RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10953
(181 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 89.4 bits (220), Expect = 3e-22
Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 11/155 (7%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
D+ ++ +PD + +SG+ L+ V G Q F +I + +G+ A+G+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 73 LDGIINIFDANTGHSSW----------VLSTAFTRDGKFFISASADHTVRVWNFARRENM 122
D +FD + S +F++ G+ ++ D VW+ + +
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
H ++V C+ V DG + D + +++
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 61.3 bits (147), Expect = 4e-12
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 65 GHWIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRV--- 113
SGA D ++D GH S + + F +G F + S D T R+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 114 WNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG 168
+ V + G ++ +D +++ + V G
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Score = 49.3 bits (116), Expect = 4e-08
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFV 144
H+ V+S + D + F+S + D + ++W+ TF H + +C P+G+ F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 145 SVGEDKAVHMYSY 157
+ +D ++
Sbjct: 243 TGSDDATCRLFDL 255
Score = 45.5 bits (106), Expect = 8e-07
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 84 TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ-VWCVCVAPDGDK 142
GH + + + + D + +SAS D + +W+ +H V AP G+
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 143 F 143
Sbjct: 112 V 112
Score = 42.0 bits (97), Expect = 1e-05
Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
+ + + D + ++S SQ GK+ ++ T R + ++ AY+ G+++A G LD
Sbjct: 59 YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118
Query: 75 GIINIFDANTGHSSWVLSTAFT-----------RDGKFFISASADHTVRVWNFARRENMH 123
I +I++ T + +S D +++S D T +W+ +
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 124 TFKHADQ-VWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEV 165
TF V + +APD FVS D + ++ + +
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Score = 34.3 bits (77), Expect = 0.005
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
T + H +++ + D VS +D + ++ +V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 87.2 bits (214), Expect = 3e-21
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 34/179 (18%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-------LSIAYSTDGH 66
V D KY+ +GS + ++ ETG L + D+ + S+ ++ DG
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267
Query: 67 WIASGALDGIINIFDANTG--------------------HSSWVLSTAFTRDGKFFISAS 106
+ SG+LD + +++ H +VLS A T++ ++ +S S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 107 ADHTVRVWNFARRENMHTFK-HADQVWCVCVA------PDGDKFVSVGEDKAVHMYSYK 158
D V W+ + + H + V V VA P+ + F + D ++ YK
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 73.3 bits (178), Expect = 2e-16
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT------------LSIAYS 62
++VVF+ D + V+SGS + L+ ++ + T T LS+A +
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317
Query: 63 TDGHWIASGALDGIINIFDANT--------GHSSWVLSTAFTR------DGKFFISASAD 108
+ +I SG+ D + +D + GH + V+S A + F + S D
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 109 HTVRVWNFAR 118
R+W + +
Sbjct: 378 CKARIWKYKK 387
Score = 64.0 bits (154), Expect = 4e-13
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 28/193 (14%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
K + + D++++ + P ++SGS + ++ + TG+ T
Sbjct: 153 RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 212
Query: 61 YSTDGHWIASGALDGIINIFDANT---------------GHSSWVLSTAFTRDGKFFISA 105
DG +IA+G+LD + ++D+ T GH V S FTRDG+ +S
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 106 SADHTVRVWNFARREN-------------MHTFKHADQVWCVCVAPDGDKFVSVGEDKAV 152
S D +V++WN N + H D V V + + +S +D+ V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332
Query: 153 HMYSYKPEEEVEV 165
+ K + +
Sbjct: 333 LFWDKKSGNPLLM 345
Score = 53.6 bits (127), Expect = 2e-09
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
+V FSPD K++ +G++ I ++ +E K+ I + S+ Y G + SG+ D
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184
Query: 75 GIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
+ I+D TG DGK+ + S D VRVW+ +
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244
Query: 127 --------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
H D V+ V DG VS D++V +++ +
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284
Score = 46.7 bits (109), Expect = 3e-07
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 20/92 (21%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK------------------ 126
H+S V F+ DG++ + + T +V+ + +
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 127 -HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
+ VC +PDG + ED+ + ++
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150
Score = 40.6 bits (93), Expect = 4e-05
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 17/121 (14%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
V FS D +Y+ +G + +Y V G L A+ +
Sbjct: 66 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL--------------SDDSAANKDPE 110
Query: 75 GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCV 134
+ ++ ++ S F+ DGKF + + D +R+W+ R+ + + +Q
Sbjct: 111 NLNTS--SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168
Query: 135 C 135
Sbjct: 169 L 169
Score = 36.3 bits (82), Expect = 0.001
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 101 FFISASADHTVRVWNFARREN-----MHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
+ + ++N A + H V CV + DG ++++ G +K +Y
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVY 88
Query: 156 SYKPEEEV 163
V
Sbjct: 89 RVSDGSLV 96
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 86.3 bits (212), Expect = 3e-21
Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 29/184 (15%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
+ + V + D + S S + ++ V T + + I+
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192
Query: 61 Y--------------------STDGHWIASGALDGIINIFDANTG--------HSSWVLS 92
+ G ++ SG+ D I ++D +TG H +WV
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 93 TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKA 151
F GKF +S + D T+RVW++ + M T H V + V+ D+
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312
Query: 152 VHMY 155
V ++
Sbjct: 313 VKVW 316
Score = 60.9 bits (146), Expect = 4e-12
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 9/158 (5%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
V+F P ++S S+ I ++ ETG E+ I++ G +AS + D
Sbjct: 21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80
Query: 75 GIINIFDANTGHSSWVL--------STAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
I ++D + S + +G +SAS D T+++W + TF
Sbjct: 81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 140
Query: 127 -HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
H + V V DG S D+ V ++ +E
Sbjct: 141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178
Score = 56.3 bits (134), Expect = 2e-10
Identities = 9/80 (11%), Positives = 34/80 (42%)
Query: 2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
+ + + V+F K++LS + + ++ + + + + F S+ +
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297
Query: 62 STDGHWIASGALDGIINIFD 81
++ +G++D + +++
Sbjct: 298 HKTAPYVVTGSVDQTVKVWE 317
Score = 55.5 bits (132), Expect = 3e-10
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 84 TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP 138
+GH S V F +SAS D T++VW++ + T K H D V +
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Score = 35.9 bits (81), Expect = 0.002
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 112 RVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
+ W R + H V V P VS ED + ++ Y+ +
Sbjct: 1 KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE 52
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 67.9 bits (164), Expect = 2e-14
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVS 145
H S VLS F GK+F+S D+ + W ++ K + V ++ D V+
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT 323
Query: 146 VGEDKAVHMYS 156
DK +Y
Sbjct: 324 GSGDKKATVYE 334
Score = 64.1 bits (154), Expect = 4e-13
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
++++ + P +++ G +S + + V Q+ S+ ++ G W S
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL-SLKFAYCGKWFVSTG 284
Query: 73 LDGIINIFDANTG-------HSSWVLSTAFTRDGKFFISASADHTVRVWN 115
D ++N + G SS VLS + D K+ ++ S D V+
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 52.1 bits (123), Expect = 5e-09
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK------HADQVWCVCVAP 138
H V + + + + V+VW+ + N + + + P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 139 DGDKFVSVGEDKAVHMYSY 157
DG + GE + ++
Sbjct: 108 DGCTLIVGGEASTLSIWDL 126
Score = 44.4 bits (103), Expect = 2e-06
Identities = 13/131 (9%), Positives = 32/131 (24%), Gaps = 15/131 (11%)
Query: 18 VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGII 77
V + + I + + ++ S + +G G +
Sbjct: 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVC-AVTISNPTRHVYTGG-KGCV 74
Query: 78 NIFDANT-------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
++D + +++ S DG I T+ +W+ A
Sbjct: 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134
Query: 125 FKHADQVWCVC 135
+
Sbjct: 135 AELTSSAPACY 145
Score = 39.0 bits (89), Expect = 1e-04
Identities = 14/87 (16%), Positives = 29/87 (33%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
+S + S + G++ V V + + + H V + A G FV
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 281
Query: 145 SVGEDKAVHMYSYKPEEEVEVNGGGGE 171
S G+D ++ + + +
Sbjct: 282 STGKDNLLNAWRTPYGASIFQSKESSS 308
Score = 38.3 bits (87), Expect = 3e-04
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 90 VLSTAFTRDGKFF-ISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE 148
S T DG+ + D + ++T H + V V ++ + V G
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT-RHVYTGG 70
Query: 149 DKAVHMYS 156
V ++
Sbjct: 71 KGCVKVWD 78
Score = 36.7 bits (83), Expect = 8e-04
Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 6/126 (4%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGK-----LEQIFDTRGKFTLSIAYSTDGHWIA 69
V S ++V +G + G + ++ + + R + S DG +
Sbjct: 55 CAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI 113
Query: 70 SGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD 129
G ++I+D + + ++ S D V + H
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173
Query: 130 QVWCVC 135
+
Sbjct: 174 TLVRQF 179
Score = 30.5 bits (67), Expect = 0.087
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGV 40
+ S DDKY+++GS K +Y V
Sbjct: 310 LSCDISVDDKYIVTGSGDKKATVYEV 335
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 62.5 bits (150), Expect = 1e-12
Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 17/153 (11%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
D +V+SGS I ++ VETG T + + + SG
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN 234
Query: 73 LDGIINIFDANTGHSSWVLSTAFTRD---------GKFFISASADHTVRVWNFARRENMH 123
D + I+D TG L F I++S D TV++W+ E +
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 294
Query: 124 TFK------HADQVWCVCVAPDGDKFVSVGEDK 150
VW + + +
Sbjct: 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327
Score = 54.0 bits (128), Expect = 1e-09
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 84 TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK 142
GH V+ T G +S S D+T++VW+ + + T H VW + +
Sbjct: 13 KGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71
Query: 143 FVSVGEDKAVHMYSY 157
S V
Sbjct: 72 SGSTDRTLKVWNAET 86
Score = 50.6 bits (119), Expect = 2e-08
Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 10/158 (6%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
D + V+SG+ + ++ ET +G + DG + SG+L
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL--QGHTNRVYSLQFDGIHVVSGSL 195
Query: 74 DGIINIFDAN------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH 127
D I ++D T L++ +S +AD TV++W+ + + T +
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255
Query: 128 AD--QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
+ Q C+ + + ++ +D V ++ K E +
Sbjct: 256 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293
Score = 47.5 bits (111), Expect = 2e-07
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 18/122 (14%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-LSIAYSTDGHWIASG 71
D ++SG+ + ++ ++TG+ Q K + +++ +
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 72 ALDGIINIFDANTG-------------HSSWVLSTAFTRDGKFFISASADHT----VRVW 114
+ DG + ++D TG V + S + T + V
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Query: 115 NF 116
+F
Sbjct: 337 DF 338
Score = 45.2 bits (105), Expect = 1e-06
Identities = 30/195 (15%), Positives = 56/195 (28%), Gaps = 45/195 (23%)
Query: 18 VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD------------- 64
++SGS + ++ TGK + S +
Sbjct: 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKV 81
Query: 65 -------------------------GHWIASGALDGIINIFDANTGHSSWVL------ST 93
+ SG+ D + ++D TG VL
Sbjct: 82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141
Query: 94 AFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVH 153
DG+ +S + D V+VW+ +HT + + DG VS D ++
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY-SLQFDGIHVVSGSLDTSIR 200
Query: 154 MYSYKPEEEVEVNGG 168
++ + + G
Sbjct: 201 VWDVETGNCIHTLTG 215
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 61.0 bits (146), Expect = 4e-12
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 58 SIAYSTDGHWIASGALDGIINIFDANT----------GHSSWVLSTAFTRDGKFFISASA 107
A++ D IA + ++I++ + H+ V + D ++
Sbjct: 12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71
Query: 108 DHTVRVWNFARRENMHTFKHADQVWCVC 135
D VW R T
Sbjct: 72 DRNAYVWTLKGRTWKPTLVILRINRAAR 99
Score = 58.7 bits (140), Expect = 3e-11
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 83 NTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFA--RRENMHTFK-HADQVWCVCVAPD 139
++ + A+ +D +H V ++ + + +H K H QV V APD
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 140 GDKFVSVGEDKAVHMYSY 157
++ V+ G D+ ++++
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
Score = 55.2 bits (131), Expect = 5e-10
Identities = 13/143 (9%), Positives = 37/143 (25%), Gaps = 2/143 (1%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG--KFTLSIAYSTDGHWIASGALD 74
++ D + + ++++Y K Q+ + + + ++ D + I + D
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 75 GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCV 134
++ L + + + R + + W V
Sbjct: 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132
Query: 135 CVAPDGDKFVSVGEDKAVHMYSY 157
C +V
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVL 155
Score = 48.3 bits (113), Expect = 9e-08
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 13/161 (8%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
V FS + V S + L + + L++ + T+ +A+G D
Sbjct: 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-D 263
Query: 75 GIINIFDANTGHSSWVL--------STAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
+F ++ ++ + D A
Sbjct: 264 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323
Query: 127 HADQVWCVCVAPDGD----KFVSVGEDKAVHMYSYKPEEEV 163
H + V + V G +F + G D + ++ + E
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
Score = 32.9 bits (73), Expect = 0.017
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 123 HTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEV 165
H+F + + C D + + VH+Y + V+V
Sbjct: 3 HSF-LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV 44
Score = 32.1 bits (71), Expect = 0.029
Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 14/135 (10%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLY--GVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
V ++PD +++ ++ T K + + + ++ + A G+
Sbjct: 55 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 114
Query: 73 LDGIINIFDANTGHSSW------------VLSTAFTRDGKFFISASADHTVRVWNFARRE 120
+I+I + W VLS + + + S D R+++ +E
Sbjct: 115 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 174
Query: 121 NMHTFKHADQVWCVC 135
+
Sbjct: 175 VEERPAPTPWGSKMP 189
Score = 31.0 bits (68), Expect = 0.067
Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 5/115 (4%)
Query: 47 QIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISAS 106
+IF K T + ++ WV F+ +G S
Sbjct: 166 RIFSAYIKEVEERPAPTPWGSKMP-----FGELMFESSSSCGWVHGVCFSANGSRVAWVS 220
Query: 107 ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE 161
D TV + + ++ + T V+ G D +++Y
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA 275
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 60.6 bits (145), Expect = 7e-12
Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 77 INIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN----MHTFKHADQVW 132
+ I ++ + S D ++ V+ F + + + ++ +
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 133 CVCVAPDGDKFVSVGEDKAVHMYSY 157
C + D + VG + +
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVD 85
Score = 56.8 bits (135), Expect = 1e-10
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 19/137 (13%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
+ + + S G++ + + + R F
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR----------------- 239
Query: 74 DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
+ +T + V S F+ KF +A +D + WN R+ + F ++
Sbjct: 240 --CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297
Query: 134 VCVAPDGDKFVSVGEDK 150
V +A + D
Sbjct: 298 VKIACSDNILCLATSDD 314
Score = 44.1 bits (102), Expect = 3e-06
Identities = 6/89 (6%), Positives = 18/89 (20%), Gaps = 11/89 (12%)
Query: 58 SIAYSTDGHWIASGALDGIINIFDANT-----------GHSSWVLSTAFTRDGKFFISAS 106
I + + DG + ++ + + +L F + I
Sbjct: 16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 107 ADHTVRVWNFARRENMHTFKHADQVWCVC 135
+ ++
Sbjct: 76 TVQGEILKVDLIGSPSFQALTNNEANLGI 104
Score = 38.7 bits (88), Expect = 2e-04
Identities = 14/137 (10%), Positives = 31/137 (22%), Gaps = 4/137 (2%)
Query: 3 QISKINVGPVD-MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT---LS 58
QI +I P D + ++ P +L S G + +Y + ++ L
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 59 IAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR 118
+ + + G S+ T + +
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 119 RENMHTFKHADQVWCVC 135
+
Sbjct: 122 GLIEVIDPRNYGDGVIA 138
Score = 32.9 bits (73), Expect = 0.019
Identities = 4/37 (10%), Positives = 14/37 (37%)
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
D + + + P + D ++ +Y + + +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN 46
Score = 30.2 bits (66), Expect = 0.14
Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFA----------------RRENMHTFKHAD 129
++ + + +S D V V F R N+ A
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGE 171
V + +P + G D + ++ + ++++ E
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 56.3 bits (135), Expect = 2e-10
Identities = 22/199 (11%), Positives = 56/199 (28%), Gaps = 30/199 (15%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-----F 55
+ + ++ G + S +Y+ + GK+N+ + + + + +
Sbjct: 52 YEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110
Query: 56 TLSIAYSTDGHW-IASGALDGIINIFDA-------------------NTGHSSWVLSTAF 95
S + + IA I D V +
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 170
Query: 96 TRDGKFFI-SASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDK---FVSVGEDKA 151
+ FI + + + ++ N+ T + + + + DG +
Sbjct: 171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230
Query: 152 VHMYSYKPEEEVEVNGGGG 170
+ + K + V + GG
Sbjct: 231 LVVIDTKEGKLVAIEDTGG 249
Score = 41.3 bits (96), Expect = 3e-05
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 94 AFTRDGK--FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKA 151
D + F ++ + + + + E V ++ G +G D
Sbjct: 25 MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGK 84
Query: 152 VHMYSYKPEEEVEV 165
V+M +E V
Sbjct: 85 VNMIDLWMKEPTTV 98
Score = 27.5 bits (60), Expect = 1.1
Identities = 25/195 (12%), Positives = 56/195 (28%), Gaps = 50/195 (25%)
Query: 3 QISKINVGPVDMWNVVFSPDDKYVLSGS-QSGKINLYGVETGKLEQIFDTRGK-----FT 56
+ ++I+ + + +Y ++ + K+ + + GKL I DT G+
Sbjct: 199 KTTEISAERF-LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 257
Query: 57 LSIAYSTDGHWIASGAL-DGIINIFDANT----GHSSWVLSTAFTR-------------- 97
+ + T G A+ + D + + + ++ +L +
Sbjct: 258 ANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ 317
Query: 98 ---------------------DGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCV 136
D K +D + A + +V
Sbjct: 318 YLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG--ITEGQPRVVQGEF 375
Query: 137 APDGDK-FVSVGEDK 150
DG + + SV K
Sbjct: 376 NKDGTEVWFSVWNGK 390
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 56.4 bits (134), Expect = 2e-10
Identities = 12/135 (8%), Positives = 33/135 (24%), Gaps = 11/135 (8%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGK-------INLYGVETGKLEQIFDTRG 53
+ + I + P P +G ++ ++
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276
Query: 54 KFTLSIAYSTDGHWIASGALDGIINIFDANTG----HSSWVLSTAFTRDGKFFISASADH 109
+ + G++ +D T + + + D K + D
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 110 TVRVWNFARRENMHT 124
+ + + E+ T
Sbjct: 337 KIYTFPLEKPEDERT 351
Score = 47.5 bits (111), Expect = 2e-07
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
Y + G + Y V+T K+ ++ + + S D + DG I
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN----NLTDLRLSADRKTVMVRKDDGKIY 339
Query: 79 IFDANTGHSSWVLSTAFTR 97
F + T
Sbjct: 340 TFPLEKPEDERTVETDKRP 358
Score = 41.0 bits (94), Expect = 3e-05
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 9/85 (10%)
Query: 63 TDGHWIASGALDGIINIFDANTG------HSSWVLSTAFTRDGKFFISASADH--TVRVW 114
DG IA + G I D + + D K + ++
Sbjct: 13 LDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY 71
Query: 115 NFARRENMHTFKHADQVWCVCVAPD 139
++ + ++ V+ + V +
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRN 96
Score = 38.7 bits (88), Expect = 2e-04
Identities = 16/149 (10%), Positives = 39/149 (26%), Gaps = 12/149 (8%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG--I 76
FSP D +++ G+ + V + ++ + D
Sbjct: 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDF 67
Query: 77 INIFDANTG-------HSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFKHA 128
+ I+D TG + V + R+ ++ + V + +
Sbjct: 68 LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 127
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
+ ++ + K Y
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHGETDGY 156
Score = 36.0 bits (81), Expect = 0.002
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT 51
++ ++ S D K V+ GKI + +E + E+ +T
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354
Score = 32.1 bits (71), Expect = 0.030
Identities = 13/161 (8%), Positives = 26/161 (16%), Gaps = 19/161 (11%)
Query: 15 WNVVFSPDDKYVLSGSQSGK--INLYGVETGKLEQIFD-----------------TRGKF 55
V D K + +Y TGK E+ +
Sbjct: 46 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND 105
Query: 56 TLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
I + + T + + V++
Sbjct: 106 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 165
Query: 116 FARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
R+ + D +
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 55.3 bits (131), Expect = 5e-10
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 84 TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK 142
GH + V+ T + + I+ + D +RV++ ++ + H VW + A G
Sbjct: 9 RGHMTSVI-TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-I 66
Query: 143 FVSVGEDKAVHMYSY 157
VS D+ V ++
Sbjct: 67 LVSGSTDRTVRVWDI 81
Score = 50.7 bits (119), Expect = 2e-08
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 18 VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----- 72
+D YV++G+ I +Y K ++ Y+ G ++
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77
Query: 73 ----LDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA 128
G + L ++ K+ ++ S D+T+ VW + ++
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137
Query: 129 DQVWCVCVAP 138
V P
Sbjct: 138 HDYPLVFHTP 147
Score = 44.1 bits (102), Expect = 3e-06
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF--KHADQVWCVCVAPDGDKF 143
H + + + + + +++ ++N + +H K ADQ+W V
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 338
Query: 144 VSVGEDKAVHMYSY 157
+V +D +
Sbjct: 339 AAVEKDGQSFLEIL 352
Score = 39.1 bits (89), Expect = 1e-04
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 11/66 (16%)
Query: 58 SIAYSTDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFTRDGKFFISASAD 108
+ + + SG+ + NI++ +G + + S F + D
Sbjct: 287 ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKD 344
Query: 109 HTVRVW 114
+
Sbjct: 345 GQSFLE 350
Score = 29.9 bits (65), Expect = 0.19
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
H V C+ + + ++ +DK + +Y ++ +
Sbjct: 11 HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFL 46
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 54.9 bits (130), Expect = 5e-10
Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 21/120 (17%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
D+ V+SGS I L+ +E G ++ + G L D I SGA
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRFDNKRIVSGA 235
Query: 73 LDGIINIFDANT-----------------GHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
DG I ++D HS V F D +S+S D T+ +W+
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
Score = 54.1 bits (128), Expect = 1e-09
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 20/158 (12%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
V DDKY++S S I ++ T + + + G + SG+
Sbjct: 139 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSS 196
Query: 74 DGIINIFDANT------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
D I ++D L D K +S + D ++VW+ +
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256
Query: 127 ---------HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
H+ +V+ + D + VS D + ++
Sbjct: 257 TLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIW 292
Score = 46.0 bits (107), Expect = 6e-07
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 77 INIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVC 135
+ + S V D + +S D+T+++W+ E H V C+
Sbjct: 5 LQRIHCRSETSKGV--YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62
Score = 36.4 bits (82), Expect = 0.001
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 64 DGHWIASGALDGIINIFDANTGHSSWVLSTA------FTRDGKFFISASADHTVRVWNFA 117
D +I S + D I +++ +T L+ + +S S+D+T+R+W+
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 206
Query: 118 RRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG 169
+ + +++ D + VS D + ++ + G
Sbjct: 207 CGACLRVLEGHEELVRCIR-FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 257
Score = 36.4 bits (82), Expect = 0.001
Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 6/156 (3%)
Query: 19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST----DGHWIASGALD 74
DD+ ++SG + I ++ T + ++I L + Y G ++ +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 75 GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN--MHTFKHADQVW 132
+ NT + ++ S D ++ VW+ A + + +
Sbjct: 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140
Query: 133 CVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG 168
V D VS D+ + +++ E V G
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176
Score = 27.9 bits (60), Expect = 0.61
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 126 KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
+ + V+C+ D K VS D + ++ E
Sbjct: 13 ETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECK 48
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 54.6 bits (129), Expect = 6e-10
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCV 136
GH+ + + + + DGK SA A+ + W+ + + F HA + +
Sbjct: 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Score = 45.0 bits (104), Expect = 1e-06
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 66 HWIASGALDGIINIFDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWN 115
+A+G+LD + +++ N H+ +++ + +SA D ++ WN
Sbjct: 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 40.7 bits (93), Expect = 4e-05
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 101 FFISASADHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
+ S D++V VWN + + HA + + VS G+D + ++
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 38.0 bits (86), Expect = 3e-04
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 1/120 (0%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF-DTRGKFTLSIAYSTDGHWIASGAL 73
+ S D K + S G IN + + TG ++F D I ++ G
Sbjct: 16 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD 75
Query: 74 DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
D + + +G S ++ SAD + V + +++ +V
Sbjct: 76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 135
Score = 36.9 bits (83), Expect = 7e-04
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG--KFTLSIAYSTDGHWIASG 71
+ V +SPD+ + +GS + ++ + I +++ + I S
Sbjct: 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA 286
Query: 72 ALDGIINIFD 81
D I ++
Sbjct: 287 GQDSNIKFWN 296
Score = 34.6 bits (77), Expect = 0.004
Identities = 5/43 (11%), Positives = 12/43 (27%)
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG 169
H + + + DG S + ++ + V
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53
Score = 28.4 bits (61), Expect = 0.49
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGV 40
I + N V ++ ++S Q I + V
Sbjct: 259 HPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 53.6 bits (127), Expect = 2e-09
Identities = 16/131 (12%), Positives = 38/131 (29%), Gaps = 13/131 (9%)
Query: 50 DTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFTRDGK 100
+ D A+ L D TG + + +
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264
Query: 101 FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY---SY 157
I + + ++ +R+ + +CV GDK G + ++ +
Sbjct: 265 NQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323
Query: 158 KPEEEVEVNGG 168
+ + +++ GG
Sbjct: 324 EKVKNIKLPGG 334
Score = 47.4 bits (111), Expect = 2e-07
Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 31/183 (16%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWI-ASGALD 74
+Y++ + +++ V + + + + + D
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 75 GIINIFDANTG--------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE 120
G I D +T + S A + DGK + ++ +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 121 NM---------------HTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEV 165
TF QV+ + A DG +V+ + + + + K + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 166 NGG 168
Sbjct: 182 RNW 184
Score = 45.5 bits (106), Expect = 9e-07
Identities = 9/89 (10%), Positives = 23/89 (25%), Gaps = 3/89 (3%)
Query: 94 AFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDK-FVSVGEDK 150
A ++ I + + + V + A + +APD +V
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62
Query: 151 AVHMYSYKPEEEVEVNGGGGEEEEEEQMV 179
++ + E + +
Sbjct: 63 DIYGIDLDTCKNTFHANLSSVPGEVGRSM 91
Score = 36.3 bits (82), Expect = 0.001
Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 26/169 (15%)
Query: 15 WNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFD------TRGKFTLSIAYSTDGHW 67
+ +PD++ + G I ++T K + G+ S A S DG
Sbjct: 43 GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE 102
Query: 68 IASGALD------------GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTV---- 111
+ + + +F G + + T + + A+ D ++
Sbjct: 103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 162
Query: 112 ---RVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
+ + + APD F + Y
Sbjct: 163 PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 211
Score = 35.1 bits (79), Expect = 0.003
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG 53
+ V F + G + ++ +T + + G
Sbjct: 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 51.8 bits (122), Expect = 7e-09
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKF 143
HS V ++ DG SASAD T+++WN A + T + + +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296
Query: 144 VSVGEDKAVHMY 155
VS+ + ++
Sbjct: 297 VSISANGFINFV 308
Score = 47.2 bits (110), Expect = 2e-07
Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 2/72 (2%)
Query: 90 VLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGE 148
+ T G + +V + + H+ Q +P G S
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 149 DKAVHMYSYKPE 160
V ++
Sbjct: 79 HGNVRIWDTTQT 90
Score = 47.2 bits (110), Expect = 3e-07
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 60 AYSTDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFTRDGKFFISASADHT 110
+S DG IAS + D I I++ T + +S SA+
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 111 VRVWN 115
+ N
Sbjct: 305 INFVN 309
Score = 46.0 bits (107), Expect = 5e-07
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 13/99 (13%)
Query: 51 TRGKFTLSIAYSTDGHWIASGALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFF 102
RG + + + G I + T HS + G +
Sbjct: 16 ARGT-AVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC 73
Query: 103 ISASADHTVRVWNFARRENMHTFK---HADQVWCVCVAP 138
S VR+W+ + ++ + V +
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112
Score = 45.7 bits (106), Expect = 7e-07
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-LSIAYSTDGHWIASGA 72
++ + +SPD + S S I ++ V T K+E+ + + + S +
Sbjct: 241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 300
Query: 73 LDGIINIFD 81
+G IN +
Sbjct: 301 ANGFINFVN 309
Score = 41.8 bits (96), Expect = 2e-05
Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 1/120 (0%)
Query: 16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
+ +P + + + V + +I+ T S G++ ASG + G
Sbjct: 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80
Query: 76 IINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVC 135
+ I+D + IS ++ RE D
Sbjct: 81 NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140
Score = 26.8 bits (57), Expect = 1.4
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 109 HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
+++ H+ V+ + +PDG K S DK + +++
Sbjct: 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 268
Score = 25.6 bits (54), Expect = 4.1
Identities = 12/121 (9%), Positives = 21/121 (17%), Gaps = 4/121 (3%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
SP Y SG G + ++ D W +
Sbjct: 62 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS----GPVKDISWDSESKRI 117
Query: 75 GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCV 134
+ GH + + A + R +
Sbjct: 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177
Query: 135 C 135
Sbjct: 178 P 178
Score = 25.6 bits (54), Expect = 4.4
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 2 KQISKINVG-PVDMWNVVFSPDDKYVLSGSQSGKINLYGVE 41
K I VG ++ + + ++S S +G IN E
Sbjct: 271 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 50.6 bits (119), Expect = 2e-08
Identities = 18/162 (11%), Positives = 34/162 (20%), Gaps = 22/162 (13%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL------------EQI 48
I+ V + K SG Q
Sbjct: 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253
Query: 49 FDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-------HSSWVLSTAFTRDGK- 100
+ + DA TG + S ++D K
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP 313
Query: 101 -FFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDG 140
+ ++ D T+ + + E + + + A G
Sbjct: 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
Score = 34.0 bits (76), Expect = 0.007
Identities = 18/190 (9%), Positives = 45/190 (23%), Gaps = 39/190 (20%)
Query: 2 KQISKINVGPVDMWNVVFSPDDKYVL----------SGSQSGKINLYGVETGKLEQIFD- 50
+ I I+ G + N V + D ++ G ++ + ++ T +
Sbjct: 39 RVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL 96
Query: 51 ------TRGKFTLSIAYSTDGHWI--ASGALDGIINIFDANTG---------------HS 87
G + + + DG + + + + D +
Sbjct: 97 PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT 156
Query: 88 SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG 147
+ RDG A + + + + + V
Sbjct: 157 APDTFFMHCRDGSLAKVAFGTEGTPEI---THTEVFHPEDEFLINHPAYSQKAGRLVWPT 213
Query: 148 EDKAVHMYSY 157
+H
Sbjct: 214 YTGKIHQIDL 223
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 49.2 bits (116), Expect = 4e-08
Identities = 19/182 (10%), Positives = 43/182 (23%), Gaps = 32/182 (17%)
Query: 2 KQISKINVGPVDMWNVVFSPDDKYVL----------SGSQSGKINLYGVETGKLEQIFDT 51
K + +I+ G +PD K + G+++ + + T
Sbjct: 9 KLLGQIDGGFG--PGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVI 66
Query: 52 RGKFTLSI------AYSTDGHWIASGALDGIINIFDANTG------HSSWVLSTAFTRDG 99
K + A+S DG + + ++ + G
Sbjct: 67 PAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEIDTAACVLAYPAG 126
Query: 100 KF-FISASAD-HTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKF----VSVGEDKA 151
F + + V A + V + ++ +
Sbjct: 127 DDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGN 186
Query: 152 VH 153
V
Sbjct: 187 VR 188
Score = 42.7 bits (99), Expect = 9e-06
Identities = 27/136 (19%), Positives = 36/136 (26%), Gaps = 28/136 (20%)
Query: 40 VETGKLEQIFDTRGKFTLSIAYSTDGHWIA----------SGALDGIINIFDANTG---- 85
+ KL D G F A + D G ++ I D T
Sbjct: 5 ADAKKLLGQID--GGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAG 62
Query: 86 ----HSSWVLS------TAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVC 135
+ TAF+ DGK A+ V D CV
Sbjct: 63 EIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKML-SEIDTAACVL 121
Query: 136 VAPDGDK-FVSVGEDK 150
P GD F ++ E
Sbjct: 122 AYPAGDDRFTALCESG 137
Score = 28.0 bits (61), Expect = 0.58
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 17 VVFSPDDKYVL--SGSQSGKINLYGVETGKLEQIFDTRGKFTLSI 59
+ S DDK + + S + + TG L+ + G + +
Sbjct: 278 IQVSEDDKPLFYGLTATSDLV-VMDARTGALQHVEKQIGNTSSLL 321
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 48.8 bits (115), Expect = 8e-08
Identities = 14/181 (7%), Positives = 26/181 (14%), Gaps = 35/181 (19%)
Query: 10 GPVDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWI 68
G ++ L +G + G + + G F G
Sbjct: 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDF 79
Query: 69 A----------SGALDGIINIFDANTGHSSWVL---------------STAFTRDGKF-F 102
A G + +FD T +
Sbjct: 80 ALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL 139
Query: 103 ISASADHTVRVWNFARRENMHTFK--------HADQVWCVCVAPDGDKFVSVGEDKAVHM 154
+ + K + S
Sbjct: 140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199
Query: 155 Y 155
Sbjct: 200 G 200
Score = 45.7 bits (107), Expect = 7e-07
Identities = 17/184 (9%), Positives = 43/184 (23%), Gaps = 34/184 (18%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI 76
+ S S + V Q + + + + G + + A +
Sbjct: 179 YLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLVWAVASSIL 234
Query: 77 INIFDANT--------GHSSWVLSTAFTRDGKFFISASAD-------------------H 109
A G+ S + F G ++ +
Sbjct: 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294
Query: 110 TVRVWNFARRENMHTFKHADQVWCVCVAPDGDK--FVSVGEDKAVHMYSYKPEEEV-EVN 166
+ + + + A DG + + + + +Y +++ V
Sbjct: 295 NTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354
Query: 167 GGGG 170
G
Sbjct: 355 LDKG 358
Score = 36.1 bits (82), Expect = 0.001
Identities = 9/87 (10%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 62 STDGHWIASGALDGIINIFDANTG-------HSSWVLSTAFTRDGK--FFISASADHTVR 112
T H + A + A+ G + + +DG + +++ +
Sbjct: 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD 340
Query: 113 VWNFARRENMHTFKHADQVWCVCVAPD 139
+++ A ++ + + + V +
Sbjct: 341 IYDAASDQDQSSVELDKGPESLSVQNE 367
Score = 29.6 bits (65), Expect = 0.23
Identities = 2/39 (5%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 15 WNVVFSPDDKYVL--SGSQSGKINLYGVETGKLEQIFDT 51
++ + D + + + +++Y + + + +
Sbjct: 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 47.6 bits (111), Expect = 2e-07
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF---KHADQVWCVCVAPDGDK 142
+ D + F + AD T+RVW+ + + + K V V G+
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 309
Query: 143 F-VSVGEDKAVHMY 155
+S+ D ++ Y
Sbjct: 310 RIISLSLDGTLNFY 323
Score = 44.9 bits (104), Expect = 1e-06
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 24/117 (20%)
Query: 51 TRGKFTLSIAYSTDGHWIASGALDG-IINIFDANTG-----------HSSWVLSTAF--T 96
R T ++Y + IA + D SS V + F
Sbjct: 16 QRNFTT-HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 74
Query: 97 RDGKFFISASADHTVRVWNFARRENMHTFK---------HADQVWCVCVAPDGDKFV 144
+ ++ S V VW + + ++ + A + + +G +
Sbjct: 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131
Score = 42.2 bits (97), Expect = 1e-05
Identities = 11/67 (16%), Positives = 16/67 (23%), Gaps = 11/67 (16%)
Query: 60 AYSTDGHWIASGALDGIINIFDANTG----------HSSWVLSTAFT-RDGKFFISASAD 108
D A+ D I ++D T IS S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 109 HTVRVWN 115
T+ +
Sbjct: 318 GTLNFYE 324
Score = 40.3 bits (92), Expect = 6e-05
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF----DTRGKFTLSIAYSTDGHWIA 69
+ D + + I ++ V T K Q + G + + + +G I
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-II 312
Query: 70 SGALDGIINIFD 81
S +LDG +N ++
Sbjct: 313 SLSLDGTLNFYE 324
Score = 25.3 bits (53), Expect = 5.0
Identities = 7/59 (11%), Positives = 17/59 (28%)
Query: 114 WNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGEE 172
+ + D KF +VG D + ++ + V+ ++
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 47.5 bits (111), Expect = 2e-07
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 16/93 (17%)
Query: 85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN-------MHTFKHADQVWCVCV- 136
H + + S + F +S S D ++VW+ +N F H + V V
Sbjct: 12 AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 137 ------APDGDKFVSVGEDKAVHMYSYKPEEEV 163
A + + + Y E+E
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDET 102
Score = 45.6 bits (106), Expect = 9e-07
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQV----WCVCVAPDG 140
HSSWV+S +F G+ SA D +R W+ +E + T H D + + V G
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 141 DKFVSVG 147
D G
Sbjct: 348 DSLAEPG 354
Score = 42.5 bits (98), Expect = 1e-05
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 11/108 (10%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF----DTRGKFTLSIAYSTDGHWIA 69
+ ++ F+ + + S GK+ + V+T + D +A G +A
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351
Query: 70 SGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFA 117
+ + + S + D ++R + A
Sbjct: 352 EPGVFDVKFLKKG-------WRSGMGADLNESLCCVCLDRSIRWFREA 392
Score = 41.8 bits (96), Expect = 2e-05
Identities = 14/156 (8%), Positives = 35/156 (22%), Gaps = 37/156 (23%)
Query: 20 SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI 79
S + + +S S G + ++ + E +YS H +
Sbjct: 21 SACNSFTVSCSGDGYLKVWDNKLLDNE--------NPKDKSYSHFVHKSGLHHV------ 66
Query: 80 FDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-----------HA 128
+ + S + + R +
Sbjct: 67 -------DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119
Query: 129 DQVWCVCVAPDGD-----KFVSVGEDKAVHMYSYKP 159
W + D + V+ +++ + P
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155
Score = 36.0 bits (81), Expect = 0.001
Identities = 21/204 (10%), Positives = 53/204 (25%), Gaps = 51/204 (25%)
Query: 4 ISKINVGPVDMWNVV--FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
+ K + VD+ + + + V + S SG + Y + + L
Sbjct: 58 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM 117
Query: 62 STDGHW---------------IASGALDGIINIFDANTG--------------------- 85
W + + + G I+ +
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177
Query: 86 -----HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-------KHADQVWC 133
S + S + G + + TV++ + ++ F +++ +
Sbjct: 178 ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236
Query: 134 VCVAPDGDKFVSVGEDKAVHMYSY 157
V +P G + + +
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITL 260
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 47.3 bits (110), Expect = 2e-07
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 58 SIAYSTDGHWIASGALDGIINIFDANT---------GHSSWVLSTAFTRDGKFFISASAD 108
+ + +A+G+LD I I+ H V + + +S+ AD
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 278
Query: 109 HTVRVWN 115
++ WN
Sbjct: 279 ACIKRWN 285
Score = 44.6 bits (103), Expect = 2e-06
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKF 143
+ + + + S D + +++ R + H D V +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL 272
Query: 144 VSVGEDKAVHMYS 156
VS G D + ++
Sbjct: 273 VSSGADACIKRWN 285
Score = 43.4 bits (100), Expect = 4e-06
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 84 TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDG 140
+GH+ + + IS S D + W+ + H+ + + + +
Sbjct: 10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS----NLIVSLDNSKAQ 58
Score = 34.9 bits (78), Expect = 0.004
Identities = 10/99 (10%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 42 TGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT---GHSSWVLSTAFTRD 98
++ + K ++ + + SG+ DG I + +++ HS+ ++S ++
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57
Query: 99 GKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVA 137
++ + D +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV 96
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 47.3 bits (111), Expect = 3e-07
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 94 AFTRDGK--FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKA 151
D F ++ + + + ++ + V ++ G + +G D
Sbjct: 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDAR 84
Query: 152 VHMYSYKPEEEVEV 165
+ M +E +V
Sbjct: 85 IDMIDLWAKEPTKV 98
Score = 44.6 bits (104), Expect = 2e-06
Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 16/172 (9%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-----F 55
K + I+ G + S +Y+L + +I++ + + ++ + +
Sbjct: 52 KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110
Query: 56 TLSIAYSTDGHW-IASGALDGIINIFDANTGHSSWVL---------STAFTRDGKFFISA 105
S + + IA I D T ++ T I A
Sbjct: 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170
Query: 106 SADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
S +H + N + + D + F++ G + H Y
Sbjct: 171 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFM 222
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 45.6 bits (106), Expect = 9e-07
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 10/130 (7%)
Query: 50 DTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRD-------GKFF 102
+ T D A + D TG +
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT 253
Query: 103 ISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY---SYKP 159
+ A + + ++ + ++ + V V+ DG G + Y + +
Sbjct: 254 RAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
Query: 160 EEEVEVNGGG 169
+ +V++ G
Sbjct: 314 KGQVDLPGNA 323
Score = 42.1 bits (97), Expect = 1e-05
Identities = 22/168 (13%), Positives = 40/168 (23%), Gaps = 27/168 (16%)
Query: 15 WNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFD-----TRGKFTLSIAYSTDGHWI 68
+ +P + + ++S + + TG+ D R K A S DG +
Sbjct: 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTL 96
Query: 69 ASGALDGIINIFDANTGHS-------------------SWVLSTAFTRDGKFFISASADH 109
A + + + + A+ RDG D
Sbjct: 97 AIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL 156
Query: 110 TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
V + PD + E V +
Sbjct: 157 HVMDPE--AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPF 202
Score = 39.4 bits (90), Expect = 1e-04
Identities = 8/111 (7%), Positives = 30/111 (27%), Gaps = 17/111 (15%)
Query: 67 WIASGALDGIINIFDANTG----------HSSWVLSTAFTRDGKF-FISASADHTVRVWN 115
+I + A + + D + G+ + + + ++ +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 116 FARRENMHTFK------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE 160
E + ++ ++PDG + + ++ +
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113
Score = 37.9 bits (86), Expect = 3e-04
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
++V S D V G G + Y ET + + D G ++S+A
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
Score = 36.7 bits (83), Expect = 8e-04
Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 100 KFFISASADHTVRVWNFARRENMHTFKHADQ---VWCVCVAPDGDK-FVSVGEDKAVHMY 155
+ ++ + + V + + AD VAP G + +V + +++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 156 SYKPEEEVEVNGGGG 170
E +
Sbjct: 62 DLVTGETLGRIDLST 76
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 41.4 bits (95), Expect = 2e-05
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 102 FISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDK-FVSVGEDKAVHMYS 156
+I+ S + V + + T ++PDG K +V+ V +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIID 60
Score = 37.5 bits (85), Expect = 4e-04
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 86 HSSWVLSTAFTRDGKF-FISASADHTVRVWNFARRENMHTFKHADQVW 132
A T DGK +++ S +TV V + A T +
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPY 289
Score = 36.0 bits (81), Expect = 0.002
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 70 SGALDGIINIFDANTG-------HSSWVLSTAFTRDGKF-FISASADHTVRVWNFARREN 121
+ + I++ D + S + + DG +++ + + V + + A
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 122 MHTFKHADQVWCVC 135
+ T V
Sbjct: 67 IATVPAGSSPQGVA 80
Score = 34.1 bits (76), Expect = 0.007
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDT 51
K ++I VGP D + +PD K V + S +++ T +
Sbjct: 234 NKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284
Score = 30.2 bits (66), Expect = 0.13
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Query: 11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWI-A 69
P + +++ T K+ G IA + DG +
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYV 260
Query: 70 SGALDGIINIFDANTG 85
+ + +++ D T
Sbjct: 261 ALSFCNTVSVIDTATN 276
Score = 27.5 bits (59), Expect = 0.86
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSI 59
K + I VG + V SPD V + + S +++ T +
Sbjct: 22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80
Query: 60 AYSTDGHW 67
Sbjct: 81 VSPDGKQV 88
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 41.4 bits (97), Expect = 2e-05
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 10/138 (7%)
Query: 23 DKYVL--SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF 80
D+Y SG G++ + GV + + + + T+ S + G +
Sbjct: 9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITN----ESKEILGGDQQY 64
Query: 81 DANTGHSSWVLSTAFTRDGKF-FISASADHTVRVWNFA--RRENMHTFKHADQVWCVCVA 137
H + T DGK+ FI+ A+ V + + + + + + +
Sbjct: 65 LNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQ 124
Query: 138 PDGDK-FVSVGEDKAVHM 154
+V + +
Sbjct: 125 KVPKTNYVFCNAEFVIPQ 142
Score = 39.5 bits (92), Expect = 1e-04
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 41/161 (25%)
Query: 2 KQISKINVGPVDMWNVVFSPDDKY-VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
+ I V + + SPD KY + +G S +++ ++ KL+ +F+ + + +I
Sbjct: 249 EFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAID--KLDDLFEDKIELRDTIV 305
Query: 61 YSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFA--- 117
+ L T F G + + D V WN A
Sbjct: 306 AEPELGLGP---------------------LHTTFDGRGNAYTTLFIDSQVCKWNIADAI 344
Query: 118 ------------RRENMHTFK-HADQVWCVCVAPDGDKFVS 145
++ ++ H DG V
Sbjct: 345 KHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV 385
Score = 35.7 bits (82), Expect = 0.002
Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 14/128 (10%)
Query: 1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
M ++ V ++ N KY S + + + T + ++ + A
Sbjct: 166 MDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224
Query: 61 YSTDGHWIASGALDGIINIFDA---------NTGHSSWVLSTAFTRDGKFFI-SASADHT 110
G++ G + + + + DGK+FI + T
Sbjct: 225 AVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPH--GLNTSPDGKYFIANGKLSPT 281
Query: 111 VRVWNFAR 118
V V +
Sbjct: 282 VSVIAIDK 289
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 37.9 bits (86), Expect = 3e-04
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 102 FISASADHTVRVWNFARRENM---HTFKHADQVWCVCVAPDGDK-FVSVGEDKAVHMYSY 157
+I++ + VWN + QV + V+PD +V V + V Y
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66
Query: 158 KPEEE 162
P++
Sbjct: 67 APDDG 71
Score = 35.2 bits (79), Expect = 0.003
Identities = 9/101 (8%), Positives = 25/101 (24%), Gaps = 15/101 (14%)
Query: 70 SGALDGIINIFDANT----------GHSSWVLSTAFTRDGKF-FISASADHTVRVWNFAR 118
+ I++++ N V + D ++ ++ + V + A
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 119 RENMHTFKHADQV----WCVCVAPDGDKFVSVGEDKAVHMY 155
+ TF + + G +
Sbjct: 69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109
Score = 29.4 bits (64), Expect = 0.26
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 15 WNVVFSPDDKYVL-SGSQSGKINLYGV--ETGKLEQI 48
KY++ +G +S I++Y + E G L +
Sbjct: 279 RGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315
Score = 28.3 bits (61), Expect = 0.50
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 49 FDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISA-SA 107
G+ + + + S + DG + + + GK+ I+A
Sbjct: 237 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK 296
Query: 108 DHTVRVWNF 116
H + V+
Sbjct: 297 SHHISVYEI 305
Score = 27.1 bits (58), Expect = 1.2
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 5/125 (4%)
Query: 15 WNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTR---GKFTLSIAYSTDGHWIAS 70
+V SPD +Y+ ++ Y + F I+ G ++
Sbjct: 40 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFV 99
Query: 71 GALD-GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD 129
G+ + G +++ G V+ DG + S D+ +++ + F +D
Sbjct: 100 GSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159
Query: 130 QVWCV 134
V
Sbjct: 160 DGHLV 164
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 33.1 bits (74), Expect = 0.013
Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 53 GKFTLSIAYSTDGHWIASGALDGIINIFDANT------GHSSWVLSTAFTRDGKFFISAS 106
F ++A + DG + G I + V AFT +G +
Sbjct: 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGW 86
Query: 107 ADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE 160
++ V + + + D ++ + P D + ++
Sbjct: 87 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 142
Score = 31.9 bits (71), Expect = 0.032
Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 5/145 (3%)
Query: 11 PVDMW--NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWI 68
PV+ + N+ +PD ++ + G+I + +QI T +A++++G +
Sbjct: 25 PVNTFLENLASAPDGTIFVTNHEVGEI--VSITPDGNQQIHATVEGKVSGLAFTSNGDLV 82
Query: 69 ASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA 128
A+G I + V + D F + +
Sbjct: 83 ATGWNADSIPVVSLVK-SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 141
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVH 153
Q S E
Sbjct: 142 VQPSGSIWLEHPMLARSNSESVFPA 166
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 450
Score = 33.1 bits (74), Expect = 0.016
Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 17/175 (9%)
Query: 15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT--------LSIAYSTDGH 66
+++ PD++ L+ +GKI E+G ++ +F L A+ D
Sbjct: 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK 89
Query: 67 WIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
+ I I S + + + T+ +
Sbjct: 90 N------NPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD 143
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGEEEEEEQMVTP 181
H Q + + PD + ++G D+ + +Y + +E + T
Sbjct: 144 H--QSGRLVIGPDQKIYYTIG-DQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTY 195
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 29.2 bits (64), Expect = 0.26
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG 71
V ++ + G+I Y TG + R +T G + G
Sbjct: 432 VGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAV-WGGTMATAGDLVFYG 490
Query: 72 ALDGIINIFDANTGHSSW 89
LDG + D++TG W
Sbjct: 491 TLDGYLKARDSDTGDLLW 508
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 582
Score = 29.2 bits (64), Expect = 0.29
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 10/109 (9%)
Query: 8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHW 67
V + + G + +GK+ + +T G+
Sbjct: 441 EVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL-WAGVLATAGNL 499
Query: 68 IASGALDGIINIFDANTGHSSWVLST---------AFTRDGKFFISASA 107
+ +G DG FDA +G W T + +DG+ ++ +
Sbjct: 500 VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 573
Score = 28.8 bits (63), Expect = 0.39
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 33 GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSW 89
G++ + K + +T G+ + G DG + + A TG W
Sbjct: 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 28.8 bits (63), Expect = 0.43
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 62 STDGHWIASGALDGIINIFDANTGHSSWVLST---------AFTRDGKFFIS-ASADHTV 111
ST G+ + G G ++ + A+ G + W F G+ +++ + V
Sbjct: 466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGV 525
Query: 112 RVWNFARRENMHTFKHADQVW 132
N+ K+ ++
Sbjct: 526 ATLTGGESMNLPGMKNRSRLL 546
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
{Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 571
Score = 28.4 bits (62), Expect = 0.51
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 28 SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS 87
+ + G+I + + TGK + T G + LDG + D G
Sbjct: 439 TKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497
Query: 88 SW 89
W
Sbjct: 498 LW 499
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 28.1 bits (61), Expect = 0.51
Identities = 14/125 (11%), Positives = 30/125 (24%), Gaps = 6/125 (4%)
Query: 17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD-- 74
+ F + L G I ET ++++ F + +I DG D
Sbjct: 45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFK 104
Query: 75 --GIINIFDANTGHSSWVLSTA--FTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ 130
G I N + ++ + + + +
Sbjct: 105 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP 164
Query: 131 VWCVC 135
+
Sbjct: 165 DFRTV 169
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein
6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 465
Score = 27.6 bits (60), Expect = 0.89
Identities = 18/166 (10%), Positives = 33/166 (19%), Gaps = 37/166 (22%)
Query: 4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKI---------NLYGVETGKLEQIFDTRGK 54
I + + SPD +Y L I L + G + +
Sbjct: 53 IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112
Query: 55 --FTLSIAYSTDGHWIASGALDGIINIFDANT----------------GHSSWVLSTAFT 96
+ G + + I G S W+
Sbjct: 113 NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172
Query: 97 R---------DGKFFISASAD-HTVRVWNFARRENMHTFKHADQVW 132
+ DG A+ + V + +
Sbjct: 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 27.8 bits (60), Expect = 0.90
Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 8/145 (5%)
Query: 5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD 64
S + + + SPD +++L K + I+D + ++ +
Sbjct: 55 STFDEFGHSINDYSISPDGQFILLEYNYVKQ--WRHSYTASYDIYDLNKRQLITEERIPN 112
Query: 65 GHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
+ + G + + +V + + D E
Sbjct: 113 NTQWVTWSPVG--HKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170
Query: 125 FKHADQVWCVCVAPDGDKFVSVGED 149
++ W P+G +
Sbjct: 171 SAYSALWWS----PNGTFLAYAQFN 191
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 27.3 bits (59), Expect = 1.2
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 23/70 (32%)
Query: 47 QIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISAS 106
IF G+ ++ + + A DG + AS
Sbjct: 225 TIFTQDGQLISAL----------------------ESKVKHAQCFDVALMDDGSVVL-AS 261
Query: 107 ADHTVRVWNF 116
D+ + ++ +
Sbjct: 262 KDYRLYIYRY 271
Score = 25.8 bits (55), Expect = 3.0
Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 66 HWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASA-DHTVRVWNFARRENMHT 124
H + +G G +++ + +G+ I+ + + + ++ + +
Sbjct: 178 HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISA 236
Query: 125 FK---HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
+ Q + V + DG ++ D +++Y Y
Sbjct: 237 LESKVKHAQCFDVALMDDGSVVLASK-DYRLYIYRY 271
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 26.9 bits (58), Expect = 1.5
Identities = 7/55 (12%), Positives = 21/55 (38%)
Query: 14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWI 68
+ F D+ +++ S I ++G + G+ + + ++ + I
Sbjct: 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI 282
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 26.7 bits (57), Expect = 1.6
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 15 WNVVFSPDDKYVLSGSQSG---KINLYGVETGKLEQIFDTRG 53
+P+ V+ S G +NL + ++ T G
Sbjct: 217 ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 258
>d1h6da2 d.81.1.5 (A:213-374) Glucose-fructose oxidoreductase
{Zymomonas mobilis [TaxId: 542]}
Length = 162
Score = 26.2 bits (56), Expect = 2.0
Identities = 8/150 (5%), Positives = 26/150 (17%), Gaps = 8/150 (5%)
Query: 40 VETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDG 99
+ +L ++ + + + + +
Sbjct: 11 IRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEP 70
Query: 100 KFFISASADHTVRVWNFARRENMHTFKHAD-----QVWCVCVAPDGDKFVSVGEDKAVHM 154
+ + + + +F G+ + M
Sbjct: 71 IEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLM 130
Query: 155 ---YSYKPEEEVEVNGGGGEEEEEEQMVTP 181
Y G + Q + P
Sbjct: 131 DPATGYYQNLISVQTPGHANQSMMPQFIMP 160
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 281
Score = 25.5 bits (54), Expect = 4.3
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQI 48
D + + D + +L S+ G I ++ +T K+E+I
Sbjct: 234 DYYPRHLNTDGRRILF-SKGGSIYIFNPDTEKIEKI 268
>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518
{Chromobacterium violaceum [TaxId: 536]}
Length = 120
Score = 24.5 bits (53), Expect = 6.1
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 101 FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
I A+ D +V A + + + G+ + D VH+
Sbjct: 36 RMIVATGDSNRQVKALANSVQVKLKEAGVDIVGSEGHESGEWVLVDAGDVVVHVML 91
>d1v3ea_ b.68.1.1 (A:) Hemagglutinin-neuraminidase glycoprotein
{Human parainfluenza virus type 3 [TaxId: 11216]}
Length = 431
Score = 24.8 bits (54), Expect = 6.7
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 75 GIINIFDANTGHSSWVLSTAFTRDGKFFISASA 107
GII+I D + W +R G
Sbjct: 294 GIIDITDYSDIRIKWTWHNVLSRPGNNECPWGH 326
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 109
Score = 23.7 bits (51), Expect = 8.3
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 138 PDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGEEEEE 175
+G H+ P ++ G E E
Sbjct: 35 ELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAET 72
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664
{Lactobacillus plantarum [TaxId: 1590]}
Length = 215
Score = 24.2 bits (52), Expect = 8.4
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 108 DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNG 167
DH RV ARR + + A+ + A V +DK + + ++ +
Sbjct: 28 DHLQRVNRLARR--LAKDEGANLNLTLAAA----WLHDVIDDKLMANPAKAHQDLIVQLN 81
Query: 168 GGGEEEEEEQMV 179
+++ +
Sbjct: 82 AQNVTADDQTAI 93
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 24.7 bits (54), Expect = 8.6
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 27/121 (22%)
Query: 15 WNVVFSPDDKY-VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
+PD K+ ++G S + + V + + +F
Sbjct: 278 HGCNMAPDKKHLCVAGKLSPTVTVLDVT--RFDAVFYENADPR----------------- 318
Query: 74 DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
++ + G L TAF G + S D V WN ++V
Sbjct: 319 SAVVAEPELGLGP----LHTAFDGRGNAYTSLFLDSQVVKWNIEDAI---RAYAGEKVDP 371
Query: 134 V 134
+
Sbjct: 372 I 372
>d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 139
Score = 24.2 bits (52), Expect = 9.1
Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 10/85 (11%)
Query: 47 QIFDTRGKFTLSI-AYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISA 105
++ D+RG T+ + + G + ++ +++A R
Sbjct: 11 EVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDG-----DKKRYVGKGCLQ 65
Query: 106 SADHTVRVWNFARRENMHTFKHADQ 130
+ + V + Q
Sbjct: 66 AVKNVNEVI----GPALIGRDELKQ 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.410
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 716,619
Number of extensions: 32154
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 174
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)