+ F LS S D +S + D I+ +
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 85 -------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF---------KHA 128
GH+ V +AF+ D + + +R+WN + E +H H
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Query: 129 DQVWCVCVAPDGDKFVSVG 147
V +C +PDG +S G
Sbjct: 1184 GWVTDLCFSPDGKMLISAG 1202
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI 76
SP +Y+ G ++G I + + ++ Q K I ++ D + S + D
Sbjct: 973 CCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAE 1032
Query: 77 INIFDANT-------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHA 128
I +++ GH V ++ + +S S D TV+VWN F H
Sbjct: 1033 IQVWNWQLDKCIFLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQ 1091
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
V ++ D KF S DK ++S+
Sbjct: 1092 GTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 29/129 (22%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
FS D + +G +G+I ++ V G+L L S +G
Sbjct: 1141 FSVDSTLLATGDDNGEIRIWNVSNGEL---------LHLCAPLSEEG------------- 1178
Query: 79 IFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVA 137
H WV F+ DGK ISA ++ WN E+ TF + + + V+
Sbjct: 1179 ----AATHGGWVTDLCFSPDGKMLISAGG--YIKWWNVVTGESSQTFYTNGTNLKKIHVS 1232
Query: 138 PDGDKFVSV 146
PD +V+V
Sbjct: 1233 PDFKTYVTV 1241
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-----LSIAYSTDGHW 67
D+ +V FSPD++ ++SG + + ++ V+ + + +RG T + + S D
Sbjct: 111 DVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL--SRGAHTDWVSCVRFSPSLDAPV 168
Query: 68 IASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR 119
I SG D ++ ++D TG H+++V S + DG S+ D R+W+ +
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 120 ENMHTFKHADQVWCVCVAPD 139
E + + +C +P+
Sbjct: 229 EALSEMAAGAPINQICFSPN 248
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V S + + +S S + L+ ++ G+ + F K LS+A+S D I SG D
Sbjct: 72 DVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDN 131
Query: 76 IINIFD---------ANTGHSSWVLSTAFTR--DGKFFISASADHTVRVWNFARRENMHT 124
+ +++ + H+ WV F+ D +S D+ V+VW+ A +
Sbjct: 132 ALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD 191
Query: 125 FK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
K H + V V V+PDG S +D ++
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
GHS++V A + +G F +SAS DH++R+WN + + F H V V +PD +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 144 VSVGEDKAVHMYSYK 158
VS G D A+ +++ K
Sbjct: 125 VSGGRDNALRVWNVK 139
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
+V SPD S + G L+ + G+ L ++ G I +S + +W+ +
Sbjct: 201 SVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM--AAGAPINQICFSPNRYWMCAATEK 258
Query: 75 GIINIFD------------ANTGHSSWV---LSTAFTRDGKFFISASADHTVRVWNFAR 118
GI IFD + G V +S A++ DG S D+ +RVW +
Sbjct: 259 GI-RIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 60 AYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTV 111
+S DG IAS D + +F A TG H VL AF+ D + + SAD V
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 112 RVWNFARRENMHTF-KHADQVWCV 134
++W+ A + +HT+ +H++QV C
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCC 705
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI--F 80
D +LS S G + ++ V TG++E+ F LS A S+D +S + D I F
Sbjct: 1055 DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Query: 81 DANT------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH----------T 124
D + GH+ V +AF+ DG + + +R+WN + + +H T
Sbjct: 1115 DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174
Query: 125 FKHADQVWCVCVAPDGDKFVSVG 147
H V VC +PD VS G
Sbjct: 1175 ATHGGWVTDVCFSPDSKTLVSAG 1197
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 1 MKQISKINVGPVD--MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF--T 56
+K +S++ V P +++ FS D + + S + ++ ETG E++ D +
Sbjct: 603 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEV 660
Query: 57 LSIAYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISA--S 106
L A+S+D +IA+ + D + I+D+ TG HS V FT + A S
Sbjct: 661 LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Query: 107 ADHTVRVWNFARRENMHT-FKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
D +++W+ ++E +T F H + V +PD + S D + ++ +
Sbjct: 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH--WIASGALDGI 76
FS DD Y+ + S K+ ++ TGKL +D + ++ + +A+G+ D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 77 INIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMH 123
+ ++D N GH++ V F+ D + S SAD T+R+W N + N+
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Query: 124 TFKHADQ---------VWCVCVAPDGDKFVSVGEDKAV 152
F + + V C + DGDK + ++K +
Sbjct: 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
++ F+ D K ++S S+ I ++ +TG + +F + T+ + S + DG
Sbjct: 1008 HIQFTADGKTLISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDSRLLSWSFDG 1065
Query: 76 IINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ +++ TG H VLS A + D F S SAD T ++W+F +H K
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1125
Query: 127 HADQVWCVCVAPDGDKFVSVGED 149
H V C + DG ++ G+D
Sbjct: 1126 HNGCVRCSAFSLDG-ILLATGDD 1147
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+VVF ++ VL+ + L +TG+++ + + + S ++A G DG
Sbjct: 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDG 983
Query: 76 IINI--------FDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
I I F + GH V FT DGK IS+S D ++VWN
Sbjct: 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLS--------------IAYSTD 64
FSPDD+ + S S G + L+ V + + + + +F LS ++S D
Sbjct: 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVK-RFFLSSEDPPEDVEVIVKCCSWSAD 809
Query: 65 GHWIASGALDGIINIFDANT---------GHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
G I A + ++ +FD +T GH S + F+ + A + + V +WN
Sbjct: 810 GDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868
Query: 116 FARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
R + + H V V +PDG F++ +D+ + ++ K
Sbjct: 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 28/129 (21%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
FS D + +G +G+I ++ V +DG + S A I+
Sbjct: 1135 FSLDGILLATGDDNGEIRIWNV----------------------SDGQLLHSCA---PIS 1169
Query: 79 IFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVA 137
+ + H WV F+ D K +SA ++ WN A ++ TF + + + V+
Sbjct: 1170 VEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGDSSQTFYTNGTNLKKIHVS 1227
Query: 138 PDGDKFVSV 146
PD +V+V
Sbjct: 1228 PDFRTYVTV 1236
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 60 AYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTV 111
+S DG IAS D + +F A TG H VL AF+ D + + SAD V
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 112 RVWNFARRENMHTF-KHADQVWCV 134
++W+ A + +HT+ +H++QV C
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCC 712
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI--F 80
D +LS S G + ++ V TG++E+ F LS A S+D +S + D I F
Sbjct: 1062 DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1121
Query: 81 DANT------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH----------T 124
D + GH+ V +AF+ DG + + +R+WN + + +H T
Sbjct: 1122 DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1181
Query: 125 FKHADQVWCVCVAPDGDKFVSVG 147
H V VC +PD VS G
Sbjct: 1182 ATHGGWVTDVCFSPDSKTLVSAG 1204
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 1 MKQISKINVGPVD--MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF--T 56
+K +S++ V P +++ FS D + + S + ++ ETG E++ D +
Sbjct: 610 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEV 667
Query: 57 LSIAYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISA--S 106
L A+S+D +IA+ + D + I+D+ TG HS V FT + A S
Sbjct: 668 LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 727
Query: 107 ADHTVRVWNFARRENMHT-FKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
D +++W+ ++E +T F H + V +PD + S D + ++ +
Sbjct: 728 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH--WIASGALDGI 76
FS DD Y+ + S K+ ++ TGKL +D + ++ + +A+G+ D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 77 INIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVW-----NFARRENMH 123
+ ++D N GH++ V F+ D + S SAD T+R+W N + N+
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Query: 124 TFKHADQ---------VWCVCVAPDGDKFVSVGEDKAV 152
F + + V C + DGDK + ++K +
Sbjct: 792 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 829
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
++ F+ D K ++S S+ I ++ +TG + +F + T+ + S + DG
Sbjct: 1015 HIQFTADGKTLISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDSRLLSWSFDG 1072
Query: 76 IINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
+ +++ TG H VLS A + D F S SAD T ++W+F +H K
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1132
Query: 127 HADQVWCVCVAPDGDKFVSVGED 149
H V C + DG ++ G+D
Sbjct: 1133 HNGCVRCSAFSLDG-ILLATGDD 1154
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+VVF ++ VL+ + L +TG+++ + + + S ++A G DG
Sbjct: 934 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDG 990
Query: 76 IINI--------FDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
I I F + GH V FT DGK IS+S D ++VWN
Sbjct: 991 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLS--------------IAYSTD 64
FSPDD+ + S S G + L+ V + + + + +F LS ++S D
Sbjct: 758 FSPDDELLASCSADGTLRLWDVRSANERKSINVK-RFFLSSEDPPEDVEVIVKCCSWSAD 816
Query: 65 GHWIASGALDGIINIFDANT---------GHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
G I A + ++ +FD +T GH S + F+ + A + + V +WN
Sbjct: 817 GDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 875
Query: 116 FARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
R + + H V V +PDG F++ +D+ + ++ K
Sbjct: 876 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 28/129 (21%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
FS D + +G +G+I ++ V +DG + S A I+
Sbjct: 1142 FSLDGILLATGDDNGEIRIWNV----------------------SDGQLLHSCA---PIS 1176
Query: 79 IFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVA 137
+ + H WV F+ D K +SA ++ WN A ++ TF + + + V+
Sbjct: 1177 VEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGDSSQTFYTNGTNLKKIHVS 1234
Query: 138 PDGDKFVSV 146
PD +V+V
Sbjct: 1235 PDFRTYVTV 1243
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI-- 79
D + ++S SQ GK+ ++ T E + ++ AY+ G IA G LD ++
Sbjct: 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134
Query: 80 --FDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
FD N H++++ + +FT ++AS D T +W+ + + +F
Sbjct: 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194
Query: 127 HADQVWCVCVAPD--GDKFVSVGEDKAVHMYSYK 158
H V C+ +AP G+ FVS G DK ++ +
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 11/141 (7%)
Query: 27 LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH 86
+SG K ++ + +G+ Q F+T S+ Y G ASG+ D ++D
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273
Query: 87 SSWVLSTA----------FTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQVWCVC 135
+ S F+ G+ + D+T+ VW+ + + F H ++V +
Sbjct: 274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR 333
Query: 136 VAPDGDKFVSVGEDKAVHMYS 156
V+PDG F S D + +++
Sbjct: 334 VSPDGTAFCSGSWDHTLRVWA 354
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF--TLSIAYSTDGHWIAS 70
D+ +V + P SGS LY + + I+ S+ +S G + +
Sbjct: 242 DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301
Query: 71 GALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVW 114
G D IN++D G H + V + + DG F S S DHT+RVW
Sbjct: 302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
D + +LS SQ GK+ ++ T R + ++ AY+ G+++A G LD I +I++
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 82 ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
T GH+ ++ F D + +++S D T +W+ ++ H
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
V + +APD FVS D + ++ +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
D+ ++ +PD + +SG+ L+ V G Q F +I + +G+ A+G+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 73 LDGIINIFDANTGHS----------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENM 122
D +FD + S +F++ G+ ++ D VW+ + +
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 123 HTFK-HADQVWCVCVAPDG 140
H ++V C+ V DG
Sbjct: 306 GVLAGHDNRVSCLGVTDDG 324
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
DD +++ S L+ +ETG+ F +S++ + D SGA D ++D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 82 AN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
TGH S + + F +G F + S D T R+++ + + T+ H D + C
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIIC 271
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIAS 70
D+ + F P+ +GS L+ + + + D S+++S G + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 71 GALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
G D N++DA GH + V T DG + S D +++WN
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKF 143
GH + + + + D + +SAS D + +W+ +H + V AP G+
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 144 VSVGEDKAVHMYSYK 158
G D +Y+ K
Sbjct: 113 ACGGLDNICSIYNLK 127
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
D + +LS SQ GK+ ++ T R + ++ AY+ G+++A G LD I +I++
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 82 ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
T GH+ ++ F D + +++S D T +W+ ++ H
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
V + +APD FVS D + ++ +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
D+ ++ +PD + +SG+ L+ V G Q F +I + +G+ A+G+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 73 LDGIINIFDANTGHS----------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENM 122
D +FD + S +F++ G+ ++ D VW+ + +
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 123 HTFK-HADQVWCVCVAPDG 140
H ++V C+ V DG
Sbjct: 306 GVLAGHDNRVSCLGVTDDG 324
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
DD +++ S L+ +ETG+ F +S++ + D SGA D ++D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 82 AN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
TGH S + + F +G F + S D T R+++ + + T+ H D + C
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIIC 271
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIAS 70
D+ + F P+ +GS L+ + + + D S+++S G + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 71 GALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
G D N++DA GH + V T DG + S D +++WN
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKF 143
GH + + + + D + +SAS D + +W+ +H + V AP G+
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 144 VSVGEDKAVHMYSYK 158
G D +Y+ K
Sbjct: 113 ACGGLDNICSIYNLK 127
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 68 IASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR 119
+ S + D I ++D TG H+ V +F GK S SAD T+++W+F
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 120 ENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
E + T H V V + P+GD VS DK + M+ +
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
V+F P ++S S+ I ++ ETG E+ I++ G +AS + D
Sbjct: 113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 172
Query: 76 IINIFD--------ANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH 127
I ++D GH V S + +G +SAS D T+++W + TF
Sbjct: 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT- 231
Query: 128 ADQVWCVCVAP--DGDKFVSVGEDKAVHMY 155
+ W V P DG S D+ V ++
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 65 GHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNF 116
G ++ SG+ D I ++D +TG H +WV F GKF +S + D T+RVW++
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 117 ARRENMHTF 125
+ M T
Sbjct: 368 KNKRCMKTL 376
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+V P+ +++S S+ I ++ V+TG + F ++ + + DG IAS + D
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 76 IINIFDANTGHS--------------SWVLSTAFT--------------RDGKFFISASA 107
+ ++ T SW ++++ + G F +S S
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 108 DHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
D T+++W+ + + T H + V V G +S +DK + ++ YK
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 25 YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN- 83
++LSGS+ I ++ V TG + + + + G +I S A D + ++D
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Query: 84 -------TGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
H +V S F + + ++ S D TV+VW
Sbjct: 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 82 ANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDG 140
A +GH S V F +SAS D T++VW++ + T K H D V + G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 141 DKFVSVGEDKAVHMYSYK 158
S D + ++ ++
Sbjct: 163 KLLASCSADMTIKLWDFQ 180
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
D + ++S SQ GK+ ++ T R + ++ AY+ G+++A G LD I +I++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 82 ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
T GH+ ++ F D + +++S D T +W+ ++ H
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
V + +APD FVS D + ++ +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
D+ ++ +PD + +SG+ L+ V G Q F +I + +G+ A+G+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 73 LDGIINIFDANTGHS----------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENM 122
D +FD + S +F++ G+ ++ D VW+ + +
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 123 HTFK-HADQVWCVCVAPDG 140
H ++V C+ V DG
Sbjct: 306 GVLAGHDNRVSCLGVTDDG 324
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
DD +++ S L+ +ETG+ F +S++ + D SGA D ++D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 82 AN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
TGH S + + F +G F + S D T R+++ + + T+ H D + C
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIIC 271
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIAS 70
D+ + F P+ +GS L+ + + + D S+++S G + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 71 GALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
G D N++DA GH + V T DG + S D +++WN
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKF 143
GH + + + + D + +SAS D + +W+ +H + V AP G+
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 144 VSVGEDKAVHMYSYK 158
G D +Y+ K
Sbjct: 113 ACGGLDNICSIYNLK 127
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
D + ++S SQ GK+ ++ T R + ++ AY+ G+++A G LD I +I++
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 82 ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
T GH+ ++ F D + +++S D T +W+ ++ H
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 195
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
V + +APD FVS D + ++ +
Sbjct: 196 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
D+ ++ +PD + +SG+ L+ V G Q F +I + +G+ A+G+
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 256
Query: 73 LDGIINIFDANTGHS----------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENM 122
D +FD + S +F++ G+ ++ D VW+ + +
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 316
Query: 123 HTFK-HADQVWCVCVAPDG 140
H ++V C+ V DG
Sbjct: 317 GVLAGHDNRVSCLGVTDDG 335
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
DD +++ S L+ +ETG+ F +S++ + D SGA D ++D
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 82 AN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
TGH S + + F +G F + S D T R+++ + + T+ H D + C
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIIC 282
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIAS 70
D+ + F P+ +GS L+ + + + D S+++S G + +
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 298
Query: 71 GALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
G D N++DA GH + V T DG + S D +++WN
Sbjct: 299 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKF 143
GH + + + + D + +SAS D + +W+ +H + V AP G+
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 123
Query: 144 VSVGEDKAVHMYSYK 158
G D +Y+ K
Sbjct: 124 ACGGLDNICSIYNLK 138
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
D + ++S SQ GK+ ++ T R + ++ AY+ G+++A G LD I +I++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 82 ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
T GH+ ++ F D + +++S D T +W+ ++ H
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
V + +APD FVS D + ++ +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
D+ ++ +PD + +SG+ L+ V G Q F +I + +G+ A+G+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 73 LDGIINIFDANTGHS----------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENM 122
D +FD + S +F++ G+ ++ D VW+ + +
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 123 HTFK-HADQVWCVCVAPDG 140
H ++V C+ V DG
Sbjct: 306 GVLAGHDNRVSCLGVTDDG 324
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
DD +++ S L+ +ETG+ F +S++ + D SGA D ++D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 82 AN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
TGH S + + F +G F + S D T R+++ + + T+ H D + C
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIIC 271
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIAS 70
D+ + F P+ +GS L+ + + + D S+++S G + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 71 GALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
G D N++DA GH + V T DG + S D +++WN
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKF 143
GH + + + + D + +SAS D + +W+ +H + V AP G+
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 144 VSVGEDKAVHMYSYK 158
G D +Y+ K
Sbjct: 113 ACGGLDNICSIYNLK 127
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYST-DGHWIASGAL 73
++ P YVLSGS + L+ E LEQ F+ F + +A++ D ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 74 DGIINIFDANTGHSSWVLSTAFTR-----------DGKFFISASADHTVRVWNFARRENM 122
D + ++ ++ L+T R D + I+AS D T+++W++ + +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
T + H V P +S ED + +++
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETG---KLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
F P + +VL+ SG++ L+ ET + Q+ +T + IA +WI G+ D
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDF 77
Query: 76 IINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM-HTFK 126
I +F+ NTG H ++ S A + +S S D TV++WN+ + TF+
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
Query: 127 -HADQVWCVCVAP-DGDKFVSVGEDKAVHMYS 156
H V CV P D F S D+ V ++S
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 25 YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT 84
+++ GS +I ++ TG+ F+ + SIA ++ SG+ D + +++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 85 ---------GHSSWVLSTAFT-RDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCV 134
GH +V+ AF +D F S D TV+VW+ + T +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 135 CV----APDGDKFVSVGEDKAVHMYSYK 158
V PD ++ +D + ++ Y+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 18 VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG--HWIASGALDG 75
VF P ++SGS+ G + ++ T K+E+ + + + IA G ++IASG +G
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYST-DGHWIASGAL 73
++ P YVLSGS + L+ E LEQ F+ F + +A++ D ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 74 DGIINIFDANTGHSSWVLSTAFTR-----------DGKFFISASADHTVRVWNFARRENM 122
D + ++ ++ L+T R D + I+AS D T+++W++ + +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
T + H V P +S ED + +++
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETG---KLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
F P + +VL+ SG++ L+ ET + Q+ +T + IA +WI G+ D
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDF 77
Query: 76 IINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM-HTFK 126
I +F+ NTG H ++ S A + +S S D TV++WN+ + TF+
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
Query: 127 -HADQVWCVCVAP-DGDKFVSVGEDKAVHMYS 156
H V CV P D F S D+ V ++S
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 25 YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT 84
+++ GS +I ++ TG+ F+ + SIA ++ SG+ D + +++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 85 ---------GHSSWVLSTAFT-RDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCV 134
GH +V+ AF +D F S D TV+VW+ + T +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 135 CV----APDGDKFVSVGEDKAVHMYSYK 158
V PD ++ +D + ++ Y+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 18 VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG--HWIASGALDG 75
VF P ++SGS+ G + ++ T K+E+ + + + IA G ++IASG +G
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 14 MWNVVFSPDDKY-VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
M +V F P + ++SGS + ++ K + F KF S+ Y+ DG AS
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 73 LDGIINIFDA---------------NTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFA 117
DG I +++ N HS V ++ DG SASAD T+++WN A
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 59 IAYSTDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFTRDGKFFISASADH 109
+A S D ++A G D ++++ + H + + S AF+ +G F ++
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513
Query: 110 TVRVWNFARR-ENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAV 152
V ++ A E HT H +V CV +PD + + D +V
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 24 KYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN 83
+ ++S S +G IN E G ++Q+ K +++ S DG + S +G IN +D +
Sbjct: 295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354
Query: 84 TG---------HSSWVLSTAFTRDGKFFISASADH 109
TG H++ + T G F + DH
Sbjct: 355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 389
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT---LSIAYSTDGHWIAS 70
++ + +SPD + S S I ++ V T K+E+ + L I ++ + S
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA--LVS 299
Query: 71 GALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM 122
+ +G IN + G H+ + + + + DGK SA A+ + W+ + +
Sbjct: 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359
Query: 123 HTFK--HADQVWCVCVAPDGDKF 143
F HA + + GD F
Sbjct: 360 RVFPDVHATMITGIKTTSKGDLF 382
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA 82
+K V+SGS+ + ++ +ETG+ + + Y DG + SGA D ++ ++D
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDP 266
Query: 83 NT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF 125
T GH++ V S F DG +S S D ++RVW+ +HT
Sbjct: 267 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA 82
D ++SGS + ++ ETG E I G + + SG+ D + ++D
Sbjct: 169 DNIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 226
Query: 83 NTGHSSWVL--STAFTR----DGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVC 135
TG VL A R DG+ +S + D V+VW+ +HT + H ++V+
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--S 284
Query: 136 VAPDGDKFVSVGEDKAVHMY 155
+ DG VS D ++ ++
Sbjct: 285 LQFDGIHVVSGSLDTSIRVW 304
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
D + V+SG+ + ++ ET S+ + DG + SG+LD I ++D
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305
Query: 82 AN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF----KHAD 129
TGH S L++ +S +AD TV++W+ + + T KH
Sbjct: 306 VETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 363
Query: 130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
V C+ + + ++ +D V ++ K
Sbjct: 364 AV--TCLQFNKNFVITSSDDGTVKLWDLK 390
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 16 NVVFSP--DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
N V+S D +V+SGS I ++ VETG I G +L+ + + SG
Sbjct: 280 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNILVSGNA 337
Query: 74 DGIINIFDANTG-----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE 120
D + I+D TG H S V F ++ F I++S D TV++W+ E
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGE 393
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 65 GHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNF 116
G+ I SG+ D + ++ A TG H+ V S+ RD IS S D T++VWN
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-RD-NIIISGSTDRTLKVWNA 186
Query: 117 ARRENMHT-FKHADQVWCV 134
E +HT + H V C+
Sbjct: 187 ETGECIHTLYGHTSTVRCM 205
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYS-TDGHWIASGAL 73
++ P YVLSGS + L+ E LEQ F+ F + +A++ D ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 74 DGIINIFDANTGHSSWVLSTAFTR-----------DGKFFISASADHTVRVWNFARRENM 122
D + ++ ++ L+T R D + I+AS D T+++W++ + +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
T + H V P +S ED + +++
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETG---KLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
F P + +VL+ SG++ L+ ET + Q+ +T + IA +WI G+ D
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDF 77
Query: 76 IINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM-HTFK 126
I +F+ NTG H ++ S A + +S S D TV++WN+ + TF+
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
Query: 127 -HADQVWCVCVAP-DGDKFVSVGEDKAVHMYS 156
H V CV P D F S D+ V ++S
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F +++ GS +I ++ TG+ F+ + SIA ++ SG+ D +
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 79 IFDANT---------GHSSWVLSTAFT-RDGKFFISASADHTVRVWNFARRENMHTFKHA 128
+++ GH +V+ AF +D F S D TV+VW+ + T
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 129 DQVWCVCV----APDGDKFVSVGEDKAVHMYSYK 158
+ V PD ++ +D + ++ Y+
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 18 VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG--HWIASGALDG 75
VF P ++SGS+ G + ++ T K+E+ + + + IA G ++IASG +G
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYS-TDGHWIASGAL 73
++ P YVLSGS + L+ E LEQ F+ F + +A++ D ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 74 DGIINIFDANTGHSSWVLSTAFTR-----------DGKFFISASADHTVRVWNFARRENM 122
D + ++ ++ L+T R D + I+AS D T+++W++ + +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
T + H V P +S ED + +++
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETG---KLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
F P + +VL+ SG++ ++ ET + Q+ +T + IA +WI G+ D
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDF 77
Query: 76 IINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM-HTFK 126
I +F+ NTG H ++ S A + +S S D TV++WN+ + TF+
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
Query: 127 -HADQVWCVCVAP-DGDKFVSVGEDKAVHMYS 156
H V CV P D F S D+ V ++S
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
F +++ GS +I ++ TG+ F+ + SIA ++ SG+ D +
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 79 IFDANT---------GHSSWVLSTAFT-RDGKFFISASADHTVRVWNFARRENMHTFKHA 128
+++ GH +V+ AF +D F S D TV+VW+ + T
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 129 DQVWCVCV----APDGDKFVSVGEDKAVHMYSYK 158
+ V PD ++ +D + ++ Y+
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 18 VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG--HWIASGALDG 75
VF P ++SGS+ G + ++ T K+E+ + + + IA G ++IASG +G
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+ + D Y LS S + L+ V TG+ Q F +S+ I SG+ D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 76 IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
I ++ GH+ WV + K ISA D V+ WN + +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
F H + + +PDG S G+D + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
GHS V T DG + +SAS D T+R+W+ A E F H V V +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 144 VSVGEDKAVHMYSYK 158
+S DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 19/156 (12%)
Query: 16 NVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
N++ S DK ++S +G +GV + F + DG + S + D
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPV----RSFKGHSHIVQDCTLTADGAYALSASWD 86
Query: 75 GIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
+ ++D TG H S V+S + IS S D T++VW +
Sbjct: 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG 146
Query: 127 HADQVWCVCVAP------DGDKFVSVGEDKAVHMYS 156
H D V V V P D +S G DK V ++
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
GH+S + + + DG SA D + +WN A ++ M+T D+V+ + +P+ ++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWL 252
Query: 145 SVGEDKAVHMYSYKP 159
+ + ++S P
Sbjct: 253 AAATATGIKVFSLDP 267
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 20 SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI 79
SPD + S + G+I L+ + K + + S+A+S + +W+A+ GI +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV-FSLAFSPNRYWLAAATATGI-KV 262
Query: 80 FDAN------------TGHSSWV----LSTAFTRDGKFFISASADHTVRVWN 115
F + G+S +S A++ DG+ + D+ +RVW
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+ + D Y LS S + L+ V TG+ Q F +S+ I SG+ D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 76 IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
I ++ GH+ WV + K ISA D V+ WN + +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
F H + + +PDG S G+D + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
GHS V T DG + +SAS D T+R+W+ A E F H V V +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 144 VSVGEDKAVHMYSYK 158
+S DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 19/156 (12%)
Query: 16 NVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
N++ S DK ++S +G +GV + F + DG + S + D
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPV----RSFKGHSHIVQDCTLTADGAYALSASWD 86
Query: 75 GIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
+ ++D TG H S V+S + IS S D T++VW +
Sbjct: 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG 146
Query: 127 HADQVWCVCVAP------DGDKFVSVGEDKAVHMYS 156
H D V V V P D +S G DK V ++
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
GH+S + + + DG SA D + +WN A ++ M+T D+V+ + +P+ ++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWL 252
Query: 145 SVGEDKAVHMYSYKP 159
+ + ++S P
Sbjct: 253 AAATATGIKVFSLDP 267
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 20 SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI 79
SPD + S + G+I L+ + K + + S+A+S + +W+A+ GI +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV-FSLAFSPNRYWLAAATATGI-KV 262
Query: 80 FDAN------------TGHSSWV----LSTAFTRDGKFFISASADHTVRVWN 115
F + G+S +S A++ DG+ + D+ +RVW
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+ + D Y LS S + L+ V TG+ Q F +S+ I SG+ D
Sbjct: 64 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 123
Query: 76 IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
I ++ GH+ WV + K ISA D V+ WN + +
Sbjct: 124 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 183
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
F H + + +PDG S G+D + +++
Sbjct: 184 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
GHS V T DG + +SAS D T+R+W+ A E F H V V +
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 116
Query: 144 VSVGEDKAVHMYSYK 158
+S DK + +++ K
Sbjct: 117 ISGSRDKTIKVWTIK 131
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 19/156 (12%)
Query: 16 NVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
N++ S DK ++S +G +GV + F + DG + S + D
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPV----RSFKGHSHIVQDCTLTADGAYALSASWD 80
Query: 75 GIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
+ ++D TG H S V+S + IS S D T++VW +
Sbjct: 81 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG 140
Query: 127 HADQVWCVCVAP------DGDKFVSVGEDKAVHMYS 156
H D V V V P D +S G DK V ++
Sbjct: 141 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
GH+S + + + DG SA D + +WN A ++ M+T D+V+ + +P+ ++
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWL 246
Query: 145 SVGEDKAVHMYSYKP 159
+ + ++S P
Sbjct: 247 AAATATGIKVFSLDP 261
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 20 SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI 79
SPD + S + G+I L+ + K + + S+A+S + +W+A+ GI +
Sbjct: 199 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV-FSLAFSPNRYWLAAATATGI-KV 256
Query: 80 FDAN------------TGHSSWV----LSTAFTRDGKFFISASADHTVRVWN 115
F + G+S +S A++ DG+ + D+ +RVW
Sbjct: 257 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+ + D Y LS S + L+ V TG+ Q F +S+ I SG+ D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 76 IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
I ++ GH+ WV + K ISA D V+ WN + +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
F H + + +PDG S G+D + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
GHS V T DG + +SAS D T+R+W+ A E F H V V +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 144 VSVGEDKAVHMYSYK 158
+S DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 19/156 (12%)
Query: 16 NVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
N++ S DK ++S +G +GV + F + DG + S + D
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPV----RSFKGHSHIVQDCTLTADGAYALSASWD 86
Query: 75 GIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
+ ++D TG H S V+S + IS S D T++VW +
Sbjct: 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG 146
Query: 127 HADQVWCVCVAP------DGDKFVSVGEDKAVHMYS 156
H D V V V P D +S G DK V ++
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
GH+S + + + DG SA D + +WN A ++ M+T D+V+ + +P+ ++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWL 252
Query: 145 SVGEDKAVHMYSYKP 159
+ + ++S P
Sbjct: 253 AAATATGIKVFSLDP 267
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 20 SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI 79
SPD + S + G+I L+ + K + + S+A+S + +W+A+ GI +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV-FSLAFSPNRYWLAAATATGI-KV 262
Query: 80 FDAN------------TGHSSWV----LSTAFTRDGKFFISASADHTVRVWN 115
F + G+S +S A++ DG+ + D+ +RVW
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+ + D Y LS S + L+ V TG+ Q F +S+ I SG+ D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 76 IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
I ++ GH+ WV + K ISA D V+ WN + +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
F H + + +PDG S G+D + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
GHS V T DG + +SAS D T+R+W+ A E F H V V +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 144 VSVGEDKAVHMYSYK 158
+S DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 19/156 (12%)
Query: 16 NVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
N++ S DK ++S +G +GV + F + DG + S + D
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPV----RSFKGHSHIVQDCTLTADGAYALSASWD 86
Query: 75 GIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
+ ++D TG H S V+S + IS S D T++VW +
Sbjct: 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG 146
Query: 127 HADQVWCVCVAP------DGDKFVSVGEDKAVHMYS 156
H D V V V P D +S G DK V ++
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
GH+S + + + DG SA D + +WN A ++ M+T D+V+ + +P+ ++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWL 252
Query: 145 SVGEDKAVHMYSYKP 159
+ + ++S P
Sbjct: 253 AAATATGIKVFSLDP 267
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 20 SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI 79
SPD + S + G+I L+ + K + + S+A+S + +W+A+ GI +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV-FSLAFSPNRYWLAAATATGI-KV 262
Query: 80 FDAN------------TGHSSWV----LSTAFTRDGKFFISASADHTVRVWN 115
F + G+S+ +S A++ DG+ + D+ +RVW
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 17/109 (15%)
Query: 23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI--- 79
D+ V+SGS I L+ +E G ++ + + I + D I SGA DG I +
Sbjct: 306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363
Query: 80 ---FDANTGHSSWVLSTAFTRDGKFF---------ISASADHTVRVWNF 116
D + L T G+ F +S+S D T+ +W+F
Sbjct: 364 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDF 412
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKL--------EQIFDTRGKFTLSIAYSTDGH---WIAS 70
D++ +++GS + ++ V TG++ E + R + + S D W +
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 241
Query: 71 GALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HAD 129
D I + GH + V F D K+ +SAS D T++VWN + E + T H
Sbjct: 242 SPTD--ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297
Query: 130 QVWCV 134
+ C+
Sbjct: 298 GIACL 302
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 64 DGHWIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
D +I S + D I +++ +T GH + + RD + +S S+D+T+R+W+
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RD-RLVVSGSSDNTIRLWD 322
Query: 116 FARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
+ + +++ C+ D + VS D + ++
Sbjct: 323 IECGACLRVLEGHEEL-VRCIRFDNKRIVSGAYDGKIKVW 361
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 14/155 (9%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+ + D Y LS S + L+ V TG+ Q F S+ I SG+ D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDK 129
Query: 76 IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
I ++ GH+ WV + K ISA D V+ WN + +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
F H + + +PDG S G+D + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
GHS V T DG + +SAS D T+R+W+ A E F H V V +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI 122
Query: 144 VSVGEDKAVHMYSYK 158
+S DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 19/156 (12%)
Query: 16 NVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
N++ S DK ++S +G +GV + F + DG + S + D
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPV----RSFKGHSHIVQDCTLTADGAYALSASWD 86
Query: 75 GIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
+ ++D TG H S V S + IS S D T++VW +
Sbjct: 87 KTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLG 146
Query: 127 HADQVWCVCVAP------DGDKFVSVGEDKAVHMYS 156
H D V V V P D +S G DK V ++
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
GH+S + + + DG SA D + +WN A ++ +T D+V+ + +P+ ++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPN-RYWL 252
Query: 145 SVGEDKAVHMYSYKP 159
+ + ++S P
Sbjct: 253 AAATATGIKVFSLDP 267
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 20 SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI 79
SPD + S + G+I L+ + K + + S+A+S + +W+A+ GI +
Sbjct: 205 SPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV-FSLAFSPNRYWLAAATATGI-KV 262
Query: 80 FDAN------------TGHSSWV----LSTAFTRDGKFFISASADHTVRVW 114
F + G+S +S A++ DG+ + D+ +RVW
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 55 FTLSIAYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISAS 106
F +A S + + S + D + ++D TG H S V S AF+ D + +SA
Sbjct: 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG 137
Query: 107 ADHTVRVWNF--------ARRENMHTFKHADQVWCVCVAP 138
A+ +++WN A +EN H+D V CV +P
Sbjct: 138 AEREIKLWNILGECKFSSAEKEN-----HSDWVSCVRYSP 172
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 22/161 (13%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
++ S ++ + +S S + L+ + TG + F S+A+S D I S +
Sbjct: 81 DLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER 140
Query: 76 IINIFD----------ANTGHSSWVLSTAFTRDGK----------FFISASADHTVRVWN 115
I +++ HS WV ++ K +F S D ++VWN
Sbjct: 141 EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Query: 116 FARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
+ +TFK H V + ++P+G + G+DK + ++
Sbjct: 201 -TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 52 RGKFTLSIAYSTDGHWIASGALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFFI 103
RG S G+ + SG+ D + ++D +GH+ + ST + + K I
Sbjct: 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 104 SASADHTVRVWNFARRENMHTFK 126
SAS D T+R+W+ E M+T +
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQ 349
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 52 RGKFTLSI-AYSTDGHWIASGALDGIINIFDA--------NTGHSSWVLSTAFTRDGKFF 102
RG T I + +++ +GA D +I ++D+ +GH V + + G
Sbjct: 118 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-IL 176
Query: 103 ISASADHTVRVWNFARRENMHTFK-HADQVWCV-CVAPDGDKFVSVG-EDKAVHMY 155
+S S D TVRVW+ + H F+ H V C+ V K++ G D +H++
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 26 VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG 85
V+SGS + ++ V K I S Y + S ++D I I+D G
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342
Query: 86 HSSWVLS--TAFT----RDGKFFISASADHTVRVW---NFARRENMH 123
+ L TA KF +SA+AD ++R W +++R+ + H
Sbjct: 343 ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH 389
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 29/120 (24%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHW---------IASGA 72
+D YV++G+ I +Y KF L ++ G W + SG+
Sbjct: 131 EDNYVITGADDKMIRVYD----------SINKKFLLQLSGHDGGVWALKYAHGGILVSGS 180
Query: 73 LDGIINIFDAN--------TGHSSWV--LSTAFTRDGKFFISASADHTVRVWNFARRENM 122
D + ++D GH+S V L ++ K+ ++ S D+T+ VW + ++
Sbjct: 181 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
S D + +G + + + G+ Q D + S+ Y G W+A G +
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI-FSLGYCPTGEWLAVGMESSNVE 249
Query: 79 IFDANTG-------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQV 131
+ N H S VLS F GK+F+S D+ + W ++ K + V
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV 309
Query: 132 WCVCVAPDGDKFVSVGE-DKAVHMY 155
++ D DK++ G DK +Y
Sbjct: 310 LSCDISVD-DKYIVTGSGDKKATVY 333
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 7/148 (4%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
+ + SPD K S G I ++ + L + F I S DG + +G LD
Sbjct: 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204
Query: 75 GIINIFDANTGH-------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH 127
+ +D G +S + S + G++ V V + + + H
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH 264
Query: 128 ADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
V + A G FVS G+D ++ +
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 22/175 (12%)
Query: 2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE-------TGKLEQIFDTRGK 54
+QI+ +N G V + V S ++V +G + G + ++ + +L+ + R
Sbjct: 43 RQINTLNHGEV-VCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCL--NRDN 98
Query: 55 FTLSIAYSTDGHWIASGALDGIINIFDAN----------TGHSSWVLSTAFTRDGKFFIS 104
+ S DG + G ++I+D T + + A + D K S
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 105 ASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
+D + VW+ + + F+ H D C+ ++ DG K + G D V + +
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 19/124 (15%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF-------DTRGKFTLSIAYSTDG 65
D+ +V F PD + +GS G L+ + TG Q++ D S+A+S G
Sbjct: 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310
Query: 66 HWIASGALDG------------IINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRV 113
+ +G +G ++N+ H + + DG + S D +++
Sbjct: 311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370
Query: 114 WNFA 117
W F+
Sbjct: 371 WAFS 374
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 58 SIAYSTDGHWIASGALDGIINIFDANTGHS---------------SWVLSTAFTRDGKFF 102
S+ + DG +G+ DG +FD TGH V S AF+ G+
Sbjct: 254 SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313
Query: 103 ISASADHTVRVWNFARRE---NMHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
+ ++ VW+ E N+ T + H ++ C+ ++ DG + DK + ++++
Sbjct: 314 FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKF 143
GHS V S +T + + +SAS D + VWN + H K H V AP+G
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123
Query: 144 VSVGEDKAVHMYS 156
G D A +++
Sbjct: 124 ACGGLDSACSIFN 136
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 77 INIFDAN--TGHSSWVLSTAF-TRDGKFFISASADHTVRVWNF--ARRENMHTFKHADQV 131
I+IF + +GH++ VLS + + + FIS S D TVR+W+ R H +
Sbjct: 193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI 252
Query: 132 WCVCVAPDGDKFVSVGEDKAVHMYSYK 158
V PDG +F + +D ++ +
Sbjct: 253 NSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 19 FSPD-DKYVLSGSQSGKINLYGVETGKLEQIFD-------TRGKFTLSIAYSTDGHWIAS 70
+ PD + +++GS L+ V TG+ IF T +LSI S + + S
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI-NSLNANMFIS 223
Query: 71 GALDGIINIFDANT---------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN 121
G+ D + ++D GH + S F DG+ F + S D T R+++
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 122 MHTFKH 127
+ +
Sbjct: 284 LQVYNR 289
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 76 IINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCV 134
++N F A H V + + DG +S D +V+VW+ +++ + ++ H+ +V CV
Sbjct: 129 LVNKF-AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV 187
Query: 135 CVAPDGDK-FVSVGEDKAVHMY-SYKP 159
P D F+S GED + ++ + KP
Sbjct: 188 AACPGKDTIFLSCGEDGRILLWDTRKP 214
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK-F 143
H V + + G +S S D ++VW+ A++ + +++ HA QV CV +P D F
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 144 VSVGEDKAVHMYSYK 158
+S ED + ++ +
Sbjct: 186 LSCSEDNRILLWDTR 200
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 101 FFISASADHTVRVWNFARREN----MHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
F +AS D TV++W+ + +++ H V C +PDG + ++ + + +YS
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 325
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 101 FFISASADHTVRVWNFARREN----MHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
F +AS D TV++W+ + +++ H V C +PDG + ++ + + +YS
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 101 FFISASADHTVRVWNFARREN----MHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
F +AS D TV++W+ + +++ H V C +PDG + ++ + + +YS
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 17/140 (12%)
Query: 23 DKYVLS-GSQSGKINLYGVETGKLE-QIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF 80
+ Y+LS GS+SG I+ + V + + + ++ DG +ASG D ++N++
Sbjct: 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Query: 81 DANTGHSSWVLSTAFTRDGKFFIS---------------ASADHTVRVWNFARRENMHTF 125
+ G WV FT+ + ++D +R+WN +
Sbjct: 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237
Query: 126 KHADQVWCVCVAPDGDKFVS 145
QV + +P + +S
Sbjct: 238 DAHSQVCSILWSPHYKELIS 257
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 22/150 (14%)
Query: 26 VLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN 83
VL+ + + L+ +G + Q+ + G++ S+A+ +G+++A G + ++D
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 84 --------TGHSSWVLSTAFTRDGKFFISASA------DHTVRVWNFARRENMHTFKHAD 129
T HS+ V S ++ + +S+ + H VRV A H+
Sbjct: 98 QQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV---AEHHVATLSGHSQ 151
Query: 130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
+V + APDG S G D V+++ P
Sbjct: 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW 114
GH+S VLS + DG SA+AD T+R+W
Sbjct: 282 GHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 23 DKYVLS-GSQSGKINLYGVETGKLE-QIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF 80
+ Y+LS GS+SG I+ + V + + + ++ DG +ASG D ++N++
Sbjct: 209 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Query: 81 DANTGHSSWVLSTAFTR-DGKFFISA--------------SADHTVRVWNFARRENMHTF 125
+ G WV FT+ G A ++D +R+WN +
Sbjct: 269 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 328
Query: 126 KHADQVWCVCVAPDGDKFVS 145
QV + +P + +S
Sbjct: 329 DAHSQVCSILWSPHYKELIS 348
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 22/150 (14%)
Query: 26 VLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN 83
VL+ + + L+ +G + Q+ + G++ S+A+ +G+++A G + ++D
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 84 --------TGHSSWVLSTAFTRDGKFFISASAD------HTVRVWNFARRENMHTFKHAD 129
T HS+ V S ++ + +S+ + H VRV A H+
Sbjct: 189 QQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV---AEHHVATLSGHSQ 242
Query: 130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
+V + APDG S G D V+++ P
Sbjct: 243 EVCGLRWAPDGRHLASGGNDNLVNVWPSAP 272
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW 114
GH+S VLS + DG SA+AD T+R+W
Sbjct: 373 GHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 26 VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWI-ASGALDGIINIFD--- 81
V G++ K+ L +++G I + L++++S +I A+ + D + ++D
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 82 ---------------------ANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE 120
ANT H+ V FT DG ++ D+ +R+WN + E
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Query: 121 N 121
N
Sbjct: 279 N 279
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 24/108 (22%)
Query: 64 DGHWIASGALDGIINIFD-ANTGHSSWVLSTA---------------------FTRDGKF 101
+G ++ SG DG+I ++D N+ S+ A + D
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 102 FISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDK--FVSVG 147
F S+S D T++VW+ + F + V+ ++P K V+VG
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVG 162
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 23 DKYVLS-GSQSGKINLYGVETGKLE-QIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF 80
+ Y+LS GS+SG I+ + V + + + ++ DG +ASG D ++N++
Sbjct: 198 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Query: 81 DANTGHSSWVLSTAFTR-DGKFFISA--------------SADHTVRVWNFARRENMHTF 125
+ G WV FT+ G A ++D +R+WN +
Sbjct: 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317
Query: 126 KHADQVWCVCVAPDGDKFVS 145
QV + +P + +S
Sbjct: 318 DAHSQVCSILWSPHYKELIS 337
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 22/150 (14%)
Query: 26 VLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN 83
VL+ + + L+ +G + Q+ + G++ S+A+ +G+++A G + ++D
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 84 --------TGHSSWVLSTAFTRDGKFFISASAD------HTVRVWNFARRENMHTFKHAD 129
T HS+ V S ++ + +S+ + H VRV A H+
Sbjct: 178 QQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV---AEHHVATLSGHSQ 231
Query: 130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
+V + APDG S G D V+++ P
Sbjct: 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVW 114
GH+S VLS + DG SA+AD T+R+W
Sbjct: 362 GHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 52 RGKFTLSIAYSTDGHWIASGALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFFI 103
RG S G+ + SG+ D + ++D +GH+ + ST + + K I
Sbjct: 267 RGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 104 SASADHTVRVWNFARRENMHTFK 126
SAS D T+R+W+ E +T +
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQ 349
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 64 DGHWIASGALDGIINIFDA--------NTGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
+ +++ +GA D I ++D+ +GH V + + G +S S D TVRVW+
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189
Query: 116 FARRENMHTFK-HADQVWCV-CVAPDGDKFVSVG-EDKAVHMY 155
+ H F+ H V C+ V K++ G D +H++
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 26 VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG 85
V+SGS + ++ V K I S Y + S + D I I+D G
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG 342
Query: 86 HSSWVLS--TAFT----RDGKFFISASADHTVRVW---NFARRENMH 123
+ L TA KF +SA+AD ++R W +++R+ + H
Sbjct: 343 ELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH 389
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 29/120 (24%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHW---------IASGA 72
+D YV++G+ I +Y KF L ++ G W + SG+
Sbjct: 131 EDNYVITGADDKXIRVYD----------SINKKFLLQLSGHDGGVWALKYAHGGILVSGS 180
Query: 73 LDGIINIFDAN--------TGHSSWV--LSTAFTRDGKFFISASADHTVRVWNFARRENM 122
D + ++D GH+S V L ++ K+ ++ S D+T+ VW + ++
Sbjct: 181 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQV 131
HSSWV+S +F G+ SA D +R W+ +E + T H D +
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQV 131
HSSWV+S +F G+ SA D +R W+ +E + T H D +
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 20/113 (17%)
Query: 59 IAYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHT 110
+A DGH+I S + DG+I + D +TG H S+V +G +S D T
Sbjct: 190 LAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDI-VSCGEDRT 247
Query: 111 VRVWNFARRENMHTFKH-----ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
VR+W+ +EN + K A +W V +GD V D V ++S +
Sbjct: 248 VRIWS---KEN-GSLKQVITLPAISIWSVDCXSNGDIIVG-SSDNLVRIFSQE 295
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 102 FISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHM 154
F++ASAD T+++W + + H D V + V DG F+S D + +
Sbjct: 158 FLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDG-HFISCSNDGLIKL 209
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 22/155 (14%)
Query: 23 DKYVLSGSQSGKINLYGV----ETGKLEQIFDTRGK---FTLSIAY--STDGHWIASGAL 73
D V + S ++ LY E L+ D +T + Y +T +A
Sbjct: 70 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 129
Query: 74 DGIINIFDANT--------GHSSWVLSTAF-TRDGKFFISASADHTVRVWNFARRENMHT 124
GII I + T GH + + F RD +S S DH +R+WN +
Sbjct: 130 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 189
Query: 125 F----KHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
F H D+V G+K +S G D ++ ++
Sbjct: 190 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 74 DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA 128
D ++ IF GH VLS + G+ +S DH++++W + M+ K +
Sbjct: 184 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 238
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
GH + V A G+ +SAS D T+R+W +HTF + DG +
Sbjct: 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN------PHDGVNSI 232
Query: 145 S--VGEDKAVHMYS 156
+ VG D+ +H S
Sbjct: 233 ALFVGTDRQLHEIS 246
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
++ + F P + ++S SQ ++ ++ V+ G + IA G + S +
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 200
Query: 73 LDGIINIFDANTG 85
LDG I +++ TG
Sbjct: 201 LDGTIRLWECGTG 213
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
GH + V A G+ +SAS D T+R+W +HTF + DG +
Sbjct: 176 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN------PHDGVNSI 229
Query: 145 S--VGEDKAVHMYS 156
+ VG D+ +H S
Sbjct: 230 ALFVGTDRQLHEIS 243
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
++ + F P + ++S SQ ++ ++ V+ G + IA G + S +
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 197
Query: 73 LDGIINIFDANTG 85
LDG I +++ TG
Sbjct: 198 LDGTIRLWECGTG 210
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 48/136 (35%), Gaps = 35/136 (25%)
Query: 4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST 63
+S +N D+ +VV+ P + + S S + LY E
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE---------------------- 180
Query: 64 DGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWN--FARREN 121
+ W+ L+G H S V S AF G+ S S D TVR+W E
Sbjct: 181 EDDWVCCATLEG----------HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230
Query: 122 MHTFKHADQVW-CVCV 136
+D W C+C
Sbjct: 231 GVACSGSDPSWKCICT 246
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 43 GKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA-----------NTGHSSWVL 91
G++ D+R F +A++ G +AS D I I+ + GH V
Sbjct: 9 GRVPAHPDSRCWF---LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR 65
Query: 92 STAFTRDGKFFISASADHTVRVW--NFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGE 148
A++ G + SAS D T +W N E + T + H ++V V AP G+ +
Sbjct: 66 KVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR 125
Query: 149 DKAVHMY 155
DK+V ++
Sbjct: 126 DKSVWVW 132
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 62/208 (29%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTL-SIAYSTDGHWIAS 70
W + ++P + S +I ++G E + + + T+ +A+S G+++AS
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 71 GALDGIINIFDAN----------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE 120
+ D I+ N GH + V S A+ G + S D +V VW +
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 121 --------NMHTFK----------------------------------------HADQVW 132
N HT H VW
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 133 CVCVAPDGDKFVSVGEDKAVHMY-SYKP 159
+ P G + S +D+ V ++ Y P
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIWRQYLP 226
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 22/155 (14%)
Query: 23 DKYVLSGSQSGKINLYGV----ETGKLEQIFDTRGK---FTLSIAY--STDGHWIASGAL 73
D V + S ++ LY E L+ D +T + Y +T +A
Sbjct: 29 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 88
Query: 74 DGIINIFDANT--------GHSSWVLSTAF-TRDGKFFISASADHTVRVWNFARRENMHT 124
GII I + T GH + + F RD +S S DH +R+WN +
Sbjct: 89 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 148
Query: 125 F----KHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
F H D+V G+K +S G D ++ ++
Sbjct: 149 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 74 DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA 128
D ++ IF GH VLS + G+ +S DH++++W + M+ K +
Sbjct: 143 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 197
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 74 DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA 128
D ++ IF GH VLS + G+ +S DH++++W + M+ K +
Sbjct: 147 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 22/155 (14%)
Query: 23 DKYVLSGSQSGKINLYGV----ETGKLEQIFDTRGK---FTLSIAY--STDGHWIASGAL 73
D V + S ++ LY E L+ D +T + Y +T +A
Sbjct: 33 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 92
Query: 74 DGIINIFDANT--------GHSSWVLSTAF-TRDGKFFISASADHTVRVWNFARRENMHT 124
GII I + T GH + + F RD +S S DH +R+WN +
Sbjct: 93 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 152
Query: 125 F----KHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
F H D+V G+K +S G D ++ ++
Sbjct: 153 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 74 DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA 128
D ++ IF GH VLS + G+ +S DH++++W + M+ K +
Sbjct: 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 202
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 22/155 (14%)
Query: 23 DKYVLSGSQSGKINLYGV----ETGKLEQIFDTRGK---FTLSIAY--STDGHWIASGAL 73
D V + S ++ LY E L+ D +T + Y +T +A
Sbjct: 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93
Query: 74 DGIINIFDANT--------GHSSWVLSTAF-TRDGKFFISASADHTVRVWNFARRENMHT 124
GII I + T GH + + F RD +S S DH +R+WN +
Sbjct: 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 153
Query: 125 F----KHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
F H D+V G+K +S G D ++ ++
Sbjct: 154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 74 DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA 128
D ++ IF GH VLS + G+ +S DH++++W + M+ K +
Sbjct: 147 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 22/155 (14%)
Query: 23 DKYVLSGSQSGKINLYGV----ETGKLEQIFDTRGK---FTLSIAY--STDGHWIASGAL 73
D V + S ++ LY E L+ D +T + Y +T +A
Sbjct: 33 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 92
Query: 74 DGIINIFDANT--------GHSSWVLSTAF-TRDGKFFISASADHTVRVWNFARRENMHT 124
GII I + T GH + + F RD +S S DH +R+WN +
Sbjct: 93 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 152
Query: 125 F----KHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
F H D+V G+K +S G D ++ ++
Sbjct: 153 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
GH + F K +SAS D T+R+W+ + + F Q DK +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVI 304
Query: 145 SVGEDKAVHMYSYK 158
S D +V ++S K
Sbjct: 305 SCSMDGSVRLWSLK 318
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
DDK V+S S G + L+ ++ L + G + S DG A +DG +N++D
Sbjct: 300 DDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 21/157 (13%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
+V +S D ++ G +G +++Y VE+ KL + + + S + H ++SG+
Sbjct: 139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG---CLSWNRHVLSSGSRS 195
Query: 75 GIINIFDAN---------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF 125
G I+ D GHSS V A+ DG S D+ V++W+ R ++ F
Sbjct: 196 GAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA--RSSIPKF 253
Query: 126 ---KHADQVWCVCVAPDGDKFVSVG---EDKAVHMYS 156
H V V P ++ G DK +H ++
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 37 LYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDANT--------GHS 87
++ ++G + + +T + S+ +S DG +++ G +G+++I+D + GH
Sbjct: 117 VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ 176
Query: 88 SWVLSTAFTRDGKFFISASA---DHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKF 143
+ V ++ R S S H VR+ N + T + H+ +V + DG +
Sbjct: 177 ARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN----HQIGTLQGHSSEVCGLAWRSDGLQL 232
Query: 144 VSVGEDKAVHMYSYK 158
S G D V ++ +
Sbjct: 233 ASGGNDNVVQIWDAR 247
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 27 LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA--------YSTDGHWIASGALDGIIN 78
GS I L G E + ++ G S + YS +G + G LDG
Sbjct: 18 FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--GTLDG--- 72
Query: 79 IFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAP 138
H+ + S K+ ++ SAD+++++W+ + + + T+K V V +P
Sbjct: 73 -------HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP 125
Query: 139 DGDKFVSV 146
G+ F+++
Sbjct: 126 CGNYFLAI 133
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 91 LSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKF 143
L A + DGK +++ + D TV V N + ++T + V PDG K
Sbjct: 119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV 172
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKL-----EQIFDTRG---KFTLSIAYSTDGHWIASGAL 73
+D + SGS+ + ++ + G L E + G + + + T + + S
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152
Query: 74 DGIINIFDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRV 113
D +I ++D TG H + S ++RDG ++ D VRV
Sbjct: 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 83 NTGHSSWVLSTAFT-RDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC--VCVAPD 139
N GH +LS + +D +S+ D+TV +WN E + F A WC AP+
Sbjct: 258 NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPE 316
Query: 140 G-DKFVSVGEDKAVHMYSYK 158
D F D + + + +
Sbjct: 317 APDLFACASFDNKIEVQTLQ 336
>pdb|1PW5|A Chain A, Putative Nagd Protein
Length = 253
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 21 PDDKYVLSGS--------QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
PDD V SG + G+ ++ + T +L+++F+ AY GH I
Sbjct: 66 PDDAVVTSGEITAEHXLKRFGRCRIFLLGTPQLKKVFE---------AY---GHVIDEEN 113
Query: 73 LDGIINIFDANTGHSSWVLSTAFTRDGKFFISASAD 108
D ++ FD + + R GKF+I+ D
Sbjct: 114 PDFVVLGFDKTLTYERLKKACILLRKGKFYIATHPD 149
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 77 INIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ-----V 131
+N+ D N + V S F+ KF +A +D + WN R+ + F ++ +
Sbjct: 243 LNLKDTNLAYP--VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300
Query: 132 WC----VCVAPDGDKF 143
C +C+A D F
Sbjct: 301 ACSDNILCLATSDDTF 316
>pdb|1VJR|A Chain A, Crystal Structure Of 4-nitrophenylphosphatase (tm1742)
From Thermotoga Maritima At 2.40 A Resolution
Length = 271
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 21 PDDKYVLSGS--------QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
PDD V SG + G+ ++ + T +L+++F+ AY GH I
Sbjct: 78 PDDAVVTSGEITAEHXLKRFGRCRIFLLGTPQLKKVFE---------AY---GHVIDEEN 125
Query: 73 LDGIINIFDANTGHSSWVLSTAFTRDGKFFISASAD 108
D ++ FD + + R GKF+I+ D
Sbjct: 126 PDFVVLGFDKTLTYERLKKACILLRKGKFYIATHPD 161
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 77 INIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ-----V 131
+N+ D N + V S F+ KF +A +D + WN R+ + F ++ +
Sbjct: 243 LNLKDTNLAYP--VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300
Query: 132 WC----VCVAPDGDKF 143
C +C+A D F
Sbjct: 301 ACSDNILCLATSDDTF 316
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 77 INIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ-----V 131
+N+ D N + V S F+ KF +A +D + WN R+ + F ++ +
Sbjct: 243 LNLKDTNLAYP--VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300
Query: 132 WC----VCVAPDGDKF 143
C +C+A D F
Sbjct: 301 ACSDNILCLATSDDTF 316
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 77 INIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ-----V 131
+N+ D N + V S F+ KF +A +D + WN R+ + F ++ +
Sbjct: 243 LNLKDTNLAYP--VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300
Query: 132 WC----VCVAPDGDKF 143
C +C+A D F
Sbjct: 301 ACSDNILCLATSDDTF 316
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 22 DDKYVLSGSQSGKINLYGVETGKL-----EQIFDTRG---KFTLSIAYSTDGHWIASGAL 73
+D + SGS+ + ++ + G L E + G + + + T + + S
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGX 152
Query: 74 DGIINIFDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRV 113
D +I ++D TG H + S ++RDG ++ D VRV
Sbjct: 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 79 IFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH 127
I A H+ VL ++ DG +AS D T ++W+ + + + +H
Sbjct: 78 IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQH 126
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 96 TRDGKFFISASADHTVRVWN-------FARRENMHTFKHADQVWCVCVAPDGDKFVSVGE 148
T G F I+ S + VR W + + MHT D VC + DG K +
Sbjct: 51 TLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLD----VCWSDDGSKVFTASC 106
Query: 149 DKAVHMY 155
DK M+
Sbjct: 107 DKTAKMW 113
>pdb|1MIO|B Chain B, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|D Chain D, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 458
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 9 VGPVDMWNV-----------VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFT 56
VGP DM + + PD VL G +G+ +Y K+E + DT T
Sbjct: 179 VGPADMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLT 238
Query: 57 LSI-AYSTD 64
LS+ +Y++D
Sbjct: 239 LSLGSYASD 247
>pdb|2LTL|A Chain A, Solution Nmr Structure Of Nifu-Like Protein From
Saccharomyces Cerevisiae, Northeast Structural Genomics
Consortium (Nesg) Target Yr313a
Length = 119
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 126 KHADQVWCVCVAPD----GDKFVSVGEDKAVHMYSYKP 159
K A Q++ C + GD F+++ +D+ VH S KP
Sbjct: 62 KLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNSIKP 99
>pdb|4AFK|A Chain A, In Meso Structure Of Alginate Transporter, Alge, From
Pseudomonas Aeruginosa, Pao1
Length = 458
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 22 DDKYVLSGSQSGKINLYGVETG 43
DD+ + +G QSG +N +GV+ G
Sbjct: 262 DDRRIATGKQSGDVNAFGVDLG 283
>pdb|3RBH|A Chain A, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
pdb|3RBH|B Chain B, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
pdb|3RBH|C Chain C, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
pdb|3RBH|D Chain D, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
Length = 479
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 22 DDKYVLSGSQSGKINLYGVETG 43
DD+ + +G QSG +N +GV+ G
Sbjct: 283 DDRRIATGKQSGDVNAFGVDLG 304
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 21/131 (16%)
Query: 4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIFDTRG--KFTLSI 59
I + + +W+ FS + +GS KI L V+ L + D K S+
Sbjct: 7 IKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV 64
Query: 60 AYSTDGHWIASGALDGIINIFDANT---------------GHSSWVLSTAFTRDGKFFIS 104
A+ +A+G+ D ++I+ GH + V A++ DG + +
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 105 ASADHTVRVWN 115
S D +V +W
Sbjct: 125 CSRDKSVWIWE 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,349,369
Number of Sequences: 62578
Number of extensions: 219424
Number of successful extensions: 1045
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 356
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)