BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10956
(582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 52/240 (21%)
Query: 155 AENSLTSLPDSLANLQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFNRIKTVHPDI- 212
+ LT++P ++ + LDL+ NKL+ LP ++LT L++LYL N+++T+ I
Sbjct: 24 SSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 213 QYLSNLSMLSMRDNKIRELP-PELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQH 271
+ L NL L + DNK++ LP +L NL L L N L+ LP
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP---------------- 125
Query: 272 NELVNIPDMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCAXXXXXXXXXXX 330
P + +L LT L L YN L+S+P+ K L E
Sbjct: 126 ------PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE------------------ 161
Query: 331 XXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ L N+ P G + T + ++ ++NQ+ ++P G F + L + +++N
Sbjct: 162 ------LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 29/203 (14%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
++D S +T +P ++ T ++L L NKL+SLPS+
Sbjct: 20 SVDCSSKKLTAIPSNIPADT--KKLDLQSNKLSSLPSK---------------------- 55
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDI-QYLSNLSMLS 222
+ L +LR+L L NKL LP ++K L +L+ L++ N+++ + + L NL+ L
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 223 MRDNKIRELPPELGE-LKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIPD- 279
+ N+++ LPP + + L L L L +N L+ LPK + T L L L +N+L +P+
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 280 MLGNLINLTRLRLSYNRLESVPE 302
L L L+L N+L+ VPE
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPE 198
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ L NK ++ PS + T + + N++ +P GIF KNL + + DN L +LP
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 397 LDL-GTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLD 455
+ + V L EL L NQ+ L P +L KL L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLP----------------------PRVFDSLTKLTYLS 139
Query: 456 LEENKLESLPNEI-GFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIPE- 512
L N+L+SLP + L L+ L L +NQL +P A LT L L + N L+ +PE
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199
Query: 513 EIGTLENLHTLYLNDN 528
+LE L L L +N
Sbjct: 200 AFDSLEKLKMLQLQEN 215
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 13/177 (7%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
LDL + ++ LP + +LT L LYL NKL +LP+ I + NL L + +N L +LP
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 164 ----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSN 217
D L NL +LR L N+L LP V+ LT L L L +N ++++ + L++
Sbjct: 102 IGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 218 LSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHN 272
L L + +N+++ +P +L L TL L +N L+ +P+ + L L LQ N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 454 LDLEENKLESLPNEIGFLKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSIPE 512
+D KL ++P+ I + ++L LQSN+L SLP +A LT L L + +N LQ++P
Sbjct: 21 VDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 513 EI-GTLENLHTLYLNDNTCLNNIPFEL-ALCSNLQIMSLDNCPLSQIPSEI 561
I L+NL TL++ DN L +P + NL + LD L +P +
Sbjct: 79 GIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 56/246 (22%)
Query: 243 TLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSY---NRLES 299
++D + L +P I T LDLQ N+L ++P LT+LRL Y N+L++
Sbjct: 20 SVDCSSKKLTAIPSNIPADTK--KLDLQSNKLSSLPSKA--FHRLTKLRLLYLNDNKLQT 75
Query: 300 VPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVY 359
+P + K + N+E + ++ NK A P G Q ++
Sbjct: 76 LPAGIFKELK----NLE-------------------TLWVTDNKLQALPIGVFDQLVNLA 112
Query: 360 SINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL-GTWVGLTELNLGTNQISKL 418
+ + NQ+ +P +F L+ +++ N L SLP + L EL L NQ+ ++
Sbjct: 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172
Query: 419 SEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGF--LKELQR 476
E + L +LK L L+ N+L+ +P E F L++L+
Sbjct: 173 PE----------------------GAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKM 209
Query: 477 LILQSN 482
L LQ N
Sbjct: 210 LQLQEN 215
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 442 PSSIGNLRKLKCLDLEENKLES-LPNEIGFLKELQRLILQSNQLVS-LPRAIGHLTNLSY 499
PSS+G+L KL+ L L N LE +P E+ ++K L+ LIL N L +P + + TNL++
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 500 LSVGENNLQS-IPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLD 550
+S+ N L IP+ IG LENL L L++N+ NIP EL C +L + L+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 100 EENILNLDLSKSSITHLPPSVEKLTH-----LEELYLYGNKL-ASLPSQIGYVTNLTCLG 153
++L LDLS ++ + P + L L+ELYL N +P + + L L
Sbjct: 367 SASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 154 LAENSLT-SLPDSLANLQQLRVLDLRHNKL-NELPMVVYKLTSLKILYLRFNRIKTVHPD 211
L+ N L+ ++P SL +L +LR L L N L E+P + + +L+ L L FN + P
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 212 -IQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLD 268
+ +NL+ +S+ +N++ E+P +G L+NL L L++N +P E+G+C L+ LD
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 269 LQHN 272
L N
Sbjct: 545 LNTN 548
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 118/256 (46%), Gaps = 31/256 (12%)
Query: 91 IEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLAS-LPSQIGYVTNL 149
I +E + K L LD + + +P + T+L + L N+L +P IG + NL
Sbjct: 458 IPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 150 TCLGLAENSLTS-LPDSLANLQQLRVLDLRHNKLN-ELPMVVYK---------LTSLKIL 198
L L+ NS + +P L + + L LDL N N +P ++K + + +
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 199 YLRFNRIKT-VHPDIQYLSNLSMLSMRDNKIR--------------ELPPELGELKNLVT 243
Y++ + +K H L + S + N++ P +++
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 244 LDLAHNHLEE-LPKEIGNCTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLES-V 300
LD+++N L +PKEIG+ L L+L HN++ +IPD +G+L L L LS N+L+ +
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 301 PETLSKCVHLNEFNVE 316
P+ +S L E ++
Sbjct: 697 PQAMSALTMLTEIDLS 712
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 145/382 (37%), Gaps = 81/382 (21%)
Query: 172 LRVLDLRHNKL-NELPMVVYKLTSLKILYLRFNRIK-TVHPDIQYLSNLSMLSMRDNKIR 229
L+ L L++N ++P + + L L+L FN + T+ + LS L L + N +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 230 -ELPPELGELKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLDLQHNELVN-IPDMLGNLIN 286
E+P EL +K L TL L N L E+P + NCT L + L +N L IP +G L N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 287 LTRLRLSYNRLES-VPETLSKCVHL-------NEFNVEGCAXXXXXXXXXXXXXXINNIT 338
L L+LS N +P L C L N FN N I
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN----GTIPAAMFKQSGKIAANFIA 571
Query: 339 LSRNKFT--------AYPSGGPTQFTSVYSINFEH------NQIDKIPYG-----IFSRA 379
R + + +G +F + S I YG F
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 380 KNLSKVNMKDNLLTS-LPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXX 438
++ ++M N+L+ +P ++G+ L LNLG N IS
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG--------------------- 670
Query: 439 XXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLS 498
P +G+LR L LDL NKL+ +P+A+ LT L+
Sbjct: 671 -SIPDEVGDLRGLNILDLSSNKLDG----------------------RIPQAMSALTMLT 707
Query: 499 YLSVGENNLQSIPEEIGTLENL 520
+ + NNL E+G E
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETF 729
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 115 HLPPSVEKLTHLEELYLYGNKLAS-LPSQIGYVTNLTCLGLAENSLT-SLPDSLANLQQL 172
H P+ + + L + N L+ +P +IG + L L L N ++ S+PD + +L+ L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 173 RVLDLRHNKLN-ELPMVVYKLTSLKILYLRFNRIKTVHPDI 212
+LDL NKL+ +P + LT L + L N + P++
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 487 LPRAIGHLTNLSYLSVGENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQ 545
+P+ IG + L L++G N++ SIP+E+G L L+ L L+ N IP ++ + L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 546 IMSLDNCPLS 555
+ L N LS
Sbjct: 708 EIDLSNNNLS 717
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 442 PSSIGNLRKLKCLDLEENKLES-LPNEIGFLKELQRLILQSNQLVS-LPRAIGHLTNLSY 499
PSS+G+L KL+ L L N LE +P E+ ++K L+ LIL N L +P + + TNL++
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 500 LSVGENNLQS-IPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLD 550
+S+ N L IP+ IG LENL L L++N+ NIP EL C +L + L+
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 100 EENILNLDLSKSSITHLPPSVEKLTH-----LEELYLYGNKL-ASLPSQIGYVTNLTCLG 153
++L LDLS ++ + P + L L+ELYL N +P + + L L
Sbjct: 364 SASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 154 LAENSLT-SLPDSLANLQQLRVLDLRHNKL-NELPMVVYKLTSLKILYLRFNRIKTVHPD 211
L+ N L+ ++P SL +L +LR L L N L E+P + + +L+ L L FN + P
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 212 -IQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLD 268
+ +NL+ +S+ +N++ E+P +G L+NL L L++N +P E+G+C L+ LD
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 269 LQHN 272
L N
Sbjct: 542 LNTN 545
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 118/256 (46%), Gaps = 31/256 (12%)
Query: 91 IEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKL-ASLPSQIGYVTNL 149
I +E + K L LD + + +P + T+L + L N+L +P IG + NL
Sbjct: 455 IPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 150 TCLGLAENSLTS-LPDSLANLQQLRVLDLRHNKLN-ELPMVVYK---------LTSLKIL 198
L L+ NS + +P L + + L LDL N N +P ++K + + +
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 199 YLRFNRIKT-VHPDIQYLSNLSMLSMRDNKIR--------------ELPPELGELKNLVT 243
Y++ + +K H L + S + N++ P +++
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 244 LDLAHNHLEE-LPKEIGNCTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLES-V 300
LD+++N L +PKEIG+ L L+L HN++ +IPD +G+L L L LS N+L+ +
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 301 PETLSKCVHLNEFNVE 316
P+ +S L E ++
Sbjct: 694 PQAMSALTMLTEIDLS 709
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 145/382 (37%), Gaps = 81/382 (21%)
Query: 172 LRVLDLRHNKL-NELPMVVYKLTSLKILYLRFNRIK-TVHPDIQYLSNLSMLSMRDNKIR 229
L+ L L++N ++P + + L L+L FN + T+ + LS L L + N +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 230 -ELPPELGELKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLDLQHNELVN-IPDMLGNLIN 286
E+P EL +K L TL L N L E+P + NCT L + L +N L IP +G L N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 287 LTRLRLSYNRLES-VPETLSKCVHL-------NEFNVEGCAXXXXXXXXXXXXXXINNIT 338
L L+LS N +P L C L N FN N I
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN----GTIPAAMFKQSGKIAANFIA 568
Query: 339 LSRNKFT--------AYPSGGPTQFTSVYSINFEH------NQIDKIPYG-----IFSRA 379
R + + +G +F + S I YG F
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 380 KNLSKVNMKDNLLTS-LPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXX 438
++ ++M N+L+ +P ++G+ L LNLG N IS
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG--------------------- 667
Query: 439 XXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLS 498
P +G+LR L LDL NKL+ +P+A+ LT L+
Sbjct: 668 -SIPDEVGDLRGLNILDLSSNKLDG----------------------RIPQAMSALTMLT 704
Query: 499 YLSVGENNLQSIPEEIGTLENL 520
+ + NNL E+G E
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETF 726
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 115 HLPPSVEKLTHLEELYLYGNKLAS-LPSQIGYVTNLTCLGLAENSLT-SLPDSLANLQQL 172
H P+ + + L + N L+ +P +IG + L L L N ++ S+PD + +L+ L
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 173 RVLDLRHNKLN-ELPMVVYKLTSLKILYLRFNRIKTVHPDI 212
+LDL NKL+ +P + LT L + L N + P++
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 487 LPRAIGHLTNLSYLSVGENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQ 545
+P+ IG + L L++G N++ SIP+E+G L L+ L L+ N IP ++ + L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 546 IMSLDNCPLS 555
+ L N LS
Sbjct: 705 EIDLSNNNLS 714
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 40/228 (17%)
Query: 167 ANLQQLRVLD-LRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD 225
ANL++ V D + N+LN + ++ + IK+V IQYL N+ L++
Sbjct: 24 ANLKKKSVTDAVTQNELNSIDQIIANNSD----------IKSVQ-GIQYLPNVRYLALGG 72
Query: 226 NKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNIPD-MLGN 283
NK+ ++ L EL NL L L N L+ LP + + T L L L N+L ++PD +
Sbjct: 73 NKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 284 LINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRN 342
L NLT L L++N+L+S+P+ K +L E + LS N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD------------------------LSYN 167
Query: 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ + P G + T + + NQ+ +P G+F R +L + + DN
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 79/134 (58%), Gaps = 13/134 (9%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
N+ L L+ + + LP V +KLT+L+EL L N+L SLP + +TNLT L LA N L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 160 TSLP----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPD--I 212
SLP D L NL + LDL +N+L LP V+ KLT LK L L N++K+V PD
Sbjct: 146 QSLPKGVFDKLTNLTE---LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVF 201
Query: 213 QYLSNLSMLSMRDN 226
L++L + + DN
Sbjct: 202 DRLTSLQYIWLHDN 215
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 115 HLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLPDSLAN-LQQL 172
H ++++LT+L L L GN+L SLP+ + +TNL L L EN L SLPD + + L L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 173 RVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRE 230
L+L HN+L LP V+ KLT+L L L +N+++++ + L+ L L + N+++
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 231 LP 232
+P
Sbjct: 196 VP 197
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Query: 99 KEENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAE 156
K N+ L L ++ + LP V +KLT+L L L N+L SLP + +TNLT L L+
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 157 NSLTSLPDSLAN-LQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQY 214
N L SLP+ + + L QL+ L L N+L +P V+ +LTSL+ ++L N P I+Y
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 226
Query: 215 LS 216
LS
Sbjct: 227 LS 228
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 30/180 (16%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178
++ L ++ L L GNKL + S + +TNLT L L N L SLP+
Sbjct: 58 GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNG------------- 103
Query: 179 HNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD--IQYLSNLSMLSMRDNKIRELPPEL- 235
V KLT+LK L L N+++++ PD L+NL+ L++ N+++ LP +
Sbjct: 104 ---------VFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153
Query: 236 GELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSY 294
+L NL LDL++N L+ LP+ + + T L L L N+L ++PD G LT L+ +
Sbjct: 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIW 211
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPRAI-GHLTNLSYL 500
S++ L L L L N+L+SLPN + L L+ L+L NQL SLP + LTNL+YL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 501 SVGENNLQSIPEEI-GTLENLHTLYLNDN 528
++ N LQS+P+ + L NL L L+ N
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ L+ N+ + P+G + T++ + NQ+ +P G+F + NL+ +N+ N L SLP
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 397 LDL-GTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLD 455
+ LTEL+L NQ+ L E + L +LK L
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGV----------------------FDKLTQLKDLR 187
Query: 456 LEENKLESLPNEI-GFLKELQRLILQSN 482
L +N+L+S+P+ + L LQ + L N
Sbjct: 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 28/143 (19%)
Query: 267 LDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCAXXXXXX 325
L L N+L +I L L NLT L L+ N+L+S+P K +L E
Sbjct: 68 LALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE------------- 113
Query: 326 XXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKV 385
+ L N+ + P G + T++ +N HNQ+ +P G+F + NL+++
Sbjct: 114 -----------LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 386 NMKDNLLTSLPLDLGTWVGLTEL 408
++ N L SLP G + LT+L
Sbjct: 163 DLSYNQLQSLP--EGVFDKLTQL 183
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 448 LRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGEN 505
L LK L L EN+L+SLP+ + L L L L NQL SLP+ + LTNL+ L + N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 506 NLQSIPEEI 514
LQS+PE +
Sbjct: 168 QLQSLPEGV 176
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 79/127 (62%), Gaps = 7/127 (5%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
LDL +S+ LP V ++LT L +LYL GNKL SLP+ + +T+LT L L+ N L SLP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 164 DSLAN-LQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPD--IQYLSNLS 219
+ + + L QL+ L L N+L LP V+ KLT LK L L N++K+V PD L++L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQ 151
Query: 220 MLSMRDN 226
+ + DN
Sbjct: 152 YIWLHDN 158
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 51/187 (27%)
Query: 345 TAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVG 404
T+ P+G P Q T ++ E N + +P G+F LTSL
Sbjct: 20 TSVPTGIPAQTTY---LDLETNSLKSLPNGVFDE-------------LTSL--------- 54
Query: 405 LTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESL 464
T+L LG N++ L + L L L+L N+L+SL
Sbjct: 55 -TQLYLGGNKLQSLPNGV----------------------FNKLTSLTYLNLSTNQLQSL 91
Query: 465 PNEI-GFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIPEEI-GTLENLH 521
PN + L +L+ L L +NQL SLP + LT L L + +N L+S+P+ + L +L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 522 TLYLNDN 528
++L+DN
Sbjct: 152 YIWLHDN 158
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 244 LDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNIPDMLGN-LINLTRLRLSYNRLESVP 301
LDL N L+ LP + + T L L L N+L ++P+ + N L +LT L LS N+L+S+P
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 302 E-TLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYS 360
K L E + L+ N+ + P G + T +
Sbjct: 93 NGVFDKLTQLKE------------------------LALNTNQLQSLPDGVFDKLTQLKD 128
Query: 361 INFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ NQ+ +P G+F R +L + + DN
Sbjct: 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ L N + P+G + TS+ + N++ +P G+F++ +L+ +N+ N L SLP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 397 LDLGTWVGLT---ELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKC 453
G + LT EL L TNQ+ L + + L +LK
Sbjct: 93 --NGVFDKLTQLKELALNTNQLQSLPDGV----------------------FDKLTQLKD 128
Query: 454 LDLEENKLESLPNEI-GFLKELQRLILQSN 482
L L +N+L+S+P+ + L LQ + L N
Sbjct: 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
+ + L NK + P+G + TS+ +N NQ+ +P G+F + L ++ + N L
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 394 SLP 396
SLP
Sbjct: 114 SLP 116
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 161/358 (44%), Gaps = 35/358 (9%)
Query: 196 KILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254
++ L+ +R+ D ++YL+NL+ ++ +N++ ++ P L L LV + + +N + ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 100
Query: 255 PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
+ N T L L L +N++ +I D L NL NL RL LS N + + LS L + N
Sbjct: 101 -TPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLN 157
Query: 315 VEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI-PY 373
+ + + +S NK + + T++ S+ +NQI I P
Sbjct: 158 F--SSNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPL 213
Query: 374 GIF-------------------SRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQ 414
GI + NL+ +++ +N +++L L LTEL LG NQ
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ 272
Query: 415 ISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKEL 474
IS +S P I NL+ L L L N + + + + L +L
Sbjct: 273 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-SPVSSLTKL 329
Query: 475 QRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532
QRL +N+ VS ++ +LTN+++LS G N + + + L + L LND N
Sbjct: 330 QRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTN 385
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAEN 157
K N+ +L + + I+ + P + LT+L+EL L GN+L + + + +TNLT L LA N
Sbjct: 192 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN 249
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLS 216
+++L L+ L +L L L N+++ + P+ LT+L L L N+++ + P I L
Sbjct: 250 QISNLA-PLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP-ISNLK 305
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVN 276
NL+ L++ N I ++ P + L L L +N + ++ + N T + L HN++ +
Sbjct: 306 NLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISD 363
Query: 277 IPDMLGNLINLTRLRLSYNRLESVP 301
+ L NL +T+L L+ + P
Sbjct: 364 LTP-LANLTRITQLGLNDQAWTNAP 387
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
NL+L+++ + + P + L +L L LY N ++ + S + +T L L N ++ +
Sbjct: 287 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-S 343
Query: 165 SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
SLANL + L HN++++L P+ LT +I L N + + Y +N+S+
Sbjct: 344 SLANLTNINWLSAGHNQISDLTPLA--NLT--RITQLGLNDQAWTNAPVNYKANVSI 396
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K ++T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRAELT 68
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N+L ELP + N L TL LQ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 278 P 278
P
Sbjct: 188 P 188
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N T P+G ++ ++ + N + IP G F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 55/210 (26%)
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLG 411
++ S +N + + +P + K+ + +++ +NLL + L L + LT+LNL
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLP------ 465
+++KL D G L L LDL N+L+SLP
Sbjct: 64 RAELTKLQVD------------------------GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 466 ------------------NEIGFLKELQRLILQSNQLVSLPRAIGHLT-NLSYLSVGENN 506
+ L ELQ L L+ N+L +LP + T L LS+ NN
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 507 LQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535
L +P + LENL TL L +N+ L IP
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENS-LYTIP 188
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 450 KLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQS 509
+L L+L+ +L L + G L L L L NQL SLP L L+ L V N L S
Sbjct: 56 RLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 510 IP-EEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVG 564
+P + L L LYL N P L L+ +SL N L+++P+ ++ G
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXX 441
L+++N+ LT L +D GT L L+L NQ+ L Q
Sbjct: 57 LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 442 P-SSIGNLRKLKCLDLEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTN 496
P ++ L +L+ L L+ N+L++LP G L +L++L L +N L LP + L N
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 497 LSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNN 533
L L + EN+L +IP+ L +L+ N L N
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K ++T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRAELT 68
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N+L ELP + N L TL LQ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 278 P 278
P
Sbjct: 188 P 188
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N T P+G ++ ++ + N + IP G F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 52/183 (28%)
Query: 380 KNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXX 438
K+ + +++ +NLL + L L + LT+LNL +++KL D
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----------------- 73
Query: 439 XXXPSSIGNLRKLKCLDLEENKLESLP-----------NEIGF-------------LKEL 474
G L L LDL N+L+SLP ++ F L EL
Sbjct: 74 -------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 475 QRLILQSNQLVSLPRAIGHLT-NLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDNTCLN 532
Q L L+ N+L +LP + T L LS+ NNL +P + LENL TL L +N+ L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LY 185
Query: 533 NIP 535
IP
Sbjct: 186 TIP 188
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 450 KLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQS 509
+L L+L+ +L L + G L L L L NQL SLP L L+ L V N L S
Sbjct: 56 RLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 510 IP-EEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVG 564
+P + L L LYL N P L L+ +SL N L+++P+ ++ G
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXX 441
L+++N+ LT L +D GT L L+L NQ+ L Q
Sbjct: 57 LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 442 P-SSIGNLRKLKCLDLEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTN 496
P ++ L +L+ L L+ N+L++LP G L +L++L L +N L LP + L N
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 497 LSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNN 533
L L + EN+L +IP+ L +L+ N L N
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K ++T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRAELT 68
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N+L ELP + N L TL LQ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 278 P 278
P
Sbjct: 188 P 188
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N T P+G ++ ++ + N + IP G F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 52/183 (28%)
Query: 380 KNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXX 438
K+ + +++ +NLL + L L + LT+LNL +++KL D
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----------------- 73
Query: 439 XXXPSSIGNLRKLKCLDLEENKLESLP-----------NEIGF-------------LKEL 474
G L L LDL N+L+SLP ++ F L EL
Sbjct: 74 -------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 475 QRLILQSNQLVSLPRAIGHLT-NLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDNTCLN 532
Q L L+ N+L +LP + T L LS+ NNL +P + LENL TL L +N+ L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LY 185
Query: 533 NIP 535
IP
Sbjct: 186 TIP 188
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 450 KLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQS 509
+L L+L+ +L L + G L L L L NQL SLP L L+ L V N L S
Sbjct: 56 RLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 510 IP-EEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVG 564
+P + L L LYL N P L L+ +SL N L+++P+ ++ G
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXX 441
L+++N+ LT L +D GT L L+L NQ+ L Q
Sbjct: 57 LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 442 P-SSIGNLRKLKCLDLEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTN 496
P ++ L +L+ L L+ N+L++LP G L +L++L L +N L LP + L N
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 497 LSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNN 533
L L + EN+L +IP+ L +L+ N L N
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K +T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRCELT 68
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTM-LVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N L ELP + N L TL LQ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 278 P 278
P
Sbjct: 188 P 188
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N+ T P+G ++ ++ + N + IP G F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 55/210 (26%)
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLG 411
++ S +N + Q+ +P + K+ + +++ +NLL + L L + LT+LNL
Sbjct: 7 SKVASHLEVNCDKRQLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLP------ 465
+++KL D G L L LDL N+L+SLP
Sbjct: 64 RCELTKLQVD------------------------GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 466 -----NEIGF-------------LKELQRLILQSNQLVSLPRAIGHLT-NLSYLSVGENN 506
++ F L ELQ L L+ N+L +LP + T L LS+ N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 507 LQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535
L +P + LENL TL L +N+ L IP
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENS-LYTIP 188
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ + + TA P P T ++ N + L+++N+ LT L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ 71
Query: 397 LDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXP-SSIGNLRKLKCLD 455
+D GT L L+L NQ+ L Q P ++ L +L+ L
Sbjct: 72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 456 LEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIP 511
L+ N+L++LP G L +L++L L +NQL LP + L NL L + EN+L +IP
Sbjct: 131 LKGNELKTLPP--GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 512 EEIGTLENLHTLYLNDNTCLNN 533
+ L +L+ N L N
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLCN 210
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 469 GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIP-EEIGTLENLHTLYLND 527
G L L L L NQL SLP L L+ L V N L S+P + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 528 NTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVG 564
N P L L+ +SL N L+++P+ ++ G
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K +T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRCELT 68
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTM-LVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N L ELP + N L TL LQ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 278 P 278
P
Sbjct: 188 P 188
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N+ T P+G ++ ++ + N + IP G F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 55/210 (26%)
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLG 411
++ S +N + Q+ +P + K+ + +++ +NLL + L L + LT+LNL
Sbjct: 7 SKVASHLEVNCDKRQLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLP------ 465
+++KL D G L L LDL N+L+SLP
Sbjct: 64 RCELTKLQVD------------------------GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 466 -----NEIGF-------------LKELQRLILQSNQLVSLPRAIGHLT-NLSYLSVGENN 506
++ F L ELQ L L+ N+L +LP + T L LS+ N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 507 LQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535
L +P + LENL TL L +N+ L IP
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENS-LYTIP 188
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ + + TA P P T ++ N + L+++N+ LT L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ 71
Query: 397 LDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXP-SSIGNLRKLKCLD 455
+D GT L L+L NQ+ L Q P ++ L +L+ L
Sbjct: 72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 456 LEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIP 511
L+ N+L++LP G L +L++L L +NQL LP + L NL L + EN+L +IP
Sbjct: 131 LKGNELKTLPP--GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 512 EEIGTLENLHTLYLNDNTCLNN 533
+ L +L+ N L N
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLCN 210
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 469 GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIP-EEIGTLENLHTLYLND 527
G L L L L NQL SLP L L+ L V N L S+P + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 528 NTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVG 564
N P L L+ +SL N L+++P+ ++ G
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 160/358 (44%), Gaps = 36/358 (10%)
Query: 196 KILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254
++ L+ +R+ D ++YL+NL+ ++ +N++ ++ P L L LV + + +N + ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 100
Query: 255 PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
+ N T L L L +N++ +I D L NL NL RL LS N + + LS L + N
Sbjct: 101 -TPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLN 157
Query: 315 VEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI-PY 373
+ + +S NK + + T++ S+ +NQI I P
Sbjct: 158 ---FGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPL 212
Query: 374 GIF-------------------SRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQ 414
GI + NL+ +++ +N +++L L LTEL LG NQ
Sbjct: 213 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ 271
Query: 415 ISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKEL 474
IS +S P I NL+ L L L N + + + + L +L
Sbjct: 272 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-SPVSSLTKL 328
Query: 475 QRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532
QRL +N+ VS ++ +LTN+++LS G N + + + L + L LND N
Sbjct: 329 QRLFFSNNK-VSDVSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTN 384
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAEN 157
K N+ +L + + I+ + P + LT+L+EL L GN+L + + + +TNLT L LA N
Sbjct: 191 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN 248
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLS 216
+++L L+ L +L L L N+++ + P+ LT+L L L N+++ + P I L
Sbjct: 249 QISNLA-PLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP-ISNLK 304
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVN 276
NL+ L++ N I ++ P + L L L ++N + ++ + N T + L HN++ +
Sbjct: 305 NLTYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSDV-SSLANLTNINWLSAGHNQISD 362
Query: 277 IPDMLGNLINLTRLRLSYNRLESVP 301
+ L NL +T+L L+ + P
Sbjct: 363 LTP-LANLTRITQLGLNDQAWTNAP 386
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
NL+L+++ + + P + L +L L LY N ++ + S + +T L L + N ++ +
Sbjct: 286 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDV-S 342
Query: 165 SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
SLANL + L HN++++L P+ LT +I L N + + Y +N+S+
Sbjct: 343 SLANLTNINWLSAGHNQISDLTPLA--NLT--RITQLGLNDQAWTNAPVNYKANVSI 395
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K +T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRCELT 68
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N L ELP + N L TL LQ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 278 P 278
P
Sbjct: 188 P 188
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N+ T P+G ++ ++ + N + IP G F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 55/210 (26%)
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLG 411
++ S +N + Q+ +P + K+ + +++ +NLL + L L + LT+LNL
Sbjct: 7 SKVASHLEVNCDKRQLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLP------ 465
+++KL D G L L LDL N+L+SLP
Sbjct: 64 RCELTKLQVD------------------------GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 466 -----NEIGF-------------LKELQRLILQSNQLVSLPRAIGHLT-NLSYLSVGENN 506
++ F L ELQ L L+ N+L +LP + T L LS+ N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 507 LQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535
L +P + LENL TL L +N+ L IP
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENS-LYTIP 188
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ + + TA P P T ++ N + L+++N+ LT L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ 71
Query: 397 LDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXP-SSIGNLRKLKCLD 455
+D GT L L+L NQ+ L Q P ++ L +L+ L
Sbjct: 72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 456 LEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIP 511
L+ N+L++LP G L +L++L L +NQL LP + L NL L + EN+L +IP
Sbjct: 131 LKGNELKTLPP--GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 512 EEIGTLENLHTLYLNDNTCLNN 533
+ L +L+ N L N
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLCN 210
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 160/358 (44%), Gaps = 36/358 (10%)
Query: 196 KILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254
++ L+ +R+ D ++YL+NL+ ++ +N++ ++ P L L LV + + +N + ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 100
Query: 255 PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
+ N T L L L +N++ +I D L NL NL RL LS N + + LS L + N
Sbjct: 101 -TPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLN 157
Query: 315 VEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI-PY 373
+ + +S NK + + T++ S+ +NQI I P
Sbjct: 158 ---FGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPL 212
Query: 374 GIF-------------------SRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQ 414
GI + NL+ +++ +N +++L L LTEL LG NQ
Sbjct: 213 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ 271
Query: 415 ISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKEL 474
IS +S P I NL+ L L L N + + + + L +L
Sbjct: 272 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-SPVSSLTKL 328
Query: 475 QRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532
QRL +N+ VS ++ +LTN+++LS G N + + + L + L LND N
Sbjct: 329 QRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTN 384
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAEN 157
K N+ +L + + I+ + P + LT+L+EL L GN+L + + + +TNLT L LA N
Sbjct: 191 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN 248
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLS 216
+++L L+ L +L L L N+++ + P+ LT+L L L N+++ + P I L
Sbjct: 249 QISNLA-PLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP-ISNLK 304
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVN 276
NL+ L++ N I ++ P + L L L +N + ++ + N T + L HN++ +
Sbjct: 305 NLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISD 362
Query: 277 IPDMLGNLINLTRLRLSYNRLESVP 301
+ L NL +T+L L+ + P
Sbjct: 363 LTP-LANLTRITQLGLNDQAWTNAP 386
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
NL+L+++ + + P + L +L L LY N ++ + S + +T L L N ++ +
Sbjct: 286 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-S 342
Query: 165 SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
SLANL + L HN++++L P+ LT +I L N + + Y +N+S+
Sbjct: 343 SLANLTNINWLSAGHNQISDLTPLA--NLT--RITQLGLNDQAWTNAPVNYKANVSI 395
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K +T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRCELT 68
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N L ELP + N L TL LQ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 278 P 278
P
Sbjct: 188 P 188
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N+ T P+G ++ ++ + N + IP G F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 55/210 (26%)
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLG 411
++ S +N + Q+ +P + K+ + +++ +NLL + L L + LT+LNL
Sbjct: 7 SKVASHLEVNCDKRQLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLP------ 465
+++KL D G L L LDL N+L+SLP
Sbjct: 64 RCELTKLQVD------------------------GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 466 -----NEIGF-------------LKELQRLILQSNQLVSLPRAIGHLT-NLSYLSVGENN 506
++ F L ELQ L L+ N+L +LP + T L LS+ N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 507 LQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535
L +P + LENL TL L +N+ L IP
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENS-LYTIP 188
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ + + TA P P T ++ N + L+++N+ LT L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ 71
Query: 397 LDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXP-SSIGNLRKLKCLD 455
+D GT L L+L NQ+ L Q P ++ L +L+ L
Sbjct: 72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 456 LEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIP 511
L+ N+L++LP G L +L++L L +NQL LP + L NL L + EN+L +IP
Sbjct: 131 LKGNELKTLPP--GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 512 EEIGTLENLHTLYLNDNTCLNN 533
+ L +L+ N L N
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLCN 210
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K ++T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 14 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRCELT 69
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 70 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 128
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N+L ELP + N L TL LQ N L I
Sbjct: 129 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 278 P 278
P
Sbjct: 189 P 189
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N T P+G ++ ++ + N + IP G F
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 194
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 55/210 (26%)
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLG 411
++ S +N + + +P + K+ + +++ +NLL + L L + LT+LNL
Sbjct: 8 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 64
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLP------ 465
+++KL D G L L LDL N+L+SLP
Sbjct: 65 RCELTKLQVD------------------------GTLPVLGTLDLSHNQLQSLPLLGQTL 100
Query: 466 -----NEIGF-------------LKELQRLILQSNQLVSLPRAIGHLT-NLSYLSVGENN 506
++ F L ELQ L L+ N+L +LP + T L LS+ NN
Sbjct: 101 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 160
Query: 507 LQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535
L +P + LENL TL L +N+ L IP
Sbjct: 161 LTELPAGLLNGLENLDTLLLQENS-LYTIP 189
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 469 GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIP-EEIGTLENLHTLYLND 527
G L L L L NQL SLP L L+ L V N L S+P + L L LYL
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 528 NTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVG 564
N P L L+ +SL N L+++P+ ++ G
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 171
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXX 441
L+++N+ LT L +D GT L L+L NQ+ L Q
Sbjct: 58 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 442 P-SSIGNLRKLKCLDLEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTN 496
P ++ L +L+ L L+ N+L++LP G L +L++L L +N L LP + L N
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 174
Query: 497 LSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNN 533
L L + EN+L +IP+ L +L+ N L N
Sbjct: 175 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 211
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 139/355 (39%), Gaps = 85/355 (23%)
Query: 195 LKILYLRFNRIKT--VHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLE 252
++I+Y+ +N +KT V +Q L L N++ P G L +L+LA+N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366
Query: 253 ELPKEIGNCTMLV-TLDLQHNELVNIPDMLG--NLINLTRLRLSYNRLESVPETLSKCVH 309
E+P T V L HN+L IP++ ++ + + SYN + SV
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVD-------- 418
Query: 310 LNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID 369
+N P+ P + +V SIN +NQI
Sbjct: 419 ------------------------------GKNFDPLDPT--PFKGINVSSINLSNNQIS 446
Query: 370 KIPYGIFSRAKNLSKVNMKDNLLTSLPLD---------LGTWVGLTELNLGTNQISKLSE 420
K P +FS LS +N+ N LT +P + T++ LT ++L N+++KLS+
Sbjct: 447 KFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYL-LTSIDLRFNKLTKLSD 505
Query: 421 DIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNE-------IGFLKE 473
D + L L +DL N P + GF
Sbjct: 506 DFRATT---------------------LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544
Query: 474 LQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDN 528
QR + L P I +L+ L +G N+++ + E+I N+ L + DN
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDN 597
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Query: 116 LPPSVEKLTHLEELYLYGNKLASLPSQIGYVTN-LTCLGLAENSLTSLP--------DSL 166
L P+ K ++ + L N+++ P ++ + L+ + L N LT +P ++
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENF 484
Query: 167 ANLQQLRVLDLRHNKLNEL-----PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSML 221
N L +DLR NKL +L + L + + Y F++ T + L +
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544
Query: 222 SMRDNK----IRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI 277
+ RD + +RE P + +L L + N + ++ ++I + LD++ N ++I
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISI 602
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K +T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 13 LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRCELT 68
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N+L ELP + N L TL LQ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 278 P 278
P
Sbjct: 188 P 188
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N T P+G ++ ++ + N + IP G F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 55/210 (26%)
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLG 411
++ S +N + + +P + K+ + +++ +NLL + L L + LT+LNL
Sbjct: 7 SKVASHLEVNCDKRDLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLP------ 465
+++KL D G L L LDL N+L+SLP
Sbjct: 64 RCELTKLQVD------------------------GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 466 -----NEIGF-------------LKELQRLILQSNQLVSLPRAIGHLT-NLSYLSVGENN 506
++ F L ELQ L L+ N+L +LP + T L LS+ NN
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 507 LQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535
L +P + LENL TL L +N+ L IP
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENS-LYTIP 188
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 469 GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIP-EEIGTLENLHTLYLND 527
G L L L L NQL SLP L L+ L V N L S+P + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 528 NTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVG 564
N P L L+ +SL N L+++P+ ++ G
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXX 441
L+++N+ LT L +D GT L L+L NQ+ L Q
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 442 P-SSIGNLRKLKCLDLEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTN 496
P ++ L +L+ L L+ N+L++LP G L +L++L L +N L LP + L N
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 497 LSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNN 533
L L + EN+L +IP+ L +L+ N L N
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
Query: 104 LNLDLSKSSITHLPPSVEKLT---HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
L ++ K +T LPP + K T HL E LY LA+L + Y T LT L L LT
Sbjct: 13 LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATL---MPY-TRLTQLNLDRCELT 68
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLS 219
L L L LDL HN+L LP++ L +L +L + FNR+ ++ ++ L L
Sbjct: 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTM-LVTLDLQHNELVNI 277
L ++ N+++ LPP L L L LA+N L ELP + N L TL LQ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 278 P 278
P
Sbjct: 188 P 188
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 259 GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEG 317
G +L TLDL HN+L ++P + L LT L +S+NRL S+P L L E ++G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 318 CAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ ++L+ N T P+G ++ ++ + N + IP G F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 90/210 (42%), Gaps = 55/210 (26%)
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLG 411
++ S +N + + +P + K+ + +++ +NLL + L L + LT+LNL
Sbjct: 7 SKVASHLEVNCDKRDLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLP------ 465
+++KL D G L L LDL N+L+SLP
Sbjct: 64 RCELTKLQVD------------------------GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 466 -----NEIGF-------------LKELQRLILQSNQLVSLPRAIGHLT-NLSYLSVGENN 506
++ F L ELQ L L+ N+L +LP + T L LS+ N+
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANND 159
Query: 507 LQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535
L +P + LENL TL L +N+ L IP
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENS-LYTIP 188
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 469 GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIP-EEIGTLENLHTLYLND 527
G L L L L NQL SLP L L+ L V N L S+P + L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 528 NTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVG 564
N P L L+ +SL N L+++P+ ++ G
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNG 170
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXX 441
L+++N+ LT L +D GT L L+L NQ+ L Q
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 442 P-SSIGNLRKLKCLDLEENKLESLPNEIGFLK---ELQRLILQSNQLVSLPRAI-GHLTN 496
P ++ L +L+ L L+ N+L++LP G L +L++L L +N L LP + L N
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNDLTELPAGLLNGLEN 173
Query: 497 LSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNN 533
L L + EN+L +IP+ L +L+ N L N
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 161/358 (44%), Gaps = 35/358 (9%)
Query: 196 KILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254
++ L+ +R+ D ++YL+NL+ ++ +N++ ++ P L L LV + + +N + ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 100
Query: 255 PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
+ N T L L L +N++ +I D L NL NL RL LS N + + LS L + +
Sbjct: 101 -TPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLS 157
Query: 315 VEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI-PY 373
+ + + +S NK + + T++ S+ +NQI I P
Sbjct: 158 F--SSNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPL 213
Query: 374 GIF-------------------SRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQ 414
GI + NL+ +++ +N +++L L LTEL LG NQ
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ 272
Query: 415 ISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKEL 474
IS +S P I NL+ L L L N + + + + L +L
Sbjct: 273 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-SPVSSLTKL 329
Query: 475 QRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532
QRL +N+ VS ++ +LTN+++LS G N + + + L + L LND N
Sbjct: 330 QRLFFSNNK-VSDVSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTN 385
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAEN 157
K N+ +L + + I+ + P + LT+L+EL L GN+L + + + +TNLT L LA N
Sbjct: 192 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN 249
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLS 216
+++L L+ L +L L L N+++ + P+ LT+L L L N+++ + P I L
Sbjct: 250 QISNLA-PLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP-ISNLK 305
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVN 276
NL+ L++ N I ++ P + L L L ++N + ++ + N T + L HN++ +
Sbjct: 306 NLTYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSDV-SSLANLTNINWLSAGHNQISD 363
Query: 277 IPDMLGNLINLTRLRLSYNRLESVP 301
+ L NL +T+L L+ + P
Sbjct: 364 LTP-LANLTRITQLGLNDQAWTNAP 387
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
NL+L+++ + + P + L +L L LY N ++ + S + +T L L + N ++ +
Sbjct: 287 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDV-S 343
Query: 165 SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
SLANL + L HN++++L P+ LT +I L N + + Y +N+S+
Sbjct: 344 SLANLTNINWLSAGHNQISDLTPLA--NLT--RITQLGLNDQAWTNAPVNYKANVSI 396
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 161/358 (44%), Gaps = 35/358 (9%)
Query: 196 KILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254
++ L+ +R+ D ++YL+NL+ ++ +N++ ++ P L L LV + + +N + ++
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 100
Query: 255 PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
+ N T L L L +N++ +I D L NL NL RL LS N + + LS L + +
Sbjct: 101 -TPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLS 157
Query: 315 VEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI-PY 373
+ + + +S NK + + T++ S+ +NQI I P
Sbjct: 158 F--SSNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPL 213
Query: 374 GIF-------------------SRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQ 414
GI + NL+ +++ +N +++L L LTEL LG NQ
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ 272
Query: 415 ISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKEL 474
IS +S P I NL+ L L L N + + + + L +L
Sbjct: 273 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-SPVSSLTKL 329
Query: 475 QRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532
QRL +N+ VS ++ +LTN+++LS G N + + + L + L LND N
Sbjct: 330 QRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTN 385
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAEN 157
K N+ +L + + I+ + P + LT+L+EL L GN+L + + + +TNLT L LA N
Sbjct: 192 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN 249
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLS 216
+++L L+ L +L L L N+++ + P+ LT+L L L N+++ + P I L
Sbjct: 250 QISNLA-PLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP-ISNLK 305
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVN 276
NL+ L++ N I ++ P + L L L +N + ++ + N T + L HN++ +
Sbjct: 306 NLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISD 363
Query: 277 IPDMLGNLINLTRLRLSYNRLESVP 301
+ L NL +T+L L+ + P
Sbjct: 364 LTP-LANLTRITQLGLNDQAWTNAP 387
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
NL+L+++ + + P + L +L L LY N ++ + S + +T L L N ++ +
Sbjct: 287 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-S 343
Query: 165 SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
SLANL + L HN++++L P+ LT +I L N + + Y +N+S+
Sbjct: 344 SLANLTNINWLSAGHNQISDLTPLA--NLT--RITQLGLNDQAWTNAPVNYKANVSI 396
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 159/358 (44%), Gaps = 36/358 (10%)
Query: 196 KILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254
++ L+ +R+ D ++YL+NL+ ++ +N++ ++ P L L LV + + +N + ++
Sbjct: 46 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 104
Query: 255 PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
+ N T L L L +N++ +I D L NL NL RL LS N + + LS L +
Sbjct: 105 -TPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQL- 160
Query: 315 VEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI-PY 373
+ + +S NK + + T++ S+ +NQI I P
Sbjct: 161 --SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPL 216
Query: 374 GIF-------------------SRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQ 414
GI + NL+ +++ +N +++L L LTEL LG NQ
Sbjct: 217 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ 275
Query: 415 ISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKEL 474
IS +S P I NL+ L L L N + + + + L +L
Sbjct: 276 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-SPVSSLTKL 332
Query: 475 QRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532
QRL +N+ VS ++ +LTN+++LS G N + + + L + L LND N
Sbjct: 333 QRLFFANNK-VSDVSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTN 388
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAEN 157
K N+ +L + + I+ + P + LT+L+EL L GN+L + + + +TNLT L LA N
Sbjct: 195 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN 252
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLS 216
+++L L+ L +L L L N+++ + P+ LT+L L L N+++ + P I L
Sbjct: 253 QISNLA-PLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP-ISNLK 308
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVN 276
NL+ L++ N I ++ P + L L L A+N + ++ + N T + L HN++ +
Sbjct: 309 NLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISD 366
Query: 277 IPDMLGNLINLTRLRLSYNRLESVP 301
+ L NL +T+L L+ + P
Sbjct: 367 LTP-LANLTRITQLGLNDQAWTNAP 390
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
NL+L+++ + + P + L +L L LY N ++ + S + +T L L A N ++ +
Sbjct: 290 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDV-S 346
Query: 165 SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
SLANL + L HN++++L P+ LT +I L N + + Y +N+S+
Sbjct: 347 SLANLTNINWLSAGHNQISDLTPLA--NLT--RITQLGLNDQAWTNAPVNYKANVSI 399
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 159/358 (44%), Gaps = 36/358 (10%)
Query: 196 KILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254
++ L+ +R+ D ++YL+NL+ ++ +N++ ++ P L L LV + + +N + ++
Sbjct: 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 105
Query: 255 PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
+ N T L L L +N++ +I D L NL NL RL LS N + + LS L +
Sbjct: 106 -TPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQL- 161
Query: 315 VEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI-PY 373
+ + +S NK + + T++ S+ +NQI I P
Sbjct: 162 --SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPL 217
Query: 374 GIF-------------------SRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQ 414
GI + NL+ +++ +N +++L L LTEL LG NQ
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ 276
Query: 415 ISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKEL 474
IS +S P I NL+ L L L N + + + + L +L
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-SPVSSLTKL 333
Query: 475 QRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532
QRL +N+ VS ++ +LTN+++LS G N + + + L + L LND N
Sbjct: 334 QRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTN 389
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAEN 157
K N+ +L + + I+ + P + LT+L+EL L GN+L + + + +TNLT L LA N
Sbjct: 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN 253
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLS 216
+++L L+ L +L L L N+++ + P+ LT+L L L N+++ + P I L
Sbjct: 254 QISNLA-PLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP-ISNLK 309
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVN 276
NL+ L++ N I ++ P + L L L +N + ++ + N T + L HN++ +
Sbjct: 310 NLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISD 367
Query: 277 IPDMLGNLINLTRLRLSYNRLESVP 301
+ L NL +T+L L+ + P
Sbjct: 368 LTP-LANLTRITQLGLNDQAWTNAP 391
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
NL+L+++ + + P + L +L L LY N ++ + S + +T L L N ++ +
Sbjct: 291 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-S 347
Query: 165 SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
SLANL + L HN++++L P+ LT +I L N + + Y +N+S+
Sbjct: 348 SLANLTNINWLSAGHNQISDLTPLA--NLT--RITQLGLNDQAWTNAPVNYKANVSI 400
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 40/228 (17%)
Query: 167 ANLQQLRVLD-LRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD 225
ANL++ V D + N+LN + ++ + IK+V IQYL N+ L++
Sbjct: 24 ANLKKKSVTDAVTQNELNSIDQIIANNSD----------IKSVQ-GIQYLPNVRYLALGG 72
Query: 226 NKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNIPD-MLGN 283
NK+ ++ L EL NL L L N L+ LP + + T L L L N+L ++PD +
Sbjct: 73 NKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 284 LINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRN 342
L NLT L L +N+L+S+P+ K +L + L N
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD------------------------LDNN 167
Query: 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ + P G + T + ++ NQ+ +P G+F R +L+ + + +N
Sbjct: 168 QLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
Query: 99 KEENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAE 156
K N+ L L ++ + LP V +KLT+L LYLY N+L SLP + +TNLT L L
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 157 NSLTSLPDSLAN-LQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQY 214
N L SLP+ + + L QL+ L L N+L +P V+ +LTSL ++L N DI Y
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILY 226
Query: 215 LS 216
LS
Sbjct: 227 LS 228
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 115 HLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLPDSLAN-LQQL 172
H ++++LT+L L L GN+L SLP+ + +TNL L L EN L SLPD + + L L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 173 RVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRE 230
L L HN+L LP V+ KLT+L L L N+++++ + L+ L LS+ DN+++
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 231 LP 232
+P
Sbjct: 196 VP 197
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 27/178 (15%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLAN-LQQLRVLDL 177
++ L ++ L L GNKL + S + +TNLT L L N L SLP+ + + L L+ L L
Sbjct: 58 GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 178 RHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELG 236
N+L LP V+ KLT+L LYL N+++++ +
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGV----------------------FD 154
Query: 237 ELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNIPD-MLGNLINLTRLRL 292
+L NL LDL +N L+ LP+ + + T L L L N+L ++PD + L +LT + L
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
N+ L L+ + + LP V +KLT+L+EL L N+L SLP + +TNLT L L N L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 160 TSLPDSLAN-LQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPD 211
SLP + + L L LDL +N+L LP V+ KLT LK L L N++K+V PD
Sbjct: 146 QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV-PD 198
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPRAI-GHLTNLSYL 500
S++ L L L L N+L+SLPN + L L+ L+L NQL SLP + LTNL+YL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 501 SVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIP-FELALCSNLQIMSLDNCPLSQIP 558
+ N LQS+P+ + L NL L L DN L ++P + L+ +SL++ L +P
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 559 SEI 561
+
Sbjct: 198 DGV 200
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 31/160 (19%)
Query: 267 LDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCAXXXXXX 325
L L N+L +I L L NLT L L+ N+L+S+P K +L E
Sbjct: 68 LALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE------------- 113
Query: 326 XXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKV 385
+ L N+ + P G + T++ + HNQ+ +P G+F + NL+++
Sbjct: 114 -----------LVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRL 162
Query: 386 NMKDNLLTSLPLDLGTWVGLT---ELNLGTNQISKLSEDI 422
++ +N L SLP G + LT +L+L NQ+ + + +
Sbjct: 163 DLDNNQLQSLP--EGVFDKLTQLKQLSLNDNQLKSVPDGV 200
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 468 IGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLN 526
I +L ++ L L N+L + A+ LTNL+YL + N LQS+P + L NL L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 527 DN 528
+N
Sbjct: 118 EN 119
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 17/216 (7%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
L+L + P +L+HL+ + L LP L L LA N L +LP S
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPAS 145
Query: 166 LANLQQLRVLDLRH-NKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMR 224
+A+L +LR L +R +L ELP + + + Q L NL L +
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASG--------------EHQGLVNLQSLRLE 191
Query: 225 DNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQH-NELVNIPDMLGN 283
IR LP + L+NL +L + ++ L L I + L LDL+ L N P + G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 284 LINLTRLRLS-YNRLESVPETLSKCVHLNEFNVEGC 318
L RL L + L ++P + + L + ++ GC
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 451 LKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSV-GENNLQS 509
L+ L LE + SLP I L+ L+ L ++++ L +L AI HL L L + G L++
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 510 IPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCP-LSQIPSEIV 562
P G L L L D + L +P ++ + L+ + L C LS++PS I
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLS 501
P L L+ ++ L LP+ L+ L L N L +LP +I L L LS
Sbjct: 97 PDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELS 156
Query: 502 VGE-NNLQSIPEEIGT---------LENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDN 551
+ L +PE + + L NL +L L + T + ++P +A NL+ + + N
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRN 215
Query: 552 CPLSQIPSEI 561
PLS + I
Sbjct: 216 SPLSALGPAI 225
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYG-NKLASLPSQIGYVTNLTCLGLAENS- 158
+N+ +L + S ++ L P++ L LEEL L G L + P G L L L + S
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 159 LTSLPDSLANLQQLRVLDLRHN-KLNELPMVVYKLTS 194
L +LP + L QL LDLR L+ LP ++ +L +
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLA--SLPSQIGY-VTNLTCLGLAENSLTS 161
L+L + + LP V +KLT L +L L N L+ SQ + T+L L L+ N + +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 162 LPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQY------L 215
+ + L+QL LD +H+ L ++ L+ ++YL I H + + L
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL---DISHTHTRVAFNGIFNGL 149
Query: 216 SNLSMLSMRDNKIRE--LPPELGELKNLVTLDLAHNHLEEL-PKEIGNCTMLVTLDLQHN 272
S+L +L M N +E LP EL+NL LDL+ LE+L P + + L L++ HN
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 273 ELVNI 277
++
Sbjct: 210 NFFSL 214
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 11/177 (6%)
Query: 136 LASLPSQIGYVTNLTCLGLAENSLTSLPDSLAN-LQQLRVLDLRHNKLNELPMVV---YK 191
L S+P+ G ++ T L L N L SLP + + L QL L L N L+ +
Sbjct: 19 LTSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76
Query: 192 LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELP--PELGELKNLVTLDLAHN 249
TSLK L L FN + T+ + L L L + + ++++ L+NL+ LD++H
Sbjct: 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 250 HLEELPKEIGN-CTMLVTLDLQHNELVN--IPDMLGNLINLTRLRLSYNRLESVPET 303
H I N + L L + N +PD+ L NLT L LS +LE + T
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 123 LTHLEELYLYGNKLAS--LPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRH 179
L+ LE L + GN LP + NLT L L++ L L P + +L L+VL++ H
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 180 NKLNELPMVVYK-LTSLKILYLRFNRIKTVHP-DIQYL-SNLSMLSMRDNKI 228
N L YK L SL++L N I T ++Q+ S+L+ L++ N
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 14/213 (6%)
Query: 345 TAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL----DLG 400
T+ P+G P+ S + E N++ +P+G+F + L+K+++ N L+ D G
Sbjct: 20 TSVPTGIPS---SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76
Query: 401 TWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXP--SSIGNLRKLKCLDLEE 458
T L L+L N + +S + S +LR L LD+
Sbjct: 77 T-TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 459 NKLESLPNEI-GFLKELQRLILQSNQLVS--LPRAIGHLTNLSYLSVGENNLQSI-PEEI 514
N I L L+ L + N LP L NL++L + + L+ + P
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 515 GTLENLHTLYLNDNTCLNNIPFELALCSNLQIM 547
+L +L L ++ N + F ++LQ++
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 146 VTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRI 205
T+L L L+ N + ++ + L+QL LD +H+ L ++ L+ ++YL I
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL---DI 428
Query: 206 KTVHPDIQY------LSNLSMLSMRDNKIRE--LPPELGELKNLVTLDLAHNHLEEL-PK 256
H + + LS+L +L M N +E LP EL+NL LDL+ LE+L P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 257 EIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLE-SVP--ETLSKCVHLNE 312
+ + L L++ N+L ++PD + L +L ++ L N + S P + LS+ ++ N
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 548
Query: 313 FNVEGCA 319
+G A
Sbjct: 549 QKEQGSA 555
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 87/235 (37%), Gaps = 61/235 (25%)
Query: 167 ANLQQLRVLDLRHNKLNELPMVV---YKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSM 223
+L L LDL N L+ + TSLK L L FN + T+ + L L L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 224 RDNKIRELP--PELGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVN--IP 278
+ + ++++ L+NL+ LD++H H I N + L L + N +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 279 DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNIT 338
D+ L NLT L LS +LE +
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQL-------------------------------------- 485
Query: 339 LSRNKFTAYPSGGPTQFTSVYSI---NFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
PT F S+ S+ N NQ+ +P GIF R +L K+ + N
Sbjct: 486 ------------SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP 163
LDLS+ I + + + L+HL L L GN + SL +++L L E +L SL
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 164 D-SLANLQQLRVLDLRHNKLN--ELPMVVYKLTSLKILYLRFNRIKTVH 209
+ + +L+ L+ L++ HN + +LP LT+L+ L L N+I++++
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSN--QLVSLPRAIGHLTNLSYL 500
S + +L+KL ++ LE+ P IG LK L+ L + N Q LP +LTNL +L
Sbjct: 97 SGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 501 SVGENNLQSI 510
+ N +QSI
Sbjct: 155 DLSSNKIQSI 164
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVH-PDIQYLSNLSMLS 222
S + +L+VLDL ++ + Y+ L+ L L L N I+++ LS+L L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 223 MRDNKIRELPP-ELGELKNLVTLDLAHNHLE--ELPKEIGNCTMLVTLDLQHNELVNI 277
+ + L +G LK L L++AHN ++ +LP+ N T L LDL N++ +I
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 442 PSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPRAI 491
P LR L LDL + +LE L P L LQ L + SNQL S+P I
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 119 SVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAENSLTS--LPDSLANLQQLRVL 175
+ L+ L++L LASL + IG++ L L +A N + S LP+ +NL L L
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 176 DLRHNKLNELPMVVYKLTSLKILY 199
DL NK+ + T L++L+
Sbjct: 155 DLSSNKIQSI-----YCTDLRVLH 173
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 218 LSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI 277
L+ L + N + ELP E+ L NL LDL+HN L LP E+G+C L N + +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 278 PDMLGNLINLTRLRLSYNRLE 298
P GNL NL L + N LE
Sbjct: 309 PWEFGNLCNLQFLGVEGNPLE 329
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
LDLS I ++ ++ K L LYL GN L LP++I ++NL L L+ N LTSLP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 166 LANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLS------ 219
L + QL+ N + LP L +L+ L + N ++ Q+L L+
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK-----QFLKILTEKSVTG 343
Query: 220 -MLSMRDNK 227
+ +RDN+
Sbjct: 344 LIFYLRDNR 352
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLS 501
P+ I NL L+ LDL N+L SLP E+G +L+ N + +LP G+L NL +L
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322
Query: 502 VGENNLQSIPEEIGTLENLHTL--YLNDN 528
V N L+ +I T +++ L YL DN
Sbjct: 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDN 351
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 42/82 (51%)
Query: 149 LTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV 208
LT L L NSLT LP + NL LRVLDL HN+L LP + LK Y N + T+
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 209 HPDIQYLSNLSMLSMRDNKIRE 230
+ L NL L + N + +
Sbjct: 309 PWEFGNLCNLQFLGVEGNPLEK 330
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 99 KEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENS 158
K + + L L+ +S+T LP ++ L++L L L N+L SLP+++G L +N
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM 304
Query: 159 LTSLPDSLANLQQLRVLDLRHNKLNE--LPMVVYKLTSLKILYLRFNR 204
+T+LP NL L+ L + N L + L ++ K + I YLR NR
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR 352
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 156 ENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYL 215
EN + DS + Q LDL + ++ + ++K L LYL N + + +I+ L
Sbjct: 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNL 269
Query: 216 SNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNEL 274
SNL +L + N++ LP ELG L N + LP E GN L L ++ N L
Sbjct: 270 SNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%)
Query: 241 LVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV 300
L L L N L ELP EI N + L LDL HN L ++P LG+ L N + ++
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 301 PETLSKCVHLNEFNVEG 317
P +L VEG
Sbjct: 309 PWEFGNLCNLQFLGVEG 325
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 243 TLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE 302
LDL++ + + I L L L N L +P + NL NL L LS+NRL S+P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 303 TLSKCVHLNEF 313
L C L F
Sbjct: 288 ELGSCFQLKYF 298
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 505 NNLQ--SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIV 562
+NLQ +I I + L LYLN N+ L +P E+ SNL+++ L + L+ +P+E+
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAEL- 289
Query: 563 VGGPSLIIRYL 573
G ++Y
Sbjct: 290 --GSCFQLKYF 298
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
L L + IT L P V + L +L+ELYL N+L +LP + +T LT L L N LT LP
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 164 DSLAN-LQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV-HPDIQYLSNLS 219
++ + L L+ L + NKL ELP + +LT L L L N++K++ H LS+L+
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 30/178 (16%)
Query: 349 SGGPTQFT-SVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLT 406
+ P+Q + S +++ + +P GI + A+ L + DN +T L P + + L
Sbjct: 11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLK 67
Query: 407 ELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPN 466
EL LG+NQ+ L + +L +L LDL N+L LP+
Sbjct: 68 ELYLGSNQLGALPVGV----------------------FDSLTQLTVLDLGTNQLTVLPS 105
Query: 467 EI-GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTL 523
+ L L+ L + N+L LPR I LT+L++L++ +N L+SIP G + L +L
Sbjct: 106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSL 161
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 33/190 (17%)
Query: 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL-GT 401
+ + P+G PT +Y NQI K+ G+F NL ++ + N L +LP+ + +
Sbjct: 30 RHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86
Query: 402 WVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGN-LRKLKCLDLEENK 460
LT L+LGTNQ++ L PS++ + L LK L + NK
Sbjct: 87 LTQLTVLDLGTNQLTVL-----------------------PSAVFDRLVHLKELFMCCNK 123
Query: 461 LESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIPEEIGTLEN 519
L LP I L L L L NQL S+P A L++L++ + N +I L N
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRN 183
Query: 520 LHTLYLNDNT 529
++ D+T
Sbjct: 184 ----WVADHT 189
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 174 VLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELP 232
+D R + +P + T+ +ILYL N+I + P + L NL L + N++ LP
Sbjct: 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80
Query: 233 PELGE-LKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNIPDMLGNLINLTRL 290
+ + L L LDL N L LP + + L L + N+L +P + L +LT L
Sbjct: 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHL 140
Query: 291 RLSYNRLESVPE 302
L N+L+S+P
Sbjct: 141 ALDQNQLKSIPH 152
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 173 RVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRE 230
++L L N++ +L P V L +LK LYL N++ + + L+ L++L + N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 231 LPPELGE-LKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTR 289
LP + + L +L L + N L ELP+ I T L L L N+L +IP G L+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSS 160
Query: 290 LRLSY 294
L +Y
Sbjct: 161 LTHAY 165
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 49/177 (27%)
Query: 216 SNLSMLSMRDNKIRELPPELGE-LKNLVTLDLAHNHLEELPKEIGNC-TMLVTLDLQHNE 273
+N +L + DN+I +L P + + L NL L L N L LP + + T L LDL N+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 274 LVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXX 333
L +P + ++RL VHL E
Sbjct: 100 LTVLPSAV------------FDRL----------VHLKE--------------------- 116
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ + NK T P G + T + + + NQ+ IP+G F R +L+ + N
Sbjct: 117 ---LFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD 398
L N+ A P G T + ++ NQ+ +P +F R +L ++ M N LT LP
Sbjct: 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG 130
Query: 399 LGTWVGLTELNLGTNQISKL 418
+ LT L L NQ+ +
Sbjct: 131 IERLTHLTHLALDQNQLKSI 150
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
L+L + + LP V +KLT L +L L N++ SLP + +T LT L L EN L SLP
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 164 DSLAN-LQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLS 216
+ + + L QL+ L L N+L +P ++ +LTSL+ ++L N P I YLS
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 147
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 50/164 (30%)
Query: 344 FTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWV 403
T+ P+G P+ S + E N++ +P+G+F + L+K+++ N + SLP +
Sbjct: 19 LTSVPTGIPS---SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV---- 71
Query: 404 GLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLES 463
L KL L L ENKL+S
Sbjct: 72 -----------------------------------------FDKLTKLTILYLHENKLQS 90
Query: 464 LPNEI-GFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGEN 505
LPN + L +L+ L L +NQL S+P I LT+L + + N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 24/125 (19%)
Query: 267 LDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXX 325
L+L+ N+L ++P + L LT+L LS N+++S+P+ + L + +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD--KLTKLTI---------- 80
Query: 326 XXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKV 385
+ L NK + P+G + T + + + NQ+ +P GIF R +L K+
Sbjct: 81 -----------LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 386 NMKDN 390
+ N
Sbjct: 130 WLHTN 134
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 461 LESLPNEIGFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIPEEI-GTLE 518
L S+P G RL L+SN+L SLP + LT L+ LS+ +N +QS+P+ + L
Sbjct: 19 LTSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76
Query: 519 NLHTLYLNDNTCLNNIP---FELALCSNLQIMSLDNCPLSQIPSEI 561
L LYL++N L ++P F+ + L+ ++LD L +P I
Sbjct: 77 KLTILYLHENK-LQSLPNGVFDKL--TQLKELALDTNQLKSVPDGI 119
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD 398
L NK + P G + T + ++ NQI +P G+F + L+ + + +N L SLP
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG 94
Query: 399 L-GTWVGLTELNLGTNQISKLSEDI 422
+ L EL L TNQ+ + + I
Sbjct: 95 VFDKLTQLKELALDTNQLKSVPDGI 119
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 30/167 (17%)
Query: 159 LTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNL 218
LTS+P + + L+L NKL LP V+ L+ L
Sbjct: 19 LTSVPTGIPS--SATRLELESNKLQSLPHGVF----------------------DKLTQL 54
Query: 219 SMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVN 276
+ LS+ N+I+ LP + +L L L L N L+ LP + T L L L N+L +
Sbjct: 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114
Query: 277 IPD-MLGNLINLTRLRLSYNRLE-SVP--ETLSKCVHLNEFNVEGCA 319
+PD + L +L ++ L N + S P + LS+ ++ N +G A
Sbjct: 115 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 161
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 23/109 (21%)
Query: 288 TRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAY 347
TRL L N+L+S+P + F+ + ++LS+N+ +
Sbjct: 31 TRLELESNKLQSLPHGV--------FD---------------KLTQLTKLSLSQNQIQSL 67
Query: 348 PSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
P G + T + + N++ +P G+F + L ++ + N L S+P
Sbjct: 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 51/199 (25%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS 161
N++ L+L + IT L P ++ LT + EL L GN L ++
Sbjct: 64 NLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV---------------------- 100
Query: 162 LPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHP-----DIQY- 214
++A LQ ++ LDL ++ ++ P+ L++L++LYL N+I + P ++QY
Sbjct: 101 --SAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISPLAGLTNLQYL 156
Query: 215 ---------------LSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIG 259
LS L+ L DNKI ++ P L L NL+ + L +N + ++ +
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV-SPLA 214
Query: 260 NCTMLVTLDLQHNELVNIP 278
N + L + L + + N P
Sbjct: 215 NTSNLFIVTLTNQTITNQP 233
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 201 RFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260
F T +QYL+NL L ++DN+I +L P L L + L+L+ N L+ + I
Sbjct: 48 AFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-SAIAG 105
Query: 261 CTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV 300
+ TLDL ++ ++ + G L NL L L N++ ++
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAG-LSNLQVLYLDLNQITNI 144
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSV 502
S+I L+ +K LDL ++ + + L LQ L L NQ+ ++ G LTNL YLS+
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISPLAG-LTNLQYLSI 158
Query: 503 GENNLQSIPEEIGTLENLHTLYLNDN 528
G + + + L L TL +DN
Sbjct: 159 GNAQVSDL-TPLANLSKLTTLKADDN 183
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS 161
N++ L+L + IT L P ++ LT + EL L GN L ++
Sbjct: 70 NLIGLELKDNQITDLTP-LKNLTKITELELSGNPLKNV---------------------- 106
Query: 162 LPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
++A LQ ++ LDL ++ ++ P+ L++L++LYL N+I + P + L+NL
Sbjct: 107 --SAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP-LAGLTNLQY 161
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
LS+ +N++ +L P L L L TL N + ++ + + L+ + L+ N++ ++
Sbjct: 162 LSIGNNQVNDLTP-LANLSKLTTLRADDNKISDI-SPLASLPNLIEVHLKDNQISDV-SP 218
Query: 281 LGNLINLTRLRLS 293
L NL NL + L+
Sbjct: 219 LANLSNLFIVTLT 231
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 202 FNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNC 261
FN T IQYL+NL L ++DN+I +L P L L + L+L+ N L+ + I
Sbjct: 55 FNTGVTTIEGIQYLNNLIGLELKDNQITDLTP-LKNLTKITELELSGNPLKNV-SAIAGL 112
Query: 262 TMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV 300
+ TLDL ++ ++ + G L NL L L N++ ++
Sbjct: 113 QSIKTLDLTSTQITDVTPLAG-LSNLQVLYLDLNQITNI 150
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSV 502
S+I L+ +K LDL ++ + + L LQ L L NQ+ ++ G LTNL YLS+
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISPLAG-LTNLQYLSI 164
Query: 503 GENNLQSIPEEIGTLENLHTLYLNDN 528
G N + + + L L TL +DN
Sbjct: 165 GNNQVNDL-TPLANLSKLTTLRADDN 189
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Query: 106 LDLSKSSITHLP-PSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
LDL + + L + LT L L L N+L +L + + +T L LGLA N L SLP
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 164 -DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTV-HPDIQYLSNLSM 220
+L QL L L N+L LP V+ +LT LK L L N+++++ L+NL
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 221 LSMRDNKIRELP-PELGELKNLVTLDLAHNHLE 252
LS+ N+++ +P L L T+ L N +
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
L L+ + + LP V + LT L++LYL GN+L SLPS + +T L L L N L S+P
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 164 ----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSNL 218
D L NLQ L L N+L +P + +L L+ + L N+ +I YLS
Sbjct: 148 AGAFDKLTNLQ---TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ- 203
Query: 219 SMLSMRDNKIRE 230
+ NK+++
Sbjct: 204 -WIRENSNKVKD 214
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 56/184 (30%)
Query: 355 FTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELN---LG 411
T + +N ++NQ+ + G+F L + + +N L SLP LG + LT+L+ LG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP--LGVFDHLTQLDKLYLG 115
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGN-LRKLKCLDLEENKLESLPNEIGF 470
NQ+ L PS + + L KLK L L N+L+S+P
Sbjct: 116 GNQLKSL-----------------------PSGVFDRLTKLKELRLNTNQLQSIP----- 147
Query: 471 LKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIP----EEIGTLENLHTLYLN 526
A LTNL LS+ N LQS+P + +G L+ + TL+ N
Sbjct: 148 -----------------AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI-TLFGN 189
Query: 527 DNTC 530
C
Sbjct: 190 QFDC 193
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 27/156 (17%)
Query: 238 LKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYN 295
L L L+L +N L+ L + + T L TL L +N+L ++P + +L L +L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 296 RLESVPE-TLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQ 354
+L+S+P + L E + L+ N+ + P+G +
Sbjct: 118 QLKSLPSGVFDRLTKLKE------------------------LRLNTNQLQSIPAGAFDK 153
Query: 355 FTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
T++ +++ NQ+ +P+G F R L + + N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 267 LDLQHNELVNIPDM-LGNLINLTRLRLSYNRLESVPETLSKCVH--LNEFNVEGCAXXXX 323
LDLQ L + D L LT L L YN+L+ TLS V L E G A
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ----TLSAGVFDDLTELGTLGLANNQL 95
Query: 324 XX---XXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAK 380
++ + L N+ + PSG + T + + NQ+ IP G F +
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 381 NLSKVNMKDNLLTSLP 396
NL +++ N L S+P
Sbjct: 156 NLQTLSLSTNQLQSVP 171
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 58/234 (24%)
Query: 146 VTNLTC------LGLAENSLTSLPDSL-ANLQQLRVLDLRHNKLNELPMVVYK-LTSLKI 197
VT TC + SL S+P + A+ ++L DL+ L L ++ LT L
Sbjct: 7 VTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTW 63
Query: 198 LYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKE 257
L L +N+++T+ + +L L TL LA+N L LP
Sbjct: 64 LNLDYNQLQTLSAGV----------------------FDDLTELGTLGLANNQLASLPLG 101
Query: 258 I-GNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNV 315
+ + T L L L N+L ++P + L L LRL+ N+L+S+P F+
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--------GAFD- 152
Query: 316 EGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID 369
+ ++LS N+ + P G + + +I NQ D
Sbjct: 153 --------------KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Query: 106 LDLSKSSITHLP-PSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
LDL + + L + LT L L L N+L +L + + +T L LGLA N L SLP
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 164 -DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTV-HPDIQYLSNLSM 220
+L QL L L N+L LP V+ +LT LK L L N+++++ L+NL
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 221 LSMRDNKIRELP-PELGELKNLVTLDLAHNHLE 252
LS+ N+++ +P L L T+ L N +
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
L L+ + + LP V + LT L++LYL GN+L SLPS + +T L L L N L S+P
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 164 ----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSNL 218
D L NLQ L L N+L +P + +L L+ + L N+ + YLS
Sbjct: 148 AGAFDKLTNLQ---TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQ- 203
Query: 219 SMLSMRDNKIRE 230
+ NK+++
Sbjct: 204 -WIRENSNKVKD 214
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 56/184 (30%)
Query: 355 FTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELN---LG 411
T + +N ++NQ+ + G+F L + + +N L SLP LG + LT+L+ LG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP--LGVFDHLTQLDKLYLG 115
Query: 412 TNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGN-LRKLKCLDLEENKLESLPNEIGF 470
NQ+ L PS + + L KLK L L N+L+S+P
Sbjct: 116 GNQLKSL-----------------------PSGVFDRLTKLKELRLNTNQLQSIP----- 147
Query: 471 LKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIP----EEIGTLENLHTLYLN 526
A LTNL LS+ N LQS+P + +G L+ + TL+ N
Sbjct: 148 -----------------AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI-TLFGN 189
Query: 527 DNTC 530
C
Sbjct: 190 QFDC 193
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 27/156 (17%)
Query: 238 LKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYN 295
L L L+L +N L+ L + + T L TL L +N+L ++P + +L L +L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 296 RLESVPE-TLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQ 354
+L+S+P + L E + L+ N+ + P+G +
Sbjct: 118 QLKSLPSGVFDRLTKLKE------------------------LRLNTNQLQSIPAGAFDK 153
Query: 355 FTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
T++ +++ NQ+ +P+G F R L + + N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 267 LDLQHNELVNIPDM-LGNLINLTRLRLSYNRLESVPETLSKCVH--LNEFNVEGCAXXXX 323
LDLQ L + D L LT L L YN+L+ TLS V L E G A
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ----TLSAGVFDDLTELGTLGLANNQL 95
Query: 324 XX---XXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAK 380
++ + L N+ + PSG + T + + NQ+ IP G F +
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 381 NLSKVNMKDNLLTSLP 396
NL +++ N L S+P
Sbjct: 156 NLQTLSLSTNQLQSVP 171
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 58/234 (24%)
Query: 146 VTNLTC------LGLAENSLTSLPDSL-ANLQQLRVLDLRHNKLNELPMVVYK-LTSLKI 197
VT TC + SL S+P + A+ ++L DL+ L L ++ LT L
Sbjct: 7 VTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTW 63
Query: 198 LYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKE 257
L L +N+++T+ + +L L TL LA+N L LP
Sbjct: 64 LNLDYNQLQTLSAGV----------------------FDDLTELGTLGLANNQLASLPLG 101
Query: 258 I-GNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNV 315
+ + T L L L N+L ++P + L L LRL+ N+L+S+P F+
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--------GAFD- 152
Query: 316 EGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID 369
+ ++LS N+ + P G + + +I NQ D
Sbjct: 153 --------------KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 127/313 (40%), Gaps = 60/313 (19%)
Query: 116 LPPSVEKLT------HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLAN 168
LPP+ + HL + L ++P +I T T L L N ++ L D
Sbjct: 19 LPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDT--TLLDLQNNDISELRKDDFKG 76
Query: 169 LQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNK 227
LQ L L L +NK++++ + L L+ LY+ N + + P++ S+L L + DN+
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR 134
Query: 228 IRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLIN 286
IR++P L+N+ +++ N LE E G L
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---------------------K 173
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTA 346
L LR+S +L +P+ L + +N + L NK A
Sbjct: 174 LNYLRISEAKLTGIPKDLPE--------------------------TLNELHLDHNKIQA 207
Query: 347 YPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLT 406
+++ +Y + HNQI I G S L ++++ +N L+ +P L L
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267
Query: 407 ELNLGTNQISKLS 419
+ L TN I+K+
Sbjct: 268 VVYLHTNNITKVG 280
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 33/264 (12%)
Query: 251 LEELPKEIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESVPETLSKCVH 309
L+ +PKEI T L LDLQ+N++ + D L +L L L N++ + H
Sbjct: 45 LKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI--------H 94
Query: 310 LNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID 369
F+ + + +S+N P P+ S+ + N+I
Sbjct: 95 EKAFS---------------PLRKLQKLYISKNHLVEIPPNLPS---SLVELRIHDNRIR 136
Query: 370 KIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGL--TELNLGTNQISKLSEDIQXXXX 427
K+P G+FS +N++ + M N L + + G + GL L + +++ + +D+
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196
Query: 428 XXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPN-EIGFLKELQRLILQSNQLVS 486
+ KL L L N++ + N + FL L+ L L +N+L
Sbjct: 197 ELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255
Query: 487 LPRAIGHLTNLSYLSVGENNLQSI 510
+P + L L + + NN+ +
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKV 279
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLPD 164
L +S++ +T +P + + L EL+L NK+ ++ + + L LGL N + + +
Sbjct: 177 LRISEAKLTGIPKDLPET--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 165 -SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV 208
SL+ L LR L L +NKL+ +P + L L+++YL N I V
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 146 VTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRI 205
T+L L L+ N + ++ + L+QL LD +H+ L ++ L+ ++YL I
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL---DI 428
Query: 206 KTVHPDIQY------LSNLSMLSMRDNKIRE--LPPELGELKNLVTLDLAHNHLEEL-PK 256
H + + LS+L +L M N +E LP EL+NL LDL+ LE+L P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 257 EIGNCTMLVTLDLQHNELVNI 277
+ + L L++ HN ++
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSL 509
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 167 ANLQQLRVLDLRHNKLNE---LPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSM 223
+L L LDL N L+ + TSLK L L FN + T+ + L L L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 224 RDNKIRELP--PELGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVN--IP 278
+ + ++++ L+NL+ LD++H H I N + L L + N +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 279 DMLGNLINLTRLRLSYNRLESVPET 303
D+ L NLT L LS +LE + T
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPT 488
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 123 LTHLEELYLYGNKLAS--LPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRH 179
L+ LE L + GN LP + NLT L L++ L L P + +L L+VL++ H
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 180 NKLNELPMVVYK-LTSLKILYLRFNRIKTVHP-DIQYL-SNLSMLSMRDNKI 228
N L YK L SL++L N I T ++Q+ S+L+ L++ N
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP 163
LDLS+ I + + + L+HL L L GN + SL +++L L E +L SL
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 164 DS-LANLQQLRVLDLRHNKLN--ELPMVVYKLTSLKILYLRFNRIKTVH 209
+ + +L+ L+ L++ HN + +LP LT+L+ L L N+I++++
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSN--QLVSLPRAIGHLTNLSYL 500
S + +L+KL ++ LE+ P IG LK L+ L + N Q LP +LTNL +L
Sbjct: 97 SGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 501 SVGENNLQSI 510
+ N +QSI
Sbjct: 155 DLSSNKIQSI 164
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVH-PDIQYLSNLSMLS 222
S + +L+VLDL ++ + Y+ L+ L L L N I+++ LS+L L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 223 MRDNKIRELPP-ELGELKNLVTLDLAHNHLE--ELPKEIGNCTMLVTLDLQHNELVNI 277
+ + L +G LK L L++AHN ++ +LP+ N T L LDL N++ +I
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 110/271 (40%), Gaps = 52/271 (19%)
Query: 135 KLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNKLNELPMVVYK-L 192
+LA +P+ I N L L ENS+ + D+ +L+ L +L L N + ++ + + L
Sbjct: 25 ELAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
Query: 193 TSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNH 250
SL L L NR+ TV +YLS L L +R+N I +P + +L LDL
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--- 139
Query: 251 LEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHL 310
+L+ E ++ G L+NL L L L+ +P L+ V L
Sbjct: 140 -----------------ELKRLEYISEAAFEG-LVNLRYLNLGMCNLKDIP-NLTALVRL 180
Query: 311 NEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDK 370
E + G N+ G TS+ + H Q+
Sbjct: 181 EELELSG------------------------NRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLDLGT 401
I F K+L ++N+ N L SLP DL T
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 17/210 (8%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAE-NSLTSL 162
L+L + +T +P + E L+ L EL+L N + S+PS V +L L L E L +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
Query: 163 PD-SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSM 220
+ + L LR L+L L ++P + L L+ L L NR+ + P Q L++L
Sbjct: 148 SEAAFEGLVNLRYLNLGMCNLKDIPNLT-ALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 221 LSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNIP 278
L + ++ + +LK+L L+L+HN+L LP ++ L + L HN
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNC 266
Query: 279 DMLGNLINLTRLRLSYNRLESVPETLSKCV 308
D+L LS+ E+VP + C
Sbjct: 267 DVLW---------LSWWLKETVPSNTTCCA 287
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD--NL 391
+N + L N+ T P+ + + + +N I+ IP F+R +L ++++ + L
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKL 451
V L LNLG + +DI ++ L +L
Sbjct: 145 EYISEAAFEGLVNLRYLNLGMCNL----KDI--------------------PNLTALVRL 180
Query: 452 KCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQS 509
+ L+L N+L+ + P L L++L L Q+ ++ R A L +L L++ NNL S
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 510 IPEEIGT-LENLHTLYLNDN 528
+P ++ T L L ++LN N
Sbjct: 241 LPHDLFTPLHRLERVHLNHN 260
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 35/182 (19%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ +R + P+ P + +N + N I I F ++L + + NL+ +
Sbjct: 19 VICTRRELAEVPASIPV---NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI- 74
Query: 397 LDLGTWVGLTELN---LGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKC 453
++G + GL LN L N+++ + + L KL+
Sbjct: 75 -EVGAFNGLPSLNTLELFDNRLTTVPTQ----------------------AFEYLSKLRE 111
Query: 454 LDLEENKLESLP----NEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQS 509
L L N +ES+P N + L+ L L+ + +S A L NL YL++G NL+
Sbjct: 112 LWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS-EAAFEGLVNLRYLNLGMCNLKD 170
Query: 510 IP 511
IP
Sbjct: 171 IP 172
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 13/146 (8%)
Query: 141 SQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYL 200
S G ++ L L L+ N + ++ + L+QL LD +H+ L ++ L+ ++YL
Sbjct: 392 SDFGTIS-LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450
Query: 201 RFNRIKTVHPDIQY------LSNLSMLSMRDNKIRE--LPPELGELKNLVTLDLAHNHLE 252
I H + + LS+L +L M N +E LP EL+NL LDL+ LE
Sbjct: 451 ---DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507
Query: 253 EL-PKEIGNCTMLVTLDLQHNELVNI 277
+L P + + L L++ HN ++
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHNNFFSL 533
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 167 ANLQQLRVLDLRHNKLNE---LPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSM 223
+L L LDL N L+ + SLK L L FN + T+ + L L L
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427
Query: 224 RDNKIRELP--PELGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVN--IP 278
+ + ++++ L+NL+ LD++H H I N + L L + N +P
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487
Query: 279 DMLGNLINLTRLRLSYNRLESVPET 303
D+ L NLT L LS +LE + T
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPT 512
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 123 LTHLEELYLYGNKLAS--LPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRH 179
L+ LE L + GN LP + NLT L L++ L L P + +L L+VL++ H
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 180 NKLNELPMVVYK-LTSLKILYLRFNRIKTVHP-DIQYL-SNLSMLSMRDNKI 228
N L YK L SL++L N I T ++Q+ S+L+ L++ N
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP 163
LDLS+ I + + + L+HL L L GN + SL +++L L E +L SL
Sbjct: 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140
Query: 164 D-SLANLQQLRVLDLRHNKLN--ELPMVVYKLTSLKILYLRFNRIKTVH 209
+ + +L+ L+ L++ HN + +LP LT+L+ L L N+I++++
Sbjct: 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSN--QLVSLPRAIGHLTNLSYL 500
S + +L+KL ++ LE+ P IG LK L+ L + N Q LP +LTNL +L
Sbjct: 121 SGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178
Query: 501 SVGENNLQSI 510
+ N +QSI
Sbjct: 179 DLSSNKIQSI 188
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVH-PDIQYLSNLSMLS 222
S + +L+VLDL ++ + Y+ L+ L L L N I+++ LS+L L
Sbjct: 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130
Query: 223 MRDNKIRELPP-ELGELKNLVTLDLAHNHLE--ELPKEIGNCTMLVTLDLQHNELVNI 277
+ + L +G LK L L++AHN ++ +LP+ N T L LDL N++ +I
Sbjct: 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 102/250 (40%), Gaps = 25/250 (10%)
Query: 141 SQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR--HNKLNELPMVVYKLTSLKIL 198
+Q V NL GL +P SLANL L L + +N + +P + KLT L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 199 YLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRE----LPPELGELKNLVTLDLAHNHLE-E 253
Y+ + PD +LS + L D LPP + L NLV + N +
Sbjct: 107 YITHTNVSGAIPD--FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 254 LPKEIGNCTMLVT-LDLQHNELVN-IPDMLGNLINLTRLRLSYNRLESVPETL------S 305
+P G+ + L T + + N L IP NL NL + LS N LE L +
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 306 KCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEH 365
+ +HL + ++ +N + L N+ G TQ ++S+N
Sbjct: 224 QKIHLAKNSLA------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 366 NQI-DKIPYG 374
N + +IP G
Sbjct: 278 NNLCGEIPQG 287
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 41/216 (18%)
Query: 113 ITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQL 172
+ +PP++ KLT L LY+ ++ ++PD L+ ++ L
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSG----------------------AIPDFLSQIKTL 127
Query: 173 RVLDLRHNKLN-ELPMVVYKLTSLKILYLRFNRIKTVHPD-IQYLSNL--SMLSMRDNKI 228
LD +N L+ LP + L +L + NRI PD S L SM R+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 229 RELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLD-------LQHNELVNIPDML 281
++PP L NL +DL+ N LE G+ ++L D L N L +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLE------GDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 282 GNLINLTRLRLSYNRL-ESVPETLSKCVHLNEFNVE 316
G NL L L NR+ ++P+ L++ L+ NV
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 445 IGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLV-SLPRAIGHLTNLSYLSVG 503
G+ + + + L +N L ++G K L L L++N++ +LP+ + L L L+V
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 504 ENNLQSIPEEIGTLENLHTLYLNDNTCLNNIP 535
NNL + G L+ +N CL P
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 110/271 (40%), Gaps = 52/271 (19%)
Query: 135 KLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNKLNELPMVVYK-L 192
+LA +P+ I N L L ENS+ + D+ +L+ L +L L N + ++ + + L
Sbjct: 25 ELAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
Query: 193 TSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNH 250
SL L L NR+ TV +YLS L L +R+N I +P + +L LDL
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--- 139
Query: 251 LEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHL 310
+L+ E ++ G L+NL L L L+ +P L+ V L
Sbjct: 140 -----------------ELKRLEYISEAAFEG-LVNLRYLNLGMCNLKDIPN-LTALVRL 180
Query: 311 NEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDK 370
E + G N+ G TS+ + H Q+
Sbjct: 181 EELELSG------------------------NRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLDLGT 401
I F K+L ++N+ N L SLP DL T
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 17/210 (8%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAE-NSLTSL 162
L+L + +T +P + E L+ L EL+L N + S+PS V +L L L E L +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
Query: 163 PD-SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSM 220
+ + L LR L+L L ++P + L L+ L L NR+ + P Q L++L
Sbjct: 148 SEAAFEGLVNLRYLNLGMCNLKDIPNLT-ALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 221 LSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHNELVNIP 278
L + ++ + +LK+L L+L+HN+L LP ++ L + L HN
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW---- 262
Query: 279 DMLGNLINLTRLRLSYNRLESVPETLSKCV 308
N L LS+ E+VP + C
Sbjct: 263 -----HCNCDVLWLSWWLKETVPSNTTCCA 287
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD--NL 391
+N + L N+ T P+ + + + +N I+ IP F+R +L ++++ + L
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKL 451
V L LNLG + +DI ++ L +L
Sbjct: 145 EYISEAAFEGLVNLRYLNLGMCNL----KDI--------------------PNLTALVRL 180
Query: 452 KCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQS 509
+ L+L N+L+ + P L L++L L Q+ ++ R A L +L L++ NNL S
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 510 IPEEIGT-LENLHTLYLNDN 528
+P ++ T L L ++LN N
Sbjct: 241 LPHDLFTPLHRLERVHLNHN 260
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 35/182 (19%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ +R + P+ P + +N + N I I F ++L + + NL+ +
Sbjct: 19 VICTRRELAEVPASIPV---NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI- 74
Query: 397 LDLGTWVGLTELN---LGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKC 453
++G + GL LN L N+++ + + L KL+
Sbjct: 75 -EVGAFNGLPSLNTLELFDNRLTTVPTQ----------------------AFEYLSKLRE 111
Query: 454 LDLEENKLESLP----NEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQS 509
L L N +ES+P N + L+ L L+ + +S A L NL YL++G NL+
Sbjct: 112 LWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS-EAAFEGLVNLRYLNLGMCNLKD 170
Query: 510 IP 511
IP
Sbjct: 171 IP 172
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 28/233 (12%)
Query: 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGL 405
A P G P ++ N+I +P F +NL+ + + N+L +D + GL
Sbjct: 24 AVPVGIPAASQRIF---LHGNRISHVPAASFRACRNLTILWLHSNVLAR--IDAAAFTGL 78
Query: 406 TELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESL- 464
L Q+ LS++ Q P++ L +L L L+ L+ L
Sbjct: 79 ALL----EQLD-LSDNAQ-------------LRSVDPATFHGLGRLHTLHLDRCGLQELG 120
Query: 465 PNEIGFLKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSIPEE-IGTLENLHT 522
P L LQ L LQ N L +LP L NL++L + N + S+PE L +L
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 523 LYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYLKM 575
L L+ N + P L + L LS +P+E + P ++YL++
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA--PLRALQYLRL 231
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 156 ENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLT-SLKILYLRFNRIKTVHPDIQY 214
+ L ++P + Q R+ L N+++ +P ++ +L IL+L N + + D
Sbjct: 19 QQGLQAVPVGIPAASQ-RIF-LHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAA 74
Query: 215 LSNLSMLSMRD----NKIREL-PPELGELKNLVTLDLAHNHLEEL-PKEIGNCTMLVTLD 268
+ L++L D ++R + P L L TL L L+EL P L L
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 269 LQHNELVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVH 309
LQ N L +PD +L NLT L L NR+ SVPE + +H
Sbjct: 135 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 117 PPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRV 174
P + L L L+L L L P + L L L +N+L +LPD + +L L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 175 LDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPP 233
L L N+++ +P ++ L SL L L NR+ VHP + RD
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH----------AFRD-------- 198
Query: 234 ELGELKNLVTLDLAHNHLEELPKE 257
L L+TL L N+L LP E
Sbjct: 199 ----LGRLMTLYLFANNLSALPTE 218
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSL- 162
L L +++ LP + L +L L+L+GN+++S+P + + +L L L +N + +
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 163 PDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKIL-YLRFN 203
P + +L +L L L N L+ LP L L+ L YLR N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRLN 232
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGL 405
A P G P ++ N+I +P F +NL+ + + N+L +D + GL
Sbjct: 25 AVPVGIPAASQRIF---LHGNRISHVPAASFRACRNLTILWLHSNVLAR--IDAAAFTGL 79
Query: 406 TELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESL- 464
L + LS++ Q P++ L +L L L+ L+ L
Sbjct: 80 ALL-----EQLDLSDNAQ-------------LRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 465 PNEIGFLKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSIPEE-IGTLENLHT 522
P L LQ L LQ N L +LP L NL++L + N + S+PE L +L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 523 LYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYLKM 575
L L+ N + P L + L LS +P+E + P ++YL++
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA--PLRALQYLRL 232
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 156 ENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLT-SLKILYLRFNRIKTVHPDIQY 214
+ L ++P + Q R+ L N+++ +P ++ +L IL+L N + + D
Sbjct: 20 QQGLQAVPVGIPAASQ-RIF-LHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAA 75
Query: 215 LSNLSMLSMRD----NKIREL-PPELGELKNLVTLDLAHNHLEEL-PKEIGNCTMLVTLD 268
+ L++L D ++R + P L L TL L L+EL P L L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 269 LQHNELVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVH 309
LQ N L +PD +L NLT L L NR+ SVPE + +H
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 117 PPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRV 174
P + L L L+L L L P + L L L +N+L +LPD + +L L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 175 LDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPP 233
L L N+++ +P ++ L SL L L NR+ VHP + RD
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH----------AFRD-------- 199
Query: 234 ELGELKNLVTLDLAHNHLEELPKE 257
L L+TL L N+L LP E
Sbjct: 200 ----LGRLMTLYLFANNLSALPTE 219
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSL- 162
L L +++ LP + L +L L+L+GN+++S+P + + +L L L +N + +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 163 PDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKIL-YLRFN 203
P + +L +L L L N L+ LP L L+ L YLR N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRLN 233
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 152/393 (38%), Gaps = 70/393 (17%)
Query: 165 SLANLQQLRVLDLRH-NKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSM 223
S +NL+ L ++L + +LP +Y L L+ L + NR +S +
Sbjct: 486 SWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNR------------GISAAQL 533
Query: 224 RDNKIRELPPELGELKNLVTLDLAHNHLEELPKE--IGNCTMLVTLDLQHNELVNIPDML 281
+ + R L + + +N+LEE P + L LD HN++ ++ +
Sbjct: 534 KADWTR-LADDEDTGPKIQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHL-EAF 591
Query: 282 GNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXX------XXXXXXIN 335
G + LT L+L YN++E +PE C ++ VEG
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDF--CAFTDQ--VEGLGFSHNKLKYIPNIFNAKSVYVXG 647
Query: 336 NITLSRNKFTAYP-----SGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
++ S NK + S + + ++ +N+I K P +F+ +S + + +N
Sbjct: 648 SVDFSYNKIGSEGRNISCSXDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 391 LLTSLPLDL-----GTWVG---LTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXP 442
L TS+P + G + LT ++L N+++ LS+D +
Sbjct: 708 LXTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT---------------- 751
Query: 443 SSIGNLRKLKCLDLEENKLESLPNE-------IGFLKELQRLILQSNQLVSLPRAIGHLT 495
L L D+ N S P + F QR + L P I
Sbjct: 752 -----LPYLSNXDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806
Query: 496 NLSYLSVGENNLQSIPEEIGTLENLHTLYLNDN 528
+L L +G N+++ + E++ L+ L + DN
Sbjct: 807 SLIQLQIGSNDIRKVDEKL--TPQLYILDIADN 837
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 89/187 (47%), Gaps = 24/187 (12%)
Query: 111 SSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQ 170
+S+ LPP L+EL + N+LASLP+ + L L N LTSLP + LQ
Sbjct: 134 TSLPVLPPG------LQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLPMLPSGLQ 184
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRE 230
+L V D + L LP +YKL + +N T P + S L L + N++
Sbjct: 185 ELSVSDNQLASLPTLPSELYKLWA-------YNNRLTSLPALP--SGLKELIVSGNRLTS 235
Query: 231 LPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRL 290
LP ELK L+ ++ N L LP L++L + N+L +P+ L +L + T +
Sbjct: 236 LPVLPSELKELM---VSGNRLTSLPMLPSG---LLSLSVYRNQLTRLPESLIHLSSETTV 289
Query: 291 RLSYNRL 297
L N L
Sbjct: 290 NLEGNPL 296
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 18/168 (10%)
Query: 147 TNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIK 206
++T L + +N+LTSLP A +LR L++ N+L LP++ L L I F+
Sbjct: 61 AHITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSLPVLPPGLLELSI----FSNPL 113
Query: 207 TVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVT 266
T P + S L L + N++ LP L+ L D L LP E+ C +
Sbjct: 114 THLPALP--SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSEL--CKLWA- 168
Query: 267 LDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
+N+L ++P ML + L L +S N+L S+P S+ L +N
Sbjct: 169 ---YNNQLTSLP-MLPS--GLQELSVSDNQLASLPTLPSELYKLWAYN 210
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 23/187 (12%)
Query: 342 NKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGT 401
N+ T+ P P + ++ NQ+ +P + L K+ +N LTSLP+
Sbjct: 131 NQLTSLPVLPP----GLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLPMLPS- 181
Query: 402 WVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKL 461
GL EL++ NQ++ L PS LK L + N+L
Sbjct: 182 --GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSG------LKELIVSGNRL 233
Query: 462 ESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLH 521
SLP EL+ L++ N+L SLP L + LSV N L +PE + L +
Sbjct: 234 TSLPV---LPSELKELMVSGNRLTSLPMLPSGLLS---LSVYRNQLTRLPESLIHLSSET 287
Query: 522 TLYLNDN 528
T+ L N
Sbjct: 288 TVNLEGN 294
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 21/122 (17%)
Query: 451 LKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSI 510
L+ L + +N+L SLP EL +L +NQL SLP + L LSV +N L S+
Sbjct: 143 LQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSLPMLP---SGLQELSVSDNQLASL 196
Query: 511 PEEIGTLEN-LHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIP------SEIVV 563
P TL + L+ L+ +N L ++P AL S L+ + + L+ +P E++V
Sbjct: 197 P----TLPSELYKLWAYNNR-LTSLP---ALPSGLKELIVSGNRLTSLPVLPSELKELMV 248
Query: 564 GG 565
G
Sbjct: 249 SG 250
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 34/226 (15%)
Query: 175 LDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELP 232
LDL N L L + L++L L I+T+ Q LS+LS L + N I+ L
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 233 ----PELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHN--ELVNIPDMLGNLIN 286
L L+ LV L+ LE P IG+ L L++ HN + +P+ NL N
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTA 346
L L LS N+++S+ T + +H +N I
Sbjct: 153 LEHLDLSSNKIQSIYCTDLRVLH---------QMPLLNLSLDLSLNPMNFIQ-------- 195
Query: 347 YPSGGPTQFTSVY--SINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
P F + + + NQ+ +P GIF R +L K+ + N
Sbjct: 196 -----PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSN--QLVSLPRAIGHLTNLSYL 500
S + +L+KL L+ LE+ P IG LK L+ L + N Q LP +LTNL +L
Sbjct: 99 SGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 501 SVGENNLQSI 510
+ N +QSI
Sbjct: 157 DLSSNKIQSI 166
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP 163
LDLS+ I + + + L+HL L L GN + SL +++L L E +L SL
Sbjct: 59 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLE 118
Query: 164 D-SLANLQQLRVLDLRHNKLN--ELPMVVYKLTSLKILYLRFNRIKTVH 209
+ + +L+ L+ L++ HN + +LP LT+L+ L L N+I++++
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 14/116 (12%)
Query: 95 FLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLG 153
++R + NI + LPPS L EL+L GNK+ + + + + NL LG
Sbjct: 175 YIRIADTNITTIPQG------LPPS------LTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 154 LAENSLTSLPD-SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV 208
L+ NS++++ + SLAN LR L L +NKL ++P + ++++YL N I +
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 114/285 (40%), Gaps = 57/285 (20%)
Query: 229 RELPPELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVNI-PDMLGNLIN 286
++LPP+ LDL +N + E+ + N L TL L +N++ I P L+
Sbjct: 48 KDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTA 346
L RL LS N+L+ +PE + K L E V N IT R
Sbjct: 102 LERLYLSKNQLKELPEKMPKT--LQELRVHE-----------------NEITKVRKSVF- 141
Query: 347 YPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLT 406
G Q V + + I G F K LS + + D +T++P L LT
Sbjct: 142 ---NGLNQMI-VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP--SLT 195
Query: 407 ELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPN 466
EL+L N+I+K+ +S+ L L L L N + ++ N
Sbjct: 196 ELHLDGNKITKVDA----------------------ASLKGLNNLAKLGLSFNSISAVDN 233
Query: 467 -EIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSI 510
+ L+ L L +N+LV +P + + + + NN+ +I
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 6/188 (3%)
Query: 117 PPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLAN-LQQLRVL 175
P + L LE LYL N+L LP ++ L L + EN +T + S+ N L Q+ V+
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 176 DLRHNKLNELPMVVYKLTSLKIL-YLRFNRIKTVHPDIQYLSNLSMLSMRDNKIREL-PP 233
+L N L + +K L Y+R +L+ L + NKI ++
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210
Query: 234 ELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRL 292
L L NL L L+ N + + + N L L L +N+LV +P L + + + L
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270
Query: 293 SYNRLESV 300
N + ++
Sbjct: 271 HNNNISAI 278
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 15/231 (6%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ L NK T G +++++ +N+I KI G F+ L ++ + N L LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 397 LDLGTWVGLTELNLGTNQISKLSEDI----QXXXXXXXXXXXXXXXXXXPSSIGNLRKLK 452
+ L EL + N+I+K+ + + + ++KL
Sbjct: 117 EKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 453 CLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRA-IGHLTNLSYLSVGENNLQSIP 511
+ + + + ++P G L L L N++ + A + L NL+ L + N++ ++
Sbjct: 175 YIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV- 231
Query: 512 EEIGTLEN---LHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPS 559
+ G+L N L L+LN+N L +P LA +Q++ L N +S I S
Sbjct: 232 -DNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGS 280
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 14/116 (12%)
Query: 95 FLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLG 153
++R + NI + LPPS L EL+L GNK+ + + + + NL LG
Sbjct: 175 YIRIADTNITTIPQG------LPPS------LTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 154 LAENSLTSLPD-SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV 208
L+ NS++++ + SLAN LR L L +NKL ++P + ++++YL N I +
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 114/285 (40%), Gaps = 57/285 (20%)
Query: 229 RELPPELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVNI-PDMLGNLIN 286
++LPP+ LDL +N + E+ + N L TL L +N++ I P L+
Sbjct: 48 KDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTA 346
L RL LS N+L+ +PE + K L E V N IT R
Sbjct: 102 LERLYLSKNQLKELPEKMPKT--LQELRVHE-----------------NEITKVRKSVF- 141
Query: 347 YPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLT 406
G Q V + + I G F K LS + + D +T++P L LT
Sbjct: 142 ---NGLNQMI-VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP--SLT 195
Query: 407 ELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPN 466
EL+L N+I+K+ +S+ L L L L N + ++ N
Sbjct: 196 ELHLDGNKITKVDA----------------------ASLKGLNNLAKLGLSFNSISAVDN 233
Query: 467 -EIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSI 510
+ L+ L L +N+LV +P + + + + NN+ +I
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 6/188 (3%)
Query: 117 PPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLAN-LQQLRVL 175
P + L LE LYL N+L LP ++ L L + EN +T + S+ N L Q+ V+
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 176 DLRHNKLNELPMVVYKLTSLKIL-YLRFNRIKTVHPDIQYLSNLSMLSMRDNKIREL-PP 233
+L N L + +K L Y+R +L+ L + NKI ++
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210
Query: 234 ELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRL 292
L L NL L L+ N + + + N L L L +N+LV +P L + + + L
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270
Query: 293 SYNRLESV 300
N + ++
Sbjct: 271 HNNNISAI 278
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 15/231 (6%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ L NK T G +++++ +N+I KI G F+ L ++ + N L LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 397 LDLGTWVGLTELNLGTNQISKLSEDI----QXXXXXXXXXXXXXXXXXXPSSIGNLRKLK 452
+ L EL + N+I+K+ + + + ++KL
Sbjct: 117 EKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 453 CLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRA-IGHLTNLSYLSVGENNLQSIP 511
+ + + + ++P G L L L N++ + A + L NL+ L + N++ ++
Sbjct: 175 YIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV- 231
Query: 512 EEIGTLEN---LHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPS 559
+ G+L N L L+LN+N L +P LA +Q++ L N +S I S
Sbjct: 232 -DNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGS 280
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 122/493 (24%), Positives = 181/493 (36%), Gaps = 126/493 (25%)
Query: 89 LNIEKEFLRCKEENILNLDLSKSSITHL-PPSVEKLTHLEELYLYGNKLASLPSQIGYVT 147
L I+KE R N+ LDL S I L P + + L HL EL LY L+ + GY
Sbjct: 62 LTIDKEAFR-NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY-- 118
Query: 148 NLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKT 207
NL+ L LDL N++ + LYL
Sbjct: 119 ------------------FRNLKALTRLDLSKNQI-------------RSLYL------- 140
Query: 208 VHPDIQYLSNLSMLSMRDNKI-----RELPPELGELKNLVTLDLAHNHL-EELPKEIGNC 261
HP L++L + N+I EL P G K L LA N L + + G C
Sbjct: 141 -HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRVSVDWGKC 197
Query: 262 T------MLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNV 315
+L LD+ N D+ GN N + ++ ++ L+ + F
Sbjct: 198 MNPFRNMVLEILDVSGNGWT--VDITGNFSN------AISKSQAFSLILAHHIMGAGFGF 249
Query: 316 EGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGI 375
+ ++ LS + S + +N +N+I+KI
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Query: 376 FSRAKNLSKVNMKDNLLTSLPLDLGTWVGL---TELNLGTNQISKLSEDIQXXXXXXXXX 432
F NL +N+ NLL L + GL ++L N I+ + +
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYS--SNFYGLPKVAYIDLQKNHIAIIQD------------ 355
Query: 433 XXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIG 492
+ L KL+ LDL +N L + I F+ + + L N+LV+LP+ I
Sbjct: 356 ----------QTFKFLEKLQTLDLRDNALTT----IHFIPSIPDIFLSGNKLVTLPK-IN 400
Query: 493 HLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLD-- 550
NL +LS EN LENL LY L +P +LQI+ L+
Sbjct: 401 LTANLIHLS--ENR----------LENLDILYF-----LLRVP-------HLQILILNQN 436
Query: 551 ---NCPLSQIPSE 560
+C Q PSE
Sbjct: 437 RFSSCSGDQTPSE 449
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 164 DSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTV-HPDIQYLSNLSML 221
D L L+VL L HN LN LP V+ LT+L+ L L NR+ + H D+ +NL +L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531
Query: 222 SMRDNKIRELPPELGELKNLVTLDLAHN 249
+ N++ L P +L LD+ HN
Sbjct: 532 DISRNQL--LAPNPDVFVSLSVLDITHN 557
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 58/216 (26%)
Query: 101 ENILNLDLSKSSIT--HLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENS 158
E + LDL +++T H PS+ +++L GNKL +LP +I NL + L+EN
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIP------DIFLSGNKLVTLP-KINLTANL--IHLSENR 412
Query: 159 LTSLP--DSLANLQQLRVLDLRHNKLN------------------------------ELP 186
L +L L + L++L L N+ + EL
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472
Query: 187 MVVYK-LTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKI-----RELPPELGELK 239
V++ L+ L++LYL N + ++ P + +L+ L LS+ N++ +LP
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------ 526
Query: 240 NLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELV 275
NL LD++ N L ++ L LD+ HN+ +
Sbjct: 527 NLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFI 560
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 34/226 (15%)
Query: 175 LDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELP 232
LDL N L L + L++L L I+T+ Q LS+LS L + N I+ L
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 233 ----PELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHN--ELVNIPDMLGNLIN 286
L L+ LV ++ LE P IG+ L L++ HN + +P+ NL N
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTA 346
L L LS N+++S+ T + +H +N I
Sbjct: 153 LEHLDLSSNKIQSIYCTDLRVLH---------QMPLLNLSLDLSLNPMNFIQ-------- 195
Query: 347 YPSGGPTQFTSVY--SINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
P F + + + NQ+ +P GIF R +L K+ + N
Sbjct: 196 -----PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP 163
LDLS+ I + + + L+HL L L GN + SL +++L L E +L SL
Sbjct: 59 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 118
Query: 164 D-SLANLQQLRVLDLRHNKLN--ELPMVVYKLTSLKILYLRFNRIKTVH 209
+ + +L+ L+ L++ HN + +LP LT+L+ L L N+I++++
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSN--QLVSLPRAIGHLTNLSYL 500
S + +L+KL ++ LE+ P IG LK L+ L + N Q LP +LTNL +L
Sbjct: 99 SGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 501 SVGENNLQSI 510
+ N +QSI
Sbjct: 157 DLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 34/226 (15%)
Query: 175 LDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELP 232
LDL N L L + L++L L I+T+ Q LS+LS L + N I+ L
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 233 ----PELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHN--ELVNIPDMLGNLIN 286
L L+ LV ++ LE P IG+ L L++ HN + +P+ NL N
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTA 346
L L LS N+++S+ T + +H +N I
Sbjct: 152 LEHLDLSSNKIQSIYCTDLRVLH---------QMPLLNLSLDLSLNPMNFIQ-------- 194
Query: 347 YPSGGPTQFTSVY--SINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
P F + + + NQ+ +P GIF R +L K+ + N
Sbjct: 195 -----PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP 163
LDLS+ I + + + L+HL L L GN + SL +++L L E +L SL
Sbjct: 58 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 117
Query: 164 D-SLANLQQLRVLDLRHNKLN--ELPMVVYKLTSLKILYLRFNRIKTVH 209
+ + +L+ L+ L++ HN + +LP LT+L+ L L N+I++++
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSN--QLVSLPRAIGHLTNLSYL 500
S + +L+KL ++ LE+ P IG LK L+ L + N Q LP +LTNL +L
Sbjct: 98 SGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 501 SVGENNLQSI 510
+ N +QSI
Sbjct: 156 DLSSNKIQSI 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 34/226 (15%)
Query: 175 LDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELP 232
LDL N L L + L++L L I+T+ Q LS+LS L + N I+ L
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 233 ----PELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHN--ELVNIPDMLGNLIN 286
L L+ LV ++ LE P IG+ L L++ HN + +P+ NL N
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTA 346
L L LS N+++S+ T + +H +N I
Sbjct: 152 LEHLDLSSNKIQSIYCTDLRVLH---------QMPLLNLSLDLSLNPMNFIQ-------- 194
Query: 347 YPSGGPTQFTSVY--SINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
P F + + + NQ+ +P GIF R +L K+ + N
Sbjct: 195 -----PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP 163
LDLS+ I + + + L+HL L L GN + SL +++L L E +L SL
Sbjct: 58 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 117
Query: 164 D-SLANLQQLRVLDLRHNKLN--ELPMVVYKLTSLKILYLRFNRIKTVH 209
+ + +L+ L+ L++ HN + +LP LT+L+ L L N+I++++
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSN--QLVSLPRAIGHLTNLSYL 500
S + +L+KL ++ LE+ P IG LK L+ L + N Q LP +LTNL +L
Sbjct: 98 SGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 501 SVGENNLQSI 510
+ N +QSI
Sbjct: 156 DLSSNKIQSI 165
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 109 SKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD-SLA 167
S + LP + + + ELYL GN+ +P ++ +LT + L+ N +++L + S +
Sbjct: 18 SNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75
Query: 168 NLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDIQY--LSNLSMLSMR 224
N+ QL L L +N+L +P + L SL++L L N I V P+ + LS LS L++
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIG 134
Query: 225 DNKI 228
N +
Sbjct: 135 ANPL 138
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELP-KEIGNCTMLVTLDLQHNELV 275
+++ L + N+ +P EL K+L +DL++N + L + N T L+TL L +N L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 276 NI-PDMLGNLINLTRLRLSYNRLESVPE 302
I P L +L L L N + VPE
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPE 119
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNE-IGFLKELQRLILQSNQLVSLP-RAIGHLTNLSY 499
P + N + L +DL N++ +L N+ + +L LIL N+L +P R L +L
Sbjct: 47 PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106
Query: 500 LSVGENNLQSIPEEIGTLENLHTL 523
LS+ N++ +PE G +L L
Sbjct: 107 LSLHGNDISVVPE--GAFNDLSAL 128
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 236 GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM-LGNLINLTRLRLSY 294
G +++ L L N +PKE+ N L +DL +N + + + N+ L L LSY
Sbjct: 28 GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 295 NRLESVP 301
NRL +P
Sbjct: 88 NRLRCIP 94
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 198 LYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEEL-P 255
LYL N+ V ++ +L+++ + +N+I L + + L+TL L++N L + P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 256 KEIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRL 297
+ L L L N++ +P+ +L L+ L + N L
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 34/226 (15%)
Query: 175 LDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELP 232
LDL N L L + L++L L I+T+ Q LS+LS L + N I+ L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 233 ----PELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHN--ELVNIPDMLGNLIN 286
L L+ LV ++ LE P IG+ L L++ HN + +P+ NL N
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTA 346
L L LS N+++S+ T + +H +N I
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLH---------QMPLLNLSLDLSLNPMNFIQ-------- 193
Query: 347 YPSGGPTQFTSVY--SINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
P F + + + NQ+ +P GIF R +L K+ + N
Sbjct: 194 -----PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP 163
LDLS+ I + + + L+HL L L GN + SL +++L L E +L SL
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 164 D-SLANLQQLRVLDLRHNKLN--ELPMVVYKLTSLKILYLRFNRIKTVH 209
+ + +L+ L+ L++ HN + +LP LT+L+ L L N+I++++
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSN--QLVSLPRAIGHLTNLSYL 500
S + +L+KL ++ LE+ P IG LK L+ L + N Q LP +LTNL +L
Sbjct: 97 SGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 501 SVGENNLQSI 510
+ N +QSI
Sbjct: 155 DLSSNKIQSI 164
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 450 KLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGEN 505
K+K LDL N++ S+P ++ L+ LQ L + SNQL S+P + LT+L Y+ + +N
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 143 IGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRF 202
+G + L L S+T + L ++ +D + L +P + T K L L
Sbjct: 9 VGSFHFVCALALIVGSMTPFSNELESM-----VDYSNRNLTHVPKDLPPRT--KALSLSQ 61
Query: 203 NRIKTVH-PDIQYLSNLSMLSMRDNKIRELPPELGEL-KNLVTLDLAHNHLEELPKEIGN 260
N I + PDI +LS L +L + N+IR L + ++L LD++HN L+ I
Sbjct: 62 NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ----NISC 117
Query: 261 CTM--LVTLDLQHNELVNIP--DMLGNLINLTRLRLSYNRLE 298
C M L LDL N+ +P GNL LT L LS +
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 33/121 (27%)
Query: 101 ENILNLDLSKSSITH-----LPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLA 155
E+IL L+LS + +T LPP V+ L L+ N++ S+P + ++ L L +A
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLD------LHNNRIMSIPKDVTHLQALQELNVA 481
Query: 156 ENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYL 215
N L S+PD V +LTSL+ ++L N P I+YL
Sbjct: 482 SNQLKSVPDG----------------------VFDRLTSLQYIWLHDNPWDCTCPGIRYL 519
Query: 216 S 216
S
Sbjct: 520 S 520
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 473 ELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
+++ L L +N+++S+P+ + HL L L+V N L+S+P+ + L +L ++L+DN
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 96 LRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGL 154
RC + LDL + I +P V L L+EL + N+L S+P + +T+L + L
Sbjct: 445 FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504
Query: 155 AEN 157
+N
Sbjct: 505 HDN 507
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 266 TLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE 302
LDL +N +++IP + +L L L ++ N+L+SVP+
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 25/180 (13%)
Query: 126 LEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNEL 185
LE + N L LP ++ + LT + N L +LPD +L+ L V R N L +L
Sbjct: 217 LESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV---RDNYLTDL 272
Query: 186 PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIR---ELPPELGELKNLV 242
P + LT L + F+ + + P++ YL+ S N+IR +LPP L E
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASS------NEIRSLCDLPPSLEE----- 321
Query: 243 TLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE 302
L++++N L ELP L+ N L +P++ NL +L + YN L P+
Sbjct: 322 -LNVSNNKLIELPALPPRLERLIA---SFNHLAEVPELPQ---NLKQLHVEYNPLREFPD 374
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 175/431 (40%), Gaps = 93/431 (21%)
Query: 128 ELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPM 187
EL L L+SLP ++ +L + NSLT LP+ +L+ L V + L++LP
Sbjct: 75 ELELNNLGLSSLPELPPHLESLVA---SCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131
Query: 188 VVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLA 247
+ L+ L + N+++ + P++Q S L ++ + +N +++LP L+ +
Sbjct: 132 L------LEYLGVSNNQLEKL-PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA---G 181
Query: 248 HNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKC 307
+N LEELP E+ N L + +N L +PD+ ++L + N LE +PE
Sbjct: 182 NNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE----- 232
Query: 308 VHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQ 367
+ N+ T++Y+ N N
Sbjct: 233 --------------------------LQNLPF---------------LTTIYADN---NL 248
Query: 368 IDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXX 427
+ +P +L +N++DN LT LP LT L++ N S LSE
Sbjct: 249 LKTLP----DLPPSLEALNVRDNYLTDLP---ELPQSLTFLDVSENIFSGLSELPPNLYY 301
Query: 428 XXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSL 487
P S L+ L++ NKL LP L+RLI N L +
Sbjct: 302 LNASSNEIRSLCDLPPS------LEELNVSNNKLIELP---ALPPRLERLIASFNHLAEV 352
Query: 488 PRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIM 547
P NL L V N L+ P+ ++E+L N+ L +P L NL+ +
Sbjct: 353 PELP---QNLKQLHVEYNPLREFPDIPESVEDLRM-----NSHLAEVP---ELPQNLKQL 401
Query: 548 SLDNCPLSQIP 558
++ PL + P
Sbjct: 402 HVETNPLREFP 412
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIG--YVTNLTCLGLAENSLTSLP 163
L SK + ++P S+ T L L L N L+ L ++ +TNL L L+ N L +
Sbjct: 23 LSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 164 -DSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPD-IQYLSNLSM 220
++ + LR LDL N L+ L ++ L +L++L L N I V + + ++ L
Sbjct: 81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140
Query: 221 LSMRDNKIRELPPEL----GELKNLVTLDLAHNHLEELP 255
L + N+I P EL +L L+ LDL+ N L++LP
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 32/181 (17%)
Query: 134 NKLASLPSQIGYVTNLTC----LGLAENSLTSLPDSLANLQQLRVLDLRHNKLNEL--PM 187
+KLAS S + N C L ++ L ++P SL + L LDL HN L+ L
Sbjct: 1 DKLASGRSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEW 58
Query: 188 VVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLA 247
+LT+L L L N + + + + NL LDL+
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFISSE----------------------AFVPVPNLRYLDLS 96
Query: 248 HNHLEELPKEI-GNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPETLS 305
NHL L + + + L L L +N +V + + ++ L +L LS N++ P L
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 306 K 306
K
Sbjct: 157 K 157
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178
++ L ++ +L+L GNKL + + + NL L L EN + L SL +L++L+ L L
Sbjct: 61 GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 118
Query: 179 HNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGEL 238
HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+IR + P L L
Sbjct: 119 HNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIRRIVP-LARL 175
Query: 239 KNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L+ NH+ +L + + L L+L E +N P
Sbjct: 176 TKLQNLYLSKNHISDL-RALRGLKNLDVLELFSQEALNKP 214
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 102 NILNLDLSKSSITHLP-PSVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAE-NS 158
N+ L+L + +T +P + L+ L+EL+L N + S+PS + +L L L E
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 159 LTSLPD-SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHP-DIQYLS 216
L+ + + + L LR L+L L E+P + L L L L N + + P Q L
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREIPNLT-PLIKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 217 NLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELPKEI 258
+L L M ++I+ + L++LV ++LAHN+L LP ++
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
+N + L N+ T P+G + + + +N I+ IP F+R +L ++++ +
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173
Query: 394 SLPLDLGTWVGLTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKC 453
S + G + GL+ L + L E ++ L KL
Sbjct: 174 SY-ISEGAFEGLSNLRYLNLAMCNLREI---------------------PNLTPLIKLDE 211
Query: 454 LDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIP 511
LDL N L ++ P L LQ+L + +Q+ + R A +L +L +++ NNL +P
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271
Query: 512 EEIGT-LENLHTLYLNDN 528
++ T L +L ++L+ N
Sbjct: 272 HDLFTPLHHLERIHLHHN 289
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 156 ENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDIQY 214
+ L ++P + Q R+ L N+++ +P ++ +L IL+L N + + D
Sbjct: 19 QQGLQAVPTGIPASSQ-RIF-LHGNRISYVPAASFQSCRNLTILWLHSNALAGI--DAAA 74
Query: 215 LSNLSMLSMRD----NKIREL-PPELGELKNLVTLDLAHNHLEEL-PKEIGNCTMLVTLD 268
+ L++L D ++R + P L +L TL L L+EL P L L
Sbjct: 75 FTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 269 LQHNELVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVH 309
LQ N L +PD +L NLT L L NR+ SVPE + +H
Sbjct: 135 LQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 33/183 (18%)
Query: 108 LSKSSITHLPP-SVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSL--P 163
L + I+++P S + +L L+L+ N LA + + +T L L L++N+ + P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 164 DSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQY--LSNLSM 220
+ L L L L L EL P + L +L+ LYL+ N ++ + PD + L NL+
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQAL-PDNTFRDLGNLTH 156
Query: 221 LSMRDNKI-------------------------RELPPELGELKNLVTLDLAHNHLEELP 255
L + N+I R P +L L+TL L N+L LP
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 256 KEI 258
E+
Sbjct: 217 AEV 219
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 52/187 (27%)
Query: 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGL 405
A P+G P ++ N+I +P F +NL+ + + N L + D + GL
Sbjct: 24 AVPTGIPASSQRIF---LHGNRISYVPAASFQSCRNLTILWLHSNALAGI--DAAAFTGL 78
Query: 406 T---ELNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLE 462
T +L+L N ++ + P++ L L L L+ L+
Sbjct: 79 TLLEQLDLSDNAQLRVVD---------------------PTTFRGLGHLHTLHLDRCGLQ 117
Query: 463 SLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPE-EIGTLENLH 521
E+G P L L YL + +NNLQ++P+ L NL
Sbjct: 118 ----ELG------------------PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 522 TLYLNDN 528
L+L+ N
Sbjct: 156 HLFLHGN 162
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLD 176
+ L +L L+L+GN++ S+P + +L L L +N + + P + +L +L L
Sbjct: 147 TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLY 206
Query: 177 LRHNKLNELPM-VVYKLTSLKILYLRFN 203
L N L+ LP V+ L SL+ YLR N
Sbjct: 207 LFANNLSMLPAEVLVPLRSLQ--YLRLN 232
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 134 NKLASLPSQIGYVTNLTCLGLAENSLTSLPDS-LANLQQLRVLDLRHNKLNELPMVVYKL 192
N L +P + T T L +++N ++ L S + +L +LR+L + HN++ L + V+K
Sbjct: 10 NGLIHVPKDLSQKT--TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67
Query: 193 TS-LKILYLRFNRIKTV--HPDIQYLSNLSMLSMRDNKIRELP--PELGELKNLVTLDLA 247
L+ L L N++ + HP + NL L + N LP E G + L L L+
Sbjct: 68 NQELEYLDLSHNKLVKISCHPTV----NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
Query: 248 HNHLEE 253
HLE+
Sbjct: 124 TTHLEK 129
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 450 KLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGEN 505
++K LDL NK++S+P ++ L+ LQ L + SNQL S+P I LT+L + + N
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 152 LGLAENSLT-SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILY--------LRF 202
L + N LT ++ ++ +L +L L L+ N+L EL + T +K L + +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 203 NRIKTVHPDIQYLSNLSMLS--MRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260
+ K + L +L+M S + D R LPP + LDL N ++ +PK++
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK------VLDLHSNKIKSIPKQVVK 442
Query: 261 CTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLE-SVP--ETLSKCVHLNEFNVE 316
L L++ N+L ++PD + L +L ++ L N + S P + LS+ ++ N +
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 502
Query: 317 GCA 319
G A
Sbjct: 503 GSA 505
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 33/121 (27%)
Query: 101 ENILNLDLSKSSITH-----LPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLA 155
+++L+L++S + +T LPP ++ L L+ NK+ S+P Q+ + L L +A
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLD------LHSNKIKSIPKQVVKLEALQELNVA 452
Query: 156 ENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYL 215
N L S+PD + + +LTSL+ ++L N P I YL
Sbjct: 453 SNQLKSVPDGIFD----------------------RLTSLQKIWLHTNPWDCSCPRIDYL 490
Query: 216 S 216
S
Sbjct: 491 S 491
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 473 ELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
++ L L SN++ S+P+ + L L L+V N L+S+P+ I L +L ++L+ N
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 96 LRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI 143
RC I LDL + I +P V KL L+EL + N+L S+P I
Sbjct: 416 FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 31/138 (22%)
Query: 103 ILNLDLSKSSITH-LPPSVEKLTHLEELYLYGNKLASLPSQIGYVT----NLTCLGLAEN 157
L+LD S + +T + + LT LE L L N+L L S+I +T +L L +++N
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-SKIAEMTTQMKSLQQLDISQN 384
Query: 158 SLT--------SLPDSLANLQ----------------QLRVLDLRHNKLNELPMVVYKLT 193
S++ S SL +L +++VLDL NK+ +P V KL
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE 444
Query: 194 SLKILYLRFNRIKTVHPD 211
+L+ L + N++K+V PD
Sbjct: 445 ALQELNVASNQLKSV-PD 461
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Query: 244 LDLAHNHLEELPKE-IGNCTMLVTLDLQHN---ELVNIPDMLGNLINLTRLRLSYNRLES 299
LD ++N L + E G+ T L TL LQ N EL I +M + +L +L +S N + S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV-S 387
Query: 300 VPETLSKCVHLNEF-NVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSV 358
E C ++ + I + L NK + P + ++
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQ-VVKLEAL 446
Query: 359 YSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+N NQ+ +P GIF R +L K+ + N
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178
++ L ++ +L+L GNKL + + + NL L L EN + L SL +L++L+ L L
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120
Query: 179 HNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGEL 238
HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+I ++ P L L
Sbjct: 121 HNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-LAGL 177
Query: 239 KNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L+ NH+ +L + + L L+L E +N P
Sbjct: 178 TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 216
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178
++ L ++ +L+L GNKL + + + NL L L EN + L SL +L++L+ L L
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120
Query: 179 HNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGEL 238
HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+I ++ P L L
Sbjct: 121 HNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-LAGL 177
Query: 239 KNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L+ NH+ +L + + L L+L E +N P
Sbjct: 178 TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 216
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 205 IKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHL 251
IK+V IQYL N++ L + NK+ ++ P L LKNL L L N +
Sbjct: 58 IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178
++ L ++ +L+L GNKL + + + NL L L EN + L SL +L++L+ L L
Sbjct: 61 GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 118
Query: 179 HNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGEL 238
HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+I ++ P L L
Sbjct: 119 HNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-LAGL 175
Query: 239 KNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L+ NH+ +L + + L L+L E +N P
Sbjct: 176 TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 214
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 33/213 (15%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
L L+++S L PS+++L L + L + S PS + NLT L L+ N++ ++ D
Sbjct: 443 LQLTRNSFA-LVPSLQRLM-LRRVAL--KNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 166 -LANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD-----IQYLSNLS 219
L L++L +LDL+HN L L K +P ++ LS+L
Sbjct: 499 MLEGLEKLEILDLQHNNLARL-------------------WKHANPGGPIYFLKGLSHLH 539
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNI 277
+L++ N E+P E +L L +DL N+L LP + N L +L+LQ N + ++
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
Query: 278 PDMLGN--LINLTRLRLSYNRLESVPETLSKCV 308
+ NLT L + +N + E+++ V
Sbjct: 600 EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 632
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 107 DLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSL-PD 164
D S +T +P + T++ L L N+L LP+ + LT L + N+++ L P+
Sbjct: 10 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMR 224
L L+VL+L+HN+L++L + + +NL+ L +
Sbjct: 68 LCQKLPMLKVLNLQHNELSQLSDKTFA----------------------FCTNLTELHLM 105
Query: 225 DNKIRELP--PELGELKNLVTLDLAHNHL 251
N I+++ P + + KNL+TLDL+HN L
Sbjct: 106 SNSIQKIKNNPFVKQ-KNLITLDLSHNGL 133
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTW 402
K T P PT T +N HNQ+ ++P F+R L+ +++ N ++ L +L
Sbjct: 15 KLTQVPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Query: 403 VGLTE-LNLGTNQISKLSE 420
+ + + LNL N++S+LS+
Sbjct: 72 LPMLKVLNLQHNELSQLSD 90
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 350 GGPTQF----TSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVG 404
GGP F + ++ +N E N D+IP +F L +++ N L +LP V
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585
Query: 405 LTELNLGTNQISKLSEDI 422
L LNL N I+ + + +
Sbjct: 586 LKSLNLQKNLITSVEKKV 603
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 45/206 (21%)
Query: 216 SNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEEL-PKEIGNCTMLVTLDLQHNE 273
+N+++L++ N++R LP L +LD+ N + +L P+ ML L+LQHNE
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 274 LVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXX 333
L + D +T + C +L E ++ +
Sbjct: 85 LSQLSD----------------------KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
+ + LS N ++ G Q ++ + +N+I L
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA---------------------LK 161
Query: 394 SLPLDLGTWVGLTELNLGTNQISKLS 419
S LD+ L +L L +NQI + S
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFS 187
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 33/213 (15%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
L L+++S L PS+++L L + L + S PS + NLT L L+ N++ ++ D
Sbjct: 448 LQLTRNSFA-LVPSLQRLM-LRRVAL--KNVDSSPSPFQPLRNLTILDLSNNNIANINDD 503
Query: 166 -LANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD-----IQYLSNLS 219
L L++L +LDL+HN L L K +P ++ LS+L
Sbjct: 504 MLEGLEKLEILDLQHNNLARL-------------------WKHANPGGPIYFLKGLSHLH 544
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNI 277
+L++ N E+P E +L L +DL N+L LP + N L +L+LQ N + ++
Sbjct: 545 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 604
Query: 278 PDMLGN--LINLTRLRLSYNRLESVPETLSKCV 308
+ NLT L + +N + E+++ V
Sbjct: 605 EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 637
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 107 DLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSL-PD 164
D S +T +P + T++ L L N+L LP+ + LT L + N+++ L P+
Sbjct: 15 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMR 224
L L+VL+L+HN+L++L + + +NL+ L +
Sbjct: 73 LCQKLPMLKVLNLQHNELSQLSDKTFA----------------------FCTNLTELHLM 110
Query: 225 DNKIRELP--PELGELKNLVTLDLAHNHL 251
N I+++ P + + KNL+TLDL+HN L
Sbjct: 111 SNSIQKIKNNPFVKQ-KNLITLDLSHNGL 138
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTW 402
K T P PT T +N HNQ+ ++P F+R L+ +++ N ++ L +L
Sbjct: 20 KLTQVPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 76
Query: 403 VGLTE-LNLGTNQISKLSE 420
+ + + LNL N++S+LS+
Sbjct: 77 LPMLKVLNLQHNELSQLSD 95
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 350 GGPTQF----TSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVG 404
GGP F + ++ +N E N D+IP +F L +++ N L +LP V
Sbjct: 531 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 590
Query: 405 LTELNLGTNQISKLSEDI 422
L LNL N I+ + + +
Sbjct: 591 LKSLNLQKNLITSVEKKV 608
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 45/206 (21%)
Query: 216 SNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEEL-PKEIGNCTMLVTLDLQHNE 273
+N+++L++ N++R LP L +LD+ N + +L P+ ML L+LQHNE
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 274 LVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXX 333
L + D +T + C +L E ++ +
Sbjct: 90 LSQLSD----------------------KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 127
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
+ + LS N ++ G Q ++ + +N+I L
Sbjct: 128 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA---------------------LK 166
Query: 394 SLPLDLGTWVGLTELNLGTNQISKLS 419
S LD+ L +L L +NQI + S
Sbjct: 167 SEELDIFANSSLKKLELSSNQIKEFS 192
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 33/213 (15%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
L L+++S L PS+++L L + L + S PS + NLT L L+ N++ ++ D
Sbjct: 453 LQLTRNSFA-LVPSLQRLM-LRRVAL--KNVDSSPSPFQPLRNLTILDLSNNNIANINDD 508
Query: 166 -LANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD-----IQYLSNLS 219
L L++L +LDL+HN L L K +P ++ LS+L
Sbjct: 509 MLEGLEKLEILDLQHNNLARL-------------------WKHANPGGPIYFLKGLSHLH 549
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNI 277
+L++ N E+P E +L L +DL N+L LP + N L +L+LQ N + ++
Sbjct: 550 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 609
Query: 278 -PDMLG-NLINLTRLRLSYNRLESVPETLSKCV 308
+ G NLT L + +N + E+++ V
Sbjct: 610 EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 642
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 107 DLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSL-PD 164
D S +T +P + T++ L L N+L LP+ + LT L + N+++ L P+
Sbjct: 20 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMR 224
L L+VL+L+HN+L++L + + +NL+ L +
Sbjct: 78 LCQKLPMLKVLNLQHNELSQLSDKTFA----------------------FCTNLTELHLM 115
Query: 225 DNKIRELP--PELGELKNLVTLDLAHNHL 251
N I+++ P + + KNL+TLDL+HN L
Sbjct: 116 SNSIQKIKNNPFVKQ-KNLITLDLSHNGL 143
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTW 402
K T P PT T +N HNQ+ ++P F+R L+ +++ N ++ L +L
Sbjct: 25 KLTQVPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 81
Query: 403 VGLTE-LNLGTNQISKLSE 420
+ + + LNL N++S+LS+
Sbjct: 82 LPMLKVLNLQHNELSQLSD 100
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 350 GGPTQF----TSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVG 404
GGP F + ++ +N E N D+IP +F L +++ N L +LP V
Sbjct: 536 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 595
Query: 405 LTELNLGTNQISKLSEDI 422
L LNL N I+ + + +
Sbjct: 596 LKSLNLQKNLITSVEKKV 613
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 45/206 (21%)
Query: 216 SNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEEL-PKEIGNCTMLVTLDLQHNE 273
+N+++L++ N++R LP L +LD+ N + +L P+ ML L+LQHNE
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 274 LVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXX 333
L + D +T + C +L E ++ +
Sbjct: 95 LSQLSD----------------------KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 132
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
+ + LS N ++ G Q ++ + +N+I L
Sbjct: 133 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA---------------------LK 171
Query: 394 SLPLDLGTWVGLTELNLGTNQISKLS 419
S LD+ L +L L +NQI + S
Sbjct: 172 SEELDIFANSSLKKLELSSNQIKEFS 197
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 200 LRFNRIKTVHPDIQYL-----SNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEE 253
+R+N H + ++ SN+++L++ N++R LPP L LD N + +
Sbjct: 4 VRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISK 63
Query: 254 LPKEIGNC-TMLVTLDLQHNELVNIPDM-LGNLINLTRLRLSYNRLESV 300
L E+ +L L+LQHNEL I D NLT L L N + +
Sbjct: 64 LEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKI 112
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 126/514 (24%), Positives = 206/514 (40%), Gaps = 79/514 (15%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSLP 163
LD +SI+ L P + + L L+ L L N+L+ + Q + TNLT L L NS+ +
Sbjct: 54 LDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIK 113
Query: 164 DS-LANLQQLRVLDLRHNKLNELPM---------VVYKLTSLKILYLRFNRIKTVHPDIQ 213
+ N + L LDL HN L+ + L KIL LR +++
Sbjct: 114 SNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALR-------SEELE 166
Query: 214 YLSNLSM--LSMRDNKIRELPP----ELGELKNLVTLDLAHN-HL-EELPKEIGNCTMLV 265
+L N S+ L + N ++E P +G+L L+ + N HL E+L E+ N T +
Sbjct: 167 FLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQ 225
Query: 266 TLDLQHNELVNIPDMLGN---LINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCAXX 321
L L +N+L+ + + NLT+L LSYN L V + S L ++E
Sbjct: 226 NLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQ 285
Query: 322 XXXXXXXXXXXXINNITLSRNKFT-------AYPSGGPTQFTSVYSI---NFEHNQIDKI 371
+ ++L R FT ++P+ F + + N + N I
Sbjct: 286 RLSPRSFYGLSNLRYLSLKR-AFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPST 344
Query: 372 PYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTE-----LNLGTNQISKLSEDIQXXX 426
F+ +L +++ + L T+V L LNL N ISK++
Sbjct: 345 KSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIAN------ 398
Query: 427 XXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESL--PNEIGFLKELQRLILQSNQL 484
+ L +L+ LDL N++E E L+ + + L N+
Sbjct: 399 ----------------GTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 485 VSLPRA----IGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELAL 540
+ L + + L L V N+ P L NL L L++N N L
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEG 502
Query: 541 CSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYLK 574
NL+I+ + L+++ GGP + +LK
Sbjct: 503 LENLEILDFQHNNLARLWKRANPGGP---VNFLK 533
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 107 DLSKSSITHLPPSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSL-PD 164
D S +TH+P + +++ L L N+L LP + + L L NS++ L P+
Sbjct: 10 DCSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMR 224
L L+VL+L+HN+L+++ + + +NL+ L +
Sbjct: 68 LCQILPLLKVLNLQHNELSQISDQTFV----------------------FCTNLTELDLM 105
Query: 225 DNKIRELPPE-LGELKNLVTLDLAHNHL 251
N I ++ KNL+ LDL+HN L
Sbjct: 106 SNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 133 GNKLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNKLNELPMVVY- 190
G LAS+P+ I T + L L +N +T L P L QL LDL +N+L LP V+
Sbjct: 18 GKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75
Query: 191 KLTSLKILYLRFNRIKTV 208
KLT L L L N++K++
Sbjct: 76 KLTQLTQLSLNDNQLKSI 93
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 113 ITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP-DSLANL 169
IT L P V ++LT L L L N+L LP+ + +T LT L L +N L S+P + NL
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Query: 170 QQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQY 214
+ L + L +N + ILYL +R + HP + +
Sbjct: 102 KSLTHIWLLNNP--------WDCACSDILYL--SRWISQHPGLVF 136
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
L N+ T G + T + ++ ++NQ+ +P G+F + L+++++ DN L S+P
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPRAIGHLTNLSYL 500
P L +L LDL+ N+L LP + L +L +L L NQL S+PR G NL L
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSL 104
Query: 501 S 501
+
Sbjct: 105 T 105
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ + L N+ T P+G + T + ++ NQ+ IP G F K+L+ + + +N
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 244 LDLAHNHLEEL-PKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVP 301
L L N + +L P T L LDL +N+L +P + L LT+L L+ N+L+S+P
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 302 E 302
Sbjct: 95 R 95
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 133 GNKLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNKLNELPMVVY- 190
G LAS+P+ I T + L L +N +T L P L QL LDL +N+L LP V+
Sbjct: 26 GKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 83
Query: 191 KLTSLKILYLRFNRIKTV 208
KLT L L L N++K++
Sbjct: 84 KLTQLTQLSLNDNQLKSI 101
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 113 ITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP-DSLANL 169
IT L P V ++LT L L L N+L LP+ + +T LT L L +N L S+P + NL
Sbjct: 50 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 109
Query: 170 QQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQY 214
+ L + L +N + ILYL +R + HP + +
Sbjct: 110 KSLTHIWLLNNP--------WDCACSDILYL--SRWISQHPGLVF 144
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 342 NKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
N+ T G + T + ++ ++NQ+ +P G+F + L+++++ DN L S+P
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPRAIGHLTNLSYL 500
P L +L LDL+ N+L LP + L +L +L L NQL S+PR G NL L
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSL 112
Query: 501 S 501
+
Sbjct: 113 T 113
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ + L N+ T P+G + T + ++ NQ+ IP G F K+L+ + + +N
Sbjct: 64 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 244 LDLAHNHLEEL-PKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVP 301
L L N + +L P T L LDL +N+L +P + L LT+L L+ N+L+S+P
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 302 E 302
Sbjct: 103 R 103
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 133 GNKLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNKLNELPMVVY- 190
G LAS+P+ I T + L L +N +T L P L QL LDL +N+L LP V+
Sbjct: 18 GKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75
Query: 191 KLTSLKILYLRFNRIKTV 208
KLT L L L N++K++
Sbjct: 76 KLTQLTQLSLNDNQLKSI 93
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 342 NKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
N+ T G + T + ++ ++NQ+ +P G+F + L+++++ DN L S+P
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 193 TSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNH 250
T+ ++LYL NRI + P + L+ L+ L + +N++ LP + +L L L L N
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 251 LEELPK 256
L+ +P+
Sbjct: 90 LKSIPR 95
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 113 ITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP-DSLANL 169
IT L P V ++LT L L L N+L LP+ + +T LT L L +N L S+P + NL
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Query: 170 QQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQY 214
+ L + L +N + ILYL +R + HP + +
Sbjct: 102 RSLTHIWLLNNP--------WDCACSDILYL--SRWISQHPWLVF 136
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPR-AIGHLTNLSY 499
P L +L LDL+ N+L LP + L +L +L L NQL S+PR A +L +L++
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTH 106
Query: 500 LSVGENNLQSIPEEI 514
+ + N +I
Sbjct: 107 IWLLNNPWDCACSDI 121
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ + L N+ T P+G + T + ++ NQ+ IP G F ++L+ + + +N
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 244 LDLAHNHLEEL-PKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVP 301
L L N + +L P T L LDL +N+L +P + L LT+L L+ N+L+S+P
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 302 E 302
Sbjct: 95 R 95
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL---PSQIGYVTNLTCLGLAENS 158
N+ L LS + I+ L P ++ LT LEEL + N+L +L PS L+ L L N
Sbjct: 64 NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSAC-----LSRLFLDNNE 117
Query: 159 LTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRI 205
L DSL +L+ L +L +R+NKL + M+ + L+ L++L L N I
Sbjct: 118 LRD-TDSLIHLKNLEILSIRNNKLKSIVMLGF-LSKLEVLDLHGNEI 162
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 212 IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQH 271
+Q+ +NL L + N+I +L P L +L L L + N L+ L C L L L +
Sbjct: 59 MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFLDN 115
Query: 272 NELVNIPDMLGNLINLTRLRLSYNRLESV 300
NEL + D L +L NL L + N+L+S+
Sbjct: 116 NELRDT-DSLIHLKNLEILSIRNNKLKSI 143
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 443 SSIGNLRKLKCLDLEENKLESL---PNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSY 499
S + +L KL+ L + N+L++L P+ L RL L +N+L I HL NL
Sbjct: 79 SPLKDLTKLEELSVNRNRLKNLNGIPSAC-----LSRLFLDNNELRDTDSLI-HLKNLEI 132
Query: 500 LSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532
LS+ N L+SI +G L L L L+ N N
Sbjct: 133 LSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 8/174 (4%)
Query: 106 LDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAE-NSLTSL 162
L+L + +T +P + E L+ L EL+L N + S+PS V +L L L E L +
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187
Query: 163 PD-SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSM 220
+ + L L+ L+L + ++P + L L+ L + N + P LS+L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246
Query: 221 LSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELPKEIGN-CTMLVTLDLQHN 272
L + ++++ + L +LV L+LAHN+L LP ++ LV L L HN
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 33/202 (16%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
+N + L N T PSG + + + +N I+ IP F+R +L ++++ + L
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE--LK 182
Query: 394 SLP-LDLGTWVGLTE---LNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLR 449
L + G + GL LNLG I + ++ L
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDM------------------------PNLTPLV 218
Query: 450 KLKCLDLEENKL-ESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNL 507
L+ L++ N E P L L++L + ++Q+ + R A L +L L++ NNL
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
Query: 508 QSIPEEIGT-LENLHTLYLNDN 528
S+P ++ T L L L+L+ N
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHN 300
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 12/163 (7%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLG---LAENSLTSLPDSLANLQQLRVL 175
++ L ++ +L+L GNKL + I +TNL LG L EN + L SL +L++L+ L
Sbjct: 60 GIQYLPNVTKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSL 114
Query: 176 DLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPEL 235
L HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+I ++ P L
Sbjct: 115 SLEHNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-L 171
Query: 236 GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L L+ NH+ +L + + L L+L E +N P
Sbjct: 172 AGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 213
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 12/163 (7%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLG---LAENSLTSLPDSLANLQQLRVL 175
++ L ++ +L+L GNKL + I +TNL LG L EN + L SL +L++L+ L
Sbjct: 81 GIQYLPNVTKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 135
Query: 176 DLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPEL 235
L HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+I ++ P L
Sbjct: 136 SLEHNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-L 192
Query: 236 GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L L+ NH+ +L + + L L+L E +N P
Sbjct: 193 AGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 234
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 12/163 (7%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLG---LAENSLTSLPDSLANLQQLRVL 175
++ L ++ +L+L GNKL + I +TNL LG L EN + L SL +L++L+ L
Sbjct: 81 GIQYLPNVTKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 135
Query: 176 DLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPEL 235
L HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+I ++ P L
Sbjct: 136 SLEHNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-L 192
Query: 236 GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L L+ NH+ +L + + L L+L E +N P
Sbjct: 193 AGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 234
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
Query: 167 ANLQQLRVLD-LRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD 225
ANL++ V D + N+LN + ++ + IK+V IQYL N++ L +
Sbjct: 47 ANLKKKSVTDAVTQNELNSIDQIIANNSD----------IKSVQ-GIQYLPNVTKLFLNG 95
Query: 226 NKIRELPPELGELKNLVTLDLAHNHL 251
NK+ ++ P L LKNL L L N +
Sbjct: 96 NKLTDIKP-LTNLKNLGWLFLDENKI 120
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 12/163 (7%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLG---LAENSLTSLPDSLANLQQLRVL 175
++ L ++ +L+L GNKL + I +TNL LG L EN + L SL +L++L+ L
Sbjct: 81 GIQYLPNVTKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 135
Query: 176 DLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPEL 235
L HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+I ++ P L
Sbjct: 136 SLEHNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-L 192
Query: 236 GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L L+ NH+ +L + + L L+L E +N P
Sbjct: 193 AGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 234
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
Query: 167 ANLQQLRVLD-LRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD 225
ANL++ V D + N+LN + ++ + IK+V IQYL N++ L +
Sbjct: 47 ANLKKKSVTDAVTQNELNSIDQIIANNSD----------IKSVQ-GIQYLPNVTKLFLNG 95
Query: 226 NKIRELPPELGELKNLVTLDLAHNHL 251
NK+ ++ P L LKNL L L N +
Sbjct: 96 NKLTDIKP-LTNLKNLGWLFLDENKI 120
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 12/163 (7%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLG---LAENSLTSLPDSLANLQQLRVL 175
++ L ++ +L+L GNKL + I +TNL LG L EN + L SL +L++L+ L
Sbjct: 58 GIQYLPNVTKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 112
Query: 176 DLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPEL 235
L HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+I ++ P L
Sbjct: 113 SLEHNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-L 169
Query: 236 GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L L+ NH+ +L + + L L+L E +N P
Sbjct: 170 AGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 211
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 63/251 (25%)
Query: 341 RNKFTAYPSGGPTQ---------------------FTSVYSINFEHNQIDKIPYGIFSRA 379
R +F A P G PT+ F + + N + + G F+
Sbjct: 20 RKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79
Query: 380 KNLSKVNMKDNLLTSLPLDLGTWVG-LTELNLGTNQISKLSEDIQXXXXXXXXXXXXXXX 438
NL + ++ N L +PL + T + LT+L++ N+I L + +
Sbjct: 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM---------------- 123
Query: 439 XXXPSSIGNLRKLKCLDLEENKLESLPNE-IGFLKELQRLILQSNQLVSLP-RAIGHLTN 496
+L LK L++ +N L + + L L++L L+ L S+P A+ HL
Sbjct: 124 ------FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 497 LSYLSVGENNLQSIPE-------EIGTLENLHTLYLNDNT--CLNNIPFELALCSNLQIM 547
L L + N+ +I + + LE H YL+ T CL + NL +
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--------NLTSL 229
Query: 548 SLDNCPLSQIP 558
S+ +C L+ +P
Sbjct: 230 SITHCNLTAVP 240
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 117/295 (39%), Gaps = 35/295 (11%)
Query: 134 NKLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNKLNELPMVVYKL 192
++ AS P +L L L EN ++++ P + NL LR L LR N+L +P+ V+
Sbjct: 50 DEFASFP-------HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT- 101
Query: 193 TSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHL 251
LSNL+ L + +NKI L + +L NL +L++ N L
Sbjct: 102 ---------------------GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 252 EELP-KEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPE-TLSKCV 308
+ + L L L+ L +IP + L +L L LRL + + ++ + + +
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200
Query: 309 HLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQI 368
L + + +++++ TA P + +N +N I
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 369 DKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQISKLSEDI 422
I + L ++ + L + P L LN+ NQ++ L E +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 25/170 (14%)
Query: 408 LNLGTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESL-PN 466
L+LG N+I L++D + L+ L+L EN + ++ P
Sbjct: 37 LDLGKNRIKTLNQD----------------------EFASFPHLEELELNENIVSAVEPG 74
Query: 467 EIGFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLY 524
L L+ L L+SN+L +P + L+NL+ L + EN + + + + L NL +L
Sbjct: 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134
Query: 525 LNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYLK 574
+ DN + + ++L+ ++L+ C L+ IP+E + LI+ L+
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 138/328 (42%), Gaps = 51/328 (15%)
Query: 191 KLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNH 250
+L S+ L + ++ ++ I+YL+NL L++ N+I ++ P L L L L + N
Sbjct: 42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK 99
Query: 251 LEELPKEIGNCTMLVTLDLQHNELVNIPDM--LGNLINLTRLRLSYNRLESVPETLSKCV 308
+ ++ + N T L L L + NI D+ L NL L L N S LS
Sbjct: 100 ITDI-SALQNLTNLRELYLNED---NISDISPLANLTKXYSLNLGANHNLSDLSPLSNXT 155
Query: 309 HLNEFNVEGCAXXXXXXXXXXXXXXINNIT----LSRNKFTAYPSGGPTQFTSVYSINFE 364
LN V I N+T LS N TS++
Sbjct: 156 GLNYLTV--------TESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207
Query: 365 HNQI-DKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQ 423
NQI D P +R L+ + + +N +T L L LT L +GTNQIS +
Sbjct: 208 VNQITDITPVANXTR---LNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDI----- 258
Query: 424 XXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQ 483
+++ +L KLK L++ N++ + + + L +L L L +NQ
Sbjct: 259 -------------------NAVKDLTKLKXLNVGSNQISDI-SVLNNLSQLNSLFLNNNQ 298
Query: 484 LVSLP-RAIGHLTNLSYLSVGENNLQSI 510
L + IG LTNL+ L + +N++ I
Sbjct: 299 LGNEDXEVIGGLTNLTTLFLSQNHITDI 326
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 119 SVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178
++ L ++ +L+L GNKL + + + NL L L EN + L SL +L++L+ L L
Sbjct: 58 GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 115
Query: 179 HNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGEL 238
HN ++++ +V+ L L+ LYL N+I + + L+ L LS+ DN+I ++ P L L
Sbjct: 116 HNGISDINGLVH-LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-LACL 172
Query: 239 KNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L L L+ NH+ +L + + L L+L E +N P
Sbjct: 173 TKLQNLYLSKNHISDL-RALCGLKNLDVLELFSQEALNKP 211
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
L L+ + IT L P V + L +L++LY NKL ++P+ + +T LT L L +N L S+P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 164 -DSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLR 201
+ NL+ L + L +N + I+YLR
Sbjct: 98 RGAFDNLKSLTHIYLYNNP--------WDCECRDIMYLR 128
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 460 KLESLPNEIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNLQSIPEEI-GTL 517
+L S+P G + QRL L +NQ+ L P HL NL L N L +IP + L
Sbjct: 23 RLASVP--AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80
Query: 518 ENLHTLYLNDNTCLNNIP 535
L L LNDN L +IP
Sbjct: 81 TQLTQLDLNDNH-LKSIP 97
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLS 216
S S +L N Q +R L +P + T + L+L N+I + P + +L
Sbjct: 8 SQCSCDQTLVNCQNIR--------LASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLV 57
Query: 217 NLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPK 256
NL L NK+ +P + +L L LDL NHL+ +P+
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ L+ N+ T G ++ + F N++ IP G+F + L+++++ DN L S+P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ NK TA P+G + T + ++ N + IP G F K+L+ + + +N
Sbjct: 64 FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 7/149 (4%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSL-P 163
+D +T +P ++ + + E+ L N + +P L + L+ N ++ L P
Sbjct: 16 VDCRGKGLTEIPTNLPET--ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 164 DSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPD-IQYLSNLSML 221
D+ L+ L L L NK+ ELP +++ L SL++L L N+I + D Q L NL++L
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133
Query: 222 SMRDNKIRELPP-ELGELKNLVTLDLAHN 249
S+ DNK++ + L+ + T+ LA N
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 335 NNITLSRNK-FTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
NNI R K T P+ P T I E N I IP G FS K L ++++ +N ++
Sbjct: 13 NNIVDCRGKGLTEIPTNLPETITE---IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS 69
Query: 394 SLPLDLGTWVGLTELN---LGTNQISKLSEDI 422
L D + GL LN L N+I++L + +
Sbjct: 70 ELAPD--AFQGLRSLNSLVLYGNKITELPKSL 99
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 27/114 (23%)
Query: 442 PSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPR----------- 489
P + +KL+ +DL N++ L P+ L+ L L+L N++ LP+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 490 --------------AIGHLTNLSYLSVGENNLQSIPE-EIGTLENLHTLYLNDN 528
A L NL+ LS+ +N LQ+I + L + T++L N
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRI-KTVHPDIQYLSNLSMLSMRDNKIR 229
QL+ LDL L LP + L LK L L N + +L+ L +R N ++
Sbjct: 276 QLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN-VK 334
Query: 230 ELPPELG---ELKNLVTLDLAHNHLEE---LPKEIGNCTMLVTLDLQHNE 273
+L +G +L NL TLDL+HN +E ++ N + L TL+L HNE
Sbjct: 335 KLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE 384
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 135 KLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNKLNELPMVVY-KL 192
LAS+P+ I T + L L N +T L P +L QL L+L N+L LP+ V+ KL
Sbjct: 30 SLASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKL 87
Query: 193 TSLKILYLRFNRIKTV 208
T L L L N++K++
Sbjct: 88 TKLTHLALHINQLKSI 103
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
L+ N+ TA P G + T + + NQ+ IP G+F K+L+ + + +N
Sbjct: 71 LAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL-GT 401
+ P+G PT + ++ NQI K+ G+F L+ +N+ N LT+LP+ +
Sbjct: 30 SLASVPAGIPT---TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDK 86
Query: 402 WVGLTELNLGTNQISKL 418
LT L L NQ+ +
Sbjct: 87 LTKLTHLALHINQLKSI 103
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 342 NKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL 399
N+ T G T + +N NQ+ +P G+F + L+ + + N L S+P+ +
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGV 107
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 7/149 (4%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSL-P 163
+D +T +P ++ + + E+ L N + +P L + L+ N ++ L P
Sbjct: 16 VDCRGKGLTEIPTNLPET--ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 164 DSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPD-IQYLSNLSML 221
D+ L+ L L L NK+ ELP +++ L SL++L L N+I + D Q L NL++L
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLL 133
Query: 222 SMRDNKIRELPP-ELGELKNLVTLDLAHN 249
S+ DNK++ + L+ + T+ LA N
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 335 NNITLSRNK-FTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
NNI R K T P+ P T I E N I IP G FS K L ++++ +N ++
Sbjct: 13 NNIVDCRGKGLTEIPTNLPETITE---IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS 69
Query: 394 SLPLDLGTWVGLTELN---LGTNQISKLSEDI 422
L D + GL LN L N+I++L + +
Sbjct: 70 ELAPD--AFQGLRSLNSLVLYGNKITELPKSL 99
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 27/114 (23%)
Query: 442 PSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPR----------- 489
P + +KL+ +DL N++ L P+ L+ L L+L N++ LP+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 490 --------------AIGHLTNLSYLSVGENNLQSIPE-EIGTLENLHTLYLNDN 528
A L NL+ LS+ +N LQ+I + L + T++L N
Sbjct: 109 LLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 122/309 (39%), Gaps = 66/309 (21%)
Query: 92 EKEFLRCKEENILNLDLSKSSITHLPPSVEKLT----HLEELYLYGNKLASLPSQIGYVT 147
E EF C + + + S+S + VE +T H+ + YL+ + L+++ S + V
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD-LSTVYSLLEKVK 313
Query: 148 NLTCLGLAENSLTSL-PDSLA-NLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRI 205
+T ENS L P S + +L+ L LDL N + E YL+ +
Sbjct: 314 RIT----VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE-------------YLKNSAC 356
Query: 206 KTVHPDIQYLSNLSMLSMRDNKIRELPPELGE----LKNLVTLDLAHNHLEELPKEIGNC 261
K P +Q L + N +R + + GE LKNL +LD++ N +P
Sbjct: 357 KGAWPSLQ------TLVLSQNHLRSMQ-KTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409
Query: 262 TMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXX 321
+ L+L + + + + + L +S N L+S L +
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEV--LDVSNNNLDSFSLFLPR--------------- 452
Query: 322 XXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKN 381
+ + +SRNK P + F + + NQ+ +P GIF R +
Sbjct: 453 ------------LQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTS 498
Query: 382 LSKVNMKDN 390
L K+ + N
Sbjct: 499 LQKIWLHTN 507
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 449 RKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQ 508
+ L+ LD+ N L+S FL LQ L + N+L +LP A L + + N L+
Sbjct: 431 QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLK 486
Query: 509 SIPEEI-GTLENLHTLYLNDN 528
S+P+ I L +L ++L+ N
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTN 507
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 27/195 (13%)
Query: 221 LSMRDNKIRELPPELGE-LKNLVTLDLAHNHLEELPKEIGNCT----MLVTLDLQHNELV 275
+++ ++K+ +P L + LK+L LDL+ N + E + C L TL L+ N L
Sbjct: 315 ITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLA 374
Query: 276 NIP---DMLGNLINLTRLRLSYNRLESVPETLS---KCVHLN-----EFNVEGC------ 318
++ + L L NLT + +S N S+PET K +LN +V GC
Sbjct: 375 SLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLE 434
Query: 319 ---AXXXXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGI 375
+ + +SRNK P V I+ NQ+ +P GI
Sbjct: 435 ILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDASLLPMLLVLKIS--RNQLKSVPDGI 492
Query: 376 FSRAKNLSKVNMKDN 390
F R +L K+ + N
Sbjct: 493 FDRLTSLQKIWLHTN 507
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 447 NLRKLKCLDLEENKL--ESLPNEI--GFLKELQRLILQSNQLVSLPRA---IGHLTNLSY 499
+L+ L+ LDL EN + E L N LQ LIL+ N L SL + + L NL+
Sbjct: 332 HLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTN 391
Query: 500 LSVGENNLQSIPEEIGTLENLHTLYLN 526
+ + +N+ S+PE E + YLN
Sbjct: 392 IDISKNSFHSMPETCQWPEKMK--YLN 416
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 126 LEELYLYGNKLASLPSQ---IGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKL 182
L+ L L N LASL + + NLT + +++NS S+P++ ++++ L+L ++
Sbjct: 363 LQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRI 422
Query: 183 NELPMVVYK------------------LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMR 224
+ + + K L LK LY+ N++ T+ PD L L +L +
Sbjct: 423 HSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTL-PDASLLPMLLVLKIS 481
Query: 225 DNKIRELP 232
N+++ +P
Sbjct: 482 RNQLKSVP 489
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 127/321 (39%), Gaps = 58/321 (18%)
Query: 192 LTSLKILYLRFNRIKTVHPDIQYLS--NLSMLSMRDNKIRELPPEL---GELKNLVTLDL 246
LTSL++L LR N IK + P +L+ +L + NK++ + E + K+ L L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 247 AHNHLEEL------PKEIGN---CTMLVTLDLQHNELVN------IPDMLGNLINLTRLR 291
+ L+++ ++ GN T + TLDL N + G I L
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 292 LSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGG 351
SYN S T K + F +G + LS++K A
Sbjct: 248 NSYNMGSSFGHTNFK--DPDNFTFKG-----------LEASGVKTCDLSKSKIFALLKSV 294
Query: 352 PTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTE-LNL 410
+ FT + + N+I+KI F +L K+N+ N L S+ + + E L+L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 411 GTNQISKLSEDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEI-G 469
N I L + S L LK L L+ N+L+S+P+ I
Sbjct: 355 SYNHIRALGD----------------------QSFLGLPNLKELALDTNQLKSVPDGIFD 392
Query: 470 FLKELQRLILQSNQL-VSLPR 489
L LQ++ L +N S PR
Sbjct: 393 RLTSLQKIWLHTNPWDCSCPR 413
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 122/309 (39%), Gaps = 66/309 (21%)
Query: 92 EKEFLRCKEENILNLDLSKSSITHLPPSVEKLT----HLEELYLYGNKLASLPSQIGYVT 147
E EF C + + + S+S + VE +T H+ + YL+ + L+++ S + V
Sbjct: 281 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD-LSTVYSLLEKVK 339
Query: 148 NLTCLGLAENSLTSL-PDSLA-NLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRI 205
+T ENS L P S + +L+ L LDL N + E YL+ +
Sbjct: 340 RIT----VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE-------------YLKNSAC 382
Query: 206 KTVHPDIQYLSNLSMLSMRDNKIRELPPELGE----LKNLVTLDLAHNHLEELPKEIGNC 261
K P +Q L + N +R + + GE LKNL +LD++ N +P
Sbjct: 383 KGAWPSLQ------TLVLSQNHLRSMQ-KTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 435
Query: 262 TMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAXX 321
+ L+L + + + + + L +S N L+S L +
Sbjct: 436 EKMRFLNLSSTGIRVVKTCIPQTLEV--LDVSNNNLDSFSLFLPR--------------- 478
Query: 322 XXXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKN 381
+ + +SRNK P + F + + NQ+ +P GIF R +
Sbjct: 479 ------------LQELYISRNKLKTLPDA--SLFPVLLVMKIASNQLKSVPDGIFDRLTS 524
Query: 382 LSKVNMKDN 390
L K+ + N
Sbjct: 525 LQKIWLHTN 533
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 449 RKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQ 508
+ L+ LD+ N L+S FL LQ L + N+L +LP A L + + N L+
Sbjct: 457 QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKIASNQLK 512
Query: 509 SIPEEI-GTLENLHTLYLNDN 528
S+P+ I L +L ++L+ N
Sbjct: 513 SVPDGIFDRLTSLQKIWLHTN 533
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 123 LTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKL 182
+ EL L L+SLP + +T L + +N+L SLP+ A+L+ L D R + L
Sbjct: 58 INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDNRLSTL 115
Query: 183 NELPMVVY-------KLTSLKILYLRFNRIKTVHPDIQYL----SNLSMLSMRDNKIREL 231
ELP + +LT L L I + + L ++L +LS+R+N++ L
Sbjct: 116 PELPASLKHLDVDNNQLTXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRNNQLTFL 175
Query: 232 PPELGELKNLVTLDLAHNHLEELP 255
PEL E +L LD++ N LE LP
Sbjct: 176 -PELPE--SLEALDVSTNLLESLP 196
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 97 RCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ--IGYVTNLTCLGL 154
+C+ E +D S + +P + + T EL L N+ L + + L +
Sbjct: 8 KCRCEGT-TVDCSNQKLNKIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINF 64
Query: 155 AENSLTSLPD-SLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPD- 211
+ N +T + + + + + L N+L + ++K L SLK L LR NRI V D
Sbjct: 65 SNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS 124
Query: 212 IQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHN 249
LS++ +LS+ DN+I + P L +L TL+L N
Sbjct: 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 447 NLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGE 504
++R L L+L N +E +P+ + L+ L+ + SN+L +PR I G + L L++
Sbjct: 145 DMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLAS 203
Query: 505 NNLQSIPEEI-GTLENLHTLYLNDN 528
N L+S+P+ I L +L ++L+ N
Sbjct: 204 NQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 24/91 (26%)
Query: 215 LSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNE 273
+ NLS L +R N I E+P L +L+NL +++ N L ++P+ I
Sbjct: 146 MRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGI--------------- 189
Query: 274 LVNIPDMLGNLINLTRLRLSYNRLESVPETL 304
G + L +L L+ N+L+SVP+ +
Sbjct: 190 -------FGKMPKLKQLNLASNQLKSVPDGI 213
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 360 SINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
SI F N++ ++P GIF + L ++N+ N L S+P
Sbjct: 174 SIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVP 210
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ +I NK P G + + +N NQ+ +P GIF R +L K+ + N
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 26/132 (19%)
Query: 361 INFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL-GTWVGLTELNLGTNQISKLS 419
F ++ IP + + +NLS + ++ N+ +P L L + G+N++ ++
Sbjct: 128 FRFTTRRLTHIPANLLTDMRNLSHLELRANI-EEMPSHLFDDLENLESIEFGSNKLRQMP 186
Query: 420 EDIQXXXXXXXXXXXXXXXXXXPSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLI 478
I G + KLK L+L N+L+S+P+ I L LQ++
Sbjct: 187 RGI----------------------FGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIW 224
Query: 479 LQSNQL-VSLPR 489
L +N S PR
Sbjct: 225 LHTNPWDCSCPR 236
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 152 LGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD 211
L L+ N++ + SL+ ++ LR+L L N + ++ + +L+ L++ +N+I ++
Sbjct: 54 LALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SG 111
Query: 212 IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLD 245
I+ L NL +L M +NKI GE+ L LD
Sbjct: 112 IEKLVNLRVLYMSNNKI----TNWGEIDKLAALD 141
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 90 NIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNL 149
NIEK EN+ L L ++ I + LEEL++ N++ASL S I + NL
Sbjct: 60 NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNL 118
Query: 150 TCLGLAENSLTSLP--DSLANLQQLRVLDLRHNKL 182
L ++ N +T+ D LA L +L L L N L
Sbjct: 119 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 153
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 152 LGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD 211
L L+ N++ + SL+ ++ LR+L L N + ++ + +L+ L++ +N+I ++
Sbjct: 53 LALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SG 110
Query: 212 IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLD 245
I+ L NL +L M +NKI GE+ L LD
Sbjct: 111 IEKLVNLRVLYMSNNKI----TNWGEIDKLAALD 140
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 90 NIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNL 149
NIEK EN+ L L ++ I + LEEL++ N++ASL S I + NL
Sbjct: 59 NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNL 117
Query: 150 TCLGLAENSLTSLP--DSLANLQQLRVLDLRHNKL 182
L ++ N +T+ D LA L +L L L N L
Sbjct: 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 165 SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPD----IQYLSNLS 219
S +N +L+ LDL ++ + + L L L L N I++ P + L NL
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 220 MLSMRDNKIRELPPELGELKNLVTLDLAHN--HLEELPKEIGNCTMLVTLDLQHNELVNI 277
+ + + P +G+L L L++AHN H +LP N T LV +DL +N + I
Sbjct: 111 AVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 442 PSSIGNLRKLKCLDLEENKLESLPN-EIGFLKELQRLILQSNQLVS--LPRAIGHLTNLS 498
P S L L+ L E KL SL + IG L L++L + N + S LP +LTNL
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 499 YLSVGENNLQSI 510
++ + N +Q+I
Sbjct: 157 HVDLSYNYIQTI 168
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 26/264 (9%)
Query: 172 LRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV-HPDIQYLSNLSMLSMRDNKIRE 230
L+ LDL L+ELP + L++LK L L N+ + + +L+ LS++ N R
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR- 338
Query: 231 LPPELG-----ELKNLVTLDLAHNHLEE---LPKEIGNCTMLVTLDLQHNELVNI-PDML 281
ELG L+NL LDL+H+ +E ++ N + L +L+L +NE +++ +
Sbjct: 339 --LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 282 GNLINLTRLRLSYNRLESVPETLS--KCVH-LNEFNVEGCAXXXXXXXXXXXXXXINNIT 338
L L L++ RL+ V + S + +H L N+ + ++
Sbjct: 397 KECPQLELLDLAFTRLK-VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455
Query: 339 LSRNKFTAYPSGGPTQFTSVYSIN------FEHNQIDKIPYGIFSRAKNLSKVNMKDNLL 392
L N F P G + S+ ++ + I F+ K ++ V++ N L
Sbjct: 456 LQGNHF---PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Query: 393 TSLPLDLGTWVGLTELNLGTNQIS 416
TS ++ + + LNL +N IS
Sbjct: 513 TSSSIEALSHLKGIYLNLASNHIS 536
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 135/375 (36%), Gaps = 67/375 (17%)
Query: 44 GYFEDMPEKD------NKKCGVDVKKTVTVKHPESNXXXXXXXXXEPIQADLNIEKEFLR 97
G FEDM ++D C + V+ KH NI
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKH-----------------YFFNISSNTFH 275
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGY--VTNLTCLGLA 155
C + LDL+ + ++ LP + L+ L++L L NK +L QI +LT L +
Sbjct: 276 CFS-GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIK 333
Query: 156 ENS--LTSLPDSLANLQQLRVLDLRHNKLNE---LPMVVYKLTSLKILYLRFNRIKTVHP 210
N+ L L NL+ LR LDL H+ + + + L+ L+ L L +N
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE------ 387
Query: 211 DIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHL--EELPKEIGNCTMLVTLD 268
LS++ +E P L LDLA L ++ N +L L+
Sbjct: 388 ---------PLSLKTEAFKECP-------QLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 269 LQHNEL-VNIPDMLGNLINLTRLRLSYNRLE----SVPETLSKCVHLNEFNVEGCAXXXX 323
L H+ L ++ + L L L L N +L L + C
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Query: 324 XXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
+N++ LS N+ T+ + +Y +N N I I +
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550
Query: 384 KVNMKDNLLTSLPLD 398
+N++ N PLD
Sbjct: 551 TINLRQN-----PLD 560
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 451 LKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQS 509
L+ LDL L LP+ + L L++L+L +N+ +L + + + +L++LS+ + N +
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI-KGNTKR 338
Query: 510 IPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDN 551
+ G LENL L D L++ E + C NLQ+ +L +
Sbjct: 339 LELGTGCLENLENLRELD---LSHDDIETSDCCNLQLRNLSH 377
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 165 SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPD----IQYLSNLS 219
S +N +L+ LDL ++ + + L L L L N I++ P + L NL
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 220 MLSMRDNKIRELPPELGELKNLVTLDLAHN--HLEELPKEIGNCTMLVTLDLQHNELVNI 277
+ + + P +G+L L L++AHN H +LP N T LV +DL +N + I
Sbjct: 106 AVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 442 PSSIGNLRKLKCLDLEENKLESLPN-EIGFLKELQRLILQSNQLVS--LPRAIGHLTNLS 498
P S L L+ L E KL SL + IG L L++L + N + S LP +LTNL
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 499 YLSVGENNLQSI 510
++ + N +Q+I
Sbjct: 152 HVDLSYNYIQTI 163
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 241 LVT-LDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLE- 298
LVT LDL+HN L LP + L L N L N+ D + NL L L L NRL+
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQ 522
Query: 299 -SVPETLSKCVHLNEFNVEG 317
+ + L C L N++G
Sbjct: 523 SAAIQPLVSCPRLVLLNLQG 542
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 241 LVT-LDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLE- 298
LVT LDL+HN L LP + L L N L N+ D + NL L L L NRL+
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQ 522
Query: 299 -SVPETLSKCVHLNEFNVEG 317
+ + L C L N++G
Sbjct: 523 SAAIQPLVSCPRLVLLNLQG 542
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 25/215 (11%)
Query: 125 HLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLN 183
+++EL L GN L+ + + + T L L L+ N L D L +L LR LDL +N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ 93
Query: 184 ELPMVVYKLTSLKILYLRFNRIKTVHPDIQ---YLSNLSMLSMRD------NKIRELPPE 234
EL +V + +L +R+ + YL+N + +RD ++++ L +
Sbjct: 94 EL-LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 235 LGELKN------------LVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLG 282
L E+ L L+L +N + ++ ++ L TLDL N+L +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQ 211
Query: 283 NLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEG 317
+ +T + L N+L + + L +L F++ G
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 129 LYLYGNKLASLP-------SQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNK 181
+YL NK+ L S++ Y+ L L E + + A+ L L+L++N
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLD----LKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 182 LNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNL 241
+ ++ V LK L L N++ + P+ Q + ++ +S+R+NK+ + L +NL
Sbjct: 181 IYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239
Query: 242 VTLDLAHN 249
DL N
Sbjct: 240 EHFDLRGN 247
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 124/316 (39%), Gaps = 37/316 (11%)
Query: 106 LDLSKSSITHLPPSVEK-LTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
++L K + L S + T ++EL L L LPS I + +L L L NS L
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQ 317
Query: 165 -SLANLQQLRVLDLRHN--KLNELPMVVYKLTSLKILYLRFNRIKTVH---------PDI 212
+ A+ LR L ++ N KL+ + KL +L+ L L + I+ +
Sbjct: 318 INAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHL 377
Query: 213 QYLSNLSM---LSMRDNKIRELPPELGELKNLVTLDLAHNHLE-ELPKE-IGNCTMLVTL 267
QYL NLS L + D +E P L LD+A HL + P N +L L
Sbjct: 378 QYL-NLSYNEPLGLEDQAFKECP-------QLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 268 DLQHNEL-VNIPDMLGNLINLTRLRLSYNRLE--SVPET--LSKCVHLNEFNVEGCAXXX 322
+L H L + +L L +L L L N + S+ +T L L + C
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLS 489
Query: 323 XXXXXXXXXXXINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNL 382
+N++ LS N T + +Y +N N I IP +
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQQ 548
Query: 383 SKVNMKDNLLTSLPLD 398
S +N+ N PLD
Sbjct: 549 SIINLSHN-----PLD 559
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 31/153 (20%)
Query: 145 YVTNLTCLGLAENSLTSL-----------PDSLANLQQLRVLDLRHNKLNELPMVVYKLT 193
Y+T+ T GL + S+ S+ + +++ LDL LN LP + +
Sbjct: 241 YLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMN 300
Query: 194 SLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD----NKIRELPPELG-----ELKNLVTL 244
SLK L L N + ++ S S+RD +R+L +LG +L+NL L
Sbjct: 301 SLKKLVLNANSFD----QLCQINAASFPSLRDLYIKGNMRKL--DLGTRCLEKLENLQKL 354
Query: 245 DLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI 277
DL+H+ +E +C L +L+H + +N+
Sbjct: 355 DLSHSDIEA-----SDCCNLQLKNLRHLQYLNL 382
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 102 NILNLDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLPSQIGY-VTNLTCLGLAENSL 159
+++ L+L ++ +T + P + E +H++EL L NK+ + +++ + L L L +N +
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 160 TS-LPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNL 218
+ +P S +L L L+L N N + + L+ L + P
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS------- 167
Query: 219 SMLSMRDNKIRELP 232
+RD +I++LP
Sbjct: 168 ---KVRDVQIKDLP 178
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 110/276 (39%), Gaps = 72/276 (26%)
Query: 88 DLNIEK--EFLRCKEENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIG 144
DL IE+ + I L + ++I +LPP V + + L L L N L+SLP I
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143
Query: 145 YVT-NLTCLGLAENSLTSLPD-------SLANLQ-------------------------- 170
+ T LT L ++ N+L + D SL NLQ
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 203
Query: 171 --------QLRVLDLRHNKLNEL--PMVVYKLTSLKILY-------------------LR 201
+ LD HN +N + P+ V +LT LK+ + L
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262
Query: 202 FNRIKTV--HPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIG 259
+N ++ + HP ++ + L L + +N++ L + L LDL+HNHL + +
Sbjct: 263 YNELEKIMYHPFVK-MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP 321
Query: 260 NCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYN 295
L L L HN +V + L L L LS+N
Sbjct: 322 QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 477 LILQSNQLVSLPRAIGHLT-NLSYLSVGENNLQSIPEE 513
L+L+ N L SLPR I H T L+ LS+ NNL+ I ++
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 33/225 (14%)
Query: 192 LTSLKILYLRFNRIKTVHPDIQYLS--NLSMLSMRDNKIRELPPEL---GELKNLVTLDL 246
LTSL++L LR N IK + P +L+ +L + NK++ + E + K+ L L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 247 AHNHLEEL------PKEIGN---CTMLVTLDLQHNELVN------IPDMLGNLINLTRLR 291
+ L+++ ++ GN T + TLDL N + G I L
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 292 LSYNRLESVPETLSKCVHLNEFNVEGCAXXXXXXXXXXXXXXINNITLSRNKFTAYPSGG 351
SYN S T K + F +G + LS++K A
Sbjct: 248 NSYNMGSSFGHTNFK--DPDNFTFKG-----------LEASGVKTCDLSKSKIFALLKSV 294
Query: 352 PTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ FT + + N+I+KI F +L ++ + N L S+P
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVP 339
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 111/279 (39%), Gaps = 72/279 (25%)
Query: 88 DLNIEK--EFLRCKEENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIG 144
DL IE+ + I L + ++I +LPP V + + L L L N L+SLP I
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137
Query: 145 YVT-NLTCLGLAENSLTSLPD-------SLANLQ-------------------------- 170
+ T LT L ++ N+L + D SL NLQ
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 197
Query: 171 --------QLRVLDLRHNKLNEL--PMVVYKLTSLKILY-------------------LR 201
+ LD HN +N + P+ V +LT LK+ + L
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDTAWLLNYPGLVEVDLS 256
Query: 202 FNRIKTV--HPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIG 259
+N ++ + HP ++ + L L + +N++ L + L LDL+HNHL + +
Sbjct: 257 YNELEKIMYHPFVK-MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP 315
Query: 260 NCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLE 298
L L L HN +V + L L L LS+N +
Sbjct: 316 QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 474 LQRLILQSNQLVSLPRAIGHLT-NLSYLSVGENNLQSIPEE 513
L L+L+ N L SLPR I H T L+ LS+ NNL+ I ++
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 33/218 (15%)
Query: 126 LEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNE 184
++EL L GN L+ + + + T L L L+ N L D L +L LR LDL +N + E
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE 94
Query: 185 LPMVVYKLTSLKILYLRFNRIKTV-------HPDIQYLSNLSMLSMRD------NKIREL 231
L + S++ L+ N I V +I YL+N + +RD ++++ L
Sbjct: 95 LLVG----PSIETLHAANNNISRVSCSRGQGKKNI-YLANNKITMLRDLDEGCRSRVQYL 149
Query: 232 PPELGELKN------------LVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD 279
+L E+ L L+L +N + ++ ++ L TLDL N+L +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGP 208
Query: 280 MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEG 317
+ +T + L N+L + + L +L F++ G
Sbjct: 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 129 LYLYGNKLASLP-------SQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNK 181
+YL NK+ L S++ Y+ L L E + + A+ L L+L++N
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLD----LKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 182 LNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNL 241
+ ++ V LK L L N++ + P+ Q + ++ +S+R+NK+ + L +NL
Sbjct: 181 IYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239
Query: 242 VTLDLAHN 249
DL N
Sbjct: 240 EHFDLRGN 247
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 119/296 (40%), Gaps = 37/296 (12%)
Query: 109 SKSSITHLPPSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP-DSL 166
S S+ +P + + ++ L L N++ + S + NL L L N + ++ DS
Sbjct: 39 SSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 167 ANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD 225
++L L LDL +N L+ L +K L+SL L L N KT+ + S+L+ L +
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQIL- 154
Query: 226 NKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI-PDMLGNL 284
+G + + K+ T L L++ ++L + P L ++
Sbjct: 155 --------RVGNMDTFTKIQ---------RKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 285 INLTRLRLSYNR----LESVPETLS--KCVHLNEFNVEGCAXXXXXXXXXXXXXXINNIT 338
N++ L L + LE + S +C+ L + +++ I T
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD--TFHFSELSTGETNSLIKKFT 255
Query: 339 LSRNKFTAYPSGGPT----QFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
K T Q + + + F NQ+ +P GIF R +L K+ + N
Sbjct: 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 205 IKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTML 264
IK+V IQYL NL+ L++ +N+I ++ P + L N+ L L N L ++ K + N L
Sbjct: 56 IKSVQ-GIQYLPNLTSLNLSNNQITDISP-IQYLPNVTKLFLNGNKLTDI-KPLANLKNL 112
Query: 265 VTLDLQHNEL 274
L L N++
Sbjct: 113 GWLFLDENKV 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,890,791
Number of Sequences: 62578
Number of extensions: 551953
Number of successful extensions: 2179
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 597
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)