Query psy10956
Match_columns 582
No_of_seqs 445 out of 4035
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 22:47:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.7E-59 3E-63 515.4 40.0 531 23-559 8-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-51 7.2E-56 456.1 35.8 448 102-553 179-738 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.4E-48 4.8E-53 423.8 44.3 454 101-555 33-560 (606)
4 4ecn_A Leucine-rich repeat pro 100.0 8.3E-50 2.8E-54 440.2 31.3 457 24-532 266-841 (876)
5 3t6q_A CD180 antigen; protein- 100.0 1.2E-47 4.2E-52 416.4 42.9 466 103-572 14-553 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-48 1E-52 421.3 37.0 453 101-560 32-564 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-47 1.9E-51 416.7 47.2 471 101-571 49-614 (680)
8 4eco_A Uncharacterized protein 100.0 2E-49 6.8E-54 430.4 26.2 453 26-531 29-600 (636)
9 1ziw_A TOLL-like receptor 3; i 100.0 8.6E-47 2.9E-51 415.2 45.3 463 94-558 68-626 (680)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-47 7.1E-52 414.6 36.9 428 101-535 56-562 (606)
11 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-45 8.6E-50 393.5 38.3 452 101-558 26-514 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-45 5.7E-50 412.9 36.1 447 101-555 24-560 (844)
13 4eco_A Uncharacterized protein 100.0 1.6E-45 5.6E-50 399.7 33.4 394 48-484 68-599 (636)
14 2z63_A TOLL-like receptor 4, v 100.0 5.3E-45 1.8E-49 392.9 37.2 452 101-559 28-536 (570)
15 4ecn_A Leucine-rich repeat pro 100.0 6.1E-45 2.1E-49 401.5 32.2 420 53-508 315-840 (876)
16 2z63_A TOLL-like receptor 4, v 100.0 2E-44 7E-49 388.3 34.3 430 101-536 52-536 (570)
17 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-44 9.8E-49 402.9 32.6 451 104-563 7-547 (844)
18 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-44 2E-48 380.1 30.8 444 104-558 3-485 (520)
19 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-43 5E-48 379.8 27.7 429 101-535 50-514 (549)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-41 5.4E-46 361.3 25.8 425 101-535 21-485 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.9E-41 2E-45 360.0 30.2 445 102-559 32-515 (562)
22 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-39 4.9E-44 355.1 39.9 449 101-555 52-580 (635)
23 1jl5_A Outer protein YOPM; leu 100.0 1.1E-40 3.7E-45 346.3 28.4 402 101-555 11-429 (454)
24 1jl5_A Outer protein YOPM; leu 100.0 9.9E-41 3.4E-45 346.6 27.7 388 122-556 9-410 (454)
25 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-38 8.5E-43 345.3 36.6 459 104-571 34-572 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-38 5.5E-43 341.0 29.7 425 101-535 52-514 (562)
27 1o6v_A Internalin A; bacterial 100.0 9E-37 3.1E-41 319.6 35.5 345 101-487 46-390 (466)
28 1o6v_A Internalin A; bacterial 100.0 1.5E-36 5.2E-41 317.9 36.9 348 62-467 46-393 (466)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-36 5.9E-41 315.0 26.2 357 117-538 35-394 (457)
30 3bz5_A Internalin-J, INLJ; leu 100.0 6.3E-36 2.2E-40 310.7 29.9 349 101-514 42-394 (457)
31 3v47_A TOLL-like receptor 5B a 100.0 4.3E-35 1.5E-39 306.4 32.3 378 149-555 12-408 (455)
32 3v47_A TOLL-like receptor 5B a 100.0 8.3E-35 2.9E-39 304.2 30.5 364 105-485 14-408 (455)
33 4fmz_A Internalin; leucine ric 100.0 2.1E-33 7.3E-38 282.6 32.8 302 101-439 44-346 (347)
34 4fmz_A Internalin; leucine ric 100.0 4.4E-33 1.5E-37 280.3 31.7 306 120-462 40-346 (347)
35 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-34 4.2E-39 286.6 18.3 286 23-343 2-302 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 2.5E-32 8.6E-37 287.1 30.2 312 103-416 13-333 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 2.2E-32 7.6E-37 279.7 28.0 304 215-555 44-352 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 3.6E-32 1.2E-36 278.1 28.2 304 191-508 43-352 (390)
39 2id5_A Lingo-1, leucine rich r 100.0 1.6E-31 5.4E-36 281.0 31.0 312 196-532 14-334 (477)
40 4fcg_A Uncharacterized protein 100.0 6.7E-34 2.3E-38 283.0 10.7 275 23-321 23-314 (328)
41 3oja_B Anopheles plasmodium-re 100.0 2.3E-31 7.8E-36 287.0 28.0 307 214-533 49-360 (597)
42 3oja_B Anopheles plasmodium-re 100.0 4.9E-31 1.7E-35 284.4 28.5 304 191-508 49-358 (597)
43 1xku_A Decorin; proteoglycan, 100.0 9.4E-30 3.2E-34 254.0 29.3 282 102-390 32-329 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-29 4.7E-34 252.9 26.8 281 102-390 34-330 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-29 3.9E-34 253.6 25.3 282 240-553 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 6.5E-29 2.2E-33 247.9 29.8 283 240-553 32-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-32 1.1E-36 285.0 0.6 368 102-508 4-440 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 4.9E-31 1.7E-35 276.1 5.5 245 101-345 28-326 (461)
49 1ogq_A PGIP-2, polygalacturona 100.0 6.9E-29 2.4E-33 245.3 17.1 257 48-319 32-302 (313)
50 3ogk_B Coronatine-insensitive 100.0 8.8E-31 3E-35 283.2 3.2 373 122-508 110-526 (592)
51 3ogk_B Coronatine-insensitive 100.0 2.5E-30 8.5E-35 279.6 4.7 387 100-505 111-548 (592)
52 3g06_A SSPH2 (leucine-rich rep 100.0 1E-26 3.4E-31 248.5 30.9 265 94-416 33-297 (622)
53 3g06_A SSPH2 (leucine-rich rep 100.0 9E-27 3.1E-31 248.9 29.8 265 239-538 40-304 (622)
54 4fcg_A Uncharacterized protein 99.9 5E-27 1.7E-31 233.3 20.1 225 122-346 79-315 (328)
55 2z66_A Variable lymphocyte rec 99.9 1.7E-26 5.9E-31 227.8 22.6 218 104-323 10-238 (306)
56 2z66_A Variable lymphocyte rec 99.9 3.8E-26 1.3E-30 225.3 22.3 242 126-369 9-261 (306)
57 2z80_A TOLL-like receptor 2, v 99.9 4.2E-26 1.4E-30 229.7 22.7 269 197-485 35-314 (353)
58 2p1m_B Transport inhibitor res 99.9 2.9E-29 9.9E-34 271.4 -2.3 150 378-528 370-541 (594)
59 2z80_A TOLL-like receptor 2, v 99.9 3.4E-26 1.2E-30 230.4 18.6 266 288-556 34-315 (353)
60 2p1m_B Transport inhibitor res 99.9 1.1E-28 3.9E-33 266.7 -2.6 405 101-507 66-543 (594)
61 3zyj_A Leucine-rich repeat-con 99.9 7.6E-25 2.6E-29 227.3 25.7 240 103-345 45-292 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 9.6E-25 3.3E-29 227.3 25.6 240 103-345 56-303 (452)
63 3zyj_A Leucine-rich repeat-con 99.9 2.8E-24 9.7E-29 223.0 26.7 243 286-531 44-292 (440)
64 1ozn_A Reticulon 4 receptor; N 99.9 3E-25 1E-29 216.4 17.2 218 289-508 15-238 (285)
65 3zyi_A Leucine-rich repeat-con 99.9 4.7E-24 1.6E-28 222.1 26.0 243 263-508 55-303 (452)
66 1ozn_A Reticulon 4 receptor; N 99.9 9.4E-25 3.2E-29 212.9 19.3 217 243-461 15-237 (285)
67 1wwl_A Monocyte differentiatio 99.9 2.5E-26 8.5E-31 227.0 7.3 238 101-345 43-309 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-26 9.4E-31 227.2 6.0 253 264-527 12-271 (317)
69 3o53_A Protein LRIM1, AGAP0063 99.9 3E-25 1E-29 219.8 12.0 254 287-574 12-270 (317)
70 1wwl_A Monocyte differentiatio 99.9 1.2E-25 4.2E-30 222.0 8.2 243 120-370 39-310 (312)
71 3oja_A Leucine-rich immune mol 99.9 2.8E-24 9.7E-29 225.0 11.4 240 276-526 21-270 (487)
72 1h6u_A Internalin H; cell adhe 99.9 2E-23 6.7E-28 205.5 15.5 210 107-325 25-234 (308)
73 3oja_A Leucine-rich immune mol 99.9 6.6E-24 2.2E-28 222.3 11.7 231 240-479 35-269 (487)
74 1h6u_A Internalin H; cell adhe 99.9 1.4E-22 5E-27 199.3 20.6 196 101-304 41-236 (308)
75 2o6q_A Variable lymphocyte rec 99.9 2.6E-22 8.8E-27 193.9 21.9 194 103-298 18-218 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 1.8E-22 6E-27 195.8 20.0 213 105-319 11-235 (276)
77 2z62_A TOLL-like receptor 4, v 99.9 2.1E-22 7.1E-27 195.3 20.4 218 127-346 10-238 (276)
78 1p9a_G Platelet glycoprotein I 99.9 5.6E-22 1.9E-26 193.2 21.5 199 120-321 6-208 (290)
79 1p9a_G Platelet glycoprotein I 99.9 1.6E-21 5.4E-26 190.0 22.0 202 212-416 6-208 (290)
80 2xwt_C Thyrotropin receptor; s 99.9 1.5E-21 5.1E-26 184.9 17.1 199 113-317 23-235 (239)
81 2o6q_A Variable lymphocyte rec 99.9 1.5E-20 5.1E-25 181.5 23.2 158 304-461 57-217 (270)
82 2ca6_A RAN GTPase-activating p 99.9 5.3E-23 1.8E-27 209.7 5.4 220 102-321 33-316 (386)
83 2ast_B S-phase kinase-associat 99.9 2E-22 7E-27 201.4 8.2 243 103-351 49-312 (336)
84 2xwt_C Thyrotropin receptor; s 99.9 5.1E-21 1.7E-25 181.3 15.7 192 217-412 32-235 (239)
85 2ca6_A RAN GTPase-activating p 99.9 3E-22 1E-26 204.1 7.3 240 109-348 17-319 (386)
86 4glp_A Monocyte differentiatio 99.9 1.7E-21 5.7E-26 192.2 11.4 152 191-346 143-308 (310)
87 3rfs_A Internalin B, repeat mo 99.8 4.1E-21 1.4E-25 185.6 13.7 132 214-347 39-172 (272)
88 3cvr_A Invasion plasmid antige 99.8 2.7E-20 9.4E-25 196.4 21.0 190 97-306 55-252 (571)
89 3rfs_A Internalin B, repeat mo 99.8 1E-20 3.4E-25 182.8 15.8 178 235-414 37-216 (272)
90 4glp_A Monocyte differentiatio 99.8 4.3E-21 1.5E-25 189.2 13.5 219 101-322 64-308 (310)
91 2ast_B S-phase kinase-associat 99.8 1.9E-21 6.4E-26 194.4 7.2 216 125-342 48-282 (336)
92 3goz_A Leucine-rich repeat-con 99.8 8.4E-22 2.9E-26 198.8 4.5 243 266-508 2-297 (362)
93 1h6t_A Internalin B; cell adhe 99.8 1.7E-20 5.7E-25 182.9 13.0 190 103-300 26-215 (291)
94 3goz_A Leucine-rich repeat-con 99.8 3E-21 1E-25 194.8 7.1 244 290-533 3-299 (362)
95 3cvr_A Invasion plasmid antige 99.8 9.1E-20 3.1E-24 192.4 18.3 186 124-329 59-251 (571)
96 1h6t_A Internalin B; cell adhe 99.8 2.7E-19 9.3E-24 174.3 16.5 171 101-278 46-216 (291)
97 3m19_A Variable lymphocyte rec 99.8 1E-18 3.6E-23 166.5 19.6 172 102-275 15-192 (251)
98 4ay9_X Follicle-stimulating ho 99.8 5.1E-19 1.7E-23 177.4 18.1 233 244-481 14-255 (350)
99 4ay9_X Follicle-stimulating ho 99.8 8.4E-19 2.9E-23 175.9 17.8 236 288-528 12-256 (350)
100 3m19_A Variable lymphocyte rec 99.8 3.2E-18 1.1E-22 163.1 20.1 174 287-462 16-192 (251)
101 1m9s_A Internalin B; cell inva 99.8 3.1E-19 1.1E-23 190.5 12.6 190 103-300 23-212 (605)
102 1xeu_A Internalin C; cellular 99.8 1.8E-19 6E-24 172.8 9.0 169 101-300 19-187 (263)
103 1m9s_A Internalin B; cell inva 99.8 1.7E-18 5.7E-23 184.9 14.7 195 124-326 21-215 (605)
104 1xeu_A Internalin C; cellular 99.8 7.1E-19 2.4E-23 168.6 9.6 171 148-326 20-190 (263)
105 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.7E-22 151.8 14.4 146 102-251 45-193 (197)
106 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.8E-22 152.4 12.9 104 121-226 41-146 (197)
107 1dce_A Protein (RAB geranylger 99.7 6.3E-20 2.1E-24 194.7 -4.0 121 217-339 442-567 (567)
108 1dce_A Protein (RAB geranylger 99.7 2.2E-19 7.5E-24 190.5 -2.9 121 240-362 442-566 (567)
109 2o6s_A Variable lymphocyte rec 99.7 9.5E-17 3.2E-21 148.3 14.6 113 377-495 73-189 (208)
110 3e6j_A Variable lymphocyte rec 99.7 2E-16 6.8E-21 148.2 16.9 146 103-250 21-170 (229)
111 2o6s_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 147.8 14.9 102 243-346 11-114 (208)
112 2v9t_B SLIT homolog 2 protein 99.7 1.7E-16 6E-21 147.6 15.9 146 104-251 14-164 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.8E-16 6.2E-21 147.5 16.0 147 104-252 14-166 (220)
114 3e6j_A Variable lymphocyte rec 99.7 3.1E-16 1E-20 147.0 17.1 150 382-533 21-174 (229)
115 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.7E-21 161.1 14.4 170 104-275 21-202 (361)
116 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-16 9E-21 146.4 15.3 149 383-533 14-168 (220)
117 4b8c_D Glucose-repressible alc 99.7 3.9E-18 1.3E-22 186.7 2.6 263 19-298 124-404 (727)
118 2v9t_B SLIT homolog 2 protein 99.7 5.8E-16 2E-20 144.0 15.7 126 220-347 15-143 (220)
119 3sb4_A Hypothetical leucine ri 99.7 1.3E-16 4.5E-21 158.4 9.8 215 307-524 100-327 (329)
120 2ell_A Acidic leucine-rich nuc 99.7 2.9E-16 9.9E-21 139.6 11.0 131 101-232 24-163 (168)
121 3sb4_A Hypothetical leucine ri 99.7 9.5E-17 3.3E-21 159.4 8.7 280 262-572 25-327 (329)
122 2ell_A Acidic leucine-rich nuc 99.7 4.4E-16 1.5E-20 138.5 11.3 135 122-257 22-165 (168)
123 2xot_A Amphoterin-induced prot 99.7 6.9E-16 2.4E-20 155.2 14.0 173 265-439 21-202 (361)
124 4b8c_D Glucose-repressible alc 99.6 5E-17 1.7E-21 177.9 5.8 157 101-275 173-329 (727)
125 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 132.8 10.9 123 101-224 17-148 (149)
126 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 9E-20 130.5 10.3 125 122-247 15-148 (149)
127 4fs7_A Uncharacterized protein 99.6 1.3E-13 4.5E-18 140.3 24.1 325 114-476 60-392 (394)
128 4fdw_A Leucine rich hypothetic 99.6 3.9E-14 1.3E-18 143.7 19.7 254 285-551 113-379 (401)
129 1a9n_A U2A', U2A'; complex (nu 99.6 3.2E-15 1.1E-19 133.9 9.5 132 120-252 15-153 (176)
130 1w8a_A SLIT protein; signaling 99.6 1.9E-14 6.3E-19 130.8 13.7 125 406-532 11-140 (192)
131 1w8a_A SLIT protein; signaling 99.6 3.1E-14 1E-18 129.4 13.4 125 103-229 10-139 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.6 8.1E-15 2.8E-19 131.3 9.0 129 169-298 18-153 (176)
133 4fdw_A Leucine rich hypothetic 99.5 5.4E-13 1.8E-17 135.3 23.3 261 147-437 113-381 (401)
134 2wfh_A SLIT homolog 2 protein 99.5 1.1E-13 3.6E-18 125.7 14.3 125 406-532 13-140 (193)
135 4fs7_A Uncharacterized protein 99.5 9E-13 3.1E-17 134.1 22.5 297 101-411 71-374 (394)
136 1ds9_A Outer arm dynein; leuci 99.5 7.5E-16 2.6E-20 140.9 -3.1 125 103-229 25-153 (198)
137 2wfh_A SLIT homolog 2 protein 99.5 4.3E-13 1.5E-17 121.7 14.2 125 242-368 13-138 (193)
138 1ds9_A Outer arm dynein; leuci 99.5 4.1E-16 1.4E-20 142.7 -6.6 115 136-252 37-153 (198)
139 2o6r_A Variable lymphocyte rec 99.5 1.1E-12 3.7E-17 117.5 15.5 125 429-555 10-137 (177)
140 4gt6_A Cell surface protein; l 99.4 2.7E-11 9.4E-16 123.1 23.5 321 119-458 58-387 (394)
141 4gt6_A Cell surface protein; l 99.4 3.1E-11 1.1E-15 122.7 23.7 280 102-389 65-366 (394)
142 2o6r_A Variable lymphocyte rec 99.4 4.7E-12 1.6E-16 113.3 15.2 80 265-346 10-90 (177)
143 2r9u_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 111.4 12.1 102 104-207 15-119 (174)
144 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 109.6 12.0 102 103-206 11-115 (170)
145 2r9u_A Variable lymphocyte rec 99.3 2.5E-11 8.5E-16 108.0 12.9 102 429-532 15-119 (174)
146 3g39_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 106.9 13.0 104 428-533 11-117 (170)
147 4h09_A Hypothetical leucine ri 99.2 1.4E-09 4.9E-14 109.8 24.5 74 101-179 46-122 (379)
148 3un9_A NLR family member X1; l 99.2 1.3E-12 4.4E-17 131.2 1.4 177 379-555 71-283 (372)
149 4h09_A Hypothetical leucine ri 99.2 3E-09 1E-13 107.5 24.9 80 120-203 42-123 (379)
150 3un9_A NLR family member X1; l 99.2 6.6E-12 2.3E-16 126.0 3.9 129 170-298 101-252 (372)
151 2ifg_A High affinity nerve gro 99.1 5.9E-10 2E-14 111.2 11.2 101 105-206 12-116 (347)
152 2ifg_A High affinity nerve gro 99.0 1.9E-09 6.4E-14 107.5 11.1 102 127-229 11-116 (347)
153 2ra8_A Uncharacterized protein 98.8 4.9E-09 1.7E-13 104.2 5.8 63 237-299 250-321 (362)
154 2ra8_A Uncharacterized protein 98.7 1.3E-08 4.3E-13 101.2 5.9 62 260-321 250-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 9E-09 3.1E-13 92.3 4.1 64 492-555 90-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 2E-08 7E-13 89.9 4.8 13 517-529 150-162 (185)
157 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.1E-12 87.6 3.0 62 144-206 167-233 (267)
158 3rw6_A Nuclear RNA export fact 98.0 5.6E-06 1.9E-10 77.8 6.5 78 121-199 167-257 (267)
159 3e4g_A ATP synthase subunit S, 97.9 3.3E-06 1.1E-10 73.6 1.9 81 472-553 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1.8E-05 6E-10 68.9 5.2 78 102-180 62-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 2E-05 6.9E-10 70.0 5.0 64 490-553 93-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 3.9E-05 1.3E-09 68.1 5.3 9 518-526 157-165 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0069 2.4E-07 49.9 6.7 34 149-182 33-67 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.011 3.6E-07 48.8 7.0 56 475-532 11-69 (130)
165 2lz0_A Uncharacterized protein 76.5 5 0.00017 30.7 5.7 45 319-364 7-51 (100)
166 2lz0_A Uncharacterized protein 67.8 6.1 0.00021 30.2 4.3 46 343-389 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.7e-59 Score=515.37 Aligned_cols=531 Identities=25% Similarity=0.337 Sum_probs=301.0
Q ss_pred hHHHHHHHHHHcccccCCCCCCCCCCC------CCCCCcccCCCCCeEEEEEcCCCCCCCC---C--CCCCCC-------
Q psy10956 23 SYREESSTALLNSDSSRSDEYGYFEDM------PEKDNKKCGVDVKKTVTVKHPESNKPKP---T--TKKKEP------- 84 (582)
Q Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~l~~w------~~~~~~~c~~~~~~v~~l~~~~~~~~~~---~--~~~~~~------- 84 (582)
.+.++|++||++||+++.||. .+++| |.|.||.|+ .+||+++++.+..+.+. . ......
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 335679999999999999998 88999 367778887 57999999988765432 0 000000
Q ss_pred -ccccccchHHHhhhhccCccEEEccCCCCC-CCCc--cccCCCCCcEEEccCCCCc-ccChh-----------------
Q psy10956 85 -IQADLNIEKEFLRCKEENILNLDLSKSSIT-HLPP--SVEKLTHLEELYLYGNKLA-SLPSQ----------------- 142 (582)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~l~~L~ls~~~~~-~l~~--~~~~l~~L~~L~l~~~~l~-~l~~~----------------- 142 (582)
......++..+.. ..+|++|+|++|.++ .+|. .++++++|++|++++|.+. .+|..
T Consensus 85 ~~~~~~~l~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 85 SNSHINGSVSGFKC--SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp TTSCEEECCCCCCC--CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred cCCCcCCCchhhcc--CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 0000000001111 123444444444444 2333 3444444444444444333 22221
Q ss_pred -----------c----------------------cCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCC-ccchh
Q psy10956 143 -----------I----------------------GYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLN-ELPMV 188 (582)
Q Consensus 143 -----------~----------------------~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~l~~~ 188 (582)
+ ..+++|++|++++|.++..+..++++++|++|++++|.++ .+|..
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH
Confidence 2 2333444444444444421112555555555555555554 44444
Q ss_pred hhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCc-ccCccccCC-CCccEEeccCccCc-ccCccccCCCCCc
Q psy10956 189 VYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIR-ELPPELGEL-KNLVTLDLAHNHLE-ELPKEIGNCTMLV 265 (582)
Q Consensus 189 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~i~~~l~~l-~~L~~L~l~~n~l~-~l~~~l~~~~~L~ 265 (582)
+..+++|++|++++|.+....+.. .+++|++|++++|.++ .+|..+... ++|++|++++|.++ .+|..++.+++|+
T Consensus 243 l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 555555555555555554222222 4455555555555554 455554443 66666666666665 4555566666666
Q ss_pred EEeCCCCCCC-Ccchh-hcCCCCCcEEEccCCcCC-cCCccccCC---------------------------CCCCEEEe
Q psy10956 266 TLDLQHNELV-NIPDM-LGNLINLTRLRLSYNRLE-SVPETLSKC---------------------------VHLNEFNV 315 (582)
Q Consensus 266 ~L~l~~n~l~-~i~~~-~~~~~~L~~L~l~~n~l~-~~~~~l~~~---------------------------~~L~~L~l 315 (582)
+|++++|.+. .+|.. +..+++|++|++++|.++ .+|..+..+ ++|++|++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 6666666665 45543 556666666666666555 244444333 33444444
Q ss_pred cCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCc-
Q psy10956 316 EGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTS- 394 (582)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~- 394 (582)
++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+++
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 4444442223335555566666666666655555555556666666666666653333445556666666666666663
Q ss_pred ccccccCCCCCCEEECcCCCCC-ccchhhhCCCCCCEEECcCCCCC-ccccccCCCCCCCEEeCCCCCCC-CCccc----
Q psy10956 395 LPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEVLVLSNNLLK-KLPSSIGNLRKLKCLDLEENKLE-SLPNE---- 467 (582)
Q Consensus 395 l~~~~~~~~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~ls~n~l~-~i~~~l~~~~~L~~L~L~~n~l~-~l~~~---- 467 (582)
+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 4556666666666666666666 45666666666666666666666 56666666666777776666554 33322
Q ss_pred ------------------------------------------------------------------ccCCCcCCEEEccC
Q psy10956 468 ------------------------------------------------------------------IGFLKELQRLILQS 481 (582)
Q Consensus 468 ------------------------------------------------------------------l~~~~~L~~L~l~~ 481 (582)
++.+++|++|++++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 22245566677777
Q ss_pred CCCc-cccccccCCCCCCEEECCCCCCC-cCcccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEecCCCCCC-CCc
Q psy10956 482 NQLV-SLPRAIGHLTNLSYLSVGENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS-QIP 558 (582)
Q Consensus 482 n~l~-~i~~~l~~~~~L~~L~ls~n~l~-~i~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~-~i~ 558 (582)
|+++ .+|..++.++.|+.|++++|+++ .+|..++++++|++|+|++|.+.+.+|..+..+++|++|++++|+++ .||
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 7765 66666777777777777777776 56667777777777777777777777777777777777777777766 555
Q ss_pred H
Q psy10956 559 S 559 (582)
Q Consensus 559 ~ 559 (582)
.
T Consensus 722 ~ 722 (768)
T 3rgz_A 722 E 722 (768)
T ss_dssp S
T ss_pred C
Confidence 4
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-51 Score=456.13 Aligned_cols=448 Identities=25% Similarity=0.349 Sum_probs=336.2
Q ss_pred CccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCC-CcchhhhCCCCCCEEeCCCC
Q psy10956 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT-SLPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 102 ~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~L~~n 180 (582)
+|++|++++|.++...+ +..+++|++|++++|.+...++.++.+++|++|++++|.++ .+|..++++++|++|++++|
T Consensus 179 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp TCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 34444444444442221 25666777777777777633333777777777777777776 56667777777777777777
Q ss_pred CCC-ccchhhhccccccEeecccCcCc-ccCccccCC-CCCCEEEccCCcCc-ccCccccCCCCccEEeccCccCc-ccC
Q psy10956 181 KLN-ELPMVVYKLTSLKILYLRFNRIK-TVHPDIQYL-SNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-ELP 255 (582)
Q Consensus 181 ~l~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l-~~L~~L~l~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~-~l~ 255 (582)
.+. .+|.. .+++|++|++++|.+. .+|..+... ++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|
T Consensus 258 ~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC
Confidence 665 33332 4555555555555555 444444332 55555555555555 44445555555555555555554 444
Q ss_pred cc-ccCCCCCcEEeCCCCCCC-Cc-------------------------chhhcC--CCCCcEEEccCCcCCc-CCcccc
Q psy10956 256 KE-IGNCTMLVTLDLQHNELV-NI-------------------------PDMLGN--LINLTRLRLSYNRLES-VPETLS 305 (582)
Q Consensus 256 ~~-l~~~~~L~~L~l~~n~l~-~i-------------------------~~~~~~--~~~L~~L~l~~n~l~~-~~~~l~ 305 (582)
.. ++.+++|++|++++|.+. .+ |..+.. +++|+.|++++|.+++ +|..+.
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 33 444555555555555443 23 333333 5678888888887774 778899
Q ss_pred CCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEE
Q psy10956 306 KCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKV 385 (582)
Q Consensus 306 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L 385 (582)
.+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.......+..+++|+.|
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 99999999999999986666668999999999999999998888888899999999999999996656678899999999
Q ss_pred eccCCcCC-cccccccCCCCCCEEECcCCCCC-ccchhhhCCCCCCEEECcCCCCC-ccccc------------------
Q psy10956 386 NMKDNLLT-SLPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEVLVLSNNLLK-KLPSS------------------ 444 (582)
Q Consensus 386 ~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~ls~n~l~-~i~~~------------------ 444 (582)
++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 99999999 47889999999999999999998 68889999999999999999876 55543
Q ss_pred ----------------------------------------------------cCCCCCCCEEeCCCCCCC-CCcccccCC
Q psy10956 445 ----------------------------------------------------IGNLRKLKCLDLEENKLE-SLPNEIGFL 471 (582)
Q Consensus 445 ----------------------------------------------------l~~~~~L~~L~L~~n~l~-~l~~~l~~~ 471 (582)
+..+++|+.|++++|+++ .+|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 334578999999999999 789999999
Q ss_pred CcCCEEEccCCCCc-cccccccCCCCCCEEECCCCCCC-cCcccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEec
Q psy10956 472 KELQRLILQSNQLV-SLPRAIGHLTNLSYLSVGENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSL 549 (582)
Q Consensus 472 ~~L~~L~l~~n~l~-~i~~~l~~~~~L~~L~ls~n~l~-~i~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 549 (582)
++|+.|++++|+++ .+|..++++++|++||+++|+++ .+|..+..++.|++|++++|++.|.+|.. ..+.++....+
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~ 734 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKF 734 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGG
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHh
Confidence 99999999999998 89999999999999999999998 78999999999999999999999999854 33444555556
Q ss_pred CCCC
Q psy10956 550 DNCP 553 (582)
Q Consensus 550 s~n~ 553 (582)
.+|+
T Consensus 735 ~gN~ 738 (768)
T 3rgz_A 735 LNNP 738 (768)
T ss_dssp CSCT
T ss_pred cCCc
Confidence 6665
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-48 Score=423.80 Aligned_cols=454 Identities=21% Similarity=0.273 Sum_probs=339.8
Q ss_pred cCccEEEccCCCCCCC-CccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHL-PPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L 177 (582)
.++++|++++|.++.+ |..+.++++|++|++++|.+..+ |..|+.+++|++|++++|.++.+ |..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4689999999999977 55799999999999999999954 77899999999999999999854 678999999999999
Q ss_pred CCCCCCcc-chhhhccccccEeecccCcCcccC-ccccCCCCCCEEEccCCcCccc-CccccCCCCcc--EEeccCccCc
Q psy10956 178 RHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLSMLSMRDNKIREL-PPELGELKNLV--TLDLAHNHLE 252 (582)
Q Consensus 178 ~~n~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~i-~~~l~~l~~L~--~L~l~~n~l~ 252 (582)
++|.++.+ +..+.++++|++|++++|.+..++ +.+..+++|++|++++|.++.+ +..++.+++|+ .|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999976 456778999999999999998652 4555699999999999999965 45588889998 8999999888
Q ss_pred ccCccccCCC----------------------------------------------------CCcEEeCCCCCCCCcch-
Q psy10956 253 ELPKEIGNCT----------------------------------------------------MLVTLDLQHNELVNIPD- 279 (582)
Q Consensus 253 ~l~~~l~~~~----------------------------------------------------~L~~L~l~~n~l~~i~~- 279 (582)
.++....... +|++|++++|.+..++.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 6554333333 45666666666665543
Q ss_pred hhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCcc-CCCCCCCCCCcc
Q psy10956 280 MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTA-YPSGGPTQFTSV 358 (582)
Q Consensus 280 ~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L 358 (582)
.+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+++..+..+++|++|++++|.+.+ .+...+..+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 4677777777777777777777777777777777777777776666667777777777777777663 334446677777
Q ss_pred cEEEcCCCCCCCCC--hhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECcCCCCCcc-c-hhhhCCCCCCEEEC
Q psy10956 359 YSINFEHNQIDKIP--YGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQISKL-S-EDIQNLVNLEVLVL 433 (582)
Q Consensus 359 ~~L~l~~~~i~~i~--~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~-~-~~l~~~~~L~~L~l 433 (582)
++|++++|.+..+. ...+..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.. + ..+..+++|++|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 77777777776554 44566777777777777777654 55666777777777777777643 2 23667777777777
Q ss_pred cCCCCCc-cccccCCCCCCCEEeCCCCCCCC--C--cccccCCCcCCEEEccCCCCccc-cccccCCCCCCEEECCCCCC
Q psy10956 434 SNNLLKK-LPSSIGNLRKLKCLDLEENKLES--L--PNEIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNL 507 (582)
Q Consensus 434 s~n~l~~-i~~~l~~~~~L~~L~L~~n~l~~--l--~~~l~~~~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~ls~n~l 507 (582)
++|.++. .+..+..+++|+.|++++|.++. + +..+..+++|++|++++|.++.+ |..+..+++|++|++++|++
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 7777763 35566777777777777777763 1 23466777777777777777754 46677777777777777777
Q ss_pred Cc-CcccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEecCCCCCC
Q psy10956 508 QS-IPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS 555 (582)
Q Consensus 508 ~~-i~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 555 (582)
+. .|..+.+++.| .|++++|.+.+..|..+..+++|+.|++++|+++
T Consensus 513 ~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 64 35667777777 7777777777666666777777777777777776
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.3e-50 Score=440.23 Aligned_cols=457 Identities=19% Similarity=0.255 Sum_probs=278.6
Q ss_pred HHHHHHHHHHcccccCCCCCCCCCCCCCCC----Ccc--cCCCCCe-------EEEEEcCCCCCCCCCCCCCCCcccccc
Q psy10956 24 YREESSTALLNSDSSRSDEYGYFEDMPEKD----NKK--CGVDVKK-------TVTVKHPESNKPKPTTKKKEPIQADLN 90 (582)
Q Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~l~~w~~~~----~~~--c~~~~~~-------v~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
+..+|++||++||+++.+| +|...+ +.. |.|...+ ..+|.|..
T Consensus 266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~------------------- 321 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN------------------- 321 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-------------------
T ss_pred cchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-------------------
Confidence 4567999999999999887 564322 333 8892210 00044432
Q ss_pred chHHHhhhhccCccEEEccCCCCC-CCCccccCCCCCcEEEc-cCCCCc-ccChhc------------------------
Q psy10956 91 IEKEFLRCKEENILNLDLSKSSIT-HLPPSVEKLTHLEELYL-YGNKLA-SLPSQI------------------------ 143 (582)
Q Consensus 91 ~~~~~~~~~~~~l~~L~ls~~~~~-~l~~~~~~l~~L~~L~l-~~~~l~-~l~~~~------------------------ 143 (582)
..+++.|+|+++.+. .+|+.++++++|++|+| ++|.+. ..|...
T Consensus 322 ---------~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l 392 (876)
T 4ecn_A 322 ---------NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392 (876)
T ss_dssp ---------TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHT
T ss_pred ---------CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhh
Confidence 146899999999998 78999999999999999 777654 211110
Q ss_pred ---------------------------cCCCCCCEEEccC--CCCCCcchhhhCCCCCCEEeCCCCCCCc----------
Q psy10956 144 ---------------------------GYVTNLTCLGLAE--NSLTSLPDSLANLQQLRVLDLRHNKLNE---------- 184 (582)
Q Consensus 144 ---------------------------~~l~~L~~L~l~~--n~l~~lp~~l~~l~~L~~L~L~~n~l~~---------- 184 (582)
.....++.+.+.. |.++.+|..++++++|++|+|++|.++.
T Consensus 393 ~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472 (876)
T ss_dssp CCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred ccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccc
Confidence 1111223333322 4555577777777777777777777775
Q ss_pred --------cchhhh--ccccccEeecccCcCc-ccCccccCCCCCCEEEccCCc-Ccc--cCccccCC-------CCccE
Q psy10956 185 --------LPMVVY--KLTSLKILYLRFNRIK-TVHPDIQYLSNLSMLSMRDNK-IRE--LPPELGEL-------KNLVT 243 (582)
Q Consensus 185 --------l~~~~~--~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~n~-l~~--i~~~l~~l-------~~L~~ 243 (582)
+|..++ ++++|++|++++|.+. .+|..++++++|++|++++|. ++. +|..++.+ ++|++
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 666665 6777777777777655 556667777777777777776 553 55544433 37777
Q ss_pred EeccCccCcccCc--cccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCC-CCEEEecCCCC
Q psy10956 244 LDLAHNHLEELPK--EIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVH-LNEFNVEGCAL 320 (582)
Q Consensus 244 L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~-L~~L~l~~~~~ 320 (582)
|++++|.++.+|. .++.+++|++|++++|.+..+| .++.+++|+.|++++|.++.+|..+..+++ |++|++++|.+
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence 7777777777766 6677777777777777777666 666777777777777777766666666666 77777777777
Q ss_pred CCCChhhhcCCC--CCCEEEccCCcCccCCCCC---CC--CCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCC
Q psy10956 321 SSLPDGLLSSLT--SINNITLSRNKFTAYPSGG---PT--QFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393 (582)
Q Consensus 321 ~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~---~~--~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~ 393 (582)
..+|.. +...+ +|+.|++++|.+.+..+.. +. ..++|+.|++++|.+..++...+..+++|+.|++++|.+.
T Consensus 632 ~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 632 KYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp CSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred CcCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 666543 33333 3777777777666533211 11 2336666666666666666666666666666666666666
Q ss_pred cccccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccccC--CCCCCCEEeCCCCCCCCCcccccCC
Q psy10956 394 SLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIG--NLRKLKCLDLEENKLESLPNEIGFL 471 (582)
Q Consensus 394 ~l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~l~--~~~~L~~L~L~~n~l~~l~~~l~~~ 471 (582)
.+|..+.... ...+.++++|+.|++++|.++.+|..+. .+++|+.|+|++|+++.+|..++.+
T Consensus 711 ~ip~~~~~~~---------------~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L 775 (876)
T 4ecn_A 711 SIPENSLKPK---------------DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775 (876)
T ss_dssp CCCTTSSSCT---------------TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC
T ss_pred ccChHHhccc---------------cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcC
Confidence 5554332211 0001122355555555555555555544 5555555555555555555555555
Q ss_pred CcCCEEEccC------CCCc-cccccccCCCCCCEEECCCCCCCcCcccccCCCCCCEEeCCCCCCCC
Q psy10956 472 KELQRLILQS------NQLV-SLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532 (582)
Q Consensus 472 ~~L~~L~l~~------n~l~-~i~~~l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~L~l~~n~~~~ 532 (582)
++|+.|++++ |.+. .+|..+..+++|+.|++++|.++.+|..+. ++|+.|+|++|++..
T Consensus 776 ~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCc
Confidence 5555555544 4433 455555566666666666666655555433 456666666665444
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-47 Score=416.37 Aligned_cols=466 Identities=21% Similarity=0.264 Sum_probs=400.5
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeCCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L~~n 180 (582)
-+.+++++..++.+|..+.. .+++|++++|.++.+ |..++.+++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 45689999999999987653 799999999999966 67899999999999999999955 778999999999999999
Q ss_pred CCCcc-chhhhccccccEeecccCcCccc-CccccCCCCCCEEEccCCcCcccC-ccccCCCCccEEeccCccCccc-Cc
Q psy10956 181 KLNEL-PMVVYKLTSLKILYLRFNRIKTV-HPDIQYLSNLSMLSMRDNKIRELP-PELGELKNLVTLDLAHNHLEEL-PK 256 (582)
Q Consensus 181 ~l~~l-~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~l-~~ 256 (582)
.++.+ |..++++++|++|++++|.+..+ +..++++++|++|++++|.+..++ ..+..+++|++|++++|.++.+ +.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 99855 66788999999999999999976 567899999999999999999653 3445599999999999999966 45
Q ss_pred cccCCCCCc--EEeCCCCCCCCcchhhcCCC-------------------------------------------------
Q psy10956 257 EIGNCTMLV--TLDLQHNELVNIPDMLGNLI------------------------------------------------- 285 (582)
Q Consensus 257 ~l~~~~~L~--~L~l~~n~l~~i~~~~~~~~------------------------------------------------- 285 (582)
.++.+++|+ +|++++|.+..++.......
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 688899999 89999999886543222211
Q ss_pred ---CCcEEEccCCcCCcCCc-cccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEE
Q psy10956 286 ---NLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSI 361 (582)
Q Consensus 286 ---~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 361 (582)
+|+.|++++|.+++++. .+..+++|++|++++|.+..+|.. +..+++|++|++++|.+++..+..+..+++|++|
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 57788888888887654 488899999999999999988876 7889999999999999998877788889999999
Q ss_pred EcCCCCCC-CCChhhhhcCCCCCEEeccCCcCCcc---cccccCCCCCCEEECcCCCCCcc-chhhhCCCCCCEEECcCC
Q psy10956 362 NFEHNQID-KIPYGIFSRAKNLSKVNMKDNLLTSL---PLDLGTWVGLTELNLGTNQISKL-SEDIQNLVNLEVLVLSNN 436 (582)
Q Consensus 362 ~l~~~~i~-~i~~~~~~~~~~L~~L~l~~n~l~~l---~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~ls~n 436 (582)
++++|.+. .++...+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 99999887 77777788999999999999999875 56788999999999999998854 566888999999999999
Q ss_pred CCCcc-c-cccCCCCCCCEEeCCCCCCCC-CcccccCCCcCCEEEccCCCCcc--cc--ccccCCCCCCEEECCCCCCCc
Q psy10956 437 LLKKL-P-SSIGNLRKLKCLDLEENKLES-LPNEIGFLKELQRLILQSNQLVS--LP--RAIGHLTNLSYLSVGENNLQS 509 (582)
Q Consensus 437 ~l~~i-~-~~l~~~~~L~~L~L~~n~l~~-l~~~l~~~~~L~~L~l~~n~l~~--i~--~~l~~~~~L~~L~ls~n~l~~ 509 (582)
.++.. + ..+..+++|+.|++++|.+.. .|..++.+++|++|++++|.+.. ++ ..+..+++|++|++++|.++.
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 98844 3 448899999999999999985 46678899999999999999874 22 568899999999999999996
Q ss_pred C-cccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEecCCCCCCCCcHHhHcCChHHHHHH
Q psy10956 510 I-PEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRY 572 (582)
Q Consensus 510 i-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~i~~~~~~~~~~l~~~~ 572 (582)
+ |..+..+++|++|++++|.+.+..|..+..+++| .|++++|.++.+++..+..+++|+.++
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 5 6788999999999999999998888899999999 999999999988888877777765443
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-48 Score=421.26 Aligned_cols=453 Identities=20% Similarity=0.218 Sum_probs=359.2
Q ss_pred cCccEEEccCCCCCCCCc-cccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L 177 (582)
.++++|++++|.++.++. .+.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+ |..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 468899999999987765 788899999999999988865 56788899999999999988866 778889999999999
Q ss_pred CCCCCCccc-hhhhccccccEeecccCcCc--ccCccccCCCCCCEEEccCCcCccc-CccccCCCCc----cEEeccCc
Q psy10956 178 RHNKLNELP-MVVYKLTSLKILYLRFNRIK--TVHPDIQYLSNLSMLSMRDNKIREL-PPELGELKNL----VTLDLAHN 249 (582)
Q Consensus 178 ~~n~l~~l~-~~~~~~~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~i-~~~l~~l~~L----~~L~l~~n 249 (582)
++|.++.++ ..++++++|++|++++|.+. .+|..++++++|++|++++|.++.+ +..++.+.+| ++|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 999888665 55778889999999999887 4677888999999999999988855 3445555444 47888888
Q ss_pred cCcccCccccCCCCCcEEeCCCCCCC--Ccchh-----------------------------------------------
Q psy10956 250 HLEELPKEIGNCTMLVTLDLQHNELV--NIPDM----------------------------------------------- 280 (582)
Q Consensus 250 ~l~~l~~~l~~~~~L~~L~l~~n~l~--~i~~~----------------------------------------------- 280 (582)
.++.++.......+|++|++++|.+. .+|..
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 88877766555557888888877653 11111
Q ss_pred ---------hcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCC
Q psy10956 281 ---------LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGG 351 (582)
Q Consensus 281 ---------~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 351 (582)
+..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. + .+++|++|++++|...... .
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~--~-~l~~L~~L~l~~n~~~~~~--~ 345 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPT--L-DLPFLKSLTLTMNKGSISF--K 345 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCC--C-CCSSCCEEEEESCSSCEEC--C
T ss_pred ccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCccccc--C-CCCccceeeccCCcCccch--h
Confidence 455677888888888887776 77778888888888888877773 4 7888888888888544322 4
Q ss_pred CCCCCcccEEEcCCCCCCCCC--hhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccc--hhhhCCCC
Q psy10956 352 PTQFTSVYSINFEHNQIDKIP--YGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLS--EDIQNLVN 427 (582)
Q Consensus 352 ~~~~~~L~~L~l~~~~i~~i~--~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~--~~l~~~~~ 427 (582)
+..+++|+.|++++|.+..+. ...+..+++|+.|++++|.+..++..+..+++|+.|++++|.+...+ ..+..+++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 567888889999988887553 45567888999999999888888888888889999999998887554 36778889
Q ss_pred CCEEECcCCCCC-ccccccCCCCCCCEEeCCCCCCCC--CcccccCCCcCCEEEccCCCCccc-cccccCCCCCCEEECC
Q psy10956 428 LEVLVLSNNLLK-KLPSSIGNLRKLKCLDLEENKLES--LPNEIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVG 503 (582)
Q Consensus 428 L~~L~ls~n~l~-~i~~~l~~~~~L~~L~L~~n~l~~--l~~~l~~~~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~ls 503 (582)
|++|++++|.++ ..|..+..+++|+.|++++|.++. +|..++.+++|++|++++|+++.+ |..+..+++|++|+++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 999999999888 456778888999999999998884 677788889999999999988755 5678888999999999
Q ss_pred CCCCCcC-cccccCCCCCCEEeCCCCCCCCCCCcccccCC-CCCEEecCCCCCC-CCcHH
Q psy10956 504 ENNLQSI-PEEIGTLENLHTLYLNDNTCLNNIPFELALCS-NLQIMSLDNCPLS-QIPSE 560 (582)
Q Consensus 504 ~n~l~~i-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~ls~n~l~-~i~~~ 560 (582)
+|+++.+ |..+..+++|++|++++|++. .+|..+..++ +|+.|++++|++. ..+..
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9988865 777888899999999999855 6776777776 5999999999887 44433
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.6e-47 Score=416.72 Aligned_cols=471 Identities=23% Similarity=0.298 Sum_probs=275.4
Q ss_pred cCccEEEccCCCCCCC-CccccCCCCCcEEEccCCCCcccCh-hccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHL-PPSVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L 177 (582)
.+|++|++++|.++.+ |..++++++|++|++++|.++.+|. .++.+++|++|++++|.++.+| ..|+++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 3466666666666644 3345666666666666666665554 3666666666666666666554 45666666666666
Q ss_pred CCCCCCcc-chhhhccccccEeecccCcCcccCcc---ccCCCCCCEEEccCCcCcccC-ccccCC--------------
Q psy10956 178 RHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPD---IQYLSNLSMLSMRDNKIRELP-PELGEL-------------- 238 (582)
Q Consensus 178 ~~n~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~L~~L~l~~n~l~~i~-~~l~~l-------------- 238 (582)
++|.++.+ +..+.++++|++|++++|.++.+++. ...+++|++|++++|.+..++ ..+..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 66666532 33445566666666666666544332 224456666666666665332 222222
Q ss_pred -------------CCccEEeccCccCccc-CccccCCC--CCcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcCCc-C
Q psy10956 239 -------------KNLVTLDLAHNHLEEL-PKEIGNCT--MLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLES-V 300 (582)
Q Consensus 239 -------------~~L~~L~l~~n~l~~l-~~~l~~~~--~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~-~ 300 (582)
++|+.|++++|.++.+ |..+..++ +|++|++++|.+..+ +..++.+++|++|++++|.+.+ .
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC
Confidence 3344444555544422 23344443 367777777766644 3456666777777777776665 3
Q ss_pred CccccCCCCCCEEEecCCCCC---------CCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCC-----
Q psy10956 301 PETLSKCVHLNEFNVEGCALS---------SLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHN----- 366 (582)
Q Consensus 301 ~~~l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~----- 366 (582)
+..+..+++|+.|+++++... .+....+..+++|++|++++|.+++..+..+..+++|+++++++|
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence 344555555555555544222 112223455566666666666665555555555555555555544
Q ss_pred -----------------------CCCCCChhhhhcCCCCCEEeccCCcCCc-cc-ccccCCCCCCEEECcCCCCCcc-ch
Q psy10956 367 -----------------------QIDKIPYGIFSRAKNLSKVNMKDNLLTS-LP-LDLGTWVGLTELNLGTNQISKL-SE 420 (582)
Q Consensus 367 -----------------------~i~~i~~~~~~~~~~L~~L~l~~n~l~~-l~-~~~~~~~~L~~L~l~~n~l~~~-~~ 420 (582)
.+..+....|..+++|+.|++++|.+.+ ++ ..+..+++|++|++++|.++.+ +.
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 448 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT
T ss_pred hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh
Confidence 3333333344445555555555555542 22 3444555555555555554432 23
Q ss_pred hhhCCCCCCEEECcCCCCC---ccccccCCCCCCCEEeCCCCCCCCCcc-cccCCCcCCEEEccCCCCccccc-------
Q psy10956 421 DIQNLVNLEVLVLSNNLLK---KLPSSIGNLRKLKCLDLEENKLESLPN-EIGFLKELQRLILQSNQLVSLPR------- 489 (582)
Q Consensus 421 ~l~~~~~L~~L~ls~n~l~---~i~~~l~~~~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~i~~------- 489 (582)
.+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++.++. .++.+++|++|++++|+++.++.
T Consensus 449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc
Confidence 3445556666666665543 445667777777788887777776654 36777778888888887765421
Q ss_pred --cccCCCCCCEEECCCCCCCcCcc-cccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEecCCCCCCCCcHHhHc-CC
Q psy10956 490 --AIGHLTNLSYLSVGENNLQSIPE-EIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVV-GG 565 (582)
Q Consensus 490 --~l~~~~~L~~L~ls~n~l~~i~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~i~~~~~~-~~ 565 (582)
.+..+++|++|++++|.++.+|. .+.++++|++|++++|.+.+..+..+..+++|+.|++++|.++.+++..|. .+
T Consensus 529 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608 (680)
T ss_dssp CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc
Confidence 25677788888888888777765 467788888888888876654444567778888888888888877777665 45
Q ss_pred hHHHHH
Q psy10956 566 PSLIIR 571 (582)
Q Consensus 566 ~~l~~~ 571 (582)
++|+.+
T Consensus 609 ~~L~~l 614 (680)
T 1ziw_A 609 RNLTEL 614 (680)
T ss_dssp TTCSEE
T ss_pred cccCEE
Confidence 555433
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-49 Score=430.39 Aligned_cols=453 Identities=20% Similarity=0.269 Sum_probs=277.6
Q ss_pred HHHHHHHHcccccCCCCCCC--------CCCCCCCCCcccCC---CCCeEEEEEcCCCCCCCCCCCCCCCccccccchHH
Q psy10956 26 EESSTALLNSDSSRSDEYGY--------FEDMPEKDNKKCGV---DVKKTVTVKHPESNKPKPTTKKKEPIQADLNIEKE 94 (582)
Q Consensus 26 ~~~~~aLl~~k~~~~~~~~~--------l~~w~~~~~~~c~~---~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (582)
..|++||.+++.++.++... ..+|.. +...|.| .| |.|+..
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~G-----V~C~~~---------------------- 80 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPG-----VSLNSN---------------------- 80 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTT-----EEECTT----------------------
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcccccCCCC-----eEEcCC----------------------
Confidence 46999999999998765322 235743 2455677 56 666431
Q ss_pred HhhhhccCccEEEccCCCCC-CCCccccCCCCCcEEEccCCCCc-------------ccCh-------------------
Q psy10956 95 FLRCKEENILNLDLSKSSIT-HLPPSVEKLTHLEELYLYGNKLA-------------SLPS------------------- 141 (582)
Q Consensus 95 ~~~~~~~~l~~L~ls~~~~~-~l~~~~~~l~~L~~L~l~~~~l~-------------~l~~------------------- 141 (582)
.+|+.|+|+++.++ .+|+.++++++|++|+|++|.+. .+|.
T Consensus 81 ------~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~ 154 (636)
T 4eco_A 81 ------GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154 (636)
T ss_dssp ------CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCG
T ss_pred ------CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCc
Confidence 24777888888887 67888888888888888888652 1111
Q ss_pred --hcc-------------------CCCCCCEEEcc--CCCCCCcchhhhCCCCCCEEeCCCCCCCc--------------
Q psy10956 142 --QIG-------------------YVTNLTCLGLA--ENSLTSLPDSLANLQQLRVLDLRHNKLNE-------------- 184 (582)
Q Consensus 142 --~~~-------------------~l~~L~~L~l~--~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-------------- 184 (582)
.+. ....++.+.+. .|.++.+|..++++++|++|+|++|.++.
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence 110 01112222222 34555677777777777777777777775
Q ss_pred ----cchhhh--ccccccEeecccCcCc-ccCccccCCCCCCEEEccCCc-Cc--ccCccccCC------CCccEEeccC
Q psy10956 185 ----LPMVVY--KLTSLKILYLRFNRIK-TVHPDIQYLSNLSMLSMRDNK-IR--ELPPELGEL------KNLVTLDLAH 248 (582)
Q Consensus 185 ----l~~~~~--~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~n~-l~--~i~~~l~~l------~~L~~L~l~~ 248 (582)
+|..++ ++++|++|++++|.+. .+|..++++++|++|++++|. ++ .+|..++.+ ++|++|++++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 677666 6777777777777655 556667777777777777776 65 366655554 6777777777
Q ss_pred ccCcccCc--cccCCCCCcEEeCCCCCCC-CcchhhcCCCCCcEEEccCCcCCcCCccccCCCC-CCEEEecCCCCCCCC
Q psy10956 249 NHLEELPK--EIGNCTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLESVPETLSKCVH-LNEFNVEGCALSSLP 324 (582)
Q Consensus 249 n~l~~l~~--~l~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~-L~~L~l~~~~~~~~~ 324 (582)
|.++.+|. .++.+++|++|++++|.+. .+| .+..+++|+.|++++|.++.+|..+..+++ |++|++++|.+..+|
T Consensus 315 n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp 393 (636)
T 4eco_A 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393 (636)
T ss_dssp SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC
T ss_pred CcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc
Confidence 77777766 6777777777777777776 666 666677777777777777766666777776 777777777777665
Q ss_pred hhhhcCC--CCCCEEEccCCcCccCCCCCCC-------CCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcc
Q psy10956 325 DGLLSSL--TSINNITLSRNKFTAYPSGGPT-------QFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL 395 (582)
Q Consensus 325 ~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l 395 (582)
.. +... ++|++|++++|.+++..+..+. .+++|+.|++++|.+..++...+..+++|+.|++++|.++.+
T Consensus 394 ~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 394 NI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp SC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred hh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 53 3332 3677777777777665555554 555677777777777766666666666677777766666655
Q ss_pred cccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccccC--CCCCCCEEeCCCCCCCCCcccccCCCc
Q psy10956 396 PLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIG--NLRKLKCLDLEENKLESLPNEIGFLKE 473 (582)
Q Consensus 396 ~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~l~--~~~~L~~L~L~~n~l~~l~~~l~~~~~ 473 (582)
|....... ...+.++++|++|++++|.++.+|..+. .+++|+.|++++|+++.+|..++.+++
T Consensus 473 ~~~~~~~~---------------~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~ 537 (636)
T 4eco_A 473 PKNSLKDE---------------NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSST 537 (636)
T ss_dssp CSSSSEET---------------TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSS
T ss_pred CHHHhccc---------------cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCC
Confidence 54332211 0001112245555555555554444443 455555555555555555554555555
Q ss_pred CCEEEcc------CCCCc-cccccccCCCCCCEEECCCCCCCcCcccccCCCCCCEEeCCCCCCC
Q psy10956 474 LQRLILQ------SNQLV-SLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCL 531 (582)
Q Consensus 474 L~~L~l~------~n~l~-~i~~~l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~L~l~~n~~~ 531 (582)
|++|+++ +|++. .+|..+..+++|++|++++|.++.+|..+. ++|++|++++|++.
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCc
Confidence 5555552 33333 555556666666666666666665655443 56666666666544
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.6e-47 Score=415.23 Aligned_cols=463 Identities=23% Similarity=0.291 Sum_probs=352.1
Q ss_pred HHhhhhccCccEEEccCCCCCCCCc-cccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCc-chhhhCCC
Q psy10956 94 EFLRCKEENILNLDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSL-PDSLANLQ 170 (582)
Q Consensus 94 ~~~~~~~~~l~~L~ls~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~ 170 (582)
.+..+ .+|++|++++|.++.+|. .++.+++|++|++++|.+..++ ..++.+++|++|++++|.++.+ |..+++++
T Consensus 68 ~~~~l--~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 145 (680)
T 1ziw_A 68 LCQKL--PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145 (680)
T ss_dssp HHHHC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred HHhcc--cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc
Confidence 34444 579999999999999987 5999999999999999999775 6799999999999999999854 56789999
Q ss_pred CCCEEeCCCCCCCccchh-h--hccccccEeecccCcCcccCcc-ccCC---------------------------CCCC
Q psy10956 171 QLRVLDLRHNKLNELPMV-V--YKLTSLKILYLRFNRIKTVHPD-IQYL---------------------------SNLS 219 (582)
Q Consensus 171 ~L~~L~L~~n~l~~l~~~-~--~~~~~L~~L~l~~~~~~~~~~~-l~~l---------------------------~~L~ 219 (582)
+|++|++++|.++.++.. + ..+++|++|++++|.+..+++. +..+ ++|+
T Consensus 146 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~ 225 (680)
T 1ziw_A 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225 (680)
T ss_dssp TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred cCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence 999999999999976654 2 2568999999999988755432 2222 4455
Q ss_pred EEEccCCcCcc-cCccccCCCC--ccEEeccCccCcccC-ccccCCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEEc--
Q psy10956 220 MLSMRDNKIRE-LPPELGELKN--LVTLDLAHNHLEELP-KEIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRL-- 292 (582)
Q Consensus 220 ~L~l~~n~l~~-i~~~l~~l~~--L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l-- 292 (582)
+|++++|.+.. .+..+..++. |++|++++|.++.++ ..++.+++|++|++++|.+..+ |..+..+++|+.|++
T Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred EEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 66666666552 2334444433 666666666666433 3456666666666666666533 334444555555555
Q ss_pred -------------------------------cCCcCCcC-CccccCCCCCCEEEecCCCCC--CCChhhhcC--CCCCCE
Q psy10956 293 -------------------------------SYNRLESV-PETLSKCVHLNEFNVEGCALS--SLPDGLLSS--LTSINN 336 (582)
Q Consensus 293 -------------------------------~~n~l~~~-~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~--~~~L~~ 336 (582)
++|.++++ +..+..+++|++|++++|.+. .++...+.. .+.|+.
T Consensus 306 ~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp CBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred hhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 44444442 223444555555555544321 222222221 135666
Q ss_pred EEccCCcCccCCCCCCCCCCcccEEEcCCCCCC-CCChhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECcCCC
Q psy10956 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID-KIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQ 414 (582)
Q Consensus 337 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~-~i~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~ 414 (582)
|++++|.+++..+..+..+++|+.|++++|.+. .++...|..+++|+.|++++|.+..+ +..+..+++|+.|++++|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 666667777777778888999999999999997 67778889999999999999998875 5678889999999999998
Q ss_pred CC---ccchhhhCCCCCCEEECcCCCCCccc-cccCCCCCCCEEeCCCCCCCCCcc---------cccCCCcCCEEEccC
Q psy10956 415 IS---KLSEDIQNLVNLEVLVLSNNLLKKLP-SSIGNLRKLKCLDLEENKLESLPN---------EIGFLKELQRLILQS 481 (582)
Q Consensus 415 l~---~~~~~l~~~~~L~~L~ls~n~l~~i~-~~l~~~~~L~~L~L~~n~l~~l~~---------~l~~~~~L~~L~l~~ 481 (582)
+. .+|..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.++.++. .++.+++|++|++++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 86 46778899999999999999999775 458899999999999999885422 267899999999999
Q ss_pred CCCccccc-cccCCCCCCEEECCCCCCCcCccc-ccCCCCCCEEeCCCCCCCCCCCcccc-cCCCCCEEecCCCCCC-CC
Q psy10956 482 NQLVSLPR-AIGHLTNLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDNTCLNNIPFELA-LCSNLQIMSLDNCPLS-QI 557 (582)
Q Consensus 482 n~l~~i~~-~l~~~~~L~~L~ls~n~l~~i~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~ls~n~l~-~i 557 (582)
|+++.+|. .+..+++|++|++++|+++.+|.. +..+++|++|++++|.+.+..+..+. .+++|+.|++++|++. .-
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 99999985 689999999999999999988765 68899999999999998776666666 7899999999999998 54
Q ss_pred c
Q psy10956 558 P 558 (582)
Q Consensus 558 ~ 558 (582)
+
T Consensus 626 ~ 626 (680)
T 1ziw_A 626 E 626 (680)
T ss_dssp C
T ss_pred c
Confidence 4
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-47 Score=414.60 Aligned_cols=428 Identities=22% Similarity=0.253 Sum_probs=370.5
Q ss_pred cCccEEEccCCCCCCC-CccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHL-PPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L 177 (582)
.+|++|++++|.++.+ |..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++.++ ..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 5799999999999977 45789999999999999999966 788999999999999999999776 67999999999999
Q ss_pred CCCCCC--ccchhhhccccccEeecccCcCcccC-ccccCCCCC----CEEEccCCcCcccCccccCCCCccEEeccCcc
Q psy10956 178 RHNKLN--ELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNL----SMLSMRDNKIRELPPELGELKNLVTLDLAHNH 250 (582)
Q Consensus 178 ~~n~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L----~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~ 250 (582)
++|.+. .+|..++++++|++|++++|.+..++ ..++.+.+| .+|++++|.+..++.......+|++|++++|.
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 999998 57899999999999999999998664 345555554 48999999999887766666689999988876
Q ss_pred Cc-----------------------------------------------------------ccCccccCCCCCcEEeCCC
Q psy10956 251 LE-----------------------------------------------------------ELPKEIGNCTMLVTLDLQH 271 (582)
Q Consensus 251 l~-----------------------------------------------------------~l~~~l~~~~~L~~L~l~~ 271 (582)
++ .+| .+..+++|++|++++
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAG 294 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGGGTTCSEEEEES
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc-ccccCCCCCEEEecC
Confidence 53 111 256678999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCC--C
Q psy10956 272 NELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYP--S 349 (582)
Q Consensus 272 n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~ 349 (582)
+.+..+| .+..+++|+.|++++|.+..+|. + .+++|++|++++|...... .+..+++|++|++++|.+++.. +
T Consensus 295 ~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 295 VSIKYLE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp CCCCCCC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred ccchhhh-hccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchh
Confidence 9999888 78999999999999999988884 4 9999999999999544222 3668999999999999988763 4
Q ss_pred CCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCccc--ccccCCCCCCEEECcCCCCCc-cchhhhCCC
Q psy10956 350 GGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP--LDLGTWVGLTELNLGTNQISK-LSEDIQNLV 426 (582)
Q Consensus 350 ~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~--~~~~~~~~L~~L~l~~n~l~~-~~~~l~~~~ 426 (582)
..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.+.+.+ ..+..+++|++|++++|.++. .+..+..++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 55678899999999999998877 56778999999999999998764 478899999999999999985 567788999
Q ss_pred CCCEEECcCCCCCc--cccccCCCCCCCEEeCCCCCCCCC-cccccCCCcCCEEEccCCCCccc-cccccCCCCCCEEEC
Q psy10956 427 NLEVLVLSNNLLKK--LPSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSV 502 (582)
Q Consensus 427 ~L~~L~ls~n~l~~--i~~~l~~~~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~l 502 (582)
+|++|++++|.++. +|..+..+++|+.|++++|.++.+ |..++.+++|++|++++|+++.+ |..+..+++|++|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 99999999999984 688899999999999999999954 56789999999999999999865 788999999999999
Q ss_pred CCCCCCcCcccccCCC-CCCEEeCCCCCCCCCCC
Q psy10956 503 GENNLQSIPEEIGTLE-NLHTLYLNDNTCLNNIP 535 (582)
Q Consensus 503 s~n~l~~i~~~~~~l~-~L~~L~l~~n~~~~~~~ 535 (582)
++|+++.+|..+..++ +|++|++++|++.+..+
T Consensus 529 ~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999998888887 59999999999887654
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-45 Score=393.46 Aligned_cols=452 Identities=21% Similarity=0.291 Sum_probs=385.0
Q ss_pred cCccEEEccCCCCCCC-CccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcch-hhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHL-PPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L 177 (582)
.++++|++++|.++.+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.++. .++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4699999999999976 45799999999999999999965 4679999999999999999997765 4999999999999
Q ss_pred CCCCCCc--cchhhhccccccEeecccCc-CcccC-ccccCCCCCCEEEccCCcCc-ccCccccCCCCccEEeccCccCc
Q psy10956 178 RHNKLNE--LPMVVYKLTSLKILYLRFNR-IKTVH-PDIQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE 252 (582)
Q Consensus 178 ~~n~l~~--l~~~~~~~~~L~~L~l~~~~-~~~~~-~~l~~l~~L~~L~l~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~ 252 (582)
++|.++. +|..+.++++|++|++++|. +..++ ..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999984 56678899999999999998 55665 46899999999999999999 57788999999999999999988
Q ss_pred ccCccc-cCCCCCcEEeCCCCCCCCcc----hhhcCCCCCcEEEccCCcCCc-----CCccccCCCCCCEEEecCCCCCC
Q psy10956 253 ELPKEI-GNCTMLVTLDLQHNELVNIP----DMLGNLINLTRLRLSYNRLES-----VPETLSKCVHLNEFNVEGCALSS 322 (582)
Q Consensus 253 ~l~~~l-~~~~~L~~L~l~~n~l~~i~----~~~~~~~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~~~~~~ 322 (582)
.+|..+ ..+++|++|++++|.+.+++ .....+++|+.|++++|.+++ ++..+..+++|+.+++++|.+..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 776654 56899999999999998642 233467899999999998874 33456778899999999998764
Q ss_pred CCh------hhhcCCCCCCEEEccCCcCccCCC-CC----CCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCc
Q psy10956 323 LPD------GLLSSLTSINNITLSRNKFTAYPS-GG----PTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNL 391 (582)
Q Consensus 323 ~~~------~~~~~~~~L~~L~l~~n~l~~~~~-~~----~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~ 391 (582)
+.. ..+..+.+++.+.+.++.+..... .. +....+++.+++++|.+..++...+..+++|+.|++++|.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 322 224567899999999887654311 00 1234689999999999999999888889999999999999
Q ss_pred CCc-c---cccccCCCCCCEEECcCCCCCccc---hhhhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCC
Q psy10956 392 LTS-L---PLDLGTWVGLTELNLGTNQISKLS---EDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESL 464 (582)
Q Consensus 392 l~~-l---~~~~~~~~~L~~L~l~~n~l~~~~---~~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l 464 (582)
+.+ + +..+..+++|++|++++|.++.++ ..+..+++|++|++++|+++.+|..+..+++|+.|++++|+++.+
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l 425 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCC
T ss_pred cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccc
Confidence 986 3 344788999999999999999765 347889999999999999999999999999999999999999988
Q ss_pred cccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCcccccCCCCCCEEeCCCCCCCCCCCcccccCCCC
Q psy10956 465 PNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNL 544 (582)
Q Consensus 465 ~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 544 (582)
|..+ .++|++|++++|+++.++ ..+++|++|++++|+++.+|. ...+++|++|++++|++.+..|..+..+++|
T Consensus 426 ~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 426 KTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499 (549)
T ss_dssp CTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred cchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCccc
Confidence 7654 379999999999998765 578999999999999999987 4679999999999999988888889999999
Q ss_pred CEEecCCCCCC-CCc
Q psy10956 545 QIMSLDNCPLS-QIP 558 (582)
Q Consensus 545 ~~L~ls~n~l~-~i~ 558 (582)
+.|++++|+++ ..|
T Consensus 500 ~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 500 QKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred CEEEecCCCccCCCc
Confidence 99999999987 544
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-45 Score=412.91 Aligned_cols=447 Identities=24% Similarity=0.281 Sum_probs=299.9
Q ss_pred cCccEEEccCCCCCCC-CccccCCCCCcEEEccCCCCc-cc-ChhccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEe
Q psy10956 101 ENILNLDLSKSSITHL-PPSVEKLTHLEELYLYGNKLA-SL-PSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLD 176 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l-~~~~~~l~~L~~L~l~~~~l~-~l-~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~ 176 (582)
.++++|||++|.++.+ |..+.++++|++|++++|... .+ |..+..+++|++|++++|.+..+ |..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 4689999999999865 567889999999999998554 66 67789999999999999999855 78889999999999
Q ss_pred CCCCCCCc-cchh--hhccccccEeecccCcCcccC--ccccCCCCCCEEEccCCcCcc-cCccccCC--CCccEEeccC
Q psy10956 177 LRHNKLNE-LPMV--VYKLTSLKILYLRFNRIKTVH--PDIQYLSNLSMLSMRDNKIRE-LPPELGEL--KNLVTLDLAH 248 (582)
Q Consensus 177 L~~n~l~~-l~~~--~~~~~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~n~l~~-i~~~l~~l--~~L~~L~l~~ 248 (582)
|++|.++. ++.. +.++++|++|++++|.+..++ ..++++++|++|++++|.+.. .+..+..+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 99998884 5544 678899999999999888553 468899999999999998873 45556655 7888888888
Q ss_pred ccCc-ccCccccCCCC------CcEEeCCCCCCC-Ccchhhc------------------------------------C-
Q psy10956 249 NHLE-ELPKEIGNCTM------LVTLDLQHNELV-NIPDMLG------------------------------------N- 283 (582)
Q Consensus 249 n~l~-~l~~~l~~~~~------L~~L~l~~n~l~-~i~~~~~------------------------------------~- 283 (582)
|.+. ..|..++.+++ |++|++++|.+. .++..+. .
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 8777 34445555544 888888887654 2222111 1
Q ss_pred -CCCCcEEEccCCcCCc-CCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEE
Q psy10956 284 -LINLTRLRLSYNRLES-VPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSI 361 (582)
Q Consensus 284 -~~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 361 (582)
.++|+.|++++|.+.. .+..+..+++|+.|++++|.+..+++..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 2578888888887776 35567778888888888888887776667788888888888888887777777788888888
Q ss_pred EcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccchh--------------------
Q psy10956 362 NFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSED-------------------- 421 (582)
Q Consensus 362 ~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~-------------------- 421 (582)
++++|.+..++...|..+++|+.|++++|.++.++. +++|+.+++++|.++.++..
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~ 419 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTH
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCccccCchh
Confidence 888888887777777778888888888887776542 55666666666666554432
Q ss_pred --hhCCCCCCEEECcCCCCCcccc--ccCCCCCCCEEeCCCCCCCCC------cccccCCCcCCEEEccCCCCcccc-cc
Q psy10956 422 --IQNLVNLEVLVLSNNLLKKLPS--SIGNLRKLKCLDLEENKLESL------PNEIGFLKELQRLILQSNQLVSLP-RA 490 (582)
Q Consensus 422 --l~~~~~L~~L~ls~n~l~~i~~--~l~~~~~L~~L~L~~n~l~~l------~~~l~~~~~L~~L~l~~n~l~~i~-~~ 490 (582)
+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+ +..+..+++|++|++++|.++.++ ..
T Consensus 420 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (844)
T 3j0a_A 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499 (844)
T ss_dssp HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred hhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence 2244445555555554443221 133344555555555544311 122344455555555555554333 33
Q ss_pred ccCCCCCCEEECCCCCCCcCcccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEecCCCCCC
Q psy10956 491 IGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS 555 (582)
Q Consensus 491 l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 555 (582)
+..+++|+.|++++|+++.+|...-. ++|+.|++++|.+.+..|.. +++|+.|++++|++.
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 500 FSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFI 560 (844)
T ss_dssp SSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCC
T ss_pred ccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhH---hCCcCEEEecCCCcc
Confidence 44555555555555555544332221 45555555555554444432 234555555555554
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-45 Score=399.69 Aligned_cols=394 Identities=21% Similarity=0.322 Sum_probs=232.8
Q ss_pred CCCCCCCcccCCCCCeEEEEEcCCCCCCCCCCCCCCCccccccchHHHhhhhccCccEEEccCCCC--------------
Q psy10956 48 DMPEKDNKKCGVDVKKTVTVKHPESNKPKPTTKKKEPIQADLNIEKEFLRCKEENILNLDLSKSSI-------------- 113 (582)
Q Consensus 48 ~w~~~~~~~c~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ls~~~~-------------- 113 (582)
.|..+.||.|+.. +||+++++.+.++.+. ++.++..+ .+|++|+|++|.+
T Consensus 68 ~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~-------------lp~~l~~L--~~L~~L~Ls~N~~~~~~~~~~~~~~~~ 131 (636)
T 4eco_A 68 MWGAQPGVSLNSN-GRVTGLSLEGFGASGR-------------VPDAIGQL--TELEVLALGSHGEKVNERLFGPKGISA 131 (636)
T ss_dssp GTTCCTTEEECTT-CCEEEEECTTSCCEEE-------------ECGGGGGC--TTCCEEESCCGGGGGTCCSBSTTSBCT
T ss_pred cccCCCCeEEcCC-CCEEEEEecCcccCCc-------------CChHHhcC--ccceEEECcCCccccCCcccccccccc
Confidence 3433499999866 7999999998766532 44455544 4699999998854
Q ss_pred ----------------------------------------------------------------CCCCccccCCCCCcEE
Q psy10956 114 ----------------------------------------------------------------THLPPSVEKLTHLEEL 129 (582)
Q Consensus 114 ----------------------------------------------------------------~~l~~~~~~l~~L~~L 129 (582)
+.+|..++++++|++|
T Consensus 132 ~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L 211 (636)
T 4eco_A 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQF 211 (636)
T ss_dssp TCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEE
T ss_pred CchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEE
Confidence 1345555555666666
Q ss_pred EccCCCCcc------------------cChhcc--CCCCCCEEEccCCCCC-CcchhhhCCCCCCEEeCCCCC-CC--cc
Q psy10956 130 YLYGNKLAS------------------LPSQIG--YVTNLTCLGLAENSLT-SLPDSLANLQQLRVLDLRHNK-LN--EL 185 (582)
Q Consensus 130 ~l~~~~l~~------------------l~~~~~--~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~--~l 185 (582)
++++|.++. +|..++ .+++|++|++++|.+. .+|..++++++|++|++++|+ ++ .+
T Consensus 212 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l 291 (636)
T 4eco_A 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291 (636)
T ss_dssp EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHH
T ss_pred ECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccc
Confidence 666665554 555555 5666666666665544 455555556666666666655 54 25
Q ss_pred chhhhcc------ccccEeecccCcCcccCc--cccCCCCCCEEEccCCcCc-ccCccccCCCCccEEeccCccCcccCc
Q psy10956 186 PMVVYKL------TSLKILYLRFNRIKTVHP--DIQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLEELPK 256 (582)
Q Consensus 186 ~~~~~~~------~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~l~~ 256 (582)
|..++.+ ++|++|++++|.++.+|. .++.+++|++|++++|.+. .+| .++.+++|++|++++|.++.+|.
T Consensus 292 p~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~ 370 (636)
T 4eco_A 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA 370 (636)
T ss_dssp HHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCT
T ss_pred hHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccH
Confidence 5555444 556666666665555555 5555556666666666555 555 55555556666666665555555
Q ss_pred cccCCCC-CcEEeCCCCCCCCcchhhcCCC--CCcEEEccCCcCCc-CCcccc-------CCCCCCEEEecCCCCCCCCh
Q psy10956 257 EIGNCTM-LVTLDLQHNELVNIPDMLGNLI--NLTRLRLSYNRLES-VPETLS-------KCVHLNEFNVEGCALSSLPD 325 (582)
Q Consensus 257 ~l~~~~~-L~~L~l~~n~l~~i~~~~~~~~--~L~~L~l~~n~l~~-~~~~l~-------~~~~L~~L~l~~~~~~~~~~ 325 (582)
.++.+++ |++|++++|.++.+|..+...+ +|+.|++++|.+++ +|..+. .+++|++|++++|.+..++.
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 5555555 6666666665555555444433 55556666555554 333444 44455555555555555555
Q ss_pred hhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhc-------CCCCCEEeccCCcCCccccc
Q psy10956 326 GLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSR-------AKNLSKVNMKDNLLTSLPLD 398 (582)
Q Consensus 326 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~-------~~~L~~L~l~~n~l~~l~~~ 398 (582)
..+..+++|++|++++|.++ .++...+.. +++|+.|++++|.++.+|..
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~------------------------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 506 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLT------------------------EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCS------------------------BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred HHHccCCCCCEEECCCCCCC------------------------CcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence 54555555555555555554 444333332 23788888888888877777
Q ss_pred cc--CCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCC------CC-ccccccCCCCCCCEEeCCCCCCCCCccccc
Q psy10956 399 LG--TWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNL------LK-KLPSSIGNLRKLKCLDLEENKLESLPNEIG 469 (582)
Q Consensus 399 ~~--~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~------l~-~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~ 469 (582)
+. .+++|+.|++++|.++.+|..+..+++|++|++++|+ +. .+|..+..+++|+.|++++|+++.+|..+.
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~ 586 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC
T ss_pred hhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh
Confidence 66 7788888888888887777777778888888885543 22 344444444444444444444444444322
Q ss_pred CCCcCCEEEccCCCC
Q psy10956 470 FLKELQRLILQSNQL 484 (582)
Q Consensus 470 ~~~~L~~L~l~~n~l 484 (582)
++|++|++++|++
T Consensus 587 --~~L~~L~Ls~N~l 599 (636)
T 4eco_A 587 --PNISVLDIKDNPN 599 (636)
T ss_dssp --TTCCEEECCSCTT
T ss_pred --CcCCEEECcCCCC
Confidence 3444444444433
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-45 Score=392.89 Aligned_cols=452 Identities=22% Similarity=0.272 Sum_probs=377.7
Q ss_pred cCccEEEccCCCCCCCCc-cccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L 177 (582)
.++++|++++|.++.++. .+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.+| ..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 469999999999997754 789999999999999999966 456899999999999999999765 68999999999999
Q ss_pred CCCCCCccch-hhhccccccEeecccCcCcc--cCccccCCCCCCEEEccCCcCcccC-ccccCCCCc----cEEeccCc
Q psy10956 178 RHNKLNELPM-VVYKLTSLKILYLRFNRIKT--VHPDIQYLSNLSMLSMRDNKIRELP-PELGELKNL----VTLDLAHN 249 (582)
Q Consensus 178 ~~n~l~~l~~-~~~~~~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~i~-~~l~~l~~L----~~L~l~~n 249 (582)
++|.++.++. .++++++|++|++++|.+.. +|..++++++|++|++++|.+..++ ..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999998776 47789999999999999885 6788999999999999999998654 457777777 89999999
Q ss_pred cCcccCccccCCCCCcEEeCCCCCCC--CcchhhcCCCCCcEE--------------------------------EccCC
Q psy10956 250 HLEELPKEIGNCTMLVTLDLQHNELV--NIPDMLGNLINLTRL--------------------------------RLSYN 295 (582)
Q Consensus 250 ~l~~l~~~l~~~~~L~~L~l~~n~l~--~i~~~~~~~~~L~~L--------------------------------~l~~n 295 (582)
.+..++.......+|++|++++|... .++..+..++.++.. ++.++
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 99976655444458999999887543 344455555554443 33333
Q ss_pred -cCCc-CCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCCh
Q psy10956 296 -RLES-VPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPY 373 (582)
Q Consensus 296 -~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~ 373 (582)
.+.+ ++..+..+++|++|++++|.+..++.. +..+ +|++|++++|.+..++. ..+++|+.+++++|.+.....
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBC-CSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhh-hccC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccccc
Confidence 2322 556678889999999999999888876 5556 99999999999886554 467899999999998874332
Q ss_pred hhhhcCCCCCEEeccCCcCCcc---cccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccc--cccCCC
Q psy10956 374 GIFSRAKNLSKVNMKDNLLTSL---PLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLP--SSIGNL 448 (582)
Q Consensus 374 ~~~~~~~~L~~L~l~~n~l~~l---~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~--~~l~~~ 448 (582)
. ..+++|+.|++++|.++.. +..+..+++|++|++++|.++.++..+..+++|++|++++|.+..++ ..+..+
T Consensus 343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence 2 5789999999999999865 56788899999999999999987777889999999999999988553 468899
Q ss_pred CCCCEEeCCCCCCCC-CcccccCCCcCCEEEccCCCCc--cccccccCCCCCCEEECCCCCCCcC-cccccCCCCCCEEe
Q psy10956 449 RKLKCLDLEENKLES-LPNEIGFLKELQRLILQSNQLV--SLPRAIGHLTNLSYLSVGENNLQSI-PEEIGTLENLHTLY 524 (582)
Q Consensus 449 ~~L~~L~L~~n~l~~-l~~~l~~~~~L~~L~l~~n~l~--~i~~~l~~~~~L~~L~ls~n~l~~i-~~~~~~l~~L~~L~ 524 (582)
++|+.|++++|.+.. .|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 999999999999884 5667889999999999999986 6888999999999999999999966 77889999999999
Q ss_pred CCCCCCCCCCCcccccCCCCCEEecCCCCCC-CCcH
Q psy10956 525 LNDNTCLNNIPFELALCSNLQIMSLDNCPLS-QIPS 559 (582)
Q Consensus 525 l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~-~i~~ 559 (582)
+++|.+.+..+..+..+++|+.|++++|+++ ..|.
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999988877777899999999999999998 5553
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.1e-45 Score=401.55 Aligned_cols=420 Identities=20% Similarity=0.269 Sum_probs=249.1
Q ss_pred CCcccCCCCCeEEEEEcCCCCCCCCCCCCCCCccccccchHHHhhhhccCccEEEc-cCCCCCCC-Cc------------
Q psy10956 53 DNKKCGVDVKKTVTVKHPESNKPKPTTKKKEPIQADLNIEKEFLRCKEENILNLDL-SKSSITHL-PP------------ 118 (582)
Q Consensus 53 ~~~~c~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l-s~~~~~~l-~~------------ 118 (582)
.||.|+. .+||+++++.+.++.+. +++.+..+ .+|++|+| ++|.+... |-
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~~~L~G~-------------ip~~l~~L--~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~ 378 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAGFGAKGR-------------VPDAIGQL--TELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378 (876)
T ss_dssp TTEEECT-TSCEEEEECTTTCCEEE-------------ECGGGGGC--TTCCEEESCCTTHHHHTTCBTTBCCCSSCCHH
T ss_pred CceEecC-CCCEEEEECccCCCCCc-------------CchHHhcc--ccceEeeecccccccccccccccccccccchh
Confidence 8999986 57999999998776542 44445444 46999999 66643210 00
Q ss_pred ---------------------------------------cccCCCCCcEEEccC--CCCcccChhccCCCCCCEEEccCC
Q psy10956 119 ---------------------------------------SVEKLTHLEELYLYG--NKLASLPSQIGYVTNLTCLGLAEN 157 (582)
Q Consensus 119 ---------------------------------------~~~~l~~L~~L~l~~--~~l~~l~~~~~~l~~L~~L~l~~n 157 (582)
.......++.+.+.. |.++.+|..++.+++|++|+|++|
T Consensus 379 ~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N 458 (876)
T 4ecn_A 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458 (876)
T ss_dssp HHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC
T ss_pred HHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC
Confidence 000111222222222 444455666666666666666666
Q ss_pred CCCC------------------cchhhh--CCCCCCEEeCCCCCCC-ccchhhhccccccEeecccCc-Ccc--cCcccc
Q psy10956 158 SLTS------------------LPDSLA--NLQQLRVLDLRHNKLN-ELPMVVYKLTSLKILYLRFNR-IKT--VHPDIQ 213 (582)
Q Consensus 158 ~l~~------------------lp~~l~--~l~~L~~L~L~~n~l~-~l~~~~~~~~~L~~L~l~~~~-~~~--~~~~l~ 213 (582)
.++. +|..++ ++++|++|+|++|.+. .+|..++++++|++|++++|+ ++. +|..++
T Consensus 459 ~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~ 538 (876)
T 4ecn_A 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538 (876)
T ss_dssp CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH
Confidence 6655 555554 6666666666666544 555555566666666666665 543 444333
Q ss_pred CC-------CCCCEEEccCCcCcccCc--cccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcCC
Q psy10956 214 YL-------SNLSMLSMRDNKIRELPP--ELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNL 284 (582)
Q Consensus 214 ~l-------~~L~~L~l~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~ 284 (582)
.+ ++|++|++++|.+..+|. .++.+++|+.|++++|.++.+| .++.+++|++|++++|.+..+|..+..+
T Consensus 539 ~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l 617 (876)
T 4ecn_A 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAF 617 (876)
T ss_dssp HHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEE
T ss_pred hhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhc
Confidence 32 366666666666666655 5666666666666666666555 5556666666666666666666556666
Q ss_pred CC-CcEEEccCCcCCcCCccccCCCC--CCEEEecCCCCCCCChhh---hc--CCCCCCEEEccCCcCccCCCCCCCCCC
Q psy10956 285 IN-LTRLRLSYNRLESVPETLSKCVH--LNEFNVEGCALSSLPDGL---LS--SLTSINNITLSRNKFTAYPSGGPTQFT 356 (582)
Q Consensus 285 ~~-L~~L~l~~n~l~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~ 356 (582)
++ |+.|++++|.++.+|..+...+. |+.|++++|.+....+.. +. .+++|+.|++++|.++.++...+..++
T Consensus 618 ~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~ 697 (876)
T 4ecn_A 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697 (876)
T ss_dssp CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC
T ss_pred cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC
Confidence 65 66666666666655555544433 666666666654322211 11 223566666666666644433333455
Q ss_pred cccEEEcCCCCCCCCChhhhhc-------CCCCCEEeccCCcCCccccccc--CCCCCCEEECcCCCCCccchhhhCCCC
Q psy10956 357 SVYSINFEHNQIDKIPYGIFSR-------AKNLSKVNMKDNLLTSLPLDLG--TWVGLTELNLGTNQISKLSEDIQNLVN 427 (582)
Q Consensus 357 ~L~~L~l~~~~i~~i~~~~~~~-------~~~L~~L~l~~n~l~~l~~~~~--~~~~L~~L~l~~n~l~~~~~~l~~~~~ 427 (582)
+|+.|++++|.+..++...+.. +++|+.|++++|.++.+|..+. .+++|+.|++++|.++.+|..+..+++
T Consensus 698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~ 777 (876)
T 4ecn_A 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ 777 (876)
T ss_dssp CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTT
T ss_pred CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCC
Confidence 6666666666666555554433 3388888888888888887776 788888888888888888877888888
Q ss_pred CCEEECcCCCCCccccccCCCCCCCEEeCCCCCCC-CCcccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCC
Q psy10956 428 LEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLE-SLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENN 506 (582)
Q Consensus 428 L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~-~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~ 506 (582)
|+.|++++|. ++++|++. .+|..++.+++|++|++++|++..+|..+. ++|+.|+|++|.
T Consensus 778 L~~L~Ls~N~-----------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 778 LKAFGIRHQR-----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCEEECCCCB-----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCT
T ss_pred CCEEECCCCC-----------------CcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCC
Confidence 8888887754 33444443 344455555555555555555555554433 355555555555
Q ss_pred CC
Q psy10956 507 LQ 508 (582)
Q Consensus 507 l~ 508 (582)
+.
T Consensus 839 l~ 840 (876)
T 4ecn_A 839 NI 840 (876)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-44 Score=388.32 Aligned_cols=430 Identities=23% Similarity=0.308 Sum_probs=364.8
Q ss_pred cCccEEEccCCCCCCCC-ccccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCcch-hhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHLP-PSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L 177 (582)
.+|++|++++|.++.++ ..+.++++|++|++++|.++.++ ..++.+++|++|++++|.++.++. .++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 57999999999999876 46899999999999999999665 679999999999999999998875 6899999999999
Q ss_pred CCCCCCc--cchhhhccccccEeecccCcCcccC-ccccCCCCC----CEEEccCCcCcccCccccCCCCccEEeccCcc
Q psy10956 178 RHNKLNE--LPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNL----SMLSMRDNKIRELPPELGELKNLVTLDLAHNH 250 (582)
Q Consensus 178 ~~n~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L----~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~ 250 (582)
++|.++. +|..+.++++|++|++++|.+..++ ..++.+++| +.+++++|.+..++.......+|++|++++|.
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc
Confidence 9999984 7899999999999999999998664 457777777 89999999999665554444589999998874
Q ss_pred Cc--ccCccccCCCC--------------------------------CcEEeCCCC-CCC-CcchhhcCCCCCcEEEccC
Q psy10956 251 LE--ELPKEIGNCTM--------------------------------LVTLDLQHN-ELV-NIPDMLGNLINLTRLRLSY 294 (582)
Q Consensus 251 l~--~l~~~l~~~~~--------------------------------L~~L~l~~n-~l~-~i~~~~~~~~~L~~L~l~~ 294 (582)
.. .++..+..++. ++.++++++ .+. .++..+..+++|+.|++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 32 22222222222 334444444 233 4567788899999999999
Q ss_pred CcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCC--
Q psy10956 295 NRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIP-- 372 (582)
Q Consensus 295 n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~-- 372 (582)
|.++.+|..+..+ +|++|++++|.+..++. ..+++|++|++.+|.+....+. ..+++|+.|++++|.+..+.
T Consensus 292 ~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 292 VTIERVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp CEECSCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred ccchhhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence 9999999998888 99999999999998876 4678999999999988765443 67899999999999998654
Q ss_pred hhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccc--hhhhCCCCCCEEECcCCCCC-ccccccCCCC
Q psy10956 373 YGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLS--EDIQNLVNLEVLVLSNNLLK-KLPSSIGNLR 449 (582)
Q Consensus 373 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~ls~n~l~-~i~~~l~~~~ 449 (582)
...+..+++|+.|++++|.+..++..+..+++|++|++++|.+...+ ..+..+++|++|++++|.+. ..+..+..++
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 45677899999999999999988777899999999999999988653 35788999999999999998 4577889999
Q ss_pred CCCEEeCCCCCCC--CCcccccCCCcCCEEEccCCCCccc-cccccCCCCCCEEECCCCCCCcCc-ccccCCCCCCEEeC
Q psy10956 450 KLKCLDLEENKLE--SLPNEIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNLQSIP-EEIGTLENLHTLYL 525 (582)
Q Consensus 450 ~L~~L~L~~n~l~--~l~~~l~~~~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~ls~n~l~~i~-~~~~~l~~L~~L~l 525 (582)
+|+.|++++|.++ .+|..++.+++|++|++++|+++.+ |..+..+++|++|++++|+++.++ ..+..+++|++|++
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 9999999999987 5888899999999999999999966 788999999999999999999775 45789999999999
Q ss_pred CCCCCCCCCCc
Q psy10956 526 NDNTCLNNIPF 536 (582)
Q Consensus 526 ~~n~~~~~~~~ 536 (582)
++|++.+..|.
T Consensus 526 ~~N~~~~~~~~ 536 (570)
T 2z63_A 526 HTNPWDCSCPR 536 (570)
T ss_dssp CSSCBCCCTTT
T ss_pred cCCcccCCCcc
Confidence 99999887663
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-44 Score=402.90 Aligned_cols=451 Identities=23% Similarity=0.294 Sum_probs=348.1
Q ss_pred cEEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCC-Cc-chhhhCCCCCCEEeCCCC
Q psy10956 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLT-SL-PDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 104 ~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~-~l-p~~l~~l~~L~~L~L~~n 180 (582)
+..|++++.++.+|. ..+++++|+|++|.++.+ |..+..+++|++|++++|... .+ |..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 468899999999997 458899999999999955 778999999999999999554 66 678999999999999999
Q ss_pred CCCcc-chhhhccccccEeecccCcCcc-cCcc--ccCCCCCCEEEccCCcCccc--CccccCCCCccEEeccCccCcc-
Q psy10956 181 KLNEL-PMVVYKLTSLKILYLRFNRIKT-VHPD--IQYLSNLSMLSMRDNKIREL--PPELGELKNLVTLDLAHNHLEE- 253 (582)
Q Consensus 181 ~l~~l-~~~~~~~~~L~~L~l~~~~~~~-~~~~--l~~l~~L~~L~l~~n~l~~i--~~~l~~l~~L~~L~l~~n~l~~- 253 (582)
.+..+ |..+.++++|++|++++|.+.. ++.. +.++++|++|++++|.+..+ +..++++++|++|++++|.++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 99955 7788899999999999999985 4444 89999999999999999854 3568999999999999999984
Q ss_pred cCccccCC--CCCcEEeCCCCCCCC-cchhhcCCCC------CcEEEccCCcCCc-CCcccc------------------
Q psy10956 254 LPKEIGNC--TMLVTLDLQHNELVN-IPDMLGNLIN------LTRLRLSYNRLES-VPETLS------------------ 305 (582)
Q Consensus 254 l~~~l~~~--~~L~~L~l~~n~l~~-i~~~~~~~~~------L~~L~l~~n~l~~-~~~~l~------------------ 305 (582)
.+..+..+ ++|++|++++|.+.. .+..++.+++ |+.|++++|.++. ++..+.
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 45566666 899999999999883 5555555554 9999999997653 222211
Q ss_pred ------------------C--CCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCC
Q psy10956 306 ------------------K--CVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEH 365 (582)
Q Consensus 306 ------------------~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (582)
. .++|+.|++++|.+..++...+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 1 26789999999998887777788899999999999999988888888899999999999
Q ss_pred CCCCCCChhhhhcCCCCCEEeccCCcCCccc-ccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccc
Q psy10956 366 NQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP-LDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSS 444 (582)
Q Consensus 366 ~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~ 444 (582)
|.+..+....|..+++|+.|++++|.+..++ ..+..+++|+.|++++|.++.++. +++|+.|++++|.++.+|..
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI 399 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc
Confidence 9998887778888999999999999988764 457888999999999998886543 66677777777766655432
Q ss_pred ----------------------cCCCCCCCEEeCCCCCCCCCcc--cccCCCcCCEEEccCCCCccc------cccccCC
Q psy10956 445 ----------------------IGNLRKLKCLDLEENKLESLPN--EIGFLKELQRLILQSNQLVSL------PRAIGHL 494 (582)
Q Consensus 445 ----------------------l~~~~~L~~L~L~~n~l~~l~~--~l~~~~~L~~L~l~~n~l~~i------~~~l~~~ 494 (582)
+..+++|+.|++++|+++.++. .+..+++|+.|++++|.+..+ +..+..+
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 3355666666666666664332 234456666666666666422 2345666
Q ss_pred CCCCEEECCCCCCCcCc-ccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEecCCCCCCCCcHHhHc
Q psy10956 495 TNLSYLSVGENNLQSIP-EEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVV 563 (582)
Q Consensus 495 ~~L~~L~ls~n~l~~i~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~i~~~~~~ 563 (582)
++|+.|++++|+++.++ ..+..+++|++|++++|.+.+..+..+. ++|+.|++++|.++.+++..|.
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence 77777777777776553 3456777777777777775554443333 6777777777777755554444
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-44 Score=380.06 Aligned_cols=444 Identities=20% Similarity=0.264 Sum_probs=368.8
Q ss_pred cEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeCCCCC
Q psy10956 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNK 181 (582)
Q Consensus 104 ~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L~~n~ 181 (582)
++||++++.++.+|..+. ++|++|++++|.++.++ ..+..+++|++|++++|.++.+ |..|+++++|++|++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 569999999999998765 89999999999999765 6799999999999999999966 7789999999999999999
Q ss_pred CCccchhhhccccccEeecccCcCcc--cCccccCCCCCCEEEccCCcCcccCccccCCCCc--cEEeccCccC--c-cc
Q psy10956 182 LNELPMVVYKLTSLKILYLRFNRIKT--VHPDIQYLSNLSMLSMRDNKIRELPPELGELKNL--VTLDLAHNHL--E-EL 254 (582)
Q Consensus 182 l~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L--~~L~l~~n~l--~-~l 254 (582)
++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ . ..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccc
Confidence 9988877 89999999999999985 56789999999999999999875 356677777 9999999998 4 55
Q ss_pred CccccCCC-CCcEEeCCCCCCCC-c-chhhcCCCCCcEEEccCCc-------CCcCCccccCCCCCCEEEecCCCCCCCC
Q psy10956 255 PKEIGNCT-MLVTLDLQHNELVN-I-PDMLGNLINLTRLRLSYNR-------LESVPETLSKCVHLNEFNVEGCALSSLP 324 (582)
Q Consensus 255 ~~~l~~~~-~L~~L~l~~n~l~~-i-~~~~~~~~~L~~L~l~~n~-------l~~~~~~l~~~~~L~~L~l~~~~~~~~~ 324 (582)
|..+..+. +...+++++|.+.+ + +..+..+++|+.+++++|. +.+....+..+++|+.|+++++.+....
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 66665554 34467788887763 3 3467788999999999986 4443347888999999999988765211
Q ss_pred h-hhh--cCCCCCCEEEccCCcCccCCCCCC-----CCCCcccEEEcCCCCCCCCChhhhhcC---CCCCEEeccCCcCC
Q psy10956 325 D-GLL--SSLTSINNITLSRNKFTAYPSGGP-----TQFTSVYSINFEHNQIDKIPYGIFSRA---KNLSKVNMKDNLLT 393 (582)
Q Consensus 325 ~-~~~--~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~~~i~~i~~~~~~~~---~~L~~L~l~~n~l~ 393 (582)
. ... ...++|++|++++|.+++..+..+ ..++.|+.++++.|.+ .++...+..+ .+|+.|++++|.+.
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc
Confidence 1 111 124689999999999987666656 7889999999999999 7774444333 68999999999987
Q ss_pred cccccccCCCCCCEEECcCCCCCc-cchhhhCCCCCCEEECcCCCCCc---cccccCCCCCCCEEeCCCCCCCC-Cccc-
Q psy10956 394 SLPLDLGTWVGLTELNLGTNQISK-LSEDIQNLVNLEVLVLSNNLLKK---LPSSIGNLRKLKCLDLEENKLES-LPNE- 467 (582)
Q Consensus 394 ~l~~~~~~~~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~ls~n~l~~---i~~~l~~~~~L~~L~L~~n~l~~-l~~~- 467 (582)
..+. ...+++|++|++++|.++. ++..+..+++|++|++++|.++. +|..+..+++|+.|++++|.++. +|..
T Consensus 316 ~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 316 HMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred cccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 6542 2678899999999999996 77788999999999999999984 45678999999999999999997 8775
Q ss_pred ccCCCcCCEEEccCCCCc-cccccccCCCCCCEEECCCCCCCcCcccccCCCCCCEEeCCCCCCCCCCCcc-cccCCCCC
Q psy10956 468 IGFLKELQRLILQSNQLV-SLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQ 545 (582)
Q Consensus 468 l~~~~~L~~L~l~~n~l~-~i~~~l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~ 545 (582)
+..+++|++|++++|+++ .+|..+. ++|++|++++|+++.+|..+..+++|++|++++|++. .+|.. +..+++|+
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence 778899999999999996 5555543 7999999999999999998889999999999999976 56665 88999999
Q ss_pred EEecCCCCCC-CCc
Q psy10956 546 IMSLDNCPLS-QIP 558 (582)
Q Consensus 546 ~L~ls~n~l~-~i~ 558 (582)
+|++++|+++ ..+
T Consensus 472 ~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 472 KIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEECcCCCCcccCC
Confidence 9999999998 444
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-43 Score=379.79 Aligned_cols=429 Identities=21% Similarity=0.285 Sum_probs=361.3
Q ss_pred cCccEEEccCCCCCCCC-ccccCCCCCcEEEccCCCCcccChh-ccCCCCCCEEEccCCCCC--CcchhhhCCCCCCEEe
Q psy10956 101 ENILNLDLSKSSITHLP-PSVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLT--SLPDSLANLQQLRVLD 176 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~ 176 (582)
.+|++|++++|.++.++ ..+..+++|++|++++|.++.++.. ++.+++|++|++++|.++ .+|..++++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 57999999999999776 5799999999999999999977655 999999999999999998 4567899999999999
Q ss_pred CCCCC-CCccc-hhhhccccccEeecccCcCcc-cCccccCCCCCCEEEccCCcCcccCccc-cCCCCccEEeccCccCc
Q psy10956 177 LRHNK-LNELP-MVVYKLTSLKILYLRFNRIKT-VHPDIQYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLE 252 (582)
Q Consensus 177 L~~n~-l~~l~-~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~i~~~l-~~l~~L~~L~l~~n~l~ 252 (582)
+++|. +..+| ..+.++++|++|++++|.+.. .+..+..+++|++|+++.|.+..++..+ ..+++|++|++++|.++
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 99998 56776 467889999999999999984 6778999999999999999988776654 56899999999999998
Q ss_pred ccC---c-cccCCCCCcEEeCCCCCCC-----CcchhhcCCCCCcEEEccCCcCCcCC-------ccccCCCCCCEEEec
Q psy10956 253 ELP---K-EIGNCTMLVTLDLQHNELV-----NIPDMLGNLINLTRLRLSYNRLESVP-------ETLSKCVHLNEFNVE 316 (582)
Q Consensus 253 ~l~---~-~l~~~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~l~~n~l~~~~-------~~l~~~~~L~~L~l~ 316 (582)
.++ . ....+++|++|++++|.+. .++..+..+++|+.+++++|.+.+++ ..+..+.+++.+++.
T Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289 (549)
T ss_dssp TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence 642 2 2345789999999999887 23455678899999999999876542 234677899999999
Q ss_pred CCCCCCCCh-----hhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCC-C--hhhhhcCCCCCEEecc
Q psy10956 317 GCALSSLPD-----GLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI-P--YGIFSRAKNLSKVNMK 388 (582)
Q Consensus 317 ~~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i-~--~~~~~~~~~L~~L~l~ 388 (582)
++.+..... ..+....+|+++++++|.+..++...+..+++|+.|++++|.+... + ...+..+++|+.|+++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence 887654321 1233457899999999998866544345688999999999999843 2 2235678999999999
Q ss_pred CCcCCccc---ccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCc
Q psy10956 389 DNLLTSLP---LDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLP 465 (582)
Q Consensus 389 ~n~l~~l~---~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~ 465 (582)
+|.+++++ ..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++..+. ++|+.|++++|+++.++
T Consensus 370 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp TSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC
T ss_pred CCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhc
Confidence 99998865 35788999999999999999999888899999999999999998876553 68999999999999765
Q ss_pred ccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCc-ccccCCCCCCEEeCCCCCCCCCCC
Q psy10956 466 NEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIP-EEIGTLENLHTLYLNDNTCLNNIP 535 (582)
Q Consensus 466 ~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~-~~~~~l~~L~~L~l~~n~~~~~~~ 535 (582)
..+++|++|++++|+++.+|. ...+++|++|++++|+++.++ ..+..+++|++|++++|++.+..|
T Consensus 448 ---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 ---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 578999999999999999987 467899999999999999764 458999999999999999988766
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=361.31 Aligned_cols=425 Identities=19% Similarity=0.254 Sum_probs=351.9
Q ss_pred cCccEEEccCCCCCCCC-ccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCC
Q psy10956 101 ENILNLDLSKSSITHLP-PSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~ 178 (582)
.++++|++++|.++.++ ..+..+++|++|++++|.++.+ |..++.+++|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 56999999999999887 4799999999999999999966 77899999999999999999999877 89999999999
Q ss_pred CCCCCc--cchhhhccccccEeecccCcCcccCccccCCCCC--CEEEccCCcC--c-ccCccccCCC-CccEEeccCcc
Q psy10956 179 HNKLNE--LPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNL--SMLSMRDNKI--R-ELPPELGELK-NLVTLDLAHNH 250 (582)
Q Consensus 179 ~n~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~-~i~~~l~~l~-~L~~L~l~~n~ 250 (582)
+|.++. +|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ . ..|..+..+. ....+++++|.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 999985 67889999999999999999886 356778888 9999999998 4 5566666654 33456777777
Q ss_pred Cc-ccC-ccccCCCCCcEEeCCCCC-------CCCcchhhcCCCCCcEEEccCCcCCc-----CCccccCCCCCCEEEec
Q psy10956 251 LE-ELP-KEIGNCTMLVTLDLQHNE-------LVNIPDMLGNLINLTRLRLSYNRLES-----VPETLSKCVHLNEFNVE 316 (582)
Q Consensus 251 l~-~l~-~~l~~~~~L~~L~l~~n~-------l~~i~~~~~~~~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~ 316 (582)
+. .++ ..+..+++|+.+++++|. +.+....+..+++|+.|++++|.+++ ++... ..++|++|+++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~ 255 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSIS 255 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh-hhCcccEEEee
Confidence 66 333 356788999999999986 33333468889999999999987764 11111 24689999999
Q ss_pred CCCCC-CCChhhh----cCCCCCCEEEccCCcCccCCCCCCCCC---CcccEEEcCCCCCCCCChhhhhcCCCCCEEecc
Q psy10956 317 GCALS-SLPDGLL----SSLTSINNITLSRNKFTAYPSGGPTQF---TSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMK 388 (582)
Q Consensus 317 ~~~~~-~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~ 388 (582)
+|.+. .++...+ ..+++|+.+++++|.+ .++...+..+ .+++.|++++|.+..++. +..+++|++|+++
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFS 332 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECC
T ss_pred cccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeE
Confidence 99987 5665532 7789999999999887 3332222222 569999999999876542 2578999999999
Q ss_pred CCcCCc-ccccccCCCCCCEEECcCCCCCc---cchhhhCCCCCCEEECcCCCCCc-cccc-cCCCCCCCEEeCCCCCCC
Q psy10956 389 DNLLTS-LPLDLGTWVGLTELNLGTNQISK---LSEDIQNLVNLEVLVLSNNLLKK-LPSS-IGNLRKLKCLDLEENKLE 462 (582)
Q Consensus 389 ~n~l~~-l~~~~~~~~~L~~L~l~~n~l~~---~~~~l~~~~~L~~L~ls~n~l~~-i~~~-l~~~~~L~~L~L~~n~l~ 462 (582)
+|.+++ ++..+..+++|++|++++|.++. ++..+..+++|++|++++|.++. +|.. +..+++|+.|++++|+++
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 999997 68888999999999999999995 44668899999999999999996 8764 788999999999999997
Q ss_pred -CCcccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCccc-ccCCCCCCEEeCCCCCCCCCCC
Q psy10956 463 -SLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535 (582)
Q Consensus 463 -~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~~-~~~l~~L~~L~l~~n~~~~~~~ 535 (582)
.+|..+. ++|++|++++|+++.+|..+..+++|++|++++|+++.+|.. +..+++|++|++++|++.+..+
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 4454443 799999999999999998888999999999999999999876 8899999999999999887643
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.9e-41 Score=359.95 Aligned_cols=445 Identities=21% Similarity=0.267 Sum_probs=353.6
Q ss_pred CccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeCCC
Q psy10956 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRH 179 (582)
Q Consensus 102 ~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L~~ 179 (582)
..++++++++.++.+|..+. ++|++|++++|.++.++ ..+..+++|++|++++|.++.+ |..|.++++|++|++++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 35889999999999997664 88999999999999775 5789999999999999999966 67799999999999999
Q ss_pred CCCCccchhhhccccccEeecccCcCcccC--ccccCCCCCCEEEccCCcCcccCccccCCCCc--cEEeccCccC--c-
Q psy10956 180 NKLNELPMVVYKLTSLKILYLRFNRIKTVH--PDIQYLSNLSMLSMRDNKIRELPPELGELKNL--VTLDLAHNHL--E- 252 (582)
Q Consensus 180 n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L--~~L~l~~n~l--~- 252 (582)
|.++.+|.. .+++|++|++++|.+..++ ..++++++|++|++++|.+... .+..+++| ++|++++|.+ +
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccc
Confidence 999988877 8899999999999998654 6789999999999999998742 34555555 9999999988 5
Q ss_pred ccCccccCCC-CCcEEeCCCCCCCC-c-chhhcCCCCCcEEEccCCcC-----CcCCccccCCCCCCEEEecCCCCC---
Q psy10956 253 ELPKEIGNCT-MLVTLDLQHNELVN-I-PDMLGNLINLTRLRLSYNRL-----ESVPETLSKCVHLNEFNVEGCALS--- 321 (582)
Q Consensus 253 ~l~~~l~~~~-~L~~L~l~~n~l~~-i-~~~~~~~~~L~~L~l~~n~l-----~~~~~~l~~~~~L~~L~l~~~~~~--- 321 (582)
..|..+..+. ..-.+++++|.+.. + ...+..+++|+.+++++|.. .+....+..+++|+.+++.++.+.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 4455555543 12255778887763 3 23456788899999998852 223345677888888888877654
Q ss_pred --CCChhhhcCCCCCCEEEccCCcCccCCCCCC-----CCCCcccEEEcCCCCCCCCChhhhh---cCCCCCEEeccCCc
Q psy10956 322 --SLPDGLLSSLTSINNITLSRNKFTAYPSGGP-----TQFTSVYSINFEHNQIDKIPYGIFS---RAKNLSKVNMKDNL 391 (582)
Q Consensus 322 --~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~~~i~~i~~~~~~---~~~~L~~L~l~~n~ 391 (582)
.++.. ...++|++|++++|.+++..+..+ ..++.|..+++..+.+ .++...+. ...+|+.|++++|.
T Consensus 266 ~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 266 SVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHh--hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCC
Confidence 22221 234589999999999886555444 5667777777777776 56643332 23679999999998
Q ss_pred CCcccccccCCCCCCEEECcCCCCCc-cchhhhCCCCCCEEECcCCCCCcc---ccccCCCCCCCEEeCCCCCCCC-Ccc
Q psy10956 392 LTSLPLDLGTWVGLTELNLGTNQISK-LSEDIQNLVNLEVLVLSNNLLKKL---PSSIGNLRKLKCLDLEENKLES-LPN 466 (582)
Q Consensus 392 l~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~ls~n~l~~i---~~~l~~~~~L~~L~L~~n~l~~-l~~ 466 (582)
+...+. ...+++|++|++++|.++. ++..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.++. +|.
T Consensus 343 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 343 FIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 876542 2678899999999999995 677789999999999999999865 4568899999999999999996 776
Q ss_pred c-ccCCCcCCEEEccCCCCc-cccccccCCCCCCEEECCCCCCCcCcccccCCCCCCEEeCCCCCCCCCCCcc-cccCCC
Q psy10956 467 E-IGFLKELQRLILQSNQLV-SLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFE-LALCSN 543 (582)
Q Consensus 467 ~-l~~~~~L~~L~l~~n~l~-~i~~~l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~ 543 (582)
. +..+++|++|++++|+++ .+|..+. ++|++|++++|+++.+|..+..+++|++|++++|.+. .+|.. +..+++
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 498 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS 498 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence 4 778899999999999996 4454443 7899999999999999988889999999999999976 56665 889999
Q ss_pred CCEEecCCCCCC-CCcH
Q psy10956 544 LQIMSLDNCPLS-QIPS 559 (582)
Q Consensus 544 L~~L~ls~n~l~-~i~~ 559 (582)
|+.|++++|++. ..+.
T Consensus 499 L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCCEECCSCCBCCCHHH
T ss_pred CCEEEecCCCcCCCcch
Confidence 999999999998 5553
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-39 Score=355.10 Aligned_cols=449 Identities=22% Similarity=0.250 Sum_probs=342.2
Q ss_pred cCccEEEccCCCCCCCCc-cccCCCCCcEEEccCCCCcccCh-hccCCCCCCEEEccCCCCCCcch-hhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L 177 (582)
.++++|||++|.|+.+|+ +|.++++|++|+|++|.++.+++ +|..+++|++|+|++|+++.+|. .|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 469999999999999875 79999999999999999998754 68999999999999999998874 6899999999999
Q ss_pred CCCCCCccchh-hhccccccEeecccCcCcc--cCccccCCCCCCEEEccCCcCcccC-ccccCCCC----ccEEeccCc
Q psy10956 178 RHNKLNELPMV-VYKLTSLKILYLRFNRIKT--VHPDIQYLSNLSMLSMRDNKIRELP-PELGELKN----LVTLDLAHN 249 (582)
Q Consensus 178 ~~n~l~~l~~~-~~~~~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~i~-~~l~~l~~----L~~L~l~~n 249 (582)
++|+++.++.. ++++++|++|++++|.+.. .+..++.+++|++|++++|.++.++ ..+..+.+ ...++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 99999988764 6789999999999999984 4677899999999999999998654 34443333 346788888
Q ss_pred cCcccCccccCCCCCcEEeCCCCCCC--CcchhhcCCCCCc---------------------------------------
Q psy10956 250 HLEELPKEIGNCTMLVTLDLQHNELV--NIPDMLGNLINLT--------------------------------------- 288 (582)
Q Consensus 250 ~l~~l~~~l~~~~~L~~L~l~~n~l~--~i~~~~~~~~~L~--------------------------------------- 288 (582)
.+..++........++.+++.+|... ..+..+..+..++
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 88766655555555666666655433 1122233333333
Q ss_pred ------------------EEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCC
Q psy10956 289 ------------------RLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSG 350 (582)
Q Consensus 289 ------------------~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 350 (582)
.+.+.++.+..+ ..+.....++.|++.++.+..++.. .+..|+.+.+..+......
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~-- 365 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF-- 365 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--
T ss_pred cccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--
Confidence 333333322222 1233344555556555555544432 3445566666655544332
Q ss_pred CCCCCCcccEEEcCCCCCCC--CChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCcc--chhhhCCC
Q psy10956 351 GPTQFTSVYSINFEHNQIDK--IPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKL--SEDIQNLV 426 (582)
Q Consensus 351 ~~~~~~~L~~L~l~~~~i~~--i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~--~~~l~~~~ 426 (582)
....+++|+.++++.|.+.. .....+....+|+.+++..+....++..+..+++|+.+++..+..... ...+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 23457788899999888762 223345578889999999888887777888899999999988866532 23467889
Q ss_pred CCCEEECcCCCCCcc-ccccCCCCCCCEEeCCCCCCC--CCcccccCCCcCCEEEccCCCCccc-cccccCCCCCCEEEC
Q psy10956 427 NLEVLVLSNNLLKKL-PSSIGNLRKLKCLDLEENKLE--SLPNEIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSV 502 (582)
Q Consensus 427 ~L~~L~ls~n~l~~i-~~~l~~~~~L~~L~L~~n~l~--~l~~~l~~~~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~l 502 (582)
+++.++++.|.+..+ +..+..++.|+.|++++|.+. ..|..+..+++|++|++++|+++.+ |..+.++++|++|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 999999999999844 566788999999999999755 3567788999999999999999966 578899999999999
Q ss_pred CCCCCCcCc-ccccCCCCCCEEeCCCCCCCCCCCcccccC-CCCCEEecCCCCCC
Q psy10956 503 GENNLQSIP-EEIGTLENLHTLYLNDNTCLNNIPFELALC-SNLQIMSLDNCPLS 555 (582)
Q Consensus 503 s~n~l~~i~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~ls~n~l~ 555 (582)
++|+++.++ ..+..+++|++|++++|++.+..|..+..+ ++|+.|++++|+++
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999774 568899999999999999988888888887 68999999999997
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-40 Score=346.26 Aligned_cols=402 Identities=26% Similarity=0.337 Sum_probs=257.2
Q ss_pred cCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCc-ccChhccCCCCC-------------CEEEccCCCCCCcchhh
Q psy10956 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLA-SLPSQIGYVTNL-------------TCLGLAENSLTSLPDSL 166 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L-------------~~L~l~~n~l~~lp~~l 166 (582)
.++++|++++|.++.+|.+++++++|++|++++|.+. .+|..++.+++| ++|++++|.++.+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~- 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL- 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC-
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC-
Confidence 5699999999999999999999999999999999998 889999888765 9999999998888763
Q ss_pred hCCCCCCEEeCCCCCCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEec
Q psy10956 167 ANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDL 246 (582)
Q Consensus 167 ~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l 246 (582)
.++|++|++++|.++.+|.. .++|++|++++|.+..++.. .++|++|++++|.++.+| .++.+++|++|++
T Consensus 90 --~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 --PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp --CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred --cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 46899999999999888753 47899999999988876532 268999999999988887 5888999999999
Q ss_pred cCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChh
Q psy10956 247 AHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDG 326 (582)
Q Consensus 247 ~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 326 (582)
++|.++.+|..+ ++|++|++++|.+..+| .++.+++|++|++++|.++++|... ++|++|++++|.+..++.
T Consensus 161 ~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~- 232 (454)
T 1jl5_A 161 DNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE- 232 (454)
T ss_dssp CSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-
T ss_pred CCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-
Confidence 999888877644 58899999999888887 5888899999999999888876543 588889999988887774
Q ss_pred hhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCC
Q psy10956 327 LLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLT 406 (582)
Q Consensus 327 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~ 406 (582)
+..+++|++|++++|.+++++. ..++|+.|++++|.+..++. ..++|+.|++++|.+++++.. .++|+
T Consensus 233 -~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~~~---~~~L~ 300 (454)
T 1jl5_A 233 -LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSEL---PPNLY 300 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEESCC---CTTCC
T ss_pred -cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCc----ccCcCCEEECcCCccCcccCc---CCcCC
Confidence 7788888899988888877543 23678888888888877654 246788888888877765432 25777
Q ss_pred EEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCcc
Q psy10956 407 ELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVS 486 (582)
Q Consensus 407 ~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~ 486 (582)
.|++++|.++.++. ..++|++|++++|.++.+|.. +++|+.|++++|.++.+|. .+++|++|++++|+++.
T Consensus 301 ~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 301 YLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS
T ss_pred EEECcCCcCCcccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCc
Confidence 88888887776542 124777888887777776653 4677778887777777766 46777777777777765
Q ss_pred ccccccCCCCCCEEECCCCCC-CcCcccccCCCCCCEEeCCCCCCCC--CCCcccccCCCCCEEecCCCCCC
Q psy10956 487 LPRAIGHLTNLSYLSVGENNL-QSIPEEIGTLENLHTLYLNDNTCLN--NIPFELALCSNLQIMSLDNCPLS 555 (582)
Q Consensus 487 i~~~l~~~~~L~~L~ls~n~l-~~i~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~ls~n~l~ 555 (582)
+|..-. .+..|. .|.+ ..+|.. +++|++|++++|++.+ .+| ++++.|.+.+|.+.
T Consensus 372 l~~ip~---~l~~L~--~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 372 FPDIPE---SVEDLR--MNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVV 429 (454)
T ss_dssp CCCCCT---TCCEEE--CCC----------------------------------------------------
T ss_pred CCCChH---HHHhhh--hcccccccccc---cCcCCEEECCCCcCCccccch------hhHhheeCcCcccC
Confidence 332111 122222 2333 244432 4789999999998776 454 35677788888776
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.9e-41 Score=346.60 Aligned_cols=388 Identities=27% Similarity=0.346 Sum_probs=245.8
Q ss_pred CCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCC-CcchhhhCCCCC-------------CEEeCCCCCCCccch
Q psy10956 122 KLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT-SLPDSLANLQQL-------------RVLDLRHNKLNELPM 187 (582)
Q Consensus 122 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L-------------~~L~L~~n~l~~l~~ 187 (582)
..++|++|++++|.+..+|..++.+++|++|++++|.+. .+|..++++++| ++|++++|.++.+|.
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 468899999999999999999999999999999999988 788888888765 888888888887775
Q ss_pred hhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcEE
Q psy10956 188 VVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTL 267 (582)
Q Consensus 188 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L 267 (582)
. .++|++|++++|.++.+|.. .++|++|++++|.++.++.. .++|++|++++|.++.+| .++.+++|++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred C---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 3 36788888888888876643 36788888888888766542 267888888888888877 57888888888
Q ss_pred eCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccC
Q psy10956 268 DLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAY 347 (582)
Q Consensus 268 ~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 347 (582)
++++|.++++|... ++|++|++++|.++++| .+..+++|++|++++|.+..++.. .++|++|++++|.++.+
T Consensus 159 ~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 159 DVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEEL 230 (454)
T ss_dssp ECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSC
T ss_pred ECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcc
Confidence 88888888776543 47888888888888776 577888888888888887776542 25788888888877755
Q ss_pred CCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccchhhhCCCC
Q psy10956 348 PSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVN 427 (582)
Q Consensus 348 ~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~ 427 (582)
+ .+..+++|+.+++++|.+..++. ..++|+.|++++|.++++|.. .++|++|++++|.++.++.. .++
T Consensus 231 p--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~~ 298 (454)
T 1jl5_A 231 P--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---PPN 298 (454)
T ss_dssp C--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---CTT
T ss_pred c--ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc---CCc
Confidence 4 36677788888888887776653 246788888888877776643 36778888888877765421 257
Q ss_pred CCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCC
Q psy10956 428 LEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNL 507 (582)
Q Consensus 428 L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l 507 (582)
|++|++++|.++.++.. .++|+.|++++|+++.+|.. +++|++|++++|+++.+|. .+++|++|++++|++
T Consensus 299 L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 299 LYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred CCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCC
Confidence 77888888777765421 24777888888777776654 4777788888887777766 367778888888877
Q ss_pred CcCcccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEecCCCCCCC
Q psy10956 508 QSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQ 556 (582)
Q Consensus 508 ~~i~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~ 556 (582)
+.+|.... .+..| +.|.+.+.+|. .+++|+.|++++|+++.
T Consensus 370 ~~l~~ip~---~l~~L--~~n~~~~~i~~---~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 370 REFPDIPE---SVEDL--RMNSHLAEVPE---LPQNLKQLHVETNPLRE 410 (454)
T ss_dssp SSCCCCCT---TCCEE--ECCC---------------------------
T ss_pred CcCCCChH---HHHhh--hhccccccccc---ccCcCCEEECCCCcCCc
Confidence 76432211 12222 23555666664 25899999999999984
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-38 Score=345.30 Aligned_cols=459 Identities=21% Similarity=0.257 Sum_probs=356.3
Q ss_pred cEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCcch-hhhCCCCCCEEeCCCCC
Q psy10956 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRVLDLRHNK 181 (582)
Q Consensus 104 ~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L~~n~ 181 (582)
...+.++.+++.+|..+. +.+++|+|++|.|+.+| ..|.++++|++|+|++|+++.+|. +|.++++|++|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 456888888999997654 47999999999999886 469999999999999999998864 69999999999999999
Q ss_pred CCccchh-hhccccccEeecccCcCcccCc-cccCCCCCCEEEccCCcCc--ccCccccCCCCccEEeccCccCcccC-c
Q psy10956 182 LNELPMV-VYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSMLSMRDNKIR--ELPPELGELKNLVTLDLAHNHLEELP-K 256 (582)
Q Consensus 182 l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~--~i~~~l~~l~~L~~L~l~~n~l~~l~-~ 256 (582)
++.+|.. +.++++|++|++++|+++.+++ .++++++|++|++++|.+. .+|..++.+++|++|++++|.++.++ .
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9988764 6789999999999999998876 4899999999999999998 45677899999999999999998654 3
Q ss_pred cccCCC----CCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCc--CCccccCC-----------------------
Q psy10956 257 EIGNCT----MLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLES--VPETLSKC----------------------- 307 (582)
Q Consensus 257 ~l~~~~----~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~--~~~~l~~~----------------------- 307 (582)
.+..+. ....++++.|.+..++........++.+++.+|.... .+..+..+
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 444333 3457899999999877666666677788887764321 11111111
Q ss_pred ----------------------------------CCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCC
Q psy10956 308 ----------------------------------VHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPT 353 (582)
Q Consensus 308 ----------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 353 (582)
.+++.+.+.++.+..+.. +.....++.|++.++.+..... .
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~---~ 346 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT---L 346 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCC---C
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCc---c
Confidence 233333333333333322 3344566677777666655433 2
Q ss_pred CCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCc---ccccccCCCCCCEEECcCCCCCccchhhhCCCCCCE
Q psy10956 354 QFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTS---LPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEV 430 (582)
Q Consensus 354 ~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~---l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~ 430 (582)
.+..++.+.+..+....... +..+++|+.++++.|.+.. .+.......+|+.+++..+....++..+..+++|+.
T Consensus 347 ~l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 424 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEH 424 (635)
T ss_dssp BCTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCE
T ss_pred cchhhhhcccccccCCCCcc--cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccc
Confidence 34566777777766654332 2357889999999988764 344556778899999998888777777788999999
Q ss_pred EECcCCCCCcc--ccccCCCCCCCEEeCCCCCCCC-CcccccCCCcCCEEEccCCCCc--cccccccCCCCCCEEECCCC
Q psy10956 431 LVLSNNLLKKL--PSSIGNLRKLKCLDLEENKLES-LPNEIGFLKELQRLILQSNQLV--SLPRAIGHLTNLSYLSVGEN 505 (582)
Q Consensus 431 L~ls~n~l~~i--~~~l~~~~~L~~L~L~~n~l~~-l~~~l~~~~~L~~L~l~~n~l~--~i~~~l~~~~~L~~L~ls~n 505 (582)
++++++..... +..+..+++++.+++++|.+.. .+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus 425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N 504 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504 (635)
T ss_dssp EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence 99998876633 3457789999999999999884 4556788999999999999754 45788999999999999999
Q ss_pred CCCcC-cccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEecCCCCCCCCcHHhHcCC-hHHHHH
Q psy10956 506 NLQSI-PEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGG-PSLIIR 571 (582)
Q Consensus 506 ~l~~i-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~i~~~~~~~~-~~l~~~ 571 (582)
+++.+ |..+.++++|++|+|++|.+.+..+..+..+++|+.|++++|.++.+++..|..+ ++|+.+
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 99976 6778999999999999999888778889999999999999999998887777766 456443
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-38 Score=340.99 Aligned_cols=425 Identities=20% Similarity=0.235 Sum_probs=338.8
Q ss_pred cCccEEEccCCCCCCCC-ccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCC
Q psy10956 101 ENILNLDLSKSSITHLP-PSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~ 178 (582)
.++++|++++|.++.++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 56999999999999887 4799999999999999999966 67799999999999999999999877 89999999999
Q ss_pred CCCCCcc--chhhhccccccEeecccCcCcccCccccCCCCC--CEEEccCCcC--c-ccCccccCCC-CccEEeccCcc
Q psy10956 179 HNKLNEL--PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNL--SMLSMRDNKI--R-ELPPELGELK-NLVTLDLAHNH 250 (582)
Q Consensus 179 ~n~l~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~-~i~~~l~~l~-~L~~L~l~~n~ 250 (582)
+|+++.+ |..++++++|++|++++|.+... .+..+++| ++|++++|.+ . ..|..+..+. ..-.+++++|.
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 9999965 47888999999999999998852 45566666 9999999998 5 4556666554 12255777777
Q ss_pred Ccc-cCc-cccCCCCCcEEeCCCCCCC-----CcchhhcCCCCCcEEEccCCcCCc-----CCccccCCCCCCEEEecCC
Q psy10956 251 LEE-LPK-EIGNCTMLVTLDLQHNELV-----NIPDMLGNLINLTRLRLSYNRLES-----VPETLSKCVHLNEFNVEGC 318 (582)
Q Consensus 251 l~~-l~~-~l~~~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~~ 318 (582)
+.. ++. .+..+++|+.+++++|... .....+..+++|+.+++.++.+.+ ++... ..++|++|++++|
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n 286 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNL 286 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEecc
Confidence 663 332 4567889999999998633 334567888999999888887663 22222 3458999999999
Q ss_pred CCC-CCChhhh----cCCCCCCEEEccCCcCccCCCCCCC---CCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCC
Q psy10956 319 ALS-SLPDGLL----SSLTSINNITLSRNKFTAYPSGGPT---QFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390 (582)
Q Consensus 319 ~~~-~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n 390 (582)
.+. .+|...+ ..++.|+.+++..+.+ .++...+. ...+++++++++|.+..+.. ...+++|+.|++++|
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQN 363 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSS
T ss_pred Eeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCC
Confidence 887 6665533 4455555555555554 21111111 12468999999998875542 257899999999999
Q ss_pred cCCc-ccccccCCCCCCEEECcCCCCCccc---hhhhCCCCCCEEECcCCCCCc-ccc-ccCCCCCCCEEeCCCCCCC-C
Q psy10956 391 LLTS-LPLDLGTWVGLTELNLGTNQISKLS---EDIQNLVNLEVLVLSNNLLKK-LPS-SIGNLRKLKCLDLEENKLE-S 463 (582)
Q Consensus 391 ~l~~-l~~~~~~~~~L~~L~l~~n~l~~~~---~~l~~~~~L~~L~ls~n~l~~-i~~-~l~~~~~L~~L~L~~n~l~-~ 463 (582)
.+++ ++..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++. +|. .+..+++|+.|++++|+++ .
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 9987 6788899999999999999998654 457889999999999999986 775 4778999999999999997 3
Q ss_pred CcccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCccc-ccCCCCCCEEeCCCCCCCCCCC
Q psy10956 464 LPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDNTCLNNIP 535 (582)
Q Consensus 464 l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~~-~~~l~~L~~L~l~~n~~~~~~~ 535 (582)
+|..+. ++|++|++++|+++.+|..+..+++|++|++++|+++.+|.. +..+++|+.|++++|++.+..+
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 444333 799999999999999998888999999999999999999887 8899999999999999887644
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9e-37 Score=319.60 Aligned_cols=345 Identities=26% Similarity=0.408 Sum_probs=180.4
Q ss_pred cCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCC
Q psy10956 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n 180 (582)
.+++.|+++++.++.+|. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++. ++++++|++|++++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 356667777776666653 5666677777777776666554 6666677777777776666654 666667777777766
Q ss_pred CCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccC
Q psy10956 181 KLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260 (582)
Q Consensus 181 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~ 260 (582)
.++.++. +..+++|++|++++|.+..++ .+..+++|++|+++ +.+..++ .+..+++|++|++++|.+..++ .+..
T Consensus 123 ~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~ 197 (466)
T 1o6v_A 123 QITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAK 197 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGG
T ss_pred CCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCch-hhccCCCCCEEECcCCcCCCCh-hhcc
Confidence 6666554 556666666666666665543 35566666666664 2333332 2555555666666655555442 3445
Q ss_pred CCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEcc
Q psy10956 261 CTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340 (582)
Q Consensus 261 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 340 (582)
+++|++|++++|.+..++. ++.+++|+.|++++|.++++ ..+..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 198 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECC
Confidence 5555555555555554433 44455555555555555544 234444455555555544444333 3334444444444
Q ss_pred CCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccch
Q psy10956 341 RNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSE 420 (582)
Q Consensus 341 ~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~ 420 (582)
+|.+++ ++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|.++.++.
T Consensus 274 ~n~l~~------------------------~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 274 ANQISN------------------------ISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SSCCCC------------------------CGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG
T ss_pred CCccCc------------------------ccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh
Confidence 443333 222 3334444444444444443322 3344444444444444443322
Q ss_pred hhhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCccc
Q psy10956 421 DIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSL 487 (582)
Q Consensus 421 ~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i 487 (582)
+..+++|++|++++|.++.++ .+..+++|+.|++++|+++.++. +..+++|++|++++|.++.+
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred -hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCC
Confidence 334444444444444444432 34444444444444444443332 44444444444444444433
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-36 Score=317.85 Aligned_cols=348 Identities=26% Similarity=0.426 Sum_probs=278.2
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCccccccchHHHhhhhccCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccCh
Q psy10956 62 KKTVTVKHPESNKPKPTTKKKEPIQADLNIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPS 141 (582)
Q Consensus 62 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~ 141 (582)
.++..+++.+..+.. ++ .+.. ..+|++|++++|.++.+++ +..+++|++|++++|.+..++.
T Consensus 46 ~~l~~L~l~~~~i~~--------------l~-~~~~--l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS--------------ID-GVEY--LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HTCCEEECCSSCCCC--------------CT-TGGG--CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred ccccEEecCCCCCcc--------------Cc-chhh--hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh
Confidence 577788877654432 11 1222 3579999999999999887 9999999999999999998776
Q ss_pred hccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccchhhhccccccEeecccCcCcccCccccCCCCCCEE
Q psy10956 142 QIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSML 221 (582)
Q Consensus 142 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 221 (582)
++.+++|++|++++|.++.++. +.++++|++|++++|.+..++. +..+++|++|+++ +.+...+ .+..+++|++|
T Consensus 108 -~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L 182 (466)
T 1o6v_A 108 -LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDLK-PLANLTTLERL 182 (466)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEE
T ss_pred -hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecC-CcccCch-hhccCCCCCEE
Confidence 9999999999999999998875 9999999999999999998774 6789999999997 4555544 38999999999
Q ss_pred EccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCC
Q psy10956 222 SMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP 301 (582)
Q Consensus 222 ~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~ 301 (582)
++++|.+..++ .+..+++|++|++++|.+..++. ++.+++|++|++++|.+..++ .+..+++|+.|++++|.+++++
T Consensus 183 ~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 183 DISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp ECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred ECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch
Confidence 99999998774 48899999999999999997754 778999999999999999885 5889999999999999999875
Q ss_pred ccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCC
Q psy10956 302 ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKN 381 (582)
Q Consensus 302 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~ 381 (582)
. +..+++|++|++++|.+..++. +..+++|++|++++|.+++..+ +..+++
T Consensus 260 ~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------------------------~~~l~~ 310 (466)
T 1o6v_A 260 P-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--------------------------ISNLKN 310 (466)
T ss_dssp G-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--------------------------GGGCTT
T ss_pred h-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--------------------------hcCCCC
Confidence 5 8899999999999999998776 7788888888888887766432 334555
Q ss_pred CCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCC
Q psy10956 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKL 461 (582)
Q Consensus 382 L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l 461 (582)
|+.|++++|.+++++. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 311 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred CCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence 6666666665555432 45566677777777766655 346667777777777777775544 67777777777777777
Q ss_pred CCCccc
Q psy10956 462 ESLPNE 467 (582)
Q Consensus 462 ~~l~~~ 467 (582)
+.+|..
T Consensus 388 ~~~p~~ 393 (466)
T 1o6v_A 388 TNAPVN 393 (466)
T ss_dssp ECCCBC
T ss_pred cCCchh
Confidence 765543
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-36 Score=314.96 Aligned_cols=357 Identities=21% Similarity=0.271 Sum_probs=272.1
Q ss_pred CccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccchhhhcccccc
Q psy10956 117 PPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLK 196 (582)
Q Consensus 117 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~ 196 (582)
+..++++++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++|.++.++ ++.+++|+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 346788999999999999999887 6889999999999999999886 889999999999999999876 67899999
Q ss_pred EeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCcc-CcccCccccCCCCCcEEeCCCCCCC
Q psy10956 197 ILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNH-LEELPKEIGNCTMLVTLDLQHNELV 275 (582)
Q Consensus 197 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~-l~~l~~~l~~~~~L~~L~l~~n~l~ 275 (582)
+|++++|.++.++ ++.+++|++|++++|.++.++ ++.+++|++|++++|. +..+ .++.+++|++|++++|.++
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 9999999998874 889999999999999998773 7888999999999984 4455 4678889999999999998
Q ss_pred CcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCC
Q psy10956 276 NIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQF 355 (582)
Q Consensus 276 ~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 355 (582)
.+| +..+++|+.|++++|.++++ .+..+++|++|++++|.+..++ +..+++|++|++++|.+++.+ ...+
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l 253 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTL 253 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred eec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---HHHC
Confidence 887 78888999999999988887 3778888888888888888876 667888888888888888764 3455
Q ss_pred CcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCc-ccccccCCCCCCEEECcCCCCC-ccchhhhCCCCCCEEEC
Q psy10956 356 TSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTS-LPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEVLVL 433 (582)
Q Consensus 356 ~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l 433 (582)
++|+.++++.+ +|+.+++++|.+.+ +| +..+++|+.|++++|... .++. ...+|+.|++
T Consensus 254 ~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l 314 (457)
T 3bz5_A 254 SKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDL 314 (457)
T ss_dssp TTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC
T ss_pred CCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEech
Confidence 66777776554 34555566665442 33 345667777777766543 2321 2233443333
Q ss_pred cCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCccc
Q psy10956 434 SNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEE 513 (582)
Q Consensus 434 s~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~~ 513 (582)
+++++|+.|++++|+++.++ ++.+++|++|++++|+++.+ +.|..|++++|.+.+.
T Consensus 315 ------------~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l-------~~L~~L~l~~n~l~g~--- 370 (457)
T 3bz5_A 315 ------------SQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF-------SSVGKIPALNNNFEAE--- 370 (457)
T ss_dssp ------------TTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBC-------TTGGGSSGGGTSEEEE---
T ss_pred ------------hhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCc-------cccccccccCCcEEec---
Confidence 34467788888888877763 67777888888888877653 3456666777776644
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccc
Q psy10956 514 IGTLENLHTLYLNDNTCLNNIPFEL 538 (582)
Q Consensus 514 ~~~l~~L~~L~l~~n~~~~~~~~~l 538 (582)
..+..|+.+++++|.+.|.+|..+
T Consensus 371 -~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 371 -GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp -EEEEECCCBCCBTTBEEEECCTTC
T ss_pred -ceeeecCccccccCcEEEEcChhH
Confidence 234567777888888888777654
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.3e-36 Score=310.72 Aligned_cols=349 Identities=25% Similarity=0.341 Sum_probs=296.5
Q ss_pred cCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCC
Q psy10956 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n 180 (582)
.++++|++++|.++.+| .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++++++|++|++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence 57999999999999987 6899999999999999999886 889999999999999999886 899999999999999
Q ss_pred CCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCc-ccCccccCCCCccEEeccCccCcccCcccc
Q psy10956 181 KLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLEELPKEIG 259 (582)
Q Consensus 181 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~ 259 (582)
+++.++ +..+++|++|++++|.++.++ ++.+++|++|++++|... .+ .++.+++|++|++++|.++.+| ++
T Consensus 117 ~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~ 188 (457)
T 3bz5_A 117 KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VS 188 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CT
T ss_pred cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cc
Confidence 999886 778999999999999999873 889999999999999544 55 4788999999999999999986 78
Q ss_pred CCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEc
Q psy10956 260 NCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITL 339 (582)
Q Consensus 260 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 339 (582)
.+++|++|++++|.++.++ ++.+++|+.|++++|+++++| +..+++|+.|++++|.+..++ ...+++|+.+++
T Consensus 189 ~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l 261 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHC 261 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEec
Confidence 8999999999999999874 888999999999999999987 889999999999999999876 456789999998
Q ss_pred cCCcCccCCCCCCCCCCcccEEEcCCCCCC-CCChhhhhcCCCCCEEeccCCcCCc-ccccccCCCCCCEEECcCCCCCc
Q psy10956 340 SRNKFTAYPSGGPTQFTSVYSINFEHNQID-KIPYGIFSRAKNLSKVNMKDNLLTS-LPLDLGTWVGLTELNLGTNQISK 417 (582)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~-~i~~~~~~~~~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~l~~n~l~~ 417 (582)
+.+. |+.+++++|.+. .++ +..+++|+.|++++|...+ +|. ..++|+.+++++
T Consensus 262 ~~n~--------------L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~----- 316 (457)
T 3bz5_A 262 IQTD--------------LLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ----- 316 (457)
T ss_dssp TTCC--------------CSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT-----
T ss_pred cCCC--------------CCEEECCCCccCCccc---ccccccCCEEECCCCcccceecc---CCCcceEechhh-----
Confidence 8764 445566666644 444 3568999999999997553 442 334555555544
Q ss_pred cchhhhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCccccccccCCCCC
Q psy10956 418 LSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNL 497 (582)
Q Consensus 418 ~~~~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L 497 (582)
+++|++|++++|+++.++ ++.+++|+.|++++|+++++ +.|..|.+++|.+...+ .+..|
T Consensus 317 -------~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l-------~~L~~L~l~~n~l~g~~----~~~~l 376 (457)
T 3bz5_A 317 -------NPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF-------SSVGKIPALNNNFEAEG----QTITM 376 (457)
T ss_dssp -------CTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBC-------TTGGGSSGGGTSEEEEE----EEEEC
T ss_pred -------cccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCc-------cccccccccCCcEEecc----eeeec
Confidence 478999999999999874 89999999999999998875 45667788888876442 45668
Q ss_pred CEEECCCCCCC-cCcccc
Q psy10956 498 SYLSVGENNLQ-SIPEEI 514 (582)
Q Consensus 498 ~~L~ls~n~l~-~i~~~~ 514 (582)
..+++++|+++ .+|..+
T Consensus 377 ~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCBCCBTTBEEEECCTTC
T ss_pred CccccccCcEEEEcChhH
Confidence 88999999998 677644
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.3e-35 Score=306.42 Aligned_cols=378 Identities=20% Similarity=0.250 Sum_probs=206.3
Q ss_pred CCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCcc-chhhhccccccEeecccCcCc-cc-CccccCCCCCCEEEccC
Q psy10956 149 LTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIK-TV-HPDIQYLSNLSMLSMRD 225 (582)
Q Consensus 149 L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~l~~~~~~-~~-~~~l~~l~~L~~L~l~~ 225 (582)
-+.++.+++.++.+|. + .++|++|++++|.++.+ |..+.++++|++|++++|.+. .+ +..+..+++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3467777777877776 2 26788888888888755 556677888888888888775 34 34567777788888877
Q ss_pred CcCccc-CccccCCCCccEEeccCccCcc-cCcc--ccCCCCCcEEeCCCCCCCCc-chh-hcCCCCCcEEEccCCcCCc
Q psy10956 226 NKIREL-PPELGELKNLVTLDLAHNHLEE-LPKE--IGNCTMLVTLDLQHNELVNI-PDM-LGNLINLTRLRLSYNRLES 299 (582)
Q Consensus 226 n~l~~i-~~~l~~l~~L~~L~l~~n~l~~-l~~~--l~~~~~L~~L~l~~n~l~~i-~~~-~~~~~~L~~L~l~~n~l~~ 299 (582)
|.+..+ |..++.+++|++|++++|.++. ++.. ++.+++|++|++++|.+..+ |.. +..+++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 777744 5567777777777777777763 3332 66677777777777777754 433 6677777777777777665
Q ss_pred C-CccccCC--CCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhh
Q psy10956 300 V-PETLSKC--VHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIF 376 (582)
Q Consensus 300 ~-~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~ 376 (582)
+ +..+..+ .+|+.+++++|.+..++...+.. .....+..+++|++|++++|.+.......+
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred cChhhhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhh
Confidence 3 3333333 45555666655555444321110 000112234556666666666653322222
Q ss_pred hc---CCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCc-cccccCCCCCCC
Q psy10956 377 SR---AKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKK-LPSSIGNLRKLK 452 (582)
Q Consensus 377 ~~---~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~-i~~~l~~~~~L~ 452 (582)
.. .++|+.+++++|...........++.+. .....-...++|++|++++|.++. +|..+..+++|+
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 302 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD----------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC----------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hccccccceeeEeeccccccccccchhhhccCc----------ccccccccccCceEEEecCccccccchhhcccCCCCC
Confidence 22 2566666666664432111111100000 000000112345555555555542 234445555555
Q ss_pred EEeCCCCCCCCC-cccccCCCcCCEEEccCCCCccc-cccccCCCCCCEEECCCCCCCcC-cccccCCCCCCEEeCCCCC
Q psy10956 453 CLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNLQSI-PEEIGTLENLHTLYLNDNT 529 (582)
Q Consensus 453 ~L~L~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~ls~n~l~~i-~~~~~~l~~L~~L~l~~n~ 529 (582)
.|++++|.++.+ |..++.+++|++|++++|.++.+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 555555555532 33444555555555555555433 34445555555555555555533 4445555555555555555
Q ss_pred CCCCCCcccccCCCCCEEecCCCCCC
Q psy10956 530 CLNNIPFELALCSNLQIMSLDNCPLS 555 (582)
Q Consensus 530 ~~~~~~~~l~~l~~L~~L~ls~n~l~ 555 (582)
+.+..+..+..+++|++|++++|+++
T Consensus 383 l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 383 LKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCCHhHhccCCcccEEEccCCCcc
Confidence 44333333445555555555555555
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.3e-35 Score=304.23 Aligned_cols=364 Identities=22% Similarity=0.304 Sum_probs=220.5
Q ss_pred EEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCC-Cc-chhhhCCCCCCEEeCCCCC
Q psy10956 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLT-SL-PDSLANLQQLRVLDLRHNK 181 (582)
Q Consensus 105 ~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~-~l-p~~l~~l~~L~~L~L~~n~ 181 (582)
.++++++.++.+|. + .++|++|++++|.++.+ |..++.+++|++|++++|.+. .+ +..|.++++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 45566666666664 2 25566666666666643 555666666666666666654 33 3456666666666666666
Q ss_pred CCcc-chhhhccccccEeecccCcCcc-cCcc--ccCCCCCCEEEccCCcCccc-Ccc-ccCCCCccEEeccCccCccc-
Q psy10956 182 LNEL-PMVVYKLTSLKILYLRFNRIKT-VHPD--IQYLSNLSMLSMRDNKIREL-PPE-LGELKNLVTLDLAHNHLEEL- 254 (582)
Q Consensus 182 l~~l-~~~~~~~~~L~~L~l~~~~~~~-~~~~--l~~l~~L~~L~l~~n~l~~i-~~~-l~~l~~L~~L~l~~n~l~~l- 254 (582)
++.+ |..+.++++|++|++++|.+.. .+.. +..+++|++|++++|.+..+ |.. +..+++|++|++++|.++.+
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 6633 4455566666666666666653 2222 55666666666666666644 333 55666666666666666533
Q ss_pred CccccCC--CCCcEEeCCCCCCCCcchh---------hcCCCCCcEEEccCCcCCc-CCccccC---CCCCCEEEecCCC
Q psy10956 255 PKEIGNC--TMLVTLDLQHNELVNIPDM---------LGNLINLTRLRLSYNRLES-VPETLSK---CVHLNEFNVEGCA 319 (582)
Q Consensus 255 ~~~l~~~--~~L~~L~l~~n~l~~i~~~---------~~~~~~L~~L~l~~n~l~~-~~~~l~~---~~~L~~L~l~~~~ 319 (582)
+..+..+ .+|+.|++++|.+..++.. +..+++|++|++++|.+++ .+..+.. ..+|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 2333333 4566666666666544321 2234556666666666554 2222222 2556666666554
Q ss_pred CCCCChhhhcCCCCCCEEEccCCcCccCCCCCCC--CCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcc-c
Q psy10956 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPT--QFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL-P 396 (582)
Q Consensus 320 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l-~ 396 (582)
...... ..+.+.......+. ..++|+.+++++|.+..+....+..+++|+.|++++|.+.++ +
T Consensus 251 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 251 NMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 332110 00011111111111 124666777777777665555666777777777777777765 4
Q ss_pred ccccCCCCCCEEECcCCCCCcc-chhhhCCCCCCEEECcCCCCCcc-ccccCCCCCCCEEeCCCCCCCCCccc-ccCCCc
Q psy10956 397 LDLGTWVGLTELNLGTNQISKL-SEDIQNLVNLEVLVLSNNLLKKL-PSSIGNLRKLKCLDLEENKLESLPNE-IGFLKE 473 (582)
Q Consensus 397 ~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~ls~n~l~~i-~~~l~~~~~L~~L~L~~n~l~~l~~~-l~~~~~ 473 (582)
..+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|+++.+|.. +..+++
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 5677778888888888888755 45567788888888888888855 66788888888888888888877654 577888
Q ss_pred CCEEEccCCCCc
Q psy10956 474 LQRLILQSNQLV 485 (582)
Q Consensus 474 L~~L~l~~n~l~ 485 (582)
|++|++++|++.
T Consensus 397 L~~L~l~~N~l~ 408 (455)
T 3v47_A 397 LQKIWLHTNPWD 408 (455)
T ss_dssp CCEEECCSSCBC
T ss_pred ccEEEccCCCcc
Confidence 888888888876
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-33 Score=282.63 Aligned_cols=302 Identities=23% Similarity=0.401 Sum_probs=177.0
Q ss_pred cCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCC
Q psy10956 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n 180 (582)
+++++|+++++.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+.++++|++|++++|
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED 120 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS
T ss_pred ccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC
Confidence 456667777666666653 5666666777776666665554 666666666666666666654 4666666666666666
Q ss_pred CCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccC
Q psy10956 181 KLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260 (582)
Q Consensus 181 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~ 260 (582)
.++.++. +..+++|++|++++|......+.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..
T Consensus 121 ~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~ 197 (347)
T 4fmz_A 121 NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LAS 197 (347)
T ss_dssp CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGG
T ss_pred cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccC
Confidence 6665554 456666666666666444333345666666666666666654433 5556666666666666555533 555
Q ss_pred CCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEcc
Q psy10956 261 CTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340 (582)
Q Consensus 261 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 340 (582)
+++|+.+++++|.+..++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 198 l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVG 273 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred CCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEcc
Confidence 5666666666665555433 5555666666666665555443 555555555555555555442 14444555555555
Q ss_pred CCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECcCCCCCccc
Q psy10956 341 RNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQISKLS 419 (582)
Q Consensus 341 ~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~ 419 (582)
+|. +..++ .+..+++|+.|++++|.+... +..+..+++|++|++++|.++.++
T Consensus 274 ~n~------------------------l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 274 SNQ------------------------ISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp SSC------------------------CCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CCc------------------------cCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 544 44432 244556666666666666543 344556666666666666666554
Q ss_pred hhhhCCCCCCEEECcCCCCC
Q psy10956 420 EDIQNLVNLEVLVLSNNLLK 439 (582)
Q Consensus 420 ~~l~~~~~L~~L~ls~n~l~ 439 (582)
. +..+++|++|++++|.++
T Consensus 328 ~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 328 P-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp G-GGGCTTCSEESSSCC---
T ss_pred C-hhhhhccceeehhhhccc
Confidence 4 566677777777776654
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.4e-33 Score=280.35 Aligned_cols=306 Identities=26% Similarity=0.413 Sum_probs=237.6
Q ss_pred ccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccchhhhccccccEee
Q psy10956 120 VEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILY 199 (582)
Q Consensus 120 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~ 199 (582)
+..+++|++|+++++.+..++. +..+++|++|++++|.++.++. +.++++|++|++++|.++.++ .+..+++|++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 5678899999999999888764 7889999999999999988876 889999999999999888876 467888888888
Q ss_pred cccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcch
Q psy10956 200 LRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD 279 (582)
Q Consensus 200 l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~ 279 (582)
+++|.+..++. +..+++|++|++++|.....+..+..+++|++|++++|.+..++. +..+++|++|++++|.+..++.
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc
Confidence 88888887765 778888888888888655334457777788888888877776644 6677777777777777776655
Q ss_pred hhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCccc
Q psy10956 280 MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVY 359 (582)
Q Consensus 280 ~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 359 (582)
+..+++|+.+++++|.+++++. +..+++|++|++++|.+..++. +..+++|++|++++|
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n----------------- 253 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN----------------- 253 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-----------------
T ss_pred -ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC-----------------
Confidence 6677777777777777766543 5666666666666666665544 445555555555554
Q ss_pred EEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCc-cchhhhCCCCCCEEECcCCCC
Q psy10956 360 SINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISK-LSEDIQNLVNLEVLVLSNNLL 438 (582)
Q Consensus 360 ~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~ls~n~l 438 (582)
.+..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++. .+..+..+++|++|++++|.+
T Consensus 254 -------~l~~~~--~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 254 -------QISDIN--AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp -------CCCCCG--GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred -------ccCCCh--hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 444432 3567899999999999999875 57889999999999999985 456688999999999999999
Q ss_pred CccccccCCCCCCCEEeCCCCCCC
Q psy10956 439 KKLPSSIGNLRKLKCLDLEENKLE 462 (582)
Q Consensus 439 ~~i~~~l~~~~~L~~L~L~~n~l~ 462 (582)
+.++. +..+++|+.|++++|.++
T Consensus 324 ~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 324 TDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGG-GGGCTTCSEESSSCC---
T ss_pred ccccC-hhhhhccceeehhhhccc
Confidence 98766 888999999999999875
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-34 Score=286.60 Aligned_cols=286 Identities=25% Similarity=0.355 Sum_probs=239.0
Q ss_pred hHHHHHHHHHHcccccCCCCCCCCCCCCCCCCcccC--CCCCeEEEEEcCCCCCCCCCCCCCCCccccccchHHHhhhhc
Q psy10956 23 SYREESSTALLNSDSSRSDEYGYFEDMPEKDNKKCG--VDVKKTVTVKHPESNKPKPTTKKKEPIQADLNIEKEFLRCKE 100 (582)
Q Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~l~~w~~~~~~~c~--~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (582)
.|.++|++||++||+++.||. .+.+|.. +...|. |.| |.|..... .
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~-~~~~C~~~w~g-----v~C~~~~~-------------------------~ 49 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP-TTDCCNRTWLG-----VLCDTDTQ-------------------------T 49 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCT-TSCTTTTCSTT-----EEECCSSS-------------------------C
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCC-CCCCCcCCCcc-----eEeCCCCC-------------------------C
Confidence 588999999999999999887 7789954 345676 888 77754211 1
Q ss_pred cCccEEEccCCCCC---CCCccccCCCCCcEEEccC-CCCc-ccChhccCCCCCCEEEccCCCCC-CcchhhhCCCCCCE
Q psy10956 101 ENILNLDLSKSSIT---HLPPSVEKLTHLEELYLYG-NKLA-SLPSQIGYVTNLTCLGLAENSLT-SLPDSLANLQQLRV 174 (582)
Q Consensus 101 ~~l~~L~ls~~~~~---~l~~~~~~l~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~ 174 (582)
.+++.|+++++.++ .+|..+.++++|++|++++ |.+. .+|..++.+++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 35999999999998 4888999999999999995 8888 78999999999999999999998 88899999999999
Q ss_pred EeCCCCCCC-ccchhhhccccccEeecccCcCc-ccCccccCCC-CCCEEEccCCcCc-ccCccccCCCCccEEeccCcc
Q psy10956 175 LDLRHNKLN-ELPMVVYKLTSLKILYLRFNRIK-TVHPDIQYLS-NLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNH 250 (582)
Q Consensus 175 L~L~~n~l~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~-~L~~L~l~~n~l~-~i~~~l~~l~~L~~L~l~~n~ 250 (582)
|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+. .+|..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 78888889999999999999998 7788888887 8999999999988 7777888876 9999999998
Q ss_pred Cc-ccCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCC-cCCccccCCCCCCEEEecCCCCC-CCChhh
Q psy10956 251 LE-ELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLE-SVPETLSKCVHLNEFNVEGCALS-SLPDGL 327 (582)
Q Consensus 251 l~-~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~ 327 (582)
++ ..|..+..+++|++|++++|.+...+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-- 286 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-- 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC--
Confidence 88 4566778888899999998888865555778888888888888887 47777888888888888888877 4444
Q ss_pred hcCCCCCCEEEccCCc
Q psy10956 328 LSSLTSINNITLSRNK 343 (582)
Q Consensus 328 ~~~~~~L~~L~l~~n~ 343 (582)
...+++|+.+++.+|.
T Consensus 287 ~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNK 302 (313)
T ss_dssp STTGGGSCGGGTCSSS
T ss_pred CccccccChHHhcCCC
Confidence 2567777777777775
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=287.06 Aligned_cols=312 Identities=22% Similarity=0.283 Sum_probs=238.0
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeCCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L~~n 180 (582)
-+.++++++.++.+|..+. +++++|++++|.++.+ +..+..+++|++|++++|.++.+ |..|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3467778888888876553 5788888888888855 45678888888888888888855 667888888888888888
Q ss_pred CCCccchh-hhccccccEeecccCcCccc-CccccCCCCCCEEEccCCcCccc-CccccCCCCccEEeccCccCcccCc-
Q psy10956 181 KLNELPMV-VYKLTSLKILYLRFNRIKTV-HPDIQYLSNLSMLSMRDNKIREL-PPELGELKNLVTLDLAHNHLEELPK- 256 (582)
Q Consensus 181 ~l~~l~~~-~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~i-~~~l~~l~~L~~L~l~~n~l~~l~~- 256 (582)
.++.+|.. +.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 88877654 45788888888888888754 44577888888888888888744 4467788888888888888887664
Q ss_pred cccCCCCCcEEeCCCCCCCCcc-hhhcCCCCCcEEEccCCcCCc-CCccccCCCCCCEEEecCCCCCCCChhhhcCCCCC
Q psy10956 257 EIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLES-VPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSI 334 (582)
Q Consensus 257 ~l~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 334 (582)
.+..+++|+.|++++|.+..++ ..+..+++|+.|++++|...+ ++.......+|++|++++|.+..++...+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 4677888888888888887653 467788888888888876543 55555556688888888888888887778888888
Q ss_pred CEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccc-cccCCCCCCEEECcCC
Q psy10956 335 NNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLGTN 413 (582)
Q Consensus 335 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~n 413 (582)
++|++++|.++++....+..+++|+.|++++|.+..+....|..+++|+.|++++|.++.++. .+..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 888888888888777777777788888888887777666667777777777777777776643 4566777777777777
Q ss_pred CCC
Q psy10956 414 QIS 416 (582)
Q Consensus 414 ~l~ 416 (582)
.+.
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 765
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-32 Score=279.67 Aligned_cols=304 Identities=22% Similarity=0.349 Sum_probs=161.2
Q ss_pred CCCCCEEEccCCcCcccCcc-ccCCCCccEEeccCccCcccCc-cccCCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEE
Q psy10956 215 LSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLR 291 (582)
Q Consensus 215 l~~L~~L~l~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~ 291 (582)
+++++.|+++++.+..+|.. +..+++|++|++++|.++.++. .+..+++|++|++++|.+..+ |..++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666666554 4556666666666666665443 556666666666666666654 33456666666666
Q ss_pred ccCCcCCcCCcc-ccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCC
Q psy10956 292 LSYNRLESVPET-LSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDK 370 (582)
Q Consensus 292 l~~n~l~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~ 370 (582)
+++|.++.+|.. +..+++|++|++++|.+..+++..+..+++|++|++++|.++... +..+++|+.+++++|.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence 666666665543 355666666666666666555555555666666666666555432 3334445555555554443
Q ss_pred CChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccccCCCCC
Q psy10956 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRK 450 (582)
Q Consensus 371 i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~ 450 (582)
++ ..++|+.|++++|.+..++.. ..++|++|++++|.++.+ ..+..+++
T Consensus 201 ~~-----~~~~L~~L~l~~n~l~~~~~~-------------------------~~~~L~~L~l~~n~l~~~-~~l~~l~~ 249 (390)
T 3o6n_A 201 LA-----IPIAVEELDASHNSINVVRGP-------------------------VNVELTILKLQHNNLTDT-AWLLNYPG 249 (390)
T ss_dssp EE-----CCSSCSEEECCSSCCCEEECC-------------------------CCSSCCEEECCSSCCCCC-GGGGGCTT
T ss_pred cC-----CCCcceEEECCCCeeeecccc-------------------------ccccccEEECCCCCCccc-HHHcCCCC
Confidence 21 223444455544444443321 124455555555544443 23444455
Q ss_pred CCEEeCCCCCCCCC-cccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCcccccCCCCCCEEeCCCCC
Q psy10956 451 LKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNT 529 (582)
Q Consensus 451 L~~L~L~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~L~l~~n~ 529 (582)
|+.|++++|.++.+ |..+..+++|++|++++|+++.++..+..+++|++|++++|.++.+|..+..+++|++|++++|+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 55555555554432 33444455555555555555544444444555555555555555554444445555555555555
Q ss_pred CCCCCCcccccCCCCCEEecCCCCCC
Q psy10956 530 CLNNIPFELALCSNLQIMSLDNCPLS 555 (582)
Q Consensus 530 ~~~~~~~~l~~l~~L~~L~ls~n~l~ 555 (582)
+.. ++ +..+++|+.|++++|+++
T Consensus 330 i~~-~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 330 IVT-LK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCC-CC--CCTTCCCSEEECCSSCEE
T ss_pred cce-eC--chhhccCCEEEcCCCCcc
Confidence 332 22 344455555555555544
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-32 Score=278.15 Aligned_cols=304 Identities=24% Similarity=0.353 Sum_probs=252.5
Q ss_pred ccccccEeecccCcCcccCcc-ccCCCCCCEEEccCCcCcccCc-cccCCCCccEEeccCccCcccCc-cccCCCCCcEE
Q psy10956 191 KLTSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTL 267 (582)
Q Consensus 191 ~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L 267 (582)
.+++++.|+++++.+..+|+. +..+++|++|++++|.+..++. .+..+++|++|++++|.++.++. .++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 478999999999999988876 5889999999999999997654 78999999999999999997754 57899999999
Q ss_pred eCCCCCCCCcchh-hcCCCCCcEEEccCCcCCcCC-ccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCc
Q psy10956 268 DLQHNELVNIPDM-LGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345 (582)
Q Consensus 268 ~l~~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 345 (582)
++++|.+..+|.. +..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++ +..+++|+.+++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence 9999999988775 589999999999999999864 46899999999999999999875 456789999999999888
Q ss_pred cCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCcc-chhhhC
Q psy10956 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKL-SEDIQN 424 (582)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~ 424 (582)
... ..+.++++++++|.+..++... .++|+.|++++|.+++.+ .+..+++|++|++++|.++.+ +..+..
T Consensus 200 ~~~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 200 TLA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp EEE-----CCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccC-----CCCcceEEECCCCeeeeccccc---cccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccc
Confidence 743 3458999999999998775533 578999999999888763 567778888888888888754 556777
Q ss_pred CCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCC
Q psy10956 425 LVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGE 504 (582)
Q Consensus 425 ~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~ 504 (582)
+++|++|++++|.++.++..+..+++|+.|++++|++..+|..++.+++|++|++++|.++.++ +..+++|++|++++
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCC
Confidence 8888888888888887776667778888888888887777777777777888888888777664 55677777777777
Q ss_pred CCCC
Q psy10956 505 NNLQ 508 (582)
Q Consensus 505 n~l~ 508 (582)
|.++
T Consensus 349 N~~~ 352 (390)
T 3o6n_A 349 NDWD 352 (390)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 7775
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=280.98 Aligned_cols=312 Identities=23% Similarity=0.328 Sum_probs=158.2
Q ss_pred cEeecccCcCcccCccccCCCCCCEEEccCCcCccc-CccccCCCCccEEeccCccCccc-CccccCCCCCcEEeCCCCC
Q psy10956 196 KILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIREL-PPELGELKNLVTLDLAHNHLEEL-PKEIGNCTMLVTLDLQHNE 273 (582)
Q Consensus 196 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i-~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~ 273 (582)
+.++.+++.+..+|..+. ++++.|++++|.++.+ +..+..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 345555555555554332 3555555555555533 23455555555555555555533 3344555555555555555
Q ss_pred CCCcch-hhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCC
Q psy10956 274 LVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGP 352 (582)
Q Consensus 274 l~~i~~-~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 352 (582)
+..+|. .+..+++|++|++++|.++ .+++..+..+++|++|++++|.++...+..+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIV-----------------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred CCccCcccccCCCCCCEEECCCCccc-----------------------cCChhHccccccCCEEECCCCccceeChhhc
Confidence 554433 2344555555555555544 4433334444455555555554444444444
Q ss_pred CCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECcCCCCC-ccchhhhCCCCCCE
Q psy10956 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEV 430 (582)
Q Consensus 353 ~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~-~~~~~l~~~~~L~~ 430 (582)
..+++|++|++++|.+..++...|..+++|+.|++++|.+..+ +..+..+++|+.|++++|... .++.......+|++
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 228 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSE
T ss_pred cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccE
Confidence 4555555555555555555555555555555555555555543 224455555555555554433 33333333445555
Q ss_pred EECcCCCCCccc-cccCCCCCCCEEeCCCCCCCCCcc-cccCCCcCCEEEccCCCCccc-cccccCCCCCCEEECCCCCC
Q psy10956 431 LVLSNNLLKKLP-SSIGNLRKLKCLDLEENKLESLPN-EIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNL 507 (582)
Q Consensus 431 L~ls~n~l~~i~-~~l~~~~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~ls~n~l 507 (582)
|++++|.++.+| ..+..+++|+.|++++|.++.++. .+..+++|++|++++|++..+ +..+..+++|++|++++|.+
T Consensus 229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred EECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 555555555554 244555555555555555553322 345555555555555555533 34555555555555555555
Q ss_pred CcCcc-cccCCCCCCEEeCCCCCCCC
Q psy10956 508 QSIPE-EIGTLENLHTLYLNDNTCLN 532 (582)
Q Consensus 508 ~~i~~-~~~~l~~L~~L~l~~n~~~~ 532 (582)
+.++. .+..+++|++|++++|++.+
T Consensus 309 ~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 309 TTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ceeCHhHcCCCcccCEEEccCCCccC
Confidence 54433 34555555555555555443
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=6.7e-34 Score=282.96 Aligned_cols=275 Identities=22% Similarity=0.261 Sum_probs=210.4
Q ss_pred hHHHHHHHHHHcccccC-CCCCCCCCCCC---CCCCcccCCCCCeEEEEEcCCCCCCCCCCCCCCCccccccchHHHhhh
Q psy10956 23 SYREESSTALLNSDSSR-SDEYGYFEDMP---EKDNKKCGVDVKKTVTVKHPESNKPKPTTKKKEPIQADLNIEKEFLRC 98 (582)
Q Consensus 23 ~~~~~~~~aLl~~k~~~-~~~~~~l~~w~---~~~~~~c~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
.+..+|++||++||+++ .|+.+...+|+ ...+..|.|.| +.|.. ++..+...
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g-----~~~~~-------------------~~~~l~~~ 78 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTG-----RALKA-------------------TADLLEDA 78 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHH-----HHHHH-------------------HHHHHHHH
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCC-----cchhh-------------------hHHHHhcc
Confidence 45568999999999998 67777778885 44566778876 33321 22233333
Q ss_pred hccCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCC
Q psy10956 99 KEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178 (582)
Q Consensus 99 ~~~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~ 178 (582)
...+++.|+++++.++.+|..+.++++|++|++++|.++.+|..++.+++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-ccchhhhc---------cccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccC
Q psy10956 179 HNKLN-ELPMVVYK---------LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAH 248 (582)
Q Consensus 179 ~n~l~-~l~~~~~~---------~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~ 248 (582)
+|++. .+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|.++.+|..++.+++|++|++++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 97655 77766543 777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCc-ccCccccCCCCCcEEeCCCCCCC-CcchhhcCCCCCcEEEccCCcCCc-CCccccCCCCCCEEEecCCCCC
Q psy10956 249 NHLE-ELPKEIGNCTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLES-VPETLSKCVHLNEFNVEGCALS 321 (582)
Q Consensus 249 n~l~-~l~~~l~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~l~~~~~~ 321 (582)
|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+ +|..+..+++|+.+++..+.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 6655 56666777777777777776655 566667777777777777765553 6777777777777766655443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-31 Score=287.00 Aligned_cols=307 Identities=22% Similarity=0.315 Sum_probs=240.7
Q ss_pred CCCCCCEEEccCCcCcccCcc-ccCCCCccEEeccCccCcccCc-cccCCCCCcEEeCCCCCCCCcc-hhhcCCCCCcEE
Q psy10956 214 YLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRL 290 (582)
Q Consensus 214 ~l~~L~~L~l~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L 290 (582)
.+.+++.++++++.+..+|.. +..+++|++|++++|.++.++. .++.+++|++|++++|.+..++ ..++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 356788888888888877765 5678889999999888886654 7788888999999888888764 456888888889
Q ss_pred EccCCcCCcCCcc-ccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCC
Q psy10956 291 RLSYNRLESVPET-LSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID 369 (582)
Q Consensus 291 ~l~~n~l~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~ 369 (582)
++++|.++.+|.. +..+++|++|++++|.+..+++..+..+++|++|++++|.+++.. +..+++|+.+++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 9988888887665 578888888888888888887777888888888888888887753 455677888888888776
Q ss_pred CCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCcc-ccccCCC
Q psy10956 370 KIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL-PSSIGNL 448 (582)
Q Consensus 370 ~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i-~~~l~~~ 448 (582)
.++ ..++|+.|++++|.+..++..+ .++|+.|++++|.++.. ..+..+++|+.|++++|.++.+ |..+..+
T Consensus 206 ~l~-----~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 206 TLA-----IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp EEE-----CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ccc-----CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 542 3567888888888887765433 35788888888888764 4567788888888888888744 6677888
Q ss_pred CCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCcccccCCCCCCEEeCCCC
Q psy10956 449 RKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDN 528 (582)
Q Consensus 449 ~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~L~l~~n 528 (582)
++|+.|+|++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++ +..+++|+.|++++|
T Consensus 278 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 888888888888887777777788888888888888888777777888888888888887664 566778888888888
Q ss_pred CCCCC
Q psy10956 529 TCLNN 533 (582)
Q Consensus 529 ~~~~~ 533 (582)
++.+.
T Consensus 356 ~~~~~ 360 (597)
T 3oja_B 356 DWDCN 360 (597)
T ss_dssp CEEHH
T ss_pred CCCCh
Confidence 76553
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=4.9e-31 Score=284.42 Aligned_cols=304 Identities=24% Similarity=0.351 Sum_probs=266.1
Q ss_pred ccccccEeecccCcCcccCcc-ccCCCCCCEEEccCCcCcccCc-cccCCCCccEEeccCccCcccCc-cccCCCCCcEE
Q psy10956 191 KLTSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTL 267 (582)
Q Consensus 191 ~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L 267 (582)
.+.+++.+++++|.+..+|+. +..+++|++|++++|.+..++. .++.+++|++|++++|.++.++. .++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999988776 5789999999999999996654 78999999999999999997765 46899999999
Q ss_pred eCCCCCCCCcchh-hcCCCCCcEEEccCCcCCcCC-ccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCc
Q psy10956 268 DLQHNELVNIPDM-LGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345 (582)
Q Consensus 268 ~l~~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 345 (582)
++++|.+..+|.. ++.+++|++|++++|.+++++ ..+..+++|++|++++|.+..++ +..+++|+.+++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 9999999988765 589999999999999999854 46889999999999999998876 456789999999999888
Q ss_pred cCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCcc-chhhhC
Q psy10956 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKL-SEDIQN 424 (582)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~ 424 (582)
++ .....|+.|++++|.+..++... .++|+.|++++|.+++. ..+..+++|+.|++++|.++.+ +..+..
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 74 33457999999999998666443 46899999999999875 4678899999999999999864 677889
Q ss_pred CCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCC
Q psy10956 425 LVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGE 504 (582)
Q Consensus 425 ~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~ 504 (582)
+++|+.|++++|.++.+|..+..+++|+.|+|++|.++.+|..++.+++|++|++++|.++.++ +..+++|+.|++++
T Consensus 277 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred ccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence 9999999999999999988888899999999999999999998999999999999999998775 67789999999999
Q ss_pred CCCC
Q psy10956 505 NNLQ 508 (582)
Q Consensus 505 n~l~ 508 (582)
|.+.
T Consensus 355 N~~~ 358 (597)
T 3oja_B 355 NDWD 358 (597)
T ss_dssp SCEE
T ss_pred CCCC
Confidence 9887
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.4e-30 Score=253.98 Aligned_cols=282 Identities=23% Similarity=0.338 Sum_probs=217.1
Q ss_pred CccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccCh-hccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeCCC
Q psy10956 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRH 179 (582)
Q Consensus 102 ~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L~~ 179 (582)
+++.++++++.++.+|..+. +.+++|++++|.++.++. .+..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 47889999988888887553 688999999999887654 688899999999999998866 77888999999999999
Q ss_pred CCCCccchhhhccccccEeecccCcCcccCc-cccCCCCCCEEEccCCcCc---ccCccccCCCCccEEeccCccCcccC
Q psy10956 180 NKLNELPMVVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSMLSMRDNKIR---ELPPELGELKNLVTLDLAHNHLEELP 255 (582)
Q Consensus 180 n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~---~i~~~l~~l~~L~~L~l~~n~l~~l~ 255 (582)
|.++.+|..+. ++|++|++++|.+..+++ .+..+++|++|++++|.+. ..+..+..+++|++|++++|.++.+|
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 99888877654 789999999998886654 3688889999999998886 33456788889999999999888887
Q ss_pred ccccCCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcCCcCC-ccccCCCCCCEEEecCCCCCCCChhhhcCCCC
Q psy10956 256 KEIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333 (582)
Q Consensus 256 ~~l~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 333 (582)
..+. ++|++|++++|.+..+ +..+..+++|+.|++++|.+++++ ..+..+++|++|++++|.+..++.. +..+++
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~ 264 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKY 264 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSS
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh-hccCCC
Confidence 7654 7889999999888865 567888888999999998888754 3678888888888888888877765 677888
Q ss_pred CCEEEccCCcCccCCCCCCCC------CCcccEEEcCCCCCC--CCChhhhhcCCCCCEEeccCC
Q psy10956 334 INNITLSRNKFTAYPSGGPTQ------FTSVYSINFEHNQID--KIPYGIFSRAKNLSKVNMKDN 390 (582)
Q Consensus 334 L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~~~i~--~i~~~~~~~~~~L~~L~l~~n 390 (582)
|++|++++|.+++++...+.. ...++.+++++|.+. .++...|..+..++.+++++|
T Consensus 265 L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 888888888888776655532 245556666666554 344444555555555555544
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-29 Score=252.94 Aligned_cols=281 Identities=22% Similarity=0.313 Sum_probs=223.3
Q ss_pred CccEEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeCCC
Q psy10956 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRH 179 (582)
Q Consensus 102 ~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L~~ 179 (582)
+++.++++++.++.+|..+ .++|++|++++|.+..+ |..+..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4888999999999998766 37899999999999966 45789999999999999999966 77899999999999999
Q ss_pred CCCCccchhhhccccccEeecccCcCcccCcc-ccCCCCCCEEEccCCcCc---ccCccccCCCCccEEeccCccCcccC
Q psy10956 180 NKLNELPMVVYKLTSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIR---ELPPELGELKNLVTLDLAHNHLEELP 255 (582)
Q Consensus 180 n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~---~i~~~l~~l~~L~~L~l~~n~l~~l~ 255 (582)
|.++.+|..+. ++|++|++++|.+..+++. +..+++|++|++++|.++ ..+..+..+ +|++|++++|.++.+|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 99998887665 7899999999999877654 788999999999999886 334556666 8999999999999888
Q ss_pred ccccCCCCCcEEeCCCCCCCCcc-hhhcCCCCCcEEEccCCcCCcCCc-cccCCCCCCEEEecCCCCCCCChhhhcCCCC
Q psy10956 256 KEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333 (582)
Q Consensus 256 ~~l~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 333 (582)
..+. ++|++|++++|.+..++ ..+..+++|+.|++++|.+++++. .+..+++|++|++++|.+..++.. +..+++
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~ 265 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKL 265 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTT
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCcc
Confidence 7664 68999999999988764 678888999999999998887654 678888999999999988888776 677888
Q ss_pred CCEEEccCCcCccCCCCCCCC------CCcccEEEcCCCCCC--CCChhhhhcCCCCCEEeccCC
Q psy10956 334 INNITLSRNKFTAYPSGGPTQ------FTSVYSINFEHNQID--KIPYGIFSRAKNLSKVNMKDN 390 (582)
Q Consensus 334 L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~~~i~--~i~~~~~~~~~~L~~L~l~~n 390 (582)
|++|++++|.++......+.. ...++.+++.+|.+. .+....|..+++|+.+++++|
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 888888888888876655543 245666666666655 455555555555555555554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-29 Score=253.56 Aligned_cols=282 Identities=23% Similarity=0.359 Sum_probs=182.0
Q ss_pred CccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcCCcC-CccccCCCCCCEEEecC
Q psy10956 240 NLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEG 317 (582)
Q Consensus 240 ~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~ 317 (582)
+++.++++++.++.+|..+. ++|++|++++|.+..+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 45666666666666655442 4566666666666544 23455566666666666655553 34455555555555555
Q ss_pred CCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCc---
Q psy10956 318 CALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTS--- 394 (582)
Q Consensus 318 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~--- 394 (582)
|.+..++...+ ++|++|++++|.+..++...|..+++|+.|++++|.++.
T Consensus 112 n~l~~l~~~~~---------------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 112 NHLVEIPPNLP---------------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp SCCCSCCSSCC---------------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred CcCCccCcccc---------------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 55554443321 445555555555555555556666666666666666642
Q ss_pred ccccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccc-cccCCCCCCCEEeCCCCCCCCCcc-cccCCC
Q psy10956 395 LPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLP-SSIGNLRKLKCLDLEENKLESLPN-EIGFLK 472 (582)
Q Consensus 395 l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~-~~l~~~~~L~~L~L~~n~l~~l~~-~l~~~~ 472 (582)
.+..+..+ +|++|++++|.++.+|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.++.++. .+..++
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred CcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 23444444 77777777777776665443 67888888888887554 567778888888888888886554 577788
Q ss_pred cCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCcc-cccC------CCCCCEEeCCCCCCC--CCCCcccccCCC
Q psy10956 473 ELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPE-EIGT------LENLHTLYLNDNTCL--NNIPFELALCSN 543 (582)
Q Consensus 473 ~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~-~~~~------l~~L~~L~l~~n~~~--~~~~~~l~~l~~ 543 (582)
+|++|++++|+++.+|..+..+++|++|++++|.++.++. .+.. ...|+.|++++|++. +..+..+..+++
T Consensus 242 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~ 321 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321 (332)
T ss_dssp TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccch
Confidence 8888888888888888778888888888888888876643 2322 466888888888866 455666778888
Q ss_pred CCEEecCCCC
Q psy10956 544 LQIMSLDNCP 553 (582)
Q Consensus 544 L~~L~ls~n~ 553 (582)
|+.+++++|+
T Consensus 322 L~~l~l~~n~ 331 (332)
T 2ft3_A 322 RLAIQFGNYK 331 (332)
T ss_dssp STTEEC----
T ss_pred hhhhhccccc
Confidence 8888888874
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.5e-29 Score=247.90 Aligned_cols=283 Identities=22% Similarity=0.323 Sum_probs=176.7
Q ss_pred CccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcch-hhcCCCCCcEEEccCCcCCcC-CccccCCCCCCEEEecC
Q psy10956 240 NLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEG 317 (582)
Q Consensus 240 ~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~ 317 (582)
+++.++++++.++.+|..+. +.+++|++++|.++.++. .+..+++|++|++++|.++++ |..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45556666555555554432 455555555555554433 455555555555555555543 34444455555555555
Q ss_pred CCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCc---
Q psy10956 318 CALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTS--- 394 (582)
Q Consensus 318 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~--- 394 (582)
|.+..++.. .+ ++|++|++++|.+..++...|..+++|+.|++++|.+..
T Consensus 110 n~l~~l~~~------------------------~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 110 NQLKELPEK------------------------MP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp SCCSBCCSS------------------------CC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred CcCCccChh------------------------hc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 444443332 11 456666666666666666666777777777777776653
Q ss_pred ccccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCcc-ccccCCCCCCCEEeCCCCCCCCCcc-cccCCC
Q psy10956 395 LPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL-PSSIGNLRKLKCLDLEENKLESLPN-EIGFLK 472 (582)
Q Consensus 395 l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i-~~~l~~~~~L~~L~L~~n~l~~l~~-~l~~~~ 472 (582)
.+..+..+++|++|++++|.++.++..+. ++|++|++++|.++.+ +..+..+++|+.|++++|.++.++. .+..++
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred ChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 34456667777777777777776665443 6777777777777754 5667777778888888877775443 567777
Q ss_pred cCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCccc-cc------CCCCCCEEeCCCCCCCC--CCCcccccCCC
Q psy10956 473 ELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEE-IG------TLENLHTLYLNDNTCLN--NIPFELALCSN 543 (582)
Q Consensus 473 ~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~~-~~------~l~~L~~L~l~~n~~~~--~~~~~l~~l~~ 543 (582)
+|++|++++|.++.+|..+..+++|++|++++|.++.++.. +. ....++.+++++|++.. ..|..+..+++
T Consensus 241 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320 (330)
T ss_dssp TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence 78888888887777777777777888888888877765432 21 23667777888777543 33455667777
Q ss_pred CCEEecCCCC
Q psy10956 544 LQIMSLDNCP 553 (582)
Q Consensus 544 L~~L~ls~n~ 553 (582)
++.+++++|+
T Consensus 321 l~~l~L~~N~ 330 (330)
T 1xku_A 321 RAAVQLGNYK 330 (330)
T ss_dssp GGGEEC----
T ss_pred eeEEEecccC
Confidence 7777777763
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.3e-32 Score=285.00 Aligned_cols=368 Identities=20% Similarity=0.203 Sum_probs=171.1
Q ss_pred CccEEEccCCCCCCCC--ccccCCCCCcEEEccCCCCc-----ccChhccCCCCCCEEEccCCCCCC--cchhhhCCC--
Q psy10956 102 NILNLDLSKSSITHLP--PSVEKLTHLEELYLYGNKLA-----SLPSQIGYVTNLTCLGLAENSLTS--LPDSLANLQ-- 170 (582)
Q Consensus 102 ~l~~L~ls~~~~~~l~--~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~-- 170 (582)
++++||++++.++..+ ..+..+++|++|++++|.++ .++..+..+++|++|++++|.++. +......++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4666777777666332 22556666777777766665 234555666666666666666552 112222333
Q ss_pred --CCCEEeCCCCCCC-----ccchhhhccccccEeecccCcCccc-Ccc-----ccCCCCCCEEEccCCcCcc-----cC
Q psy10956 171 --QLRVLDLRHNKLN-----ELPMVVYKLTSLKILYLRFNRIKTV-HPD-----IQYLSNLSMLSMRDNKIRE-----LP 232 (582)
Q Consensus 171 --~L~~L~L~~n~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~-~~~-----l~~l~~L~~L~l~~n~l~~-----i~ 232 (582)
+|++|++++|.++ .++..+..+++|++|++++|.+... +.. ....++|++|++++|.++. ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 4666666666655 2344455555666666666555421 111 1123345555555555442 12
Q ss_pred ccccCCCCccEEeccCccCccc-Ccccc-----CCCCCcEEeCCCCCCCC-----cchhhcCCCCCcEEEccCCcCCcCC
Q psy10956 233 PELGELKNLVTLDLAHNHLEEL-PKEIG-----NCTMLVTLDLQHNELVN-----IPDMLGNLINLTRLRLSYNRLESVP 301 (582)
Q Consensus 233 ~~l~~l~~L~~L~l~~n~l~~l-~~~l~-----~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~l~~n~l~~~~ 301 (582)
..+..+++|++|++++|.++.. +..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+++..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 2233344444555544444311 01111 12344444444444442 2333344444444444444433210
Q ss_pred -ccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCC
Q psy10956 302 -ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAK 380 (582)
Q Consensus 302 -~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~ 380 (582)
.. +....+..+++|++|++++|.++...... + ...+..++
T Consensus 244 ~~~-------------------l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------------l-~~~l~~~~ 284 (461)
T 1z7x_W 244 MAE-------------------LCPGLLHPSSRLRTLWIWECGITAKGCGD-------------------L-CRVLRAKE 284 (461)
T ss_dssp HHH-------------------HHHHHTSTTCCCCEEECTTSCCCHHHHHH-------------------H-HHHHHHCT
T ss_pred HHH-------------------HHHHHhcCCCCceEEECcCCCCCHHHHHH-------------------H-HHHHhhCC
Confidence 00 00111112333333333333332210000 0 11223344
Q ss_pred CCCEEeccCCcCCc-----ccccc-cCCCCCCEEECcCCCCCc-----cchhhhCCCCCCEEECcCCCCCcc-c----cc
Q psy10956 381 NLSKVNMKDNLLTS-----LPLDL-GTWVGLTELNLGTNQISK-----LSEDIQNLVNLEVLVLSNNLLKKL-P----SS 444 (582)
Q Consensus 381 ~L~~L~l~~n~l~~-----l~~~~-~~~~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~ls~n~l~~i-~----~~ 444 (582)
+|+.|++++|.++. +...+ ...++|++|++++|.++. ++..+..+++|++|++++|.++.. + ..
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 44444444444432 11111 112356666666665552 234455566666666666666522 1 22
Q ss_pred cCC-CCCCCEEeCCCCCCC-----CCcccccCCCcCCEEEccCCCCccc-----cccc-cCCCCCCEEECCCCCCC
Q psy10956 445 IGN-LRKLKCLDLEENKLE-----SLPNEIGFLKELQRLILQSNQLVSL-----PRAI-GHLTNLSYLSVGENNLQ 508 (582)
Q Consensus 445 l~~-~~~L~~L~L~~n~l~-----~l~~~l~~~~~L~~L~l~~n~l~~i-----~~~l-~~~~~L~~L~ls~n~l~ 508 (582)
+.. .++|+.|++++|.++ .++..+..+++|++|++++|+++.. ...+ .....|+.|++.++...
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 222 556777777777666 3555566667777777777766521 1112 12345777777666654
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.9e-31 Score=276.13 Aligned_cols=245 Identities=20% Similarity=0.233 Sum_probs=184.7
Q ss_pred cCccEEEccCCCCC-----CCCccccCCCCCcEEEccCCCCcc-cC-hhccCCC----CCCEEEccCCCCC-----Ccch
Q psy10956 101 ENILNLDLSKSSIT-----HLPPSVEKLTHLEELYLYGNKLAS-LP-SQIGYVT----NLTCLGLAENSLT-----SLPD 164 (582)
Q Consensus 101 ~~l~~L~ls~~~~~-----~l~~~~~~l~~L~~L~l~~~~l~~-l~-~~~~~l~----~L~~L~l~~n~l~-----~lp~ 164 (582)
+++++|++++|.++ .++..+..+++|++|++++|.+.. .+ .....++ +|++|++++|.++ .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 57999999999998 456778899999999999999883 23 3334455 7999999999998 4578
Q ss_pred hhhCCCCCCEEeCCCCCCCc-cchhhh-----ccccccEeecccCcCcc-----cCccccCCCCCCEEEccCCcCccc-C
Q psy10956 165 SLANLQQLRVLDLRHNKLNE-LPMVVY-----KLTSLKILYLRFNRIKT-----VHPDIQYLSNLSMLSMRDNKIREL-P 232 (582)
Q Consensus 165 ~l~~l~~L~~L~L~~n~l~~-l~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~i-~ 232 (582)
.+.++++|++|++++|.++. .+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+... +
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 89999999999999999873 222222 25689999999999884 345567789999999999998732 2
Q ss_pred cccc-----CCCCccEEeccCccCcc-----cCccccCCCCCcEEeCCCCCCCCc------chhhcCCCCCcEEEccCCc
Q psy10956 233 PELG-----ELKNLVTLDLAHNHLEE-----LPKEIGNCTMLVTLDLQHNELVNI------PDMLGNLINLTRLRLSYNR 296 (582)
Q Consensus 233 ~~l~-----~l~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~l~~i------~~~~~~~~~L~~L~l~~n~ 296 (582)
..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+... +..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2222 36799999999999985 566778899999999999988732 2233468899999999998
Q ss_pred CCc-----CCccccCCCCCCEEEecCCCCCCCChhhhc-----CCCCCCEEEccCCcCc
Q psy10956 297 LES-----VPETLSKCVHLNEFNVEGCALSSLPDGLLS-----SLTSINNITLSRNKFT 345 (582)
Q Consensus 297 l~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~l~ 345 (582)
++. ++..+..+++|++|++++|.+.......+. ..++|++|++++|.++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 886 566677788888888888877533222121 2235555555555443
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=6.9e-29 Score=245.29 Aligned_cols=257 Identities=22% Similarity=0.356 Sum_probs=225.6
Q ss_pred CCCC--CCCcccCCCC--CeEEEEEcCCCCCCCCCCCCCCCccccccchHHHhhhhccCccEEEccC-CCCC-CCCcccc
Q psy10956 48 DMPE--KDNKKCGVDV--KKTVTVKHPESNKPKPTTKKKEPIQADLNIEKEFLRCKEENILNLDLSK-SSIT-HLPPSVE 121 (582)
Q Consensus 48 ~w~~--~~~~~c~~~~--~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ls~-~~~~-~l~~~~~ 121 (582)
+.+. |.||.|+..+ ++|+.+++.+..+.+. ..++..+..+ .+|++|++++ |.+. .+|..+.
T Consensus 32 ~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~-----------~~~~~~l~~l--~~L~~L~L~~~n~l~~~~p~~l~ 98 (313)
T 1ogq_A 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP-----------YPIPSSLANL--PYLNFLYIGGINNLVGPIPPAIA 98 (313)
T ss_dssp CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC-----------EECCGGGGGC--TTCSEEEEEEETTEESCCCGGGG
T ss_pred CCCcCCCcceEeCCCCCCceEEEEECCCCCccCC-----------cccChhHhCC--CCCCeeeCCCCCcccccCChhHh
Confidence 4455 8999998765 7999999988766531 0123333333 5799999995 8887 7888999
Q ss_pred CCCCCcEEEccCCCCc-ccChhccCCCCCCEEEccCCCCC-CcchhhhCCCCCCEEeCCCCCCC-ccchhhhccc-cccE
Q psy10956 122 KLTHLEELYLYGNKLA-SLPSQIGYVTNLTCLGLAENSLT-SLPDSLANLQQLRVLDLRHNKLN-ELPMVVYKLT-SLKI 197 (582)
Q Consensus 122 ~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~l~~~~~~~~-~L~~ 197 (582)
++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.++ +|++
T Consensus 99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 9999999999999999 88999999999999999999999 78999999999999999999999 8999999988 9999
Q ss_pred eecccCcCc-ccCccccCCCCCCEEEccCCcCc-ccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCC
Q psy10956 198 LYLRFNRIK-TVHPDIQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELV 275 (582)
Q Consensus 198 L~l~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~ 275 (582)
|++++|.+. .+|..+..++ |++|++++|.+. .++..+..+++|++|++++|.++..+..+..+++|++|++++|.+.
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc
Confidence 999999998 6777788887 999999999999 6667789999999999999999966566888999999999999999
Q ss_pred -CcchhhcCCCCCcEEEccCCcCCc-CCccccCCCCCCEEEecCCC
Q psy10956 276 -NIPDMLGNLINLTRLRLSYNRLES-VPETLSKCVHLNEFNVEGCA 319 (582)
Q Consensus 276 -~i~~~~~~~~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~l~~~~ 319 (582)
.+|..+..+++|++|++++|.+++ +|.. ..+++|+.+++++|.
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 789999999999999999999995 6654 889999999999997
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=8.8e-31 Score=283.16 Aligned_cols=373 Identities=16% Similarity=0.132 Sum_probs=156.4
Q ss_pred CCCCCcEEEccCCCCc-ccChhccC-CCC-CCEEEccCCC-CC--CcchhhhCCCCCCEEeCCCCCCCc-----cchhhh
Q psy10956 122 KLTHLEELYLYGNKLA-SLPSQIGY-VTN-LTCLGLAENS-LT--SLPDSLANLQQLRVLDLRHNKLNE-----LPMVVY 190 (582)
Q Consensus 122 ~l~~L~~L~l~~~~l~-~l~~~~~~-l~~-L~~L~l~~n~-l~--~lp~~l~~l~~L~~L~L~~n~l~~-----l~~~~~ 190 (582)
.+++|++|++++|.++ ..+..+.. +++ |++|++++|. ++ .++....++++|++|+|++|.++. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555555555544 22222322 223 5555555544 11 222233345555555555554431 222333
Q ss_pred ccccccEeecccCcCc-----ccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCc----ccCccccCC
Q psy10956 191 KLTSLKILYLRFNRIK-----TVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLE----ELPKEIGNC 261 (582)
Q Consensus 191 ~~~~L~~L~l~~~~~~-----~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~----~l~~~l~~~ 261 (582)
.+++|++|++++|.+. .++..+.++++|++|++++|.+..++..+..+++|++|++++.... ..+..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 4555555555555543 1222234455555555555554444444445555555555432111 122233444
Q ss_pred CCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCc--CCccccCCCCCCEEEecCCCCC-CCChhhhcCCCCCCEEE
Q psy10956 262 TMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLES--VPETLSKCVHLNEFNVEGCALS-SLPDGLLSSLTSINNIT 338 (582)
Q Consensus 262 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~--~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ 338 (582)
++|+.++++++....+|..+..+++|++|++++|.++. +...+..+++|++|+++ +.+. .........+++|++|+
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEE
Confidence 45555555444333444444444455555555444332 11223444444444444 1111 11111122334444444
Q ss_pred ccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCC-hhhhhcCCCCCEEeccCCcCCc-cccccc-CCCCCCEEECc----
Q psy10956 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIP-YGIFSRAKNLSKVNMKDNLLTS-LPLDLG-TWVGLTELNLG---- 411 (582)
Q Consensus 339 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~-~~~~~~~~~L~~L~l~~n~l~~-l~~~~~-~~~~L~~L~l~---- 411 (582)
+++......... ..+.++... ...+..+++|++|++..+.++. ....+. .+++|+.|+++
T Consensus 349 L~~g~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 349 IERGADEQGMED-------------EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp EECCCCSSTTSS-------------TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred eecCcccccccc-------------ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 441000000000 011222111 1122335555555554444442 111222 24455555553
Q ss_pred CCCCCcc------chhhhCCCCCCEEECcCCC--CC-cccccc-CCCCCCCEEeCCCCCCC--CCcccccCCCcCCEEEc
Q psy10956 412 TNQISKL------SEDIQNLVNLEVLVLSNNL--LK-KLPSSI-GNLRKLKCLDLEENKLE--SLPNEIGFLKELQRLIL 479 (582)
Q Consensus 412 ~n~l~~~------~~~l~~~~~L~~L~ls~n~--l~-~i~~~l-~~~~~L~~L~L~~n~l~--~l~~~l~~~~~L~~L~l 479 (582)
++.++.. +..+.++++|++|+++.|. ++ ..+..+ ..+++|+.|++++|+++ .++..+..+++|++|++
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence 3344432 2223445556666654332 33 111112 23555555655555554 23333445555555555
Q ss_pred cCCCCc--cccccccCCCCCCEEECCCCCCC
Q psy10956 480 QSNQLV--SLPRAIGHLTNLSYLSVGENNLQ 508 (582)
Q Consensus 480 ~~n~l~--~i~~~l~~~~~L~~L~ls~n~l~ 508 (582)
++|.++ .++..+..+++|++|++++|+++
T Consensus 496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp ESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred cCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 555544 23333344555555555555554
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.5e-30 Score=279.63 Aligned_cols=387 Identities=14% Similarity=0.079 Sum_probs=253.5
Q ss_pred ccCccEEEccCCCCCC-CCccccC-CCC-CcEEEccCCC-Cc--ccChhccCCCCCCEEEccCCCCCC-----cchhhhC
Q psy10956 100 EENILNLDLSKSSITH-LPPSVEK-LTH-LEELYLYGNK-LA--SLPSQIGYVTNLTCLGLAENSLTS-----LPDSLAN 168 (582)
Q Consensus 100 ~~~l~~L~ls~~~~~~-l~~~~~~-l~~-L~~L~l~~~~-l~--~l~~~~~~l~~L~~L~l~~n~l~~-----lp~~l~~ 168 (582)
..+|++|+|+++.++. .+..+.. +++ |++|++++|. ++ .++.....+++|++|++++|.++. ++..+.+
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 3679999999998873 3334444 445 9999999986 33 445555689999999999998762 4456678
Q ss_pred CCCCCEEeCCCCCCC-----ccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCc----ccCccccCCC
Q psy10956 169 LQQLRVLDLRHNKLN-----ELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIR----ELPPELGELK 239 (582)
Q Consensus 169 l~~L~~L~L~~n~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~----~i~~~l~~l~ 239 (582)
+++|++|++++|.++ .++..+.++++|++|++++|.+..++..+..+++|++|+++..... ..+..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 999999999999986 4455567899999999999999988888899999999999864332 3344677889
Q ss_pred CccEEeccCccCcccCccccCCCCCcEEeCCCCCCC--CcchhhcCCCCCcEEEccCCcCCc--CCccccCCCCCCEEEe
Q psy10956 240 NLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELV--NIPDMLGNLINLTRLRLSYNRLES--VPETLSKCVHLNEFNV 315 (582)
Q Consensus 240 ~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~--~i~~~~~~~~~L~~L~l~~n~l~~--~~~~l~~~~~L~~L~l 315 (582)
+|+.++++++....+|..+..+++|++|++++|.+. .+...+..+++|+.|+++ +.+.+ ++.....+++|++|++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence 999999998776778888889999999999999976 344557899999999999 44432 4445577899999999
Q ss_pred cC-----------CCCCCC-ChhhhcCCCCCCEEEccCCcCccCCCCCCCC-CCcccEEEcC----CCCCCCCChhhhhc
Q psy10956 316 EG-----------CALSSL-PDGLLSSLTSINNITLSRNKFTAYPSGGPTQ-FTSVYSINFE----HNQIDKIPYGIFSR 378 (582)
Q Consensus 316 ~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~~~i~~i~~~~~~~ 378 (582)
++ +.++.. .......+++|++|++..+.+++.....+.. +++|++|+++ .+.+++.+...
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--- 426 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN--- 426 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH---
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH---
Confidence 93 344421 1122345778888888766665532222222 4445555553 33333321110
Q ss_pred CCCCCEEeccCCcCCcccccccCCCCCCEEECcCCC--CC-ccchh-hhCCCCCCEEECcCCCCC--ccccccCCCCCCC
Q psy10956 379 AKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQ--IS-KLSED-IQNLVNLEVLVLSNNLLK--KLPSSIGNLRKLK 452 (582)
Q Consensus 379 ~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~--l~-~~~~~-l~~~~~L~~L~ls~n~l~--~i~~~l~~~~~L~ 452 (582)
+++..+..+++|++|+++.|. ++ ..... ...+++|++|++++|.++ .++..+..+++|+
T Consensus 427 ---------------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 427 ---------------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ---------------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ---------------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 011123345555555554332 33 11111 233566666666666665 3344445666666
Q ss_pred EEeCCCCCCC--CCcccccCCCcCCEEEccCCCCcc--ccccccCCCCCCEEECCCC
Q psy10956 453 CLDLEENKLE--SLPNEIGFLKELQRLILQSNQLVS--LPRAIGHLTNLSYLSVGEN 505 (582)
Q Consensus 453 ~L~L~~n~l~--~l~~~l~~~~~L~~L~l~~n~l~~--i~~~l~~~~~L~~L~ls~n 505 (582)
.|++++|.++ .++..+..+++|++|++++|+++. +......++.+....+..+
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 6666666655 233334456666667777666552 2222334555555444443
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1e-26 Score=248.53 Aligned_cols=265 Identities=29% Similarity=0.380 Sum_probs=187.8
Q ss_pred HHhhhhccCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCC
Q psy10956 94 EFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLR 173 (582)
Q Consensus 94 ~~~~~~~~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~ 173 (582)
....|...+++.|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|+
T Consensus 33 ~~~~c~~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~ 104 (622)
T 3g06_A 33 KMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLL 104 (622)
T ss_dssp HHHHHHHHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCC
T ss_pred ccccccCCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCC
Confidence 4445555679999999999999998765 899999999999998887 57889999999999998886 678899
Q ss_pred EEeCCCCCCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcc
Q psy10956 174 VLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEE 253 (582)
Q Consensus 174 ~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~ 253 (582)
+|++++|.++.+|. .+++|++|++++|.++.+|.. +++|++|++++|.++.+|. .+.+|+.|++++|.++.
T Consensus 105 ~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 105 ELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp EEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred EEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC
Confidence 99999999888876 567888888888888877653 3777888888887776654 24567777777777777
Q ss_pred cCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCC
Q psy10956 254 LPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333 (582)
Q Consensus 254 l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 333 (582)
+| ..+++|++|++++|.++.+|.. .++|+.|++++|.++.+|.. +++|+.|++++|.++.++ ..+++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp----~~l~~ 242 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP----VLPSE 242 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC----CCCTT
T ss_pred Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC----CCCCc
Confidence 66 3456677777777777666542 35666667776666665532 345556666655555544 22344
Q ss_pred CCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCC
Q psy10956 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTN 413 (582)
Q Consensus 334 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n 413 (582)
|++|+++ +|.++.++. .+++|+.|++++|.++.+|..+..+++|+.|++++|
T Consensus 243 L~~L~Ls------------------------~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 243 LKELMVS------------------------GNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCEEECC------------------------SSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSC
T ss_pred CcEEECC------------------------CCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCC
Confidence 4455554 444444443 345666666666666666666666777777777777
Q ss_pred CCC
Q psy10956 414 QIS 416 (582)
Q Consensus 414 ~l~ 416 (582)
.++
T Consensus 295 ~l~ 297 (622)
T 3g06_A 295 PLS 297 (622)
T ss_dssp CCC
T ss_pred CCC
Confidence 766
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=9e-27 Score=248.93 Aligned_cols=265 Identities=29% Similarity=0.344 Sum_probs=194.4
Q ss_pred CCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCC
Q psy10956 239 KNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGC 318 (582)
Q Consensus 239 ~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~ 318 (582)
.+++.|++++|.++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 358889999999998887765 789999999998888876 56889999999998888876 6688888899888
Q ss_pred CCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCccccc
Q psy10956 319 ALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD 398 (582)
Q Consensus 319 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~ 398 (582)
.+..++. .+++|+.|++++|.++.++.. +++|++|++++|.+..++. .+++|+.|++++|.++.+|
T Consensus 112 ~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 112 PLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC--
T ss_pred cCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc--
Confidence 8887766 457788888888888775432 3677788888877776653 3467777777777777766
Q ss_pred ccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEE
Q psy10956 399 LGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLI 478 (582)
Q Consensus 399 ~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~ 478 (582)
..+++|+.|++++|.++.++.. .++|+.|++++|.++.+|.. +++|+.|++++|.++.+| ..+++|++|+
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~ 247 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELM 247 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred -ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEE
Confidence 3456777777777777766542 35677777777777766642 366777777777777666 3456777777
Q ss_pred ccCCCCccccccccCCCCCCEEECCCCCCCcCcccccCCCCCCEEeCCCCCCCCCCCccc
Q psy10956 479 LQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFEL 538 (582)
Q Consensus 479 l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~L~l~~n~~~~~~~~~l 538 (582)
+++|.++.+|. .+++|+.|++++|.++.+|..+..+++|+.|++++|++.+.+|..+
T Consensus 248 Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 248 VSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 77777776665 4566777777777777777767777777777777777666555443
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5e-27 Score=233.34 Aligned_cols=225 Identities=24% Similarity=0.324 Sum_probs=181.4
Q ss_pred CCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccchhhhccccccEeecc
Q psy10956 122 KLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLR 201 (582)
Q Consensus 122 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~ 201 (582)
..++++.|++++|.+..+|..++.+++|++|++++|.++.+|..++++++|++|++++|.++.+|..+..+++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCc-ccCccccC---------CCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCC
Q psy10956 202 FNRIK-TVHPDIQY---------LSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQH 271 (582)
Q Consensus 202 ~~~~~-~~~~~l~~---------l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~ 271 (582)
+|++. .+|..+.. +++|++|++++|.++.+|..++.+++|++|++++|.++.+|..++.+++|++|++++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 97655 66665543 788888888888888777777788888888888888887777777788888888888
Q ss_pred CCCC-CcchhhcCCCCCcEEEccCCcCCc-CCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCcc
Q psy10956 272 NELV-NIPDMLGNLINLTRLRLSYNRLES-VPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTA 346 (582)
Q Consensus 272 n~l~-~i~~~~~~~~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 346 (582)
|.+. .+|..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|.+.+..+..+..+++|+.+.+..+.+..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 7666 567777778888888888776554 66677777778888887777653333346777777777776654443
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.7e-26 Score=227.78 Aligned_cols=218 Identities=24% Similarity=0.297 Sum_probs=136.2
Q ss_pred cEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChh-ccCCCCCCEEEccCCCCCCc---chhhhCCCCCCEEeCCC
Q psy10956 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSL---PDSLANLQQLRVLDLRH 179 (582)
Q Consensus 104 ~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~l---p~~l~~l~~L~~L~L~~ 179 (582)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. +..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 457777777777776443 5777888887777776654 56777777777777777643 45666677777777777
Q ss_pred CCCCccchhhhccccccEeecccCcCcccCc--cccCCCCCCEEEccCCcCc-ccCccccCCCCccEEeccCccCcc--c
Q psy10956 180 NKLNELPMVVYKLTSLKILYLRFNRIKTVHP--DIQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLEE--L 254 (582)
Q Consensus 180 n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~--l 254 (582)
|.+..+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+. ..+..+..+++|++|++++|.++. +
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 7777666666667777777777777665543 4566666666666666666 333445566666666666666653 4
Q ss_pred CccccCCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcCCcCCc-cccCCCCCCEEEecCCCCCCC
Q psy10956 255 PKEIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSL 323 (582)
Q Consensus 255 ~~~l~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~~~~~~~ 323 (582)
|..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.+++++. .+..+++|++|++++|.+...
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 55555666666666666666544 3445555555555555555554332 334444444444444444433
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.8e-26 Score=225.29 Aligned_cols=242 Identities=27% Similarity=0.357 Sum_probs=208.8
Q ss_pred CcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchh-hhCCCCCCEEeCCCCCCCcc---chhhhccccccEeecc
Q psy10956 126 LEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS-LANLQQLRVLDLRHNKLNEL---PMVVYKLTSLKILYLR 201 (582)
Q Consensus 126 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l---~~~~~~~~~L~~L~l~ 201 (582)
-+.++++++.++.+|..+. ++|++|++++|.++.+|.. |.++++|++|++++|.++.+ +..+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3678999999999987554 7899999999999988865 78999999999999999854 5677789999999999
Q ss_pred cCcCcccCccccCCCCCCEEEccCCcCcccCc--cccCCCCccEEeccCccCcc-cCccccCCCCCcEEeCCCCCCCC--
Q psy10956 202 FNRIKTVHPDIQYLSNLSMLSMRDNKIRELPP--ELGELKNLVTLDLAHNHLEE-LPKEIGNCTMLVTLDLQHNELVN-- 276 (582)
Q Consensus 202 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~l~~n~l~~-- 276 (582)
+|.+..++..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.. .+..+..+++|++|++++|.+..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99999888889999999999999999997764 68889999999999999884 44567888999999999999875
Q ss_pred cchhhcCCCCCcEEEccCCcCCcC-CccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCC
Q psy10956 277 IPDMLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQF 355 (582)
Q Consensus 277 i~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 355 (582)
+|..+..+++|++|++++|.++++ +..+..+++|++|++++|.+..++...+..+++|++|++++|.+++..+..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 688889999999999999999885 6678889999999999999998888778888999999999999888777767666
Q ss_pred C-cccEEEcCCCCCC
Q psy10956 356 T-SVYSINFEHNQID 369 (582)
Q Consensus 356 ~-~L~~L~l~~~~i~ 369 (582)
+ +|+.|++++|.+.
T Consensus 247 ~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 247 PSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTCCEEECTTCCEE
T ss_pred hccCCEEEccCCCee
Confidence 3 7788888877776
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.2e-26 Score=229.71 Aligned_cols=269 Identities=18% Similarity=0.243 Sum_probs=161.6
Q ss_pred EeecccCcCcccCccccCCCCCCEEEccCCcCcccCc-cccCCCCccEEeccCccCcccC-ccccCCCCCcEEeCCCCCC
Q psy10956 197 ILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELP-KEIGNCTMLVTLDLQHNEL 274 (582)
Q Consensus 197 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~l 274 (582)
..+.+++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.++ ..++.+++|++|++++|.+
T Consensus 35 ~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 34444444444443322 245555555555554433 4555566666666666555442 3456666666666666666
Q ss_pred CCcchh-hcCCCCCcEEEccCCcCCcCCc--cccCCCCCCEEEecCC-CCCCCChhhhcCCCCCCEEEccCCcCccCCCC
Q psy10956 275 VNIPDM-LGNLINLTRLRLSYNRLESVPE--TLSKCVHLNEFNVEGC-ALSSLPDGLLSSLTSINNITLSRNKFTAYPSG 350 (582)
Q Consensus 275 ~~i~~~-~~~~~~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 350 (582)
+.++.. +..+++|++|++++|.++.++. .+..+++|++|++++| .+..++...+..+++|++|++++|.+++..+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 665543 5666677777777776666654 5666777777777776 35666555677778888888888888877777
Q ss_pred CCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCccccc----ccCCCCCCEEECcCCCCCccchhhhCCC
Q psy10956 351 GPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD----LGTWVGLTELNLGTNQISKLSEDIQNLV 426 (582)
Q Consensus 351 ~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~----~~~~~~L~~L~l~~n~l~~~~~~l~~~~ 426 (582)
.+..+++|++|++++|.+..++...+..+++|+.|++++|.+++++.. ......++.++++++.++.
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~--------- 263 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD--------- 263 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH---------
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC---------
Confidence 778888888888888888877777777788888888888887764311 1123344455554444431
Q ss_pred CCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccc-cCCCcCCEEEccCCCCc
Q psy10956 427 NLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLV 485 (582)
Q Consensus 427 ~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l-~~~~~L~~L~l~~n~l~ 485 (582)
+.+..+|..+..+++|+.|++++|+++.+|..+ +.+++|++|++++|++.
T Consensus 264 ---------~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 264 ---------ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ---------HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 111123444455555555555555555554442 45555555555555544
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.9e-29 Score=271.40 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=74.2
Q ss_pred cCCCCCEEeccCCcCCcc-cccc-cCCCCCCEEECc--C----CCCCcc------chhhhCCCCCCEEECcCCCCC-ccc
Q psy10956 378 RAKNLSKVNMKDNLLTSL-PLDL-GTWVGLTELNLG--T----NQISKL------SEDIQNLVNLEVLVLSNNLLK-KLP 442 (582)
Q Consensus 378 ~~~~L~~L~l~~n~l~~l-~~~~-~~~~~L~~L~l~--~----n~l~~~------~~~l~~~~~L~~L~ls~n~l~-~i~ 442 (582)
.+++|+.|.+..+.++.. ...+ ..+++|+.|+++ + +.++.. +..+..+++|++|++++ .++ ..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 356666666555555531 1112 235566666666 2 334421 11244566666666655 443 222
Q ss_pred cccCC-CCCCCEEeCCCCCCCC--CcccccCCCcCCEEEccCCCCc--cccccccCCCCCCEEECCCCCCC--cCccccc
Q psy10956 443 SSIGN-LRKLKCLDLEENKLES--LPNEIGFLKELQRLILQSNQLV--SLPRAIGHLTNLSYLSVGENNLQ--SIPEEIG 515 (582)
Q Consensus 443 ~~l~~-~~~L~~L~L~~n~l~~--l~~~l~~~~~L~~L~l~~n~l~--~i~~~l~~~~~L~~L~ls~n~l~--~i~~~~~ 515 (582)
..+.. +++|+.|++++|.++. +......+++|++|++++|.++ .+......+++|++|++++|.++ ++.....
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 22332 5666666666666552 2111244666666666666664 22223444566666666666664 1111113
Q ss_pred CCCCCCEEeCCCC
Q psy10956 516 TLENLHTLYLNDN 528 (582)
Q Consensus 516 ~l~~L~~L~l~~n 528 (582)
.++.|+...+..+
T Consensus 529 ~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 529 KMPKLNVEVIDER 541 (594)
T ss_dssp HCTTEEEEEECSS
T ss_pred hCCCCEEEEecCC
Confidence 4455555444444
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.4e-26 Score=230.38 Aligned_cols=266 Identities=15% Similarity=0.207 Sum_probs=184.9
Q ss_pred cEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCC
Q psy10956 288 TRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQ 367 (582)
Q Consensus 288 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 367 (582)
...+++++.++.+|..+. ++|++|++++|.+..++...+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 344555555555554332 356666666666665555556666666666666666666666666667777777777777
Q ss_pred CCCCChhhhhcCCCCCEEeccCCcCCcccc--cccCCCCCCEEECcCC-CCCcc-chhhhCCCCCCEEECcCCCCCcc-c
Q psy10956 368 IDKIPYGIFSRAKNLSKVNMKDNLLTSLPL--DLGTWVGLTELNLGTN-QISKL-SEDIQNLVNLEVLVLSNNLLKKL-P 442 (582)
Q Consensus 368 i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~l~~n-~l~~~-~~~l~~~~~L~~L~ls~n~l~~i-~ 442 (582)
++.++...|..+++|++|++++|.++.++. .+..+++|++|++++| .+..+ +..+..+++|++|++++|.++.+ |
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 777777767777888888888887777665 5677788888888877 45554 34567778888888888887744 6
Q ss_pred cccCCCCCCCEEeCCCCCCCCCcccc-cCCCcCCEEEccCCCCccccc----cccCCCCCCEEECCCCCCC-----cCcc
Q psy10956 443 SSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPR----AIGHLTNLSYLSVGENNLQ-----SIPE 512 (582)
Q Consensus 443 ~~l~~~~~L~~L~L~~n~l~~l~~~l-~~~~~L~~L~l~~n~l~~i~~----~l~~~~~L~~L~ls~n~l~-----~i~~ 512 (582)
..+..+++|+.|++++|.++.+|..+ ..+++|++|++++|.++.++. .......++.++++++.++ .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 67777888888888888877666543 447788888888887775431 2234566778888887776 3666
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCcc-cccCCCCCEEecCCCCCCC
Q psy10956 513 EIGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCPLSQ 556 (582)
Q Consensus 513 ~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~ls~n~l~~ 556 (582)
.+..+++|++|++++|.+. .+|.. +..+++|++|++++|+++.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 7788888888888888765 56655 4788888888888888873
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.1e-28 Score=266.72 Aligned_cols=405 Identities=17% Similarity=0.188 Sum_probs=281.3
Q ss_pred cCccEEEccCCCCC-C---CC------------ccccCCCCCcEEEccCCCCc-ccChhcc-CCCCCCEEEccCC-CCCC
Q psy10956 101 ENILNLDLSKSSIT-H---LP------------PSVEKLTHLEELYLYGNKLA-SLPSQIG-YVTNLTCLGLAEN-SLTS 161 (582)
Q Consensus 101 ~~l~~L~ls~~~~~-~---l~------------~~~~~l~~L~~L~l~~~~l~-~l~~~~~-~l~~L~~L~l~~n-~l~~ 161 (582)
.+++.|+++++... . .| .....+++|++|++++|.++ ..+..+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 56999999987522 1 11 11346889999999999887 4444454 6889999999988 5553
Q ss_pred --cchhhhCCCCCCEEeCCCCCCCc-----cchhhhccccccEeecccCc--Cc--ccCccccCCCCCCEEEccCC-cCc
Q psy10956 162 --LPDSLANLQQLRVLDLRHNKLNE-----LPMVVYKLTSLKILYLRFNR--IK--TVHPDIQYLSNLSMLSMRDN-KIR 229 (582)
Q Consensus 162 --lp~~l~~l~~L~~L~L~~n~l~~-----l~~~~~~~~~L~~L~l~~~~--~~--~~~~~l~~l~~L~~L~l~~n-~l~ 229 (582)
++..+.++++|++|++++|.++. ++.....+++|++|++++|. +. .+...+..+++|++|++++| .+.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 66666689999999999998663 33333467899999999886 22 22222356799999999988 333
Q ss_pred ccCccccCCCCccEEeccCc-------cCcccCccccCCCCCcEE-eCCCCCCCCcchhhcCCCCCcEEEccCCcCCc--
Q psy10956 230 ELPPELGELKNLVTLDLAHN-------HLEELPKEIGNCTMLVTL-DLQHNELVNIPDMLGNLINLTRLRLSYNRLES-- 299 (582)
Q Consensus 230 ~i~~~l~~l~~L~~L~l~~n-------~l~~l~~~l~~~~~L~~L-~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~-- 299 (582)
.++..+..+++|++|+++.+ .+..++..+.++++|+.+ .+.+.....++..+..+++|++|++++|.+++
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 66667788899999986554 344555677888999998 45444434566666778999999999998764
Q ss_pred CCccccCCCCCCEEEecCCCCC-CCChhhhcCCCCCCEEEccC---------CcCccCCCCCC-CCCCcccEEEcCCCCC
Q psy10956 300 VPETLSKCVHLNEFNVEGCALS-SLPDGLLSSLTSINNITLSR---------NKFTAYPSGGP-TQFTSVYSINFEHNQI 368 (582)
Q Consensus 300 ~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~---------n~l~~~~~~~~-~~~~~L~~L~l~~~~i 368 (582)
+...+..+++|++|++++| +. .........+++|++|++.. +.+++.....+ ..+++|+.|.+..+.+
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l 384 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence 3344668899999999988 33 11222234588999999844 33333111111 2368899998888888
Q ss_pred CCCChhhh-hcCCCCCEEecc--C----CcCCcc------cccccCCCCCCEEECcCCCCC-ccchhhh-CCCCCCEEEC
Q psy10956 369 DKIPYGIF-SRAKNLSKVNMK--D----NLLTSL------PLDLGTWVGLTELNLGTNQIS-KLSEDIQ-NLVNLEVLVL 433 (582)
Q Consensus 369 ~~i~~~~~-~~~~~L~~L~l~--~----n~l~~l------~~~~~~~~~L~~L~l~~n~l~-~~~~~l~-~~~~L~~L~l 433 (582)
+......+ ..+++|+.|+++ + +.++.. +..+..+++|+.|++++ .++ .....+. .+++|++|++
T Consensus 385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L 463 (594)
T 2p1m_B 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSV 463 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEE
T ss_pred CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeec
Confidence 74443333 368999999999 3 455532 22356788999999987 555 2333344 3899999999
Q ss_pred cCCCCC-cccccc-CCCCCCCEEeCCCCCCCC--CcccccCCCcCCEEEccCCCCc--cccccccCCCCCCEEECCCCCC
Q psy10956 434 SNNLLK-KLPSSI-GNLRKLKCLDLEENKLES--LPNEIGFLKELQRLILQSNQLV--SLPRAIGHLTNLSYLSVGENNL 507 (582)
Q Consensus 434 s~n~l~-~i~~~l-~~~~~L~~L~L~~n~l~~--l~~~l~~~~~L~~L~l~~n~l~--~i~~~l~~~~~L~~L~ls~n~l 507 (582)
++|.++ .....+ ..+++|+.|++++|.++. +......+++|++|++++|+++ .+......++.|+...+..+..
T Consensus 464 ~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp ESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred cCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 999987 222333 678999999999999872 3334566899999999999986 2222225678887777766543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=7.6e-25 Score=227.30 Aligned_cols=240 Identities=24% Similarity=0.396 Sum_probs=172.9
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeCCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHN 180 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L~~n 180 (582)
...+++++..++.+|..+. ++++.|++++|.+..+ +..+..+++|++|++++|.++.++ ..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 5668888888888887654 6788888888888855 466788888888888888888654 56788888888888888
Q ss_pred CCCccch-hhhccccccEeecccCcCcccCc-cccCCCCCCEEEccCC-cCcccCc-cccCCCCccEEeccCccCcccCc
Q psy10956 181 KLNELPM-VVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSMLSMRDN-KIRELPP-ELGELKNLVTLDLAHNHLEELPK 256 (582)
Q Consensus 181 ~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~n-~l~~i~~-~l~~l~~L~~L~l~~n~l~~l~~ 256 (582)
+++.++. .+..+++|++|++++|.+..+++ .+..+++|++|++++| .+..++. .+..+++|++|++++|.++.+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence 8887765 35677888888888888776654 4677788888888774 3445544 4667777777777777777775
Q ss_pred cccCCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcCCcC-CccccCCCCCCEEEecCCCCCCCChhhhcCCCCC
Q psy10956 257 EIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSI 334 (582)
Q Consensus 257 ~l~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 334 (582)
.+..+++|++|++++|.+..+ +..+..+++|+.|++++|.++.+ +..+..+++|++|++++|.++.++...+..+++|
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 366677777777777777755 55667777777777777777663 3456666667777777776666666666666666
Q ss_pred CEEEccCCcCc
Q psy10956 335 NNITLSRNKFT 345 (582)
Q Consensus 335 ~~L~l~~n~l~ 345 (582)
+.|++++|.+.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 66666666543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=9.6e-25 Score=227.34 Aligned_cols=240 Identities=22% Similarity=0.365 Sum_probs=171.4
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeCCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHN 180 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L~~n 180 (582)
...+++++..++.+|..+. +++++|++++|.++.+ +..+..+++|++|++++|.++.++ ..|.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 5678888888888886553 6788888888888855 566788888888888888888554 56788888888888888
Q ss_pred CCCccchh-hhccccccEeecccCcCcccCc-cccCCCCCCEEEccC-CcCcccCc-cccCCCCccEEeccCccCcccCc
Q psy10956 181 KLNELPMV-VYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSMLSMRD-NKIRELPP-ELGELKNLVTLDLAHNHLEELPK 256 (582)
Q Consensus 181 ~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~-n~l~~i~~-~l~~l~~L~~L~l~~n~l~~l~~ 256 (582)
.++.++.. +..+++|++|++++|.+..++. .+..+++|++|++++ +.+..++. .+..+++|++|++++|.++.+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 88876654 4567888888888888776654 467778888888877 34445544 3667777777777777777664
Q ss_pred cccCCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcCCcC-CccccCCCCCCEEEecCCCCCCCChhhhcCCCCC
Q psy10956 257 EIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSI 334 (582)
Q Consensus 257 ~l~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 334 (582)
.+..+++|++|++++|.+..+ |..+..+++|+.|++++|.++.+ +..+..+++|++|++++|.+..++...+..+++|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 466677777777777777754 55667777777777777777653 4456666667777777766666666656666666
Q ss_pred CEEEccCCcCc
Q psy10956 335 NNITLSRNKFT 345 (582)
Q Consensus 335 ~~L~l~~n~l~ 345 (582)
+.|++++|.+.
T Consensus 293 ~~L~L~~Np~~ 303 (452)
T 3zyi_A 293 VELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEccCCCcC
Confidence 66666666543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.8e-24 Score=222.99 Aligned_cols=243 Identities=24% Similarity=0.388 Sum_probs=130.6
Q ss_pred CCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCC
Q psy10956 286 NLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEH 365 (582)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (582)
....++..+..++.+|..+. ++++.|++++|.+..++...+..+++|++|++++|.++.+....+..+++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34566666666666665443 4666666666666666555566666666666666666665555555556666666666
Q ss_pred CCCCCCChhhhhcCCCCCEEeccCCcCCcccc-cccCCCCCCEEECcCC-CCCccch-hhhCCCCCCEEECcCCCCCccc
Q psy10956 366 NQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLGTN-QISKLSE-DIQNLVNLEVLVLSNNLLKKLP 442 (582)
Q Consensus 366 ~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~n-~l~~~~~-~l~~~~~L~~L~ls~n~l~~i~ 442 (582)
|.++.++...|..+++|+.|++++|.+..++. .+..+++|++|++++| .+..++. .+.++++|++|++++|.++.+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 66655555555555555555555555555432 3445555555555552 3333332 2444555555555555555544
Q ss_pred cccCCCCCCCEEeCCCCCCCCC-cccccCCCcCCEEEccCCCCccc-cccccCCCCCCEEECCCCCCCcCcc-cccCCCC
Q psy10956 443 SSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNLQSIPE-EIGTLEN 519 (582)
Q Consensus 443 ~~l~~~~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~ls~n~l~~i~~-~~~~l~~ 519 (582)
. +..+++|+.|++++|.++.+ |..+..+++|++|++++|+++.+ +..+..+++|++|++++|+++.++. .+..+++
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 2 44455555555555555533 33444555555555555555433 2344455555555555555554432 2344555
Q ss_pred CCEEeCCCCCCC
Q psy10956 520 LHTLYLNDNTCL 531 (582)
Q Consensus 520 L~~L~l~~n~~~ 531 (582)
|+.|++++|++.
T Consensus 281 L~~L~L~~Np~~ 292 (440)
T 3zyj_A 281 LERIHLHHNPWN 292 (440)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEcCCCCcc
Confidence 555555555543
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3e-25 Score=216.41 Aligned_cols=218 Identities=22% Similarity=0.322 Sum_probs=110.3
Q ss_pred EEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCC-
Q psy10956 289 RLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQ- 367 (582)
Q Consensus 289 ~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~- 367 (582)
.++++++.++.+|..+ .+++++|++++|.+..++...+..+++|++|++++|.++++.+..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 3444444444443322 2344444444444444444334444455555555554444444444444455555555543
Q ss_pred CCCCChhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECcCCCCCccchh-hhCCCCCCEEECcCCCCCcccc-c
Q psy10956 368 IDKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQISKLSED-IQNLVNLEVLVLSNNLLKKLPS-S 444 (582)
Q Consensus 368 i~~i~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~ls~n~l~~i~~-~ 444 (582)
+..++...|..+++|+.|++++|.++.+ +..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 4444444444555555555555555543 33344555555555555555544332 4455556666666665554443 3
Q ss_pred cCCCCCCCEEeCCCCCCCCC-cccccCCCcCCEEEccCCCCcccc-ccccCCCCCCEEECCCCCCC
Q psy10956 445 IGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQ 508 (582)
Q Consensus 445 l~~~~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~i~-~~l~~~~~L~~L~ls~n~l~ 508 (582)
+..+++|+.|++++|.++.+ |..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55556666666666655533 444555556666666666555444 33555566666666666554
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.7e-24 Score=222.13 Aligned_cols=243 Identities=25% Similarity=0.343 Sum_probs=160.2
Q ss_pred CCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcC-CccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccC
Q psy10956 263 MLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSR 341 (582)
Q Consensus 263 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 341 (582)
....++.++..++.+|..+. +++++|++++|.++.+ +..+..+++|++|++++|.+..++...+..+++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34567777777777775443 5777777877777764 45677777777777777777777666677777777777777
Q ss_pred CcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCC-cCCcccc-cccCCCCCCEEECcCCCCCccc
Q psy10956 342 NKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN-LLTSLPL-DLGTWVGLTELNLGTNQISKLS 419 (582)
Q Consensus 342 n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n-~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~ 419 (582)
|.++.+....+..+++|++|++++|.+..++...|..+++|+.|++++| .+..++. .+..+++|++|++++|.++.++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 7777776666777777777777777777666666667777777777763 3444432 3556666666666666666554
Q ss_pred hhhhCCCCCCEEECcCCCCCcc-ccccCCCCCCCEEeCCCCCCCCC-cccccCCCcCCEEEccCCCCcccc-ccccCCCC
Q psy10956 420 EDIQNLVNLEVLVLSNNLLKKL-PSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLP-RAIGHLTN 496 (582)
Q Consensus 420 ~~l~~~~~L~~L~ls~n~l~~i-~~~l~~~~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~i~-~~l~~~~~ 496 (582)
.+..+++|++|++++|.++.+ |..+..+++|+.|++++|+++.+ +..+..+++|++|++++|+++.++ ..+..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 355566666666666666644 45566666666666666666643 334556666666666666666554 34455666
Q ss_pred CCEEECCCCCCC
Q psy10956 497 LSYLSVGENNLQ 508 (582)
Q Consensus 497 L~~L~ls~n~l~ 508 (582)
|+.|++++|.+.
T Consensus 292 L~~L~L~~Np~~ 303 (452)
T 3zyi_A 292 LVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEccCCCcC
Confidence 666666666553
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=9.4e-25 Score=212.93 Aligned_cols=217 Identities=22% Similarity=0.325 Sum_probs=98.6
Q ss_pred EEeccCccCcccCccccCCCCCcEEeCCCCCCCCcc-hhhcCCCCCcEEEccCCcCCcC-CccccCCCCCCEEEecCCC-
Q psy10956 243 TLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCA- 319 (582)
Q Consensus 243 ~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~~~- 319 (582)
.++++++.++.+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|.++++ +..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 4444444444444332 234555555555554433 2344455555555555554443 3344445555555555554
Q ss_pred CCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccc-c
Q psy10956 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-D 398 (582)
Q Consensus 320 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~-~ 398 (582)
+..+++..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..++...|..+++|+.|++++|.++.++. .
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 444444444455555555555555554444444444444444444444444444444444455555555544444332 2
Q ss_pred ccCCCCCCEEECcCCCCCcc-chhhhCCCCCCEEECcCCCCCccc-cccCCCCCCCEEeCCCCCC
Q psy10956 399 LGTWVGLTELNLGTNQISKL-SEDIQNLVNLEVLVLSNNLLKKLP-SSIGNLRKLKCLDLEENKL 461 (582)
Q Consensus 399 ~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~ls~n~l~~i~-~~l~~~~~L~~L~L~~n~l 461 (582)
+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 33444444444444444432 333344444444444444444332 2234444444444444433
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.5e-26 Score=227.02 Aligned_cols=238 Identities=23% Similarity=0.270 Sum_probs=145.1
Q ss_pred cCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCc--ccChhcc-------CCCCCCEEEccCCCCC-Ccchhh--hC
Q psy10956 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLA--SLPSQIG-------YVTNLTCLGLAENSLT-SLPDSL--AN 168 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~--~l~~~~~-------~l~~L~~L~l~~n~l~-~lp~~l--~~ 168 (582)
.+++.|++++|.+ .+|..+... |+.|++++|.+. .+|..+. .+++|++|++++|.++ .+|..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4577888888888 777765544 788888888875 5666555 6788888888888887 567665 77
Q ss_pred CCCCCEEeCCCCCCCccchhhhcc-----ccccEeecccCcCcccC-ccccCCCCCCEEEccCCcCcc---cCccc--cC
Q psy10956 169 LQQLRVLDLRHNKLNELPMVVYKL-----TSLKILYLRFNRIKTVH-PDIQYLSNLSMLSMRDNKIRE---LPPEL--GE 237 (582)
Q Consensus 169 l~~L~~L~L~~n~l~~l~~~~~~~-----~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~---i~~~l--~~ 237 (582)
+++|++|++++|.++.+|..+..+ ++|++|++++|.+..++ ..++.+++|++|++++|.+.. ++..+ ..
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 888888888888888667666655 67777777777777554 456666777777777766541 22222 55
Q ss_pred CCCccEEeccCccCcccC---cc-ccCCCCCcEEeCCCCCCCCcc--hhhcCCCCCcEEEccCCcCCcCCccccCCCCCC
Q psy10956 238 LKNLVTLDLAHNHLEELP---KE-IGNCTMLVTLDLQHNELVNIP--DMLGNLINLTRLRLSYNRLESVPETLSKCVHLN 311 (582)
Q Consensus 238 l~~L~~L~l~~n~l~~l~---~~-l~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~ 311 (582)
+++|++|++++|.++.++ .. +..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+|..+. ++|+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~ 277 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS 277 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence 556666666666555222 11 234455555555555555422 233344555555555555555544433 4455
Q ss_pred EEEecCCCCCCCChhhhcCCCCCCEEEccCCcCc
Q psy10956 312 EFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345 (582)
Q Consensus 312 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 345 (582)
+|++++|.++.++. +..+++|++|++++|.++
T Consensus 278 ~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 278 VLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEECCSSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred EEECCCCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence 55555555544433 444444444444444443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.8e-26 Score=227.22 Aligned_cols=253 Identities=22% Similarity=0.290 Sum_probs=131.5
Q ss_pred CcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcCCcCC-ccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccC
Q psy10956 264 LVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSR 341 (582)
Q Consensus 264 L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 341 (582)
++..+++.+.+... ...+..+++|++|++++|.+++++ ..+..+++|++|++++|.+...++ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 34445555555432 233445556777777777776654 456666677777777766665443 55666666666666
Q ss_pred CcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECcCCCCCccc-
Q psy10956 342 NKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQISKLS- 419 (582)
Q Consensus 342 n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~- 419 (582)
|.++++. ..++|++|++++|.+..++.. .+++|+.|++++|.++.+ +..+..+++|++|++++|.++.++
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 6655532 124555555555555544322 234455555555555543 223444555555555555555322
Q ss_pred hhh-hCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCccccccccCCCCCC
Q psy10956 420 EDI-QNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLS 498 (582)
Q Consensus 420 ~~l-~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~ 498 (582)
..+ ..+++|++|++++|.++.++. ...+++|+.|++++|.++.+|..+..+++|++|++++|+++.+|..+..+++|+
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~ 240 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred HHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCC
Confidence 222 234555555555555554432 223455555555555555444444455555555555555555554445555555
Q ss_pred EEECCCCCCC--cCcccccCCCCCCEEeCCC
Q psy10956 499 YLSVGENNLQ--SIPEEIGTLENLHTLYLND 527 (582)
Q Consensus 499 ~L~ls~n~l~--~i~~~~~~l~~L~~L~l~~ 527 (582)
.|++++|.+. .++..+..+++|+.+++.+
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 5555555554 3344444455555555543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3e-25 Score=219.81 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=137.6
Q ss_pred CcEEEccCCcCCcCC-ccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCC
Q psy10956 287 LTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEH 365 (582)
Q Consensus 287 L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (582)
++..+++.+.+...+ ..+..+++|++|++++|.+..+++..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 444555555554322 234456678888888888887777667778888888888877765432 44555555555555
Q ss_pred CCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccc-cc
Q psy10956 366 NQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLP-SS 444 (582)
Q Consensus 366 ~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~-~~ 444 (582)
|.++.++ ..++|+.|++++|.+++++ . ..+++|++|++++|.++.++ ..
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~-----------------------~--~~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVS-----------------------C--SRGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEE-----------------------E--CCCSSCEEEECCSSCCCSGGGBC
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcC-----------------------c--cccCCCCEEECCCCCCCCccchh
Confidence 5554433 2245555555555544432 2 12344555555555554332 23
Q ss_pred cCCCCCCCEEeCCCCCCCCCc-ccc-cCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCcccccCCCCCCE
Q psy10956 445 IGNLRKLKCLDLEENKLESLP-NEI-GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHT 522 (582)
Q Consensus 445 l~~~~~L~~L~L~~n~l~~l~-~~l-~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~~~~~~l~~L~~ 522 (582)
+..+++|+.|++++|.++.++ ..+ ..+++|++|++++|.++.++.. ..+++|++|++++|.++.+|..+..+++|++
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccE
Confidence 444555555555555555321 222 2345555555555555544322 2255555555555555555545555555555
Q ss_pred EeCCCCCCCCCCCcccccCCCCCEEecCCCCCC-CCcHHhHcCChHHHHHHHH
Q psy10956 523 LYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS-QIPSEIVVGGPSLIIRYLK 574 (582)
Q Consensus 523 L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~l~~~~l~ 574 (582)
|++++|.+. .+|..+..+++|+.|++++|+++ ......+..++.|+.+.+.
T Consensus 219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 566555533 34445555556666666666655 4444555555555555443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.2e-25 Score=222.00 Aligned_cols=243 Identities=21% Similarity=0.246 Sum_probs=173.4
Q ss_pred ccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCC--Ccchhhh-------CCCCCCEEeCCCCCCC-ccchhh
Q psy10956 120 VEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT--SLPDSLA-------NLQQLRVLDLRHNKLN-ELPMVV 189 (582)
Q Consensus 120 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~--~lp~~l~-------~l~~L~~L~L~~n~l~-~l~~~~ 189 (582)
+...++|+.|++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|+++ .+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 45567788888888888 777766544 888888888875 4666555 7888888888888887 667655
Q ss_pred --hccccccEeecccCcCcccCccccCC-----CCCCEEEccCCcCcccC-ccccCCCCccEEeccCccCcc---cCccc
Q psy10956 190 --YKLTSLKILYLRFNRIKTVHPDIQYL-----SNLSMLSMRDNKIRELP-PELGELKNLVTLDLAHNHLEE---LPKEI 258 (582)
Q Consensus 190 --~~~~~L~~L~l~~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~---l~~~l 258 (582)
..+++|++|++++|.+...|..+..+ ++|++|++++|.+..++ ..++.+++|++|++++|.+.. ++..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 67888888888888888766666655 78888888888888655 567788888888888887652 23333
Q ss_pred --cCCCCCcEEeCCCCCCCCcc----hhhcCCCCCcEEEccCCcCCcCC--ccccCCCCCCEEEecCCCCCCCChhhhcC
Q psy10956 259 --GNCTMLVTLDLQHNELVNIP----DMLGNLINLTRLRLSYNRLESVP--ETLSKCVHLNEFNVEGCALSSLPDGLLSS 330 (582)
Q Consensus 259 --~~~~~L~~L~l~~n~l~~i~----~~~~~~~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 330 (582)
+.+++|++|++++|.++.++ ..+..+++|++|++++|.+++.+ ..+..+++|++|++++|.++.++....
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--
Confidence 67788888888888887443 23356778888888888877643 345556777777777777776666432
Q ss_pred CCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCC
Q psy10956 331 LTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDK 370 (582)
Q Consensus 331 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~ 370 (582)
++|++|++++|.+++.+. +..+++|+++++++|.+++
T Consensus 274 -~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCC
Confidence 667777777777766522 5566666666666666553
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.8e-24 Score=225.05 Aligned_cols=240 Identities=23% Similarity=0.311 Sum_probs=141.6
Q ss_pred CcchhhcCC----CCCcEEEccCCcCCcCC-ccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCC
Q psy10956 276 NIPDMLGNL----INLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSG 350 (582)
Q Consensus 276 ~i~~~~~~~----~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 350 (582)
.+|..+..+ ++|+.|++++|.+++++ ..+..+++|++|++++|.+...++ +..+++|++|++++|.+++++.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 344444443 36777777777777653 467777777777777777765544 6667777777777776665432
Q ss_pred CCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECcCCCCCc-cchhhh-CCCC
Q psy10956 351 GPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQISK-LSEDIQ-NLVN 427 (582)
Q Consensus 351 ~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~-~~~~l~-~~~~ 427 (582)
.++|+.|++++|.+..++.. .+++|+.|++++|.++++ +..+..+++|+.|++++|.++. .+..+. .+++
T Consensus 98 ----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 25666666666666654432 245566666666666654 4445555666666666666653 233332 4566
Q ss_pred CCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCC
Q psy10956 428 LEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNL 507 (582)
Q Consensus 428 L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l 507 (582)
|++|++++|.++.++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+
T Consensus 171 L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred ccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence 6666666666655533 234556666666666666555555555666666666666665555555556666666666655
Q ss_pred C--cCcccccCCCCCCEEeCC
Q psy10956 508 Q--SIPEEIGTLENLHTLYLN 526 (582)
Q Consensus 508 ~--~i~~~~~~l~~L~~L~l~ 526 (582)
. .+|..+..++.|+.+++.
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEecc
Confidence 5 444555555555555553
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=2e-23 Score=205.54 Aligned_cols=210 Identities=28% Similarity=0.440 Sum_probs=139.0
Q ss_pred EccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccc
Q psy10956 107 DLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELP 186 (582)
Q Consensus 107 ~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~ 186 (582)
.+..+.++++. ....+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|.++.++
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch
Confidence 34444444322 2345667777777777777665 46667777777777777776665 777777777777777777665
Q ss_pred hhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcE
Q psy10956 187 MVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVT 266 (582)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~ 266 (582)
.+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTT 177 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred -hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCE
Confidence 35567777777777777766543 6667777777777777765544 6666777777777777666544 666677777
Q ss_pred EeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCCh
Q psy10956 267 LDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPD 325 (582)
Q Consensus 267 L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 325 (582)
|++++|.+..++. +..+++|++|++++|.+++++ .+..+++|+.|++++|.+...+.
T Consensus 178 L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 178 LKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred EECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 7777777766654 566677777777777666654 35666666666666666655443
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6.6e-24 Score=222.30 Aligned_cols=231 Identities=21% Similarity=0.284 Sum_probs=106.3
Q ss_pred CccEEeccCccCcccC-ccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCC
Q psy10956 240 NLVTLDLAHNHLEELP-KEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGC 318 (582)
Q Consensus 240 ~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~ 318 (582)
+|++|++++|.++.++ ..++.+++|++|++++|.++.+++ +..+++|++|++++|.+++++. .++|++|++++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N 109 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN 109 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCC
Confidence 4444444444444332 234444444444444444443322 4444455555555554443321 144455555555
Q ss_pred CCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhh-hcCCCCCEEeccCCcCCcccc
Q psy10956 319 ALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIF-SRAKNLSKVNMKDNLLTSLPL 397 (582)
Q Consensus 319 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~-~~~~~L~~L~l~~n~l~~l~~ 397 (582)
.+..++.. .+++|+.|++++|.+++..+..+..+++|+.|++++|.++.+....+ ..+++|+.|++++|.+++++.
T Consensus 110 ~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 110 NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp CCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred cCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 44443321 23445555555555554444444444555555555555553322222 245555555555555554432
Q ss_pred cccCCCCCCEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCC--CCcccccCCCcCC
Q psy10956 398 DLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLE--SLPNEIGFLKELQ 475 (582)
Q Consensus 398 ~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~--~l~~~l~~~~~L~ 475 (582)
. ..+++|+.|++++|.++.++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++.|+
T Consensus 187 ~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 187 Q-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp C-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred c-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 2 234455555555555554444444445555555555555544444444444555555544444 2333333344443
Q ss_pred EEEc
Q psy10956 476 RLIL 479 (582)
Q Consensus 476 ~L~l 479 (582)
.+++
T Consensus 266 ~l~~ 269 (487)
T 3oja_A 266 TVAK 269 (487)
T ss_dssp HHHH
T ss_pred EEec
Confidence 3333
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.4e-22 Score=199.34 Aligned_cols=196 Identities=27% Similarity=0.479 Sum_probs=179.4
Q ss_pred cCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCC
Q psy10956 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n 180 (582)
.++++|+++++.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 57999999999999987 58899999999999999998877 999999999999999999886 6999999999999999
Q ss_pred CCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccC
Q psy10956 181 KLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260 (582)
Q Consensus 181 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~ 260 (582)
.++.++. +..+++|++|++++|.+..+++ +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..
T Consensus 118 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~ 193 (308)
T 1h6u_A 118 QITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LAS 193 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred CCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcC
Confidence 9998876 7789999999999999998765 8899999999999999998766 8899999999999999998865 888
Q ss_pred CCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccc
Q psy10956 261 CTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETL 304 (582)
Q Consensus 261 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l 304 (582)
+++|++|++++|.+..++. +..+++|+.|++++|.++..|..+
T Consensus 194 l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp CTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred CCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence 9999999999999998874 899999999999999998766543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.6e-22 Score=193.87 Aligned_cols=194 Identities=32% Similarity=0.490 Sum_probs=127.6
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccCh-hccCCCCCCEEEccCCCCCCcchh-hhCCCCCCEEeCCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAENSLTSLPDS-LANLQQLRVLDLRHN 180 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~L~~n 180 (582)
.+.++++++.++.+|..+. +++++|++++|.++.++. .+..+++|++|++++|.++.+|.. |.++++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 5567777777777776543 567888888887776654 577777788888887777766654 467777888888777
Q ss_pred CCCccchh-hhccccccEeecccCcCcccCcc-ccCCCCCCEEEccCCcCcccCcc-ccCCCCccEEeccCccCcccCc-
Q psy10956 181 KLNELPMV-VYKLTSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPK- 256 (582)
Q Consensus 181 ~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~l~~- 256 (582)
.++.++.. +..+++|++|++++|.+..+++. +..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 77766543 34567777777777776655433 46666777777777766655543 5566666666666666665544
Q ss_pred cccCCCCCcEEeCCCCCCCCcch-hhcCCCCCcEEEccCCcCC
Q psy10956 257 EIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLE 298 (582)
Q Consensus 257 ~l~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~l~~n~l~ 298 (582)
.+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 35556666666666666665543 3555566666666666543
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.8e-22 Score=195.82 Aligned_cols=213 Identities=24% Similarity=0.284 Sum_probs=115.8
Q ss_pred EEEccCCCCCCCCccccCCCCCcEEEccCCCCcccCh-hccCCCCCCEEEccCCCCCCcch-hhhCCCCCCEEeCCCCCC
Q psy10956 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRVLDLRHNKL 182 (582)
Q Consensus 105 ~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L~~n~l 182 (582)
.++.++..++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45666666666766443 457777777777775543 56667777777777777765543 566677777777777776
Q ss_pred Cccc-hhhhccccccEeecccCcCcccCc-cccCCCCCCEEEccCCcCcc--cCccccCCCCccEEeccCccCcccCc-c
Q psy10956 183 NELP-MVVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSMLSMRDNKIRE--LPPELGELKNLVTLDLAHNHLEELPK-E 257 (582)
Q Consensus 183 ~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~--i~~~l~~l~~L~~L~l~~n~l~~l~~-~ 257 (582)
+.++ ..+.++++|++|++++|.+..++. .+..+++|++|++++|.+.. +|..+..+++|++|++++|.++.++. .
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 6444 344556666666666666654433 35555666666666665553 34455555555555555555554332 2
Q ss_pred ccCCCCCc----EEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCcc-ccCCCCCCEEEecCCC
Q psy10956 258 IGNCTMLV----TLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPET-LSKCVHLNEFNVEGCA 319 (582)
Q Consensus 258 l~~~~~L~----~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~~~ 319 (582)
+..+++|+ +|++++|.+..++.......+|+.|++++|.++.++.. +..+++|++|++++|.
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 33333333 44444444444433333333444444444444443322 2333444444444433
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.1e-22 Score=195.33 Aligned_cols=218 Identities=28% Similarity=0.374 Sum_probs=168.9
Q ss_pred cEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcch-hhhCCCCCCEEeCCCCCCCccch-hhhccccccEeecccCc
Q psy10956 127 EELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNR 204 (582)
Q Consensus 127 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~l~~~~ 204 (582)
...+..+..+..+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 346677777778887654 579999999999987765 78889999999999999886665 56678899999999998
Q ss_pred CcccC-ccccCCCCCCEEEccCCcCcccCc-cccCCCCccEEeccCccCcc--cCccccCCCCCcEEeCCCCCCCCcc-h
Q psy10956 205 IKTVH-PDIQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEE--LPKEIGNCTMLVTLDLQHNELVNIP-D 279 (582)
Q Consensus 205 ~~~~~-~~l~~l~~L~~L~l~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~--l~~~l~~~~~L~~L~l~~n~l~~i~-~ 279 (582)
+..++ ..+..+++|++|++++|.+..++. .++.+++|++|++++|.++. +|..++.+++|++|++++|.++.++ .
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 88665 457888899999999888886654 57788888888888888875 6777888888888888888888653 3
Q ss_pred hhcCCCCCc----EEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCcc
Q psy10956 280 MLGNLINLT----RLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTA 346 (582)
Q Consensus 280 ~~~~~~~L~----~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 346 (582)
.+..+++|+ .|++++|.++.++.......+|++|++++|.++.++...+..+++|++|++++|.++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 455555555 7888888888766555555578888888888877777767777777777777776654
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.6e-22 Score=193.16 Aligned_cols=199 Identities=28% Similarity=0.338 Sum_probs=104.7
Q ss_pred ccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeCCCCCCCccchhhhccccccEe
Q psy10956 120 VEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKIL 198 (582)
Q Consensus 120 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L 198 (582)
+++++++++++++++.++.+|..+. +++++|++++|.++.+ |..|.++++|++|++++|.++.++.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 3445555555555555555554332 4455555555555533 23455555555555555555544433 345555555
Q ss_pred ecccCcCcccCccccCCCCCCEEEccCCcCcccC-ccccCCCCccEEeccCccCcccCcc-ccCCCCCcEEeCCCCCCCC
Q psy10956 199 YLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELP-PELGELKNLVTLDLAHNHLEELPKE-IGNCTMLVTLDLQHNELVN 276 (582)
Q Consensus 199 ~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~ 276 (582)
++++|.+..+|..+..+++|++|++++|+++.++ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|+++.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 5555555555555555555555555555555443 2355555555555555555544432 3455555555555555555
Q ss_pred cch-hhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCC
Q psy10956 277 IPD-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALS 321 (582)
Q Consensus 277 i~~-~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~ 321 (582)
+|. .+..+++|+.|++++|.++.+|..+....+|+.+++++|.+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 543 234455555555555555555555555555555555555543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.6e-21 Score=189.97 Aligned_cols=202 Identities=25% Similarity=0.317 Sum_probs=124.9
Q ss_pred ccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCccc-CccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEE
Q psy10956 212 IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL-PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRL 290 (582)
Q Consensus 212 l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L 290 (582)
+.+++++++++++++.++.+|..+. ++++.|++++|.++.+ +..+..+++|++|++++|.++.++.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 3445556666666666665555443 4566666666666543 23455666666666666666655443 556666666
Q ss_pred EccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCC
Q psy10956 291 RLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDK 370 (582)
Q Consensus 291 ~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~ 370 (582)
++++|.++.+|..+..+++|++|++++|.++.++...+..+++|++|++++|.++..+...+..+++|+.|++++|.++.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 66666666666666666666666666666666665556666666666666666666655555566666666666666666
Q ss_pred CChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCC
Q psy10956 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQIS 416 (582)
Q Consensus 371 i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~ 416 (582)
++...|..+++|+.|++++|.++.+|..+....+|+.+++++|.+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 6666666666666666666666666666666666666666666554
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.5e-21 Score=184.95 Aligned_cols=199 Identities=23% Similarity=0.319 Sum_probs=109.4
Q ss_pred CCCCCccccCCCCCcEEEccCCCCcccCh-hccCCCCCCEEEccCCC-CCCcch-hhhCCCCCCEEeCCC-CCCCccch-
Q psy10956 113 ITHLPPSVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAENS-LTSLPD-SLANLQQLRVLDLRH-NKLNELPM- 187 (582)
Q Consensus 113 ~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~-l~~lp~-~l~~l~~L~~L~L~~-n~l~~l~~- 187 (582)
++.+|. +. ++|++|++++|.++.+|. .+..+++|++|++++|. ++.++. .|.++++|++|++++ |.++.++.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 455554 22 256666666666665543 45556666666666664 555543 455666666666665 56655543
Q ss_pred hhhccccccEeecccCcCcccCccccCCCCCC---EEEccCC-cCcccCcc-ccCCCCcc-EEeccCccCcccCccccCC
Q psy10956 188 VVYKLTSLKILYLRFNRIKTVHPDIQYLSNLS---MLSMRDN-KIRELPPE-LGELKNLV-TLDLAHNHLEELPKEIGNC 261 (582)
Q Consensus 188 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~i~~~-l~~l~~L~-~L~l~~n~l~~l~~~l~~~ 261 (582)
.+..+++|++|++++|.++.+|. +..+++|+ +|++++| .++.++.. +..+++|+ +|++++|.++.+|......
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 33455566666666666555543 55555555 6666666 55544432 55566666 6666666666555443333
Q ss_pred CCCcEEeCCCCC-CCCcc-hhhcCC-CCCcEEEccCCcCCcCCccccCCCCCCEEEecC
Q psy10956 262 TMLVTLDLQHNE-LVNIP-DMLGNL-INLTRLRLSYNRLESVPETLSKCVHLNEFNVEG 317 (582)
Q Consensus 262 ~~L~~L~l~~n~-l~~i~-~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~ 317 (582)
++|++|++++|+ ++.++ ..+..+ ++|+.|++++|.++.+|.. .+++|+.|++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 556666666663 55543 334555 5566666666655555443 344555555544
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-20 Score=181.46 Aligned_cols=158 Identities=29% Similarity=0.499 Sum_probs=64.9
Q ss_pred ccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCC
Q psy10956 304 LSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383 (582)
Q Consensus 304 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~ 383 (582)
+..+++|++|++++|.+..++...+..+++|++|++++|.++.+....+..+++|++|++++|.+..++...|..+++|+
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 33333444444444444333333333444444444444444433333333333444444444444433333334444444
Q ss_pred EEeccCCcCCccccc-ccCCCCCCEEECcCCCCCccchh-hhCCCCCCEEECcCCCCCcccc-ccCCCCCCCEEeCCCCC
Q psy10956 384 KVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSED-IQNLVNLEVLVLSNNLLKKLPS-SIGNLRKLKCLDLEENK 460 (582)
Q Consensus 384 ~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~ls~n~l~~i~~-~l~~~~~L~~L~L~~n~ 460 (582)
.|++++|.+..++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 444444444433221 33344444444444444433321 3344444444444444443332 23344444444444443
Q ss_pred C
Q psy10956 461 L 461 (582)
Q Consensus 461 l 461 (582)
+
T Consensus 217 ~ 217 (270)
T 2o6q_A 217 W 217 (270)
T ss_dssp B
T ss_pred e
Confidence 3
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.3e-23 Score=209.65 Aligned_cols=220 Identities=24% Similarity=0.298 Sum_probs=103.5
Q ss_pred CccEEEccCCCCCC-----CCccccCCCCCcEEEccCCCCc----ccChhc-------cCCCCCCEEEccCCCCCC----
Q psy10956 102 NILNLDLSKSSITH-----LPPSVEKLTHLEELYLYGNKLA----SLPSQI-------GYVTNLTCLGLAENSLTS---- 161 (582)
Q Consensus 102 ~l~~L~ls~~~~~~-----l~~~~~~l~~L~~L~l~~~~l~----~l~~~~-------~~l~~L~~L~l~~n~l~~---- 161 (582)
+|++|+|++|.++. ++..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.++.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 45555655555552 2223445555555555554332 223222 455555555555555553
Q ss_pred -cchhhhCCCCCCEEeCCCCCCCc-----cchhhhcc---------ccccEeecccCcCc--ccC---ccccCCCCCCEE
Q psy10956 162 -LPDSLANLQQLRVLDLRHNKLNE-----LPMVVYKL---------TSLKILYLRFNRIK--TVH---PDIQYLSNLSML 221 (582)
Q Consensus 162 -lp~~l~~l~~L~~L~L~~n~l~~-----l~~~~~~~---------~~L~~L~l~~~~~~--~~~---~~l~~l~~L~~L 221 (582)
+|..+.++++|++|+|++|.++. ++..+..+ ++|++|++++|.+. .++ ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 44455555555555555555541 12222222 45555555555554 222 233445555555
Q ss_pred EccCCcCc--c----cCccccCCCCccEEeccCccCc-----ccCccccCCCCCcEEeCCCCCCCC-----cchhhc--C
Q psy10956 222 SMRDNKIR--E----LPPELGELKNLVTLDLAHNHLE-----ELPKEIGNCTMLVTLDLQHNELVN-----IPDMLG--N 283 (582)
Q Consensus 222 ~l~~n~l~--~----i~~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~l~~-----i~~~~~--~ 283 (582)
++++|.+. . ++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++. ++..+. .
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 55555554 1 1113444555555555555542 334444445555555555555542 233332 2
Q ss_pred CCCCcEEEccCCcCCc-----CCccc-cCCCCCCEEEecCCCCC
Q psy10956 284 LINLTRLRLSYNRLES-----VPETL-SKCVHLNEFNVEGCALS 321 (582)
Q Consensus 284 ~~~L~~L~l~~n~l~~-----~~~~l-~~~~~L~~L~l~~~~~~ 321 (582)
+++|++|++++|.++. ++..+ .++++|++|++++|.++
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 4555555555555443 33333 33445555555555444
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2e-22 Score=201.38 Aligned_cols=243 Identities=19% Similarity=0.214 Sum_probs=124.8
Q ss_pred ccEEEccCCCCCCCCccccCC--CCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCC-C-cchhhhCCCCCCEEeCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKL--THLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT-S-LPDSLANLQQLRVLDLR 178 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~-~-lp~~l~~l~~L~~L~L~ 178 (582)
++.++++++.+. +..+..+ ++++.|++++|.+...+..+..+++|++|++++|.++ . +|..+.++++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 445555555444 2233333 4555555555555533333445555555555555554 1 44455555555555555
Q ss_pred CCCCC-ccchhhhccccccEeecccC-cCc--ccCccccCCCCCCEEEccCC-cCc--ccCccccCCC-CccEEeccCcc
Q psy10956 179 HNKLN-ELPMVVYKLTSLKILYLRFN-RIK--TVHPDIQYLSNLSMLSMRDN-KIR--ELPPELGELK-NLVTLDLAHNH 250 (582)
Q Consensus 179 ~n~l~-~l~~~~~~~~~L~~L~l~~~-~~~--~~~~~l~~l~~L~~L~l~~n-~l~--~i~~~l~~l~-~L~~L~l~~n~ 250 (582)
+|.++ ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++ .++..+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 55554 34444445555555555555 344 23333455555555555555 554 2344455555 66666666653
Q ss_pred --Cc--ccCccccCCCCCcEEeCCCCC-CC-CcchhhcCCCCCcEEEccCCc-CCc-CCccccCCCCCCEEEecCCCCCC
Q psy10956 251 --LE--ELPKEIGNCTMLVTLDLQHNE-LV-NIPDMLGNLINLTRLRLSYNR-LES-VPETLSKCVHLNEFNVEGCALSS 322 (582)
Q Consensus 251 --l~--~l~~~l~~~~~L~~L~l~~n~-l~-~i~~~~~~~~~L~~L~l~~n~-l~~-~~~~l~~~~~L~~L~l~~~~~~~ 322 (582)
++ .++..+..+++|++|++++|. ++ ..+..+..+++|++|++++|. +.. ....+..+++|++|++++| +.
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~- 284 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP- 284 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC-
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC-
Confidence 32 344445556666666666666 33 334455666666666666663 221 1123555666666666666 22
Q ss_pred CChhhhcCC-CCCCEEEccCCcCccCCCCC
Q psy10956 323 LPDGLLSSL-TSINNITLSRNKFTAYPSGG 351 (582)
Q Consensus 323 ~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~ 351 (582)
...+..+ ..++.|++++|.+++..+..
T Consensus 285 --~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 285 --DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp --TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred --HHHHHHHHhhCcceEEecccCccccCCc
Confidence 2112222 22444556666666654443
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=5.1e-21 Score=181.25 Aligned_cols=192 Identities=19% Similarity=0.296 Sum_probs=97.1
Q ss_pred CCCEEEccCCcCcccCc-cccCCCCccEEeccCcc-CcccCc-cccCCCCCcEEeCCC-CCCCCcc-hhhcCCCCCcEEE
Q psy10956 217 NLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNH-LEELPK-EIGNCTMLVTLDLQH-NELVNIP-DMLGNLINLTRLR 291 (582)
Q Consensus 217 ~L~~L~l~~n~l~~i~~-~l~~l~~L~~L~l~~n~-l~~l~~-~l~~~~~L~~L~l~~-n~l~~i~-~~~~~~~~L~~L~ 291 (582)
+|++|++++|.++.++. .+..+++|++|++++|. ++.++. .+..+++|++|++++ |.++.++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554433 34455555555555554 544443 344555555555555 5555443 2445555555555
Q ss_pred ccCCcCCcCCccccCCCCCC---EEEecCC-CCCCCChhhhcCCCCCC-EEEccCCcCccCCCCCCCCCCcccEEEcCCC
Q psy10956 292 LSYNRLESVPETLSKCVHLN---EFNVEGC-ALSSLPDGLLSSLTSIN-NITLSRNKFTAYPSGGPTQFTSVYSINFEHN 366 (582)
Q Consensus 292 l~~n~l~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 366 (582)
+++|.++++|. +..+++|+ +|++++| .+..++...+..+++|+ +|++++|.++.++...+.. ++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 55555555544 44555554 5555555 55555554455555555 5555555555444433333 45555555555
Q ss_pred C-CCCCChhhhhcC-CCCCEEeccCCcCCcccccccCCCCCCEEECcC
Q psy10956 367 Q-IDKIPYGIFSRA-KNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGT 412 (582)
Q Consensus 367 ~-i~~i~~~~~~~~-~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~ 412 (582)
. +..++...|..+ ++|+.|++++|.++.+|.. .+++|+.|++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 2 554444444444 4555555555544444332 334444444443
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3e-22 Score=204.09 Aligned_cols=240 Identities=20% Similarity=0.270 Sum_probs=196.7
Q ss_pred cCCCCCCCCccccCCCCCcEEEccCCCCc-c----cChhccCCCCCCEEEccCCCCC----Ccchhh-------hCCCCC
Q psy10956 109 SKSSITHLPPSVEKLTHLEELYLYGNKLA-S----LPSQIGYVTNLTCLGLAENSLT----SLPDSL-------ANLQQL 172 (582)
Q Consensus 109 s~~~~~~l~~~~~~l~~L~~L~l~~~~l~-~----l~~~~~~l~~L~~L~l~~n~l~----~lp~~l-------~~l~~L 172 (582)
+...+..++..+..+++|++|++++|.++ . ++..+..+++|++|++++|.+. .+|..+ .++++|
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 33334467778889999999999999988 3 3445778999999999998665 345444 789999
Q ss_pred CEEeCCCCCCCc-----cchhhhccccccEeecccCcCcc-----cCccccCC---------CCCCEEEccCCcCc--cc
Q psy10956 173 RVLDLRHNKLNE-----LPMVVYKLTSLKILYLRFNRIKT-----VHPDIQYL---------SNLSMLSMRDNKIR--EL 231 (582)
Q Consensus 173 ~~L~L~~n~l~~-----l~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~l---------~~L~~L~l~~n~l~--~i 231 (582)
++|+|++|.++. ++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.++ .+
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 999999999985 67788899999999999999872 22234444 89999999999997 44
Q ss_pred C---ccccCCCCccEEeccCccCc------ccCccccCCCCCcEEeCCCCCCC-----CcchhhcCCCCCcEEEccCCcC
Q psy10956 232 P---PELGELKNLVTLDLAHNHLE------ELPKEIGNCTMLVTLDLQHNELV-----NIPDMLGNLINLTRLRLSYNRL 297 (582)
Q Consensus 232 ~---~~l~~l~~L~~L~l~~n~l~------~l~~~l~~~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~l~~n~l 297 (582)
+ ..+..+++|++|++++|.++ .++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 4 35678999999999999998 23337889999999999999994 5788899999999999999999
Q ss_pred Cc-----CCccc--cCCCCCCEEEecCCCCCC-----CChhhhcCCCCCCEEEccCCcCccCC
Q psy10956 298 ES-----VPETL--SKCVHLNEFNVEGCALSS-----LPDGLLSSLTSINNITLSRNKFTAYP 348 (582)
Q Consensus 298 ~~-----~~~~l--~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~ 348 (582)
++ ++..+ ..+++|++|++++|.++. ++......+++|++|++++|.+++..
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 85 35556 348999999999999987 66665577899999999999998754
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=192.21 Aligned_cols=152 Identities=23% Similarity=0.282 Sum_probs=74.4
Q ss_pred ccccccEeecccCcCcccC-ccccCCCCCCEEEccCCcCcc---cC--ccccCCCCccEEeccCccCcccCcc----ccC
Q psy10956 191 KLTSLKILYLRFNRIKTVH-PDIQYLSNLSMLSMRDNKIRE---LP--PELGELKNLVTLDLAHNHLEELPKE----IGN 260 (582)
Q Consensus 191 ~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~---i~--~~l~~l~~L~~L~l~~n~l~~l~~~----l~~ 260 (582)
.+++|++|++++|.+..++ ..++.+++|++|++++|.+.. ++ ..+..+++|++|++++|.++.++.. ++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 3444444444444444332 234444555555555554431 11 1223455555555555555433221 234
Q ss_pred CCCCcEEeCCCCCCCCc-chhhcCC---CCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCE
Q psy10956 261 CTMLVTLDLQHNELVNI-PDMLGNL---INLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINN 336 (582)
Q Consensus 261 ~~~L~~L~l~~n~l~~i-~~~~~~~---~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 336 (582)
+++|++|++++|.+..+ |..+..+ ++|++|++++|.++.+|..+. ++|++|++++|.++.++. +..+++|++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch--hhhCCCccE
Confidence 45555555555555543 4434333 455555555555555554442 455566666665555433 345566666
Q ss_pred EEccCCcCcc
Q psy10956 337 ITLSRNKFTA 346 (582)
Q Consensus 337 L~l~~n~l~~ 346 (582)
|++++|.++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 6666665543
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=4.1e-21 Score=185.58 Aligned_cols=132 Identities=28% Similarity=0.462 Sum_probs=55.0
Q ss_pred CCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcch-hhcCCCCCcEEEc
Q psy10956 214 YLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRL 292 (582)
Q Consensus 214 ~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~l 292 (582)
.+++|+.|+++++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3344444444444444332 2334444444444444444331 33444444444444444443322 2344444444444
Q ss_pred cCCcCCcCCc-cccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccC
Q psy10956 293 SYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAY 347 (582)
Q Consensus 293 ~~n~l~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 347 (582)
++|.+++++. .+..+++|++|++++|.+..++...+..+++|++|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 4444443322 233444444444444444444433334444444444444444433
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.7e-20 Score=196.38 Aligned_cols=190 Identities=28% Similarity=0.437 Sum_probs=161.4
Q ss_pred hhhccCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEe
Q psy10956 97 RCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLD 176 (582)
Q Consensus 97 ~~~~~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~ 176 (582)
.|...+++.|++++|.++.+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.+ +|++|+
T Consensus 55 ~C~~~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 55 ECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp HHHHTTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred ccccCCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 444457999999999999999866 488999999999999988 567999999999999999988 665 899999
Q ss_pred CCCCCCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCc
Q psy10956 177 LRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPK 256 (582)
Q Consensus 177 L~~n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~ 256 (582)
+++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|++|++++|.++.+|.
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred CCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence 99999999887 68899999999999998876 67899999999999998887 65 899999999999998887
Q ss_pred cccCCCCC-------cEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCc-CCccccC
Q psy10956 257 EIGNCTML-------VTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLES-VPETLSK 306 (582)
Q Consensus 257 ~l~~~~~L-------~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~-~~~~l~~ 306 (582)
+.. +| ++|++++|.++.+|..+..+++|+.|++++|.+++ +|..+..
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 544 67 89999999999888888889999999999998875 4544433
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1e-20 Score=182.85 Aligned_cols=178 Identities=27% Similarity=0.422 Sum_probs=99.8
Q ss_pred ccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCc-cccCCCCCCEE
Q psy10956 235 LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEF 313 (582)
Q Consensus 235 l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L 313 (582)
...+++|+.|+++++.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+++++. .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345566666666666666553 3556666666666666666553 45666666666666666665443 34556666666
Q ss_pred EecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCC
Q psy10956 314 NVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393 (582)
Q Consensus 314 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~ 393 (582)
++++|.+..++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++.++...|..+++|+.|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 66666666555555555666666666666655555444455555555555555555544444444555555555555444
Q ss_pred cccc-cccCCCCCCEEECcCCC
Q psy10956 394 SLPL-DLGTWVGLTELNLGTNQ 414 (582)
Q Consensus 394 ~l~~-~~~~~~~L~~L~l~~n~ 414 (582)
+++. .+..+++|+.|++++|.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHHhCCcCCCEEEccCCC
Confidence 4322 23444444444444443
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=4.3e-21 Score=189.25 Aligned_cols=219 Identities=21% Similarity=0.222 Sum_probs=167.6
Q ss_pred cCccEEEccCCCCCC--CCc--cccCCCCCcEEEccCCCCc-ccChhc--cCCCCCCEEEccCCCCCC-cc----hhhhC
Q psy10956 101 ENILNLDLSKSSITH--LPP--SVEKLTHLEELYLYGNKLA-SLPSQI--GYVTNLTCLGLAENSLTS-LP----DSLAN 168 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~--l~~--~~~~l~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~l~~n~l~~-lp----~~l~~ 168 (582)
..++.+.+.++.++. +.. .+..+++|++|++++|.+. ..|..+ ..+++|++|++++|.++. .+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 457888888887762 211 1233567899999999888 556666 788889999999998874 22 34457
Q ss_pred CCCCCEEeCCCCCCCccc-hhhhccccccEeecccCcCcc---cC--ccccCCCCCCEEEccCCcCcccCcc----ccCC
Q psy10956 169 LQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFNRIKT---VH--PDIQYLSNLSMLSMRDNKIRELPPE----LGEL 238 (582)
Q Consensus 169 l~~L~~L~L~~n~l~~l~-~~~~~~~~L~~L~l~~~~~~~---~~--~~l~~l~~L~~L~l~~n~l~~i~~~----l~~l 238 (582)
+++|++|++++|.+..++ ..+..+++|++|++++|++.. ++ ..+..+++|++|++++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 888999999999888555 456688899999999988753 32 2246788899999999988755442 4677
Q ss_pred CCccEEeccCccCccc-CccccCC---CCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEE
Q psy10956 239 KNLVTLDLAHNHLEEL-PKEIGNC---TMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314 (582)
Q Consensus 239 ~~L~~L~l~~n~l~~l-~~~l~~~---~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ 314 (582)
++|++|++++|.++.+ |..++.+ ++|++|++++|.++.+|..+. ++|+.|++++|.++++|. +..+++|++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence 8999999999998865 6666665 689999999999998887664 789999999999988754 67888999999
Q ss_pred ecCCCCCC
Q psy10956 315 VEGCALSS 322 (582)
Q Consensus 315 l~~~~~~~ 322 (582)
+++|.++.
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 99988764
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.9e-21 Score=194.37 Aligned_cols=216 Identities=16% Similarity=0.207 Sum_probs=158.9
Q ss_pred CCcEEEccCCCCcccChhccCC--CCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCC-c-cchhhhccccccEeec
Q psy10956 125 HLEELYLYGNKLASLPSQIGYV--TNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLN-E-LPMVVYKLTSLKILYL 200 (582)
Q Consensus 125 ~L~~L~l~~~~l~~l~~~~~~l--~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~-l~~~~~~~~~L~~L~l 200 (582)
.++.++++++.+. +..+..+ +++++|++++|.+...+..+.++++|++|++++|.++ . ++..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4788999988776 3445555 7899999999988866666778889999999999887 2 7777788889999999
Q ss_pred ccCcCc-ccCccccCCCCCCEEEccCC-cCc--ccCccccCCCCccEEeccCc-cCcc--cCccccCCC-CCcEEeCCCC
Q psy10956 201 RFNRIK-TVHPDIQYLSNLSMLSMRDN-KIR--ELPPELGELKNLVTLDLAHN-HLEE--LPKEIGNCT-MLVTLDLQHN 272 (582)
Q Consensus 201 ~~~~~~-~~~~~l~~l~~L~~L~l~~n-~l~--~i~~~l~~l~~L~~L~l~~n-~l~~--l~~~l~~~~-~L~~L~l~~n 272 (582)
++|.+. ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 988877 45566777888888888888 566 35555777888888888888 7773 556667777 8888888888
Q ss_pred --CCC--CcchhhcCCCCCcEEEccCCc-CCc-CCccccCCCCCCEEEecCCC-CCCCChhhhcCCCCCCEEEccCC
Q psy10956 273 --ELV--NIPDMLGNLINLTRLRLSYNR-LES-VPETLSKCVHLNEFNVEGCA-LSSLPDGLLSSLTSINNITLSRN 342 (582)
Q Consensus 273 --~l~--~i~~~~~~~~~L~~L~l~~n~-l~~-~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n 342 (582)
.++ .++..+..+++|+.|++++|. +++ .+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 443 466677778888888888887 553 45566777778888887774 22111123555666666666665
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=8.4e-22 Score=198.79 Aligned_cols=243 Identities=19% Similarity=0.231 Sum_probs=148.2
Q ss_pred EEeCCCCCCCC-cchhhcCCCCCcEEEccCCcCCcCC-----ccccCCC-CCCEEEecCCCCCCCChhhhcCC-----CC
Q psy10956 266 TLDLQHNELVN-IPDMLGNLINLTRLRLSYNRLESVP-----ETLSKCV-HLNEFNVEGCALSSLPDGLLSSL-----TS 333 (582)
Q Consensus 266 ~L~l~~n~l~~-i~~~~~~~~~L~~L~l~~n~l~~~~-----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 333 (582)
.+++++|.+++ +|..+...++|++|++++|.+++.+ ..+..++ +|++|++++|.++......+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888885 4555566666999999999888755 4567777 89999999998887665545543 78
Q ss_pred CCEEEccCCcCccCCCCCC----CCC-CcccEEEcCCCCCCCCChhhhhc-----CCCCCEEeccCCcCCc-----cccc
Q psy10956 334 INNITLSRNKFTAYPSGGP----TQF-TSVYSINFEHNQIDKIPYGIFSR-----AKNLSKVNMKDNLLTS-----LPLD 398 (582)
Q Consensus 334 L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~~~i~~i~~~~~~~-----~~~L~~L~l~~n~l~~-----l~~~ 398 (582)
|++|++++|.+++.....+ ..+ ++|++|++++|.++..+...+.. +++|++|++++|.++. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888776543322 222 56777777777777655544322 3467777777776662 2333
Q ss_pred ccCCC-CCCEEECcCCCCCccc-----hhhhCC-CCCCEEECcCCCCCc-----cccccCC-CCCCCEEeCCCCCCCCCc
Q psy10956 399 LGTWV-GLTELNLGTNQISKLS-----EDIQNL-VNLEVLVLSNNLLKK-----LPSSIGN-LRKLKCLDLEENKLESLP 465 (582)
Q Consensus 399 ~~~~~-~L~~L~l~~n~l~~~~-----~~l~~~-~~L~~L~ls~n~l~~-----i~~~l~~-~~~L~~L~L~~n~l~~l~ 465 (582)
+..++ +|++|++++|.++... ..+..+ ++|++|++++|.++. ++..+.. .++|+.|++++|.++..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33443 6666666666665322 123344 366666666666653 4444443 346666666666665432
Q ss_pred c-----cccCCCcCCEEEccCCCCc--------cccccccCCCCCCEEECCCCCCC
Q psy10956 466 N-----EIGFLKELQRLILQSNQLV--------SLPRAIGHLTNLSYLSVGENNLQ 508 (582)
Q Consensus 466 ~-----~l~~~~~L~~L~l~~n~l~--------~i~~~l~~~~~L~~L~ls~n~l~ 508 (582)
. .+..+++|++|++++|.+. .++..+..+++|++|++++|.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 1 2345566666666666522 22234455555666666666554
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=1.7e-20 Score=182.93 Aligned_cols=190 Identities=29% Similarity=0.391 Sum_probs=135.4
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKL 182 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l 182 (582)
+..+.+..+.++++. .+..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|.+
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 334456666666543 2456788888888888888775 37778888888888888887766 88888888888888888
Q ss_pred CccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCC
Q psy10956 183 NELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCT 262 (582)
Q Consensus 183 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~ 262 (582)
+.++. +..+++|++|++++|.+..+ +.+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.++. +..++
T Consensus 103 ~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~ 178 (291)
T 1h6t_A 103 KDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLT 178 (291)
T ss_dssp CCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCT
T ss_pred CCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCC
Confidence 87664 56777888888888877765 3566777777777777777765 456667777777777777766544 66667
Q ss_pred CCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcC
Q psy10956 263 MLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV 300 (582)
Q Consensus 263 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~ 300 (582)
+|++|++++|.++.++. +..+++|+.|++++|.++..
T Consensus 179 ~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred ccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence 77777777776666643 66666666666666666543
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=3e-21 Score=194.76 Aligned_cols=244 Identities=17% Similarity=0.155 Sum_probs=121.2
Q ss_pred EEccCCcCCc-CCccccCCCCCCEEEecCCCCCCCCh----hhhcCCC-CCCEEEccCCcCccCCCCCCCCC-----Ccc
Q psy10956 290 LRLSYNRLES-VPETLSKCVHLNEFNVEGCALSSLPD----GLLSSLT-SINNITLSRNKFTAYPSGGPTQF-----TSV 358 (582)
Q Consensus 290 L~l~~n~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L 358 (582)
+.+++|.+++ +|..+...++|++|++++|.++..+. ..+..++ +|++|++++|.+++.....+... ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555554 33333334446666666666655554 4445555 56666666665555433333322 556
Q ss_pred cEEEcCCCCCCCCChhhh----hcC-CCCCEEeccCCcCCcccc-----cccC-CCCCCEEECcCCCCC-----ccchhh
Q psy10956 359 YSINFEHNQIDKIPYGIF----SRA-KNLSKVNMKDNLLTSLPL-----DLGT-WVGLTELNLGTNQIS-----KLSEDI 422 (582)
Q Consensus 359 ~~L~l~~~~i~~i~~~~~----~~~-~~L~~L~l~~n~l~~l~~-----~~~~-~~~L~~L~l~~n~l~-----~~~~~l 422 (582)
++|++++|.++......+ ..+ ++|+.|++++|.++..+. .+.. .++|++|++++|.++ .++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666666554443322 222 556666666665554321 1222 245666666666555 222233
Q ss_pred hCCC-CCCEEECcCCCCCccc-----cccCCC-CCCCEEeCCCCCCCC-----CcccccC-CCcCCEEEccCCCCcccc-
Q psy10956 423 QNLV-NLEVLVLSNNLLKKLP-----SSIGNL-RKLKCLDLEENKLES-----LPNEIGF-LKELQRLILQSNQLVSLP- 488 (582)
Q Consensus 423 ~~~~-~L~~L~ls~n~l~~i~-----~~l~~~-~~L~~L~L~~n~l~~-----l~~~l~~-~~~L~~L~l~~n~l~~i~- 488 (582)
..++ +|++|++++|.++... ..+..+ ++|+.|++++|.++. ++..+.. .++|++|++++|.++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3343 5666666666555221 123334 356666666665553 3333333 235666666666555321
Q ss_pred ----ccccCCCCCCEEECCCCCCC--------cCcccccCCCCCCEEeCCCCCCCCC
Q psy10956 489 ----RAIGHLTNLSYLSVGENNLQ--------SIPEEIGTLENLHTLYLNDNTCLNN 533 (582)
Q Consensus 489 ----~~l~~~~~L~~L~ls~n~l~--------~i~~~~~~l~~L~~L~l~~n~~~~~ 533 (582)
..+..+++|++|++++|.+. .++..+..+++|++|++++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 23345555666666666522 1223344555566666666654433
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=9.1e-20 Score=192.41 Aligned_cols=186 Identities=28% Similarity=0.353 Sum_probs=155.4
Q ss_pred CCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccchhhhccccccEeecccC
Q psy10956 124 THLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFN 203 (582)
Q Consensus 124 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~ 203 (582)
.+|+.|++++|.++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 389999999999998887663 88999999999999998 567899999999999998887 544 8999999999
Q ss_pred cCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcC
Q psy10956 204 RIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGN 283 (582)
Q Consensus 204 ~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~ 283 (582)
.++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|++|++++|.++.+|. +..
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH
Confidence 9998876 68899999999999998876 57889999999999998887 65 889999999999998887 544
Q ss_pred CCCC-------cEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhc
Q psy10956 284 LINL-------TRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLS 329 (582)
Q Consensus 284 ~~~L-------~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 329 (582)
+| +.|++++|.++.+|..+..+++|+.|++++|.+....+..+.
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 67 889999999888888888888889999988888754443343
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.7e-19 Score=174.32 Aligned_cols=171 Identities=31% Similarity=0.504 Sum_probs=155.8
Q ss_pred cCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCC
Q psy10956 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n 180 (582)
.+++.|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. +..+++|++|++++|
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence 569999999999998864 8889999999999999998876 9999999999999999999865 999999999999999
Q ss_pred CCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccC
Q psy10956 181 KLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260 (582)
Q Consensus 181 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~ 260 (582)
.++.++ .+..+++|++|++++|.+..+ +.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..
T Consensus 123 ~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~-~l~~ 198 (291)
T 1h6t_A 123 GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAG 198 (291)
T ss_dssp CCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTT
T ss_pred cCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh-hhcc
Confidence 999875 567899999999999999987 578999999999999999997766 889999999999999999886 4889
Q ss_pred CCCCcEEeCCCCCCCCcc
Q psy10956 261 CTMLVTLDLQHNELVNIP 278 (582)
Q Consensus 261 ~~~L~~L~l~~n~l~~i~ 278 (582)
+++|+.|++++|.+...|
T Consensus 199 l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 199 LKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CTTCSEEEEEEEEEECCC
T ss_pred CCCCCEEECcCCcccCCc
Confidence 999999999999887544
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1e-18 Score=166.54 Aligned_cols=172 Identities=30% Similarity=0.446 Sum_probs=124.5
Q ss_pred CccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeCCC
Q psy10956 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRH 179 (582)
Q Consensus 102 ~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L~~ 179 (582)
..++++++++.++.+|..+. +.++.|++++|.+..++ ..+..+++|++|++++|.++.++ ..|.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46789999999998887665 68899999999888554 46788888888888888888654 4578888888888888
Q ss_pred CCCCccchh-hhccccccEeecccCcCcccCcc-ccCCCCCCEEEccCCcCcccCc-cccCCCCccEEeccCccCcccCc
Q psy10956 180 NKLNELPMV-VYKLTSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELPK 256 (582)
Q Consensus 180 n~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~l~~ 256 (582)
|.++.++.. +..+++|++|++++|.++.+++. +..+++|++|++++|.++.++. .+..+++|++|++++|.++.++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 888866643 45677777777777777766554 4667777777777777765554 35666666666666666665544
Q ss_pred -cccCCCCCcEEeCCCCCCC
Q psy10956 257 -EIGNCTMLVTLDLQHNELV 275 (582)
Q Consensus 257 -~l~~~~~L~~L~l~~n~l~ 275 (582)
.+..+++|++|++++|.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBC
T ss_pred HHHhCCCCCCEEEeeCCcee
Confidence 4555666666666666654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.1e-19 Score=177.44 Aligned_cols=233 Identities=18% Similarity=0.227 Sum_probs=109.5
Q ss_pred EeccCccCcccCccccCCCCCcEEeCCCCCCCCcch-hhcCCCCCcEEEccCCcCCc-CC-ccccCCCCCCE-EEecCCC
Q psy10956 244 LDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLES-VP-ETLSKCVHLNE-FNVEGCA 319 (582)
Q Consensus 244 L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~-~~-~~l~~~~~L~~-L~l~~~~ 319 (582)
++.++++++++|..+ .+++++|++++|+++.+|. .|..+++|++|++++|.+.+ ++ ..+.+++++++ +.+.+|.
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 333444444444333 1234444444444444432 23444444444444444322 22 12334444333 2333344
Q ss_pred CCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCC-CCCCCCChhhhhcCC-CCCEEeccCCcCCcccc
Q psy10956 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEH-NQIDKIPYGIFSRAK-NLSKVNMKDNLLTSLPL 397 (582)
Q Consensus 320 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-~~i~~i~~~~~~~~~-~L~~L~l~~n~l~~l~~ 397 (582)
+..+++..+..+++|++|++++|.++......+....++..+++.+ +.+..++...|..+. .++.|++++|.++.++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence 4444444445555555555555555544444444444444555533 344444444444332 45556666666665555
Q ss_pred cccCCCCCCEEECc-CCCCCccchh-hhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCC-CCCCCcccccCCCcC
Q psy10956 398 DLGTWVGLTELNLG-TNQISKLSED-IQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEEN-KLESLPNEIGFLKEL 474 (582)
Q Consensus 398 ~~~~~~~L~~L~l~-~n~l~~~~~~-l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n-~l~~l~~~l~~~~~L 474 (582)
......+|+++++. +|.++.++.. +..+++|++|++++|+++.+|.. .+.+|+.|.+.++ .+..+|. +..+++|
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVAL 248 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-chhCcCh
Confidence 44445556666654 3455555542 45556666666666666655542 2345555554443 2344542 4555566
Q ss_pred CEEEccC
Q psy10956 475 QRLILQS 481 (582)
Q Consensus 475 ~~L~l~~ 481 (582)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 6665554
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=8.4e-19 Score=175.85 Aligned_cols=236 Identities=20% Similarity=0.215 Sum_probs=156.9
Q ss_pred cEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCcc-CCCCCCCCCCcccE-EEcCC
Q psy10956 288 TRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTA-YPSGGPTQFTSVYS-INFEH 365 (582)
Q Consensus 288 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~-L~l~~ 365 (582)
++++.++++++.+|..+ .+++++|++++|.++.++..+|.++++|++|++++|.+.+ ++...|..++++.+ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56788888888888765 3678888999888888888878888888888888888754 55556677776665 44556
Q ss_pred CCCCCCChhhhhcCCCCCEEeccCCcCCcccc-cccCCCCCCEEECcC-CCCCccchh-hhCC-CCCCEEECcCCCCCcc
Q psy10956 366 NQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLGT-NQISKLSED-IQNL-VNLEVLVLSNNLLKKL 441 (582)
Q Consensus 366 ~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~-n~l~~~~~~-l~~~-~~L~~L~ls~n~l~~i 441 (582)
|++..++...|..+++|+.|++++|.+..++. .+.....+..+++.+ +.+..++.. +..+ ..++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 77777777777778888888888887776543 344455666677654 455554432 3333 3566677777777766
Q ss_pred ccccCCCCCCCEEeCCC-CCCCCCccc-ccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCC-CCCcCcccccCCC
Q psy10956 442 PSSIGNLRKLKCLDLEE-NKLESLPNE-IGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGEN-NLQSIPEEIGTLE 518 (582)
Q Consensus 442 ~~~l~~~~~L~~L~L~~-n~l~~l~~~-l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n-~l~~i~~~~~~l~ 518 (582)
+.......+|+.+++.+ |.++.+|.. ++.+++|++|++++|+++.+|.. .+.+|+.|.+.++ ++..+|. +..++
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~ 246 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLV 246 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-chhCc
Confidence 66555566677777764 456666653 46667777777777777766642 2445555555444 3445553 56666
Q ss_pred CCCEEeCCCC
Q psy10956 519 NLHTLYLNDN 528 (582)
Q Consensus 519 ~L~~L~l~~n 528 (582)
+|+.+++.++
T Consensus 247 ~L~~l~l~~~ 256 (350)
T 4ay9_X 247 ALMEASLTYP 256 (350)
T ss_dssp SCCEEECSCH
T ss_pred ChhhCcCCCC
Confidence 7777776543
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=3.2e-18 Score=163.13 Aligned_cols=174 Identities=26% Similarity=0.464 Sum_probs=82.5
Q ss_pred CcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCC
Q psy10956 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHN 366 (582)
Q Consensus 287 L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 366 (582)
.+.++++++.++.+|..+. +.++.|++++|.+..++...+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3444444444444443332 34455555555554444444445555555555555555544444444445555555555
Q ss_pred CCCCCChhhhhcCCCCCEEeccCCcCCccccc-ccCCCCCCEEECcCCCCCccch-hhhCCCCCCEEECcCCCCCcccc-
Q psy10956 367 QIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSE-DIQNLVNLEVLVLSNNLLKKLPS- 443 (582)
Q Consensus 367 ~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~ls~n~l~~i~~- 443 (582)
.+..++...|..+++|+.|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|++++|.++.++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 55444444444455555555555555444322 3344444455554444444333 24444455555555554443332
Q ss_pred ccCCCCCCCEEeCCCCCCC
Q psy10956 444 SIGNLRKLKCLDLEENKLE 462 (582)
Q Consensus 444 ~l~~~~~L~~L~L~~n~l~ 462 (582)
.+..+++|+.|++++|.+.
T Consensus 174 ~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSCCBC
T ss_pred HHhCCCCCCEEEeeCCcee
Confidence 3444445555555554443
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=3.1e-19 Score=190.47 Aligned_cols=190 Identities=29% Similarity=0.388 Sum_probs=136.5
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKL 182 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l 182 (582)
+..+.+..+.+..+.. +..+++|+.|++++|.+..++ .+..+++|++|+|++|.++.++. +..+++|+.|+|++|.+
T Consensus 23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 4445566666665432 456777777888887777665 46777888888888887777765 77778888888888877
Q ss_pred CccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCC
Q psy10956 183 NELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCT 262 (582)
Q Consensus 183 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~ 262 (582)
..++ .+..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|.+..++. +..++
T Consensus 100 ~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~ 175 (605)
T 1m9s_A 100 KDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLT 175 (605)
T ss_dssp CCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCT
T ss_pred CCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCC
Confidence 7665 456777778888877777765 3577777777777777777766 556777777777777777776644 67777
Q ss_pred CCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcC
Q psy10956 263 MLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV 300 (582)
Q Consensus 263 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~ 300 (582)
+|+.|+|++|.+..++ .+..+++|+.|++++|.+...
T Consensus 176 ~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 176 KLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 7777777777777764 467777777777777776653
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=1.8e-19 Score=172.83 Aligned_cols=169 Identities=28% Similarity=0.413 Sum_probs=107.1
Q ss_pred cCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCC
Q psy10956 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n 180 (582)
.++..++++++.+++++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +.++++|++|++++|
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 34666778888887776 4677888888888888887776 57777888888888888877766 777778888888887
Q ss_pred CCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccC
Q psy10956 181 KLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260 (582)
Q Consensus 181 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~ 260 (582)
+++.++.... ++|++|++++|.++.++ .+..+++|++|++++|.++.+ + .+..
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-----------------------~-~l~~ 148 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-----------------------V-MLGF 148 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-----------------------G-GGGG
T ss_pred ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-----------------------h-HHcc
Confidence 7776654332 56666666666555442 344555555555555555444 2 3444
Q ss_pred CCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcC
Q psy10956 261 CTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV 300 (582)
Q Consensus 261 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~ 300 (582)
+++|++|++++|.+..+ ..+..+++|+.|++++|.++..
T Consensus 149 l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 45555555555555544 3345555555555555555443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.7e-18 Score=184.88 Aligned_cols=195 Identities=23% Similarity=0.297 Sum_probs=164.8
Q ss_pred CCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccchhhhccccccEeecccC
Q psy10956 124 THLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFN 203 (582)
Q Consensus 124 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~ 203 (582)
..+..+.+..+.+..+.. +..+++|++|++++|.+..+| .+..+++|+.|+|++|.++.++. +..+++|+.|++++|
T Consensus 21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 344555666666664432 467889999999999999886 58999999999999999998876 778999999999999
Q ss_pred cCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcC
Q psy10956 204 RIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGN 283 (582)
Q Consensus 204 ~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~ 283 (582)
.+..++ .+..+++|++|++++|.+..+ ..+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.+..++. +..
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~ 173 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAG 173 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hcc
Confidence 998765 788999999999999999876 4588899999999999999987 678889999999999999987766 888
Q ss_pred CCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChh
Q psy10956 284 LINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDG 326 (582)
Q Consensus 284 ~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 326 (582)
+++|+.|+|++|.+++++ .+..+++|+.|++++|.+...+..
T Consensus 174 l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCC
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCccc
Confidence 999999999999998874 688889999999999988766544
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=7.1e-19 Score=168.61 Aligned_cols=171 Identities=26% Similarity=0.310 Sum_probs=124.6
Q ss_pred CCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCc
Q psy10956 148 NLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNK 227 (582)
Q Consensus 148 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~ 227 (582)
+++.++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+..+++ +..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 3444455555555544 3455555666666666555555 34455666666666666655544 6666667777777777
Q ss_pred CcccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCC
Q psy10956 228 IRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKC 307 (582)
Q Consensus 228 l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~ 307 (582)
++.++.... ++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.++++ ..+..+
T Consensus 97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l 171 (263)
T 1xeu_A 97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRL 171 (263)
T ss_dssp CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTC
T ss_pred cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccC
Confidence 666554332 78888888888888774 5888999999999999999886 689999999999999999988 778899
Q ss_pred CCCCEEEecCCCCCCCChh
Q psy10956 308 VHLNEFNVEGCALSSLPDG 326 (582)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~ 326 (582)
++|+.|++++|.+...+..
T Consensus 172 ~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp CCCCEEEEEEEEEECCCEE
T ss_pred CCCCEEeCCCCcccCCccc
Confidence 9999999999998876654
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.7e-17 Score=151.85 Aligned_cols=146 Identities=18% Similarity=0.306 Sum_probs=75.3
Q ss_pred CccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCC-cchhhhCCCCCCEEeCCCC
Q psy10956 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS-LPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 102 ~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~L~~n 180 (582)
++++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..++.+++|++|++++|
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 4555666666655555 4555556666666655444332 45555555555555555552 4445555555555555555
Q ss_pred CCC-ccchhhhccccccEeecccCc-CcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccC
Q psy10956 181 KLN-ELPMVVYKLTSLKILYLRFNR-IKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHL 251 (582)
Q Consensus 181 ~l~-~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l 251 (582)
.++ ..+..+..+++|++|++++|. +..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 555 244444455555555555554 44433 3444555555555555544443 344444444444444443
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.4e-17 Score=152.36 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=49.7
Q ss_pred cCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCc-cchhhhccccccEee
Q psy10956 121 EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNE-LPMVVYKLTSLKILY 199 (582)
Q Consensus 121 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-l~~~~~~~~~L~~L~ 199 (582)
..+++|++|++++|.+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 44555666666666555555 4555555555555555444442 44555555555555555542 333333444444444
Q ss_pred cccCcCcc-cCccccCCCCCCEEEccCC
Q psy10956 200 LRFNRIKT-VHPDIQYLSNLSMLSMRDN 226 (582)
Q Consensus 200 l~~~~~~~-~~~~l~~l~~L~~L~l~~n 226 (582)
+++|.+.. .+..+..+++|++|++++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 44444432 2223333334444444433
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=6.3e-20 Score=194.71 Aligned_cols=121 Identities=29% Similarity=0.391 Sum_probs=95.4
Q ss_pred CCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCc
Q psy10956 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNR 296 (582)
Q Consensus 217 ~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~ 296 (582)
.|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|++|++++|.++++| .++.+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 47788888888888776 78888888888888888888888888888888888888888877 67888888888888888
Q ss_pred CCcC--CccccCCCCCCEEEecCCCCCCCChh---hhcCCCCCCEEEc
Q psy10956 297 LESV--PETLSKCVHLNEFNVEGCALSSLPDG---LLSSLTSINNITL 339 (582)
Q Consensus 297 l~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l 339 (582)
++++ |..+..+++|+.|++++|.+..+++. .+..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8876 77788888888888888888766542 2344778887753
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=2.2e-19 Score=190.53 Aligned_cols=121 Identities=27% Similarity=0.269 Sum_probs=74.4
Q ss_pred CccEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCC
Q psy10956 240 NLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCA 319 (582)
Q Consensus 240 ~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~ 319 (582)
.|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.++++| .++.+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 36666666666666654 66666666666666666666666666666666666666666665 56666666666666666
Q ss_pred CCCCC-hhhhcCCCCCCEEEccCCcCccCCCCCC---CCCCcccEEE
Q psy10956 320 LSSLP-DGLLSSLTSINNITLSRNKFTAYPSGGP---TQFTSVYSIN 362 (582)
Q Consensus 320 ~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~ 362 (582)
++.+. +..+..+++|+.|++++|.+++.++... ..+++|+.|+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 66553 3345666666666666666665543221 1245555554
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=9.5e-17 Score=148.26 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=58.7
Q ss_pred hcCCCCCEEeccCCcCCcccc-cccCCCCCCEEECcCCCCCccchh-hhCCCCCCEEECcCCCCCcccc-ccCCCCCCCE
Q psy10956 377 SRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLGTNQISKLSED-IQNLVNLEVLVLSNNLLKKLPS-SIGNLRKLKC 453 (582)
Q Consensus 377 ~~~~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~ls~n~l~~i~~-~l~~~~~L~~ 453 (582)
..+++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|+.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 334444444444444443322 234444555555555555544332 4455666666666666665543 2555666666
Q ss_pred EeCCCCCCCCCcccccCCCcCCEEEccCCCCc-cccccccCCC
Q psy10956 454 LDLEENKLESLPNEIGFLKELQRLILQSNQLV-SLPRAIGHLT 495 (582)
Q Consensus 454 L~L~~n~l~~l~~~l~~~~~L~~L~l~~n~l~-~i~~~l~~~~ 495 (582)
|++++|.+. +.+++|++|+++.|+++ .+|..++.++
T Consensus 153 L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 153 IWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp EECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred EEecCCCee------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 666666433 23456666666666665 5565555443
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2e-16 Score=148.25 Aligned_cols=146 Identities=29% Similarity=0.450 Sum_probs=83.2
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcch-hhhCCCCCCEEeCCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRVLDLRHN 180 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L~~n 180 (582)
.+.++++++.++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.++.+|. .|..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3457777777777776443 6677777777777744 4556667777777777777766653 3566666777777666
Q ss_pred CCCccchh-hhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCc-cccCCCCccEEeccCcc
Q psy10956 181 KLNELPMV-VYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNH 250 (582)
Q Consensus 181 ~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~-~l~~l~~L~~L~l~~n~ 250 (582)
+++.++.. +..+++|++|++++|.+..+|..+..+++|++|++++|.+..++. .+..+++|+.|++++|.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 66655443 234555555555555555444444444444444444444443332 23333444444444333
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.1e-16 Score=147.79 Aligned_cols=102 Identities=29% Similarity=0.505 Sum_probs=46.0
Q ss_pred EEeccCccCcccCccccCCCCCcEEeCCCCCCCCcch-hhcCCCCCcEEEccCCcCCcCCc-cccCCCCCCEEEecCCCC
Q psy10956 243 TLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCAL 320 (582)
Q Consensus 243 ~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~~~~ 320 (582)
.++++++.++.+|..+ .++|++|++++|.+..++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4445555555554433 2345555555555554432 23445555555555555444332 233444444444444444
Q ss_pred CCCChhhhcCCCCCCEEEccCCcCcc
Q psy10956 321 SSLPDGLLSSLTSINNITLSRNKFTA 346 (582)
Q Consensus 321 ~~~~~~~~~~~~~L~~L~l~~n~l~~ 346 (582)
..++...+..+++|++|++++|.+++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQS 114 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcc
Confidence 44443333344444444444444333
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.7e-16 Score=147.60 Aligned_cols=146 Identities=29% Similarity=0.477 Sum_probs=97.7
Q ss_pred cEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccCh-hccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeCCCCC
Q psy10956 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPS-QIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRHNK 181 (582)
Q Consensus 104 ~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L~~n~ 181 (582)
+.++++++.++.+|..+. ++|+.|++++|.++.++. .+..+++|++|++++|+++.+ |..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467888888888886554 678888888888886654 577778888888888888755 6677778888888888887
Q ss_pred CCccchhh-hccccccEeecccCcCcccC-ccccCCCCCCEEEccCCcCcccCc-cccCCCCccEEeccCccC
Q psy10956 182 LNELPMVV-YKLTSLKILYLRFNRIKTVH-PDIQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHL 251 (582)
Q Consensus 182 l~~l~~~~-~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~i~~-~l~~l~~L~~L~l~~n~l 251 (582)
++.+|... ..+++|++|++++|.+..++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 77776543 45666777777766666543 345555666666666666554433 244455555555555544
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=1.8e-16 Score=147.50 Aligned_cols=147 Identities=27% Similarity=0.395 Sum_probs=96.7
Q ss_pred cEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccC--hhccCCCCCCEEEccCCCCCCcch-hhhCCCCCCEEeCCCC
Q psy10956 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLP--SQIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRVLDLRHN 180 (582)
Q Consensus 104 ~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L~~n 180 (582)
+.++++++.++.+|..+. +.+++|++++|.++.++ ..+..+++|++|++++|.++.++. .|.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 468888888888886553 34678888888888653 336777888888888888876654 6777778888888888
Q ss_pred CCCccchh-hhccccccEeecccCcCccc-CccccCCCCCCEEEccCCcCccc-CccccCCCCccEEeccCccCc
Q psy10956 181 KLNELPMV-VYKLTSLKILYLRFNRIKTV-HPDIQYLSNLSMLSMRDNKIREL-PPELGELKNLVTLDLAHNHLE 252 (582)
Q Consensus 181 ~l~~l~~~-~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~i-~~~l~~l~~L~~L~l~~n~l~ 252 (582)
.++.++.. +..+++|++|++++|.+..+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 77765543 45566677777666666644 33455556666666666655544 344555555555555555443
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=3.1e-16 Score=146.98 Aligned_cols=150 Identities=34% Similarity=0.478 Sum_probs=87.1
Q ss_pred CCEEeccCCcCCcccccccCCCCCCEEECcCCCCCcc-chhhhCCCCCCEEECcCCCCCcccc-ccCCCCCCCEEeCCCC
Q psy10956 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKL-SEDIQNLVNLEVLVLSNNLLKKLPS-SIGNLRKLKCLDLEEN 459 (582)
Q Consensus 382 L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~ls~n~l~~i~~-~l~~~~~L~~L~L~~n 459 (582)
-+.++.+++.++.+|..+. ++|++|++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3456666666666654333 5666666666666644 3445556666666666666665543 3455666666666666
Q ss_pred CCCCCccc-ccCCCcCCEEEccCCCCccccccccCCCCCCEEECCCCCCCcCc-ccccCCCCCCEEeCCCCCCCCC
Q psy10956 460 KLESLPNE-IGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIP-EEIGTLENLHTLYLNDNTCLNN 533 (582)
Q Consensus 460 ~l~~l~~~-l~~~~~L~~L~l~~n~l~~i~~~l~~~~~L~~L~ls~n~l~~i~-~~~~~l~~L~~L~l~~n~~~~~ 533 (582)
+++.++.. +..+++|++|++++|++..+|..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|++.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 66655443 45566666666666666666655566666666666666665554 2345556666666666655443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.1e-16 Score=161.12 Aligned_cols=170 Identities=31% Similarity=0.415 Sum_probs=119.6
Q ss_pred cEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChh-cc-CCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeCCCC
Q psy10956 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ-IG-YVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHN 180 (582)
Q Consensus 104 ~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~-~~-~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L~~n 180 (582)
+.++++++.++.+|..+. +.++.|+|++|.++.++.. +. .+++|++|++++|.++.++ ..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 568888888888887553 4578888888888866544 44 7888888888888888665 45888888888888888
Q ss_pred CCCccch-hhhccccccEeecccCcCccc-CccccCCCCCCEEEccCCcCcccCccc----cCCCCccEEeccCccCccc
Q psy10956 181 KLNELPM-VVYKLTSLKILYLRFNRIKTV-HPDIQYLSNLSMLSMRDNKIRELPPEL----GELKNLVTLDLAHNHLEEL 254 (582)
Q Consensus 181 ~l~~l~~-~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~i~~~l----~~l~~L~~L~l~~n~l~~l 254 (582)
+++.++. .+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.+|..+ ..+++|+.|++++|.++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8886655 355677888888888877755 345677777777777777777666553 3566666777776666655
Q ss_pred Cc-cccCCCC--CcEEeCCCCCCC
Q psy10956 255 PK-EIGNCTM--LVTLDLQHNELV 275 (582)
Q Consensus 255 ~~-~l~~~~~--L~~L~l~~n~l~ 275 (582)
|. .+..++. ++.|++.+|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 53 3444444 355666666554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=146.41 Aligned_cols=149 Identities=24% Similarity=0.347 Sum_probs=86.8
Q ss_pred CEEeccCCcCCcccccccCCCCCCEEECcCCCCCccc--hhhhCCCCCCEEECcCCCCCcccc-ccCCCCCCCEEeCCCC
Q psy10956 383 SKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLS--EDIQNLVNLEVLVLSNNLLKKLPS-SIGNLRKLKCLDLEEN 459 (582)
Q Consensus 383 ~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~ls~n~l~~i~~-~l~~~~~L~~L~L~~n 459 (582)
+.+++++|.++.+|..+. ..+++|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 356666666666665432 24566666666666542 225566666666666666665533 4566666666666666
Q ss_pred CCCCCcc-cccCCCcCCEEEccCCCCccc-cccccCCCCCCEEECCCCCCCcC-cccccCCCCCCEEeCCCCCCCCC
Q psy10956 460 KLESLPN-EIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNLQSI-PEEIGTLENLHTLYLNDNTCLNN 533 (582)
Q Consensus 460 ~l~~l~~-~l~~~~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~ls~n~l~~i-~~~~~~l~~L~~L~l~~n~~~~~ 533 (582)
.++.++. .+..+++|++|++++|+++.+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|++.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 6665443 255566666666666666544 34555566666666666666544 44555566666666666655543
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=3.9e-18 Score=186.67 Aligned_cols=263 Identities=23% Similarity=0.213 Sum_probs=127.1
Q ss_pred HHHhhHHHHHHHHHHcccccCCCC-CCCCCCCCCCCCcccCCC-----CCeEEEEEcCCCCCCCCCCCCCCCccccccch
Q psy10956 19 ERLASYREESSTALLNSDSSRSDE-YGYFEDMPEKDNKKCGVD-----VKKTVTVKHPESNKPKPTTKKKEPIQADLNIE 92 (582)
Q Consensus 19 ~~~~~~~~~~~~aLl~~k~~~~~~-~~~l~~w~~~~~~~c~~~-----~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (582)
+...+....++++|+++..+...+ +..-..|.......+.|. ..+++.+++.......... ..
T Consensus 124 ~~s~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~-----------~~ 192 (727)
T 4b8c_D 124 EASKSLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEANQ-----------AL 192 (727)
T ss_dssp --------CCCHHHHHHHHHHHHHHTTC----------------------------------------------------
T ss_pred chhhhccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcchh-----------hH
Confidence 333456677999999998776322 222234432222222222 2345555554332221000 00
Q ss_pred HHHhhhhccCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCC
Q psy10956 93 KEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQL 172 (582)
Q Consensus 93 ~~~~~~~~~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L 172 (582)
..........+..++++.+.+...+..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.++.+|..|+++++|
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 272 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNL 272 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTC
T ss_pred hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCC
Confidence 00011111234444444555554566788889999999999999888888888999999999999999999889999999
Q ss_pred CEEeCCCCCCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCc-ccCccccCCC-CccEEeccCcc
Q psy10956 173 RVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIR-ELPPELGELK-NLVTLDLAHNH 250 (582)
Q Consensus 173 ~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~i~~~l~~l~-~L~~L~l~~n~ 250 (582)
++|+|++|.++.+|..++.+++|++|+|++|.++.+|..++.+++|+.|++++|.++ .+|..+..+. .+..+++++|.
T Consensus 273 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 273 RVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp CEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc
Confidence 999999999998888888899999999999999988888999999999999999988 4455444332 12346777887
Q ss_pred Cc-ccCccccCCCCCcEEeCCCC--------CCCC-cchhhcCCCCCcEEEccCCcCC
Q psy10956 251 LE-ELPKEIGNCTMLVTLDLQHN--------ELVN-IPDMLGNLINLTRLRLSYNRLE 298 (582)
Q Consensus 251 l~-~l~~~l~~~~~L~~L~l~~n--------~l~~-i~~~~~~~~~L~~L~l~~n~l~ 298 (582)
++ .+| ..|+.|+++.| .+.. .+..+..+..+....+++|.+.
T Consensus 353 l~~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 353 PEIPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCCC------CC-----------------------------------------CCC
T ss_pred ccCcCc------cccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 76 333 34566666665 1111 1223344555555666666554
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=5.8e-16 Score=144.04 Aligned_cols=126 Identities=21% Similarity=0.403 Sum_probs=53.7
Q ss_pred EEEccCCcCcccCccccCCCCccEEeccCccCcccCc-cccCCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcC
Q psy10956 220 MLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRL 297 (582)
Q Consensus 220 ~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l 297 (582)
.++++++.++.+|..+. ++++.|++++|.++.++. .+..+++|++|++++|.+..+ |..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 44445555544444332 344445554444444332 344444444444444444433 33444444444444444444
Q ss_pred CcCCcc-ccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccC
Q psy10956 298 ESVPET-LSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAY 347 (582)
Q Consensus 298 ~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 347 (582)
+.+|.. +..+++|++|++++|.+..+++..+..+++|++|++++|.++++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence 443322 23344444444444444433333333333444444443333333
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.3e-16 Score=158.44 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=110.7
Q ss_pred CCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCC----CCCCChhhhhcCCCC
Q psy10956 307 CVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQ----IDKIPYGIFSRAKNL 382 (582)
Q Consensus 307 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~----i~~i~~~~~~~~~~L 382 (582)
+++|+++++.. .+..++..+|.+|++|+.+++.+|.+..+....|..+.++..+...... ...+....|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666666 6666666666666666666666666666666666666555555544421 123333344455555
Q ss_pred C-EEeccCCcC-Cc-ccccccCCCCCCEEECcCCCCCccchhh-hCCCCCCEEECcCCCCCcccc-ccCCCCCCCEEeCC
Q psy10956 383 S-KVNMKDNLL-TS-LPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPS-SIGNLRKLKCLDLE 457 (582)
Q Consensus 383 ~-~L~l~~n~l-~~-l~~~~~~~~~L~~L~l~~n~l~~~~~~l-~~~~~L~~L~ls~n~l~~i~~-~l~~~~~L~~L~L~ 457 (582)
+ .+.+..... .. +........+++.+.+.++-.......+ ..|++|+.+++++|.++.|+. +|.+|.+|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 5 333322110 00 1111112334555555444222111111 236666666666666666643 45666666666666
Q ss_pred CCCCCCCcc-cccCCCcCC-EEEccCCCCcccc-ccccCCCCCCEEECCCCCCCcCcc-cccCCCCCCEEe
Q psy10956 458 ENKLESLPN-EIGFLKELQ-RLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSIPE-EIGTLENLHTLY 524 (582)
Q Consensus 458 ~n~l~~l~~-~l~~~~~L~-~L~l~~n~l~~i~-~~l~~~~~L~~L~ls~n~l~~i~~-~~~~l~~L~~L~ 524 (582)
+| +..++. .+..+.+|+ .+++.+ .++.|+ .+|.+|++|+.+++++|.++.|+. .|.+|++|+.+.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 65 554433 345555565 666655 455443 455556666666665555555432 455555555554
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.9e-16 Score=139.63 Aligned_cols=131 Identities=26% Similarity=0.286 Sum_probs=76.2
Q ss_pred cCccEEEccCCCCC--CCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCC-cchhhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSIT--HLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS-LPDSLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~--~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~L 177 (582)
.++++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+.++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45666777666666 5666566666666666666666655 555666666666666666664 5555555666666666
Q ss_pred CCCCCCccc--hhhhccccccEeecccCcCcccCc----cccCCCCCCEEEccCCcCcccC
Q psy10956 178 RHNKLNELP--MVVYKLTSLKILYLRFNRIKTVHP----DIQYLSNLSMLSMRDNKIRELP 232 (582)
Q Consensus 178 ~~n~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~~n~l~~i~ 232 (582)
++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 666666544 344455555555555555554443 3444455555555554444443
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=9.5e-17 Score=159.43 Aligned_cols=280 Identities=13% Similarity=0.128 Sum_probs=143.6
Q ss_pred CCCcEEeCCCCCCC-CcchhhcC-CCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcC--------C
Q psy10956 262 TMLVTLDLQHNELV-NIPDMLGN-LINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSS--------L 331 (582)
Q Consensus 262 ~~L~~L~l~~n~l~-~i~~~~~~-~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--------~ 331 (582)
.++++|.++++--. .+ ..+.. +++|+.|+|++|++..+....+..+.++.+.+..+ .++..+|.+ +
T Consensus 25 ~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred CceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 45666666653111 11 22333 67788888888877621111112222333444443 456666777 8
Q ss_pred CCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcC----Ccc-cccccCCCCCC
Q psy10956 332 TSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLL----TSL-PLDLGTWVGLT 406 (582)
Q Consensus 332 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l----~~l-~~~~~~~~~L~ 406 (582)
++|+++.+.+ .++.+...+|..+++|+.+++.+|.+..++...|.++.++..+....... ..+ ...+..+..|+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 8888888888 78888888888888888888888888877777777766666665554211 111 12233344444
Q ss_pred -EEECcCCCCCccchhh----hCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcccccCCCcCCEEEccC
Q psy10956 407 -ELNLGTNQISKLSEDI----QNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQS 481 (582)
Q Consensus 407 -~L~l~~n~l~~~~~~l----~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~l~~ 481 (582)
.+.+.... .++..+ ....++..+.+.++-...-...+ ...+++|+++++++
T Consensus 180 ~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l----------------------~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 180 TTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLI----------------------RDYMPNLVSLDISK 235 (329)
T ss_dssp EEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHH----------------------HHHCTTCCEEECTT
T ss_pred eeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHHHHHHH----------------------HHhcCCCeEEECCC
Confidence 23332211 111111 11233333433332111000001 11244555555555
Q ss_pred CCCcccc-ccccCCCCCCEEECCCCCCCcCc-ccccCCCCCC-EEeCCCCCCCCCCCcccccCCCCCEEecCCCCCCCCc
Q psy10956 482 NQLVSLP-RAIGHLTNLSYLSVGENNLQSIP-EEIGTLENLH-TLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIP 558 (582)
Q Consensus 482 n~l~~i~-~~l~~~~~L~~L~ls~n~l~~i~-~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~i~ 558 (582)
|+++.|+ ..|.+|++|+.+++.+| +..|+ ..|.+|.+|+ .+.+.+ .+....+..|.+|++|+.|++++|.++.|+
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 5555444 24555555555555554 44442 2355555555 555554 322223344556666666666666666666
Q ss_pred HHhHcCChHHHHHH
Q psy10956 559 SEIVVGGPSLIIRY 572 (582)
Q Consensus 559 ~~~~~~~~~l~~~~ 572 (582)
...|.+|++|+.+|
T Consensus 314 ~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 314 DELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTCCCCEEE
T ss_pred hhhhcCCcchhhhc
Confidence 66666666555443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.4e-16 Score=138.47 Aligned_cols=135 Identities=26% Similarity=0.310 Sum_probs=112.0
Q ss_pred CCCCCcEEEccCCCCc--ccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCc-cchhhhccccccEe
Q psy10956 122 KLTHLEELYLYGNKLA--SLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNE-LPMVVYKLTSLKIL 198 (582)
Q Consensus 122 ~l~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-l~~~~~~~~~L~~L 198 (582)
..++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3478999999999998 8888888899999999999999877 778889999999999999986 77777678999999
Q ss_pred ecccCcCcccC--ccccCCCCCCEEEccCCcCcccCc----cccCCCCccEEeccCccCcccCcc
Q psy10956 199 YLRFNRIKTVH--PDIQYLSNLSMLSMRDNKIRELPP----ELGELKNLVTLDLAHNHLEELPKE 257 (582)
Q Consensus 199 ~l~~~~~~~~~--~~l~~l~~L~~L~l~~n~l~~i~~----~l~~l~~L~~L~l~~n~l~~l~~~ 257 (582)
++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.++|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999888765 567888888888888888887765 577788888888888877766653
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=6.9e-16 Score=155.22 Aligned_cols=173 Identities=21% Similarity=0.278 Sum_probs=98.5
Q ss_pred cEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCc-ccc-CCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCC
Q psy10956 265 VTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE-TLS-KCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRN 342 (582)
Q Consensus 265 ~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~-~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 342 (582)
+.++++++.++.+|..+. +.++.|++++|.++.++. .+. .+++|+.|++++|.+..++...+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 566777777776665433 346677777777666443 333 5666666666666666666555666666666666666
Q ss_pred cCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccc----cCCCCCCEEECcCCCCCcc
Q psy10956 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL----GTWVGLTELNLGTNQISKL 418 (582)
Q Consensus 343 ~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~----~~~~~L~~L~l~~n~l~~~ 418 (582)
.++.+....+..+++|+.|++++|.+..++...|..+++|+.|++++|.++.++... ..+++|+.|++++|.++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 666655555555666666666666665555555555555555555555555554332 3345555555555555544
Q ss_pred ch-hhhCCCC--CCEEECcCCCCC
Q psy10956 419 SE-DIQNLVN--LEVLVLSNNLLK 439 (582)
Q Consensus 419 ~~-~l~~~~~--L~~L~ls~n~l~ 439 (582)
+. .+..++. ++.|++++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 32 2333333 244555555443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=5e-17 Score=177.86 Aligned_cols=157 Identities=25% Similarity=0.281 Sum_probs=61.0
Q ss_pred cCccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCC
Q psy10956 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n 180 (582)
.+++.|+|.++.+..++..+. +.++|+.+.+. .+++..|.+...|..+..+++|++|+|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-----~~l~Ls~~~i~-------------~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n 234 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-----QHKKLSQYSID-------------EDDDIENRMVMPKDSKYDDQLWHALDLSNL 234 (727)
T ss_dssp -------------------------------------------------------------------CCCCCCEEECTTS
T ss_pred CccceEEeeCCCCCcchhhHh-----hcCccCccccc-------------CccccccceecChhhhccCCCCcEEECCCC
Confidence 346777777777766554332 23333333222 112222333333444555555555555555
Q ss_pred CCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccC
Q psy10956 181 KLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260 (582)
Q Consensus 181 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~ 260 (582)
.+..+|..++.+++|++|+|++|.++.+|..++.+++|++|+|++|.++.+|..++.+++|++|+|++|.++.+|..++.
T Consensus 235 ~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~ 314 (727)
T 4b8c_D 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGN 314 (727)
T ss_dssp CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTS
T ss_pred CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCcEEeCCCCCCC
Q psy10956 261 CTMLVTLDLQHNELV 275 (582)
Q Consensus 261 ~~~L~~L~l~~n~l~ 275 (582)
+++|++|+|++|.+.
T Consensus 315 l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLE 329 (727)
T ss_dssp CTTCCCEECTTSCCC
T ss_pred CCCccEEeCCCCccC
Confidence 555566666555555
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.1e-15 Score=132.85 Aligned_cols=123 Identities=24% Similarity=0.271 Sum_probs=83.4
Q ss_pred cCccEEEccCCCCC--CCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCC-cchhhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSIT--HLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS-LPDSLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~--~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~L 177 (582)
.+++.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 55777777777777 6776667777777777777777765 566777777777777777775 6666666777777777
Q ss_pred CCCCCCccc--hhhhccccccEeecccCcCcccCc----cccCCCCCCEEEcc
Q psy10956 178 RHNKLNELP--MVVYKLTSLKILYLRFNRIKTVHP----DIQYLSNLSMLSMR 224 (582)
Q Consensus 178 ~~n~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~ 224 (582)
++|.++.++ ..+..+++|++|++++|.++.+++ .+..+++|++|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777776544 455566666666666666665543 34555666655554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.6e-15 Score=130.49 Aligned_cols=125 Identities=26% Similarity=0.316 Sum_probs=102.6
Q ss_pred CCCCCcEEEccCCCCc--ccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCc-cchhhhccccccEe
Q psy10956 122 KLTHLEELYLYGNKLA--SLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNE-LPMVVYKLTSLKIL 198 (582)
Q Consensus 122 ~l~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-l~~~~~~~~~L~~L 198 (582)
..++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++++++|++|++++|.++. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3477899999999988 7888888899999999999998877 678889999999999999986 77777778889999
Q ss_pred ecccCcCcccC--ccccCCCCCCEEEccCCcCcccCc----cccCCCCccEEecc
Q psy10956 199 YLRFNRIKTVH--PDIQYLSNLSMLSMRDNKIRELPP----ELGELKNLVTLDLA 247 (582)
Q Consensus 199 ~l~~~~~~~~~--~~l~~l~~L~~L~l~~n~l~~i~~----~l~~l~~L~~L~l~ 247 (582)
++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99988888654 667788888888888888876655 46677777777765
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=1.3e-13 Score=140.34 Aligned_cols=325 Identities=10% Similarity=0.166 Sum_probs=155.9
Q ss_pred CCCCc-cccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeCCCCCCCccchhhh
Q psy10956 114 THLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLNELPMVVY 190 (582)
Q Consensus 114 ~~l~~-~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~~~~ 190 (582)
+.|.. +|.+|++|+.+.+.. .++.+. .+|.+|++|+.+++..+ ++.|+ .+|.++++|+.+.+..+ +..+....+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 34543 577777888887764 355553 45677777888777654 55443 35677777777666543 333333222
Q ss_pred -ccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccC-ccccCCCCccEEeccCccCcccC-ccccCCCCCcEE
Q psy10956 191 -KLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELP-PELGELKNLVTLDLAHNHLEELP-KEIGNCTMLVTL 267 (582)
Q Consensus 191 -~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L 267 (582)
++. +................+.+|++|+.+.+..+. ..++ ..+..+.+|+.+.+..+ ++.+. ..+..+..|+.+
T Consensus 137 ~~~~-~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 137 KGCD-FKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTCC-CSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred eccc-ccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 232 222222222111222346667777777776443 2332 23556666776666554 33332 245556666666
Q ss_pred eCCCCCCCCcchhhcCCCCCcEEEccCCcCCcC-CccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCcc
Q psy10956 268 DLQHNELVNIPDMLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTA 346 (582)
Q Consensus 268 ~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 346 (582)
.+..+.. .+.........|+.+.+.... +.+ ...+..+..++.+.+..+ ...+....+..+..++.+......
T Consensus 214 ~~~~~~~-~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~--- 287 (394)
T 4fs7_A 214 EFPNSLY-YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI--- 287 (394)
T ss_dssp CCCTTCC-EECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---
T ss_pred ecCCCce-EeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---
Confidence 5544322 222333344555555554331 211 123445555555555443 223333345555555555444332
Q ss_pred CCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcccccccCCCCCCEEECcCCCCCccchhhhCCC
Q psy10956 347 YPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLV 426 (582)
Q Consensus 347 ~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~ 426 (582)
+....+..+.+|+.+.+.++ +..|+...|.+|.+|+.+++..+ ++.+. ...|.+|.
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~----------------------~~aF~~c~ 343 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG----------------------KRSFRGCT 343 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC----------------------TTTTTTCT
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh----------------------HHhccCCC
Confidence 22233444445555554332 44444444545555555544322 33321 12344455
Q ss_pred CCCEEECcCCCCCccc-cccCCCCCCCEEeCCCCCCCCCcccccCCCcCCE
Q psy10956 427 NLEVLVLSNNLLKKLP-SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQR 476 (582)
Q Consensus 427 ~L~~L~ls~n~l~~i~-~~l~~~~~L~~L~L~~n~l~~l~~~l~~~~~L~~ 476 (582)
+|+.+++..+ ++.|. .+|.+|.+|+.+++..+ +..+...+..+++|+.
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred CCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcE
Confidence 5555555443 33332 34555555555555432 2223333444444443
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=3.9e-14 Score=143.66 Aligned_cols=254 Identities=11% Similarity=0.163 Sum_probs=121.7
Q ss_pred CCCcEEEccCCcCCcCC-ccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEc
Q psy10956 285 INLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINF 363 (582)
Q Consensus 285 ~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 363 (582)
..++.+.+..+ ++.++ ..|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.+ .+..+...+|..|++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44555555432 33322 234443 5666666544 555555555553 466666654 455555555666666666666
Q ss_pred CCCCCCCCChhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECcCCCCCccchh-hhCCCCCCEEECcCCCCCcc
Q psy10956 364 EHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQISKLSED-IQNLVNLEVLVLSNNLLKKL 441 (582)
Q Consensus 364 ~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~ls~n~l~~i 441 (582)
.+|.+..++...|. +.+|+.+.+..+ +..+ ...|..+++|+.+++..+ ++.+... |.+ .+|+.+.+. +.++.|
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 66666665555554 455666666533 4433 234455555665555543 3333222 222 455555552 234433
Q ss_pred -ccccCCCCCCCEEeCCCCCCC-----CCc-ccccCCCcCCEEEccCCCCcccc-ccccCCCCCCEEECCCCCCCcC-cc
Q psy10956 442 -PSSIGNLRKLKCLDLEENKLE-----SLP-NEIGFLKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSI-PE 512 (582)
Q Consensus 442 -~~~l~~~~~L~~L~L~~n~l~-----~l~-~~l~~~~~L~~L~l~~n~l~~i~-~~l~~~~~L~~L~ls~n~l~~i-~~ 512 (582)
..+|.+|++|+.+++.++.+. .++ ..+..|++|+.+.+.+ .+..|+ .+|.+|.+|+.+++..+ ++.| ..
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 234555555555555554433 122 2344455555555552 244443 34445555555555332 3333 22
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCcccccCC-CCCEEecCC
Q psy10956 513 EIGTLENLHTLYLNDNTCLNNIPFELALCS-NLQIMSLDN 551 (582)
Q Consensus 513 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~ls~ 551 (582)
.|.+| +|+.+.+.+|.........+.+++ +++.|++..
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 34444 555555555543332223333332 344444443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=3.2e-15 Score=133.87 Aligned_cols=132 Identities=18% Similarity=0.263 Sum_probs=78.0
Q ss_pred ccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccchhh-hccccccEe
Q psy10956 120 VEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVV-YKLTSLKIL 198 (582)
Q Consensus 120 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~-~~~~~L~~L 198 (582)
+.++++|++|++++|.++.++......++|++|++++|.++.+ ..+..+++|++|++++|.++.+|..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4455666666666666665543323333666666666666655 45666666666666666666555433 456666666
Q ss_pred ecccCcCcccCc--cccCCCCCCEEEccCCcCcccCcc----ccCCCCccEEeccCccCc
Q psy10956 199 YLRFNRIKTVHP--DIQYLSNLSMLSMRDNKIRELPPE----LGELKNLVTLDLAHNHLE 252 (582)
Q Consensus 199 ~l~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~i~~~----l~~l~~L~~L~l~~n~l~ 252 (582)
++++|.+..++. .+..+++|++|++++|.+..+|.. +..+++|++|++++|...
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666655544 455666666666666666655543 555666666666665544
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.9e-14 Score=130.81 Aligned_cols=125 Identities=25% Similarity=0.391 Sum_probs=57.4
Q ss_pred CEEECcCCCCCccchhhhCCCCCCEEECcCCCCCcccc--ccCCCCCCCEEeCCCCCCCCC-cccccCCCcCCEEEccCC
Q psy10956 406 TELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPS--SIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSN 482 (582)
Q Consensus 406 ~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~--~l~~~~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~l~~n 482 (582)
+.++++++.++.+|..+. .+|++|++++|.++.++. .+..+++|+.|++++|+++.+ |..++.+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 445555555554444332 245555555555544432 144445555555555554433 334444444555555555
Q ss_pred CCcccc-ccccCCCCCCEEECCCCCCCcC-cccccCCCCCCEEeCCCCCCCC
Q psy10956 483 QLVSLP-RAIGHLTNLSYLSVGENNLQSI-PEEIGTLENLHTLYLNDNTCLN 532 (582)
Q Consensus 483 ~l~~i~-~~l~~~~~L~~L~ls~n~l~~i-~~~~~~l~~L~~L~l~~n~~~~ 532 (582)
+++.++ ..+..+++|++|++++|+++.+ |..+..+++|++|++++|++.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 444332 2344444444444444444432 3334444444444444444443
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=3.1e-14 Score=129.36 Aligned_cols=125 Identities=27% Similarity=0.416 Sum_probs=91.5
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCcccChh--ccCCCCCCEEEccCCCCCCc-chhhhCCCCCCEEeCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ--IGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLDLRH 179 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~--~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~L~~ 179 (582)
-+.++++++.++.+|..+.. ++++|++++|.++.++.. ++.+++|++|++++|.++.+ |..|.++++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 36788888888888875543 788888888888866643 77888888888888888855 66778888888888888
Q ss_pred CCCCccchh-hhccccccEeecccCcCccc-CccccCCCCCCEEEccCCcCc
Q psy10956 180 NKLNELPMV-VYKLTSLKILYLRFNRIKTV-HPDIQYLSNLSMLSMRDNKIR 229 (582)
Q Consensus 180 n~l~~l~~~-~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~ 229 (582)
|+++.++.. +..+++|++|++++|+++.+ +..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 888755443 55677777777777777744 445666777777777777665
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=8.1e-15 Score=131.26 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=63.4
Q ss_pred CCCCCEEeCCCCCCCccchhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccc-cCCCCccEEecc
Q psy10956 169 LQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLA 247 (582)
Q Consensus 169 l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l-~~l~~L~~L~l~ 247 (582)
+++|++|++++|.++.++......++|++|++++|.++.+ +.+..+++|++|++++|.++.+|..+ ..+++|++|+++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 3344444444444443332211122444444444444433 34444555555555555555444332 455555555555
Q ss_pred CccCcccCc--cccCCCCCcEEeCCCCCCCCcchh----hcCCCCCcEEEccCCcCC
Q psy10956 248 HNHLEELPK--EIGNCTMLVTLDLQHNELVNIPDM----LGNLINLTRLRLSYNRLE 298 (582)
Q Consensus 248 ~n~l~~l~~--~l~~~~~L~~L~l~~n~l~~i~~~----~~~~~~L~~L~l~~n~l~ 298 (582)
+|.++.+|. .+..+++|++|++++|.+..+|.. +..+++|+.|++++|...
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 555555444 455555566666666655555443 555666666666665443
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=5.4e-13 Score=135.25 Aligned_cols=261 Identities=15% Similarity=0.238 Sum_probs=113.2
Q ss_pred CCCCEEEccCCCCCCcc-hhhhCCCCCCEEeCCCCCCCccchhhhccccccEeecccCcCcccC-ccccCCCCCCEEEcc
Q psy10956 147 TNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVH-PDIQYLSNLSMLSMR 224 (582)
Q Consensus 147 ~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~ 224 (582)
..++.+.+.+ .++.|+ .+|.++ +|+.+.+..+ ++.++...+.-.+|+.+.+.. .+..+. ..+.+|++|+.+++.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 4444444443 233332 234443 4666665544 444444333223455555554 333332 234555555555555
Q ss_pred CCcCcccCccccCCCCccEEeccCccCcccCc-cccCCCCCcEEeCCCCCCCCcch-hhcCCCCCcEEEccCCcCCcC-C
Q psy10956 225 DNKIRELPPELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESV-P 301 (582)
Q Consensus 225 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~~-~ 301 (582)
.|.++.++.....+..|+.+.+..+ ++.++. .+..|++|+.+++..+ ++.|+. .|.. .+|+.+.+. +.++.+ .
T Consensus 189 ~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~ 264 (401)
T 4fdw_A 189 KTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS 264 (401)
T ss_dssp TSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT
T ss_pred CCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEECh
Confidence 5555555444333455555555432 333322 3445555555555442 333322 2222 444544442 223322 1
Q ss_pred ccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCC
Q psy10956 302 ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKN 381 (582)
Q Consensus 302 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~ 381 (582)
..|..|++|+.+.+.++.+.. +....+....|..|++|+.+.+. +.+..++...|.+|.+
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRK 324 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCS
T ss_pred hHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCC
Confidence 234444444444444433320 00002333344444444444444 2344444444555555
Q ss_pred CCEEeccCCcCCcc-cccccCCCCCCEEECcCCCCCccch-hhhCC-CCCCEEECcCCC
Q psy10956 382 LSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQISKLSE-DIQNL-VNLEVLVLSNNL 437 (582)
Q Consensus 382 L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~~-~~L~~L~ls~n~ 437 (582)
|+.+.+..+ ++.+ ...|..+ +|+.+++.+|.+..++. .+.++ ..++.|.+..+.
T Consensus 325 L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 325 VTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 555555332 3333 2334444 55555555554443222 23333 245555555543
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=125.74 Aligned_cols=125 Identities=26% Similarity=0.439 Sum_probs=83.2
Q ss_pred CEEECcCCCCCccchhhhCCCCCCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCcc-cccCCCcCCEEEccCCCC
Q psy10956 406 TELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPN-EIGFLKELQRLILQSNQL 484 (582)
Q Consensus 406 ~~L~l~~n~l~~~~~~l~~~~~L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~l~~n~l 484 (582)
+.++++++.++.+|..+ .++|++|++++|.++.+|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 46677777777666543 256777777777777776667777777777777777775543 466677777777777777
Q ss_pred cccc-ccccCCCCCCEEECCCCCCCcCcc-cccCCCCCCEEeCCCCCCCC
Q psy10956 485 VSLP-RAIGHLTNLSYLSVGENNLQSIPE-EIGTLENLHTLYLNDNTCLN 532 (582)
Q Consensus 485 ~~i~-~~l~~~~~L~~L~ls~n~l~~i~~-~~~~l~~L~~L~l~~n~~~~ 532 (582)
+.++ ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|++.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 6554 356666777777777777766654 35666677777777776554
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=9e-13 Score=134.12 Aligned_cols=297 Identities=12% Similarity=0.141 Sum_probs=201.3
Q ss_pred cCccEEEccCCCCCCCCc-cccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L 177 (582)
.+|+.+.+.. .++.|.. +|.+|++|+.+++..+ ++.++ ..+..+++|+.+.+..+ +..+. .+|.++..++....
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 4699999974 4777865 6899999999999765 56553 45888999998887654 33332 35666543333322
Q ss_pred CCCCCCccc-hhhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCc-cccCCCCccEEeccCccCcccC
Q psy10956 178 RHNKLNELP-MVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPP-ELGELKNLVTLDLAHNHLEELP 255 (582)
Q Consensus 178 ~~n~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~l~ 255 (582)
.. ...+. ..+.++.+|+.+.+..+...-....+.++.+|+.+.+..+ ++.+.. .+.++..|+.+.+..+... +.
T Consensus 148 ~~--~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~ 223 (394)
T 4fs7_A 148 EG--VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LG 223 (394)
T ss_dssp TT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-EC
T ss_pred cc--ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-ee
Confidence 22 22222 3455788899888876543333345778888888888765 444433 4777888888877665433 22
Q ss_pred ccccCCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCC
Q psy10956 256 KEIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSI 334 (582)
Q Consensus 256 ~~l~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 334 (582)
.....+..|+.+.+... +..+ ...+..+..++.+.+..+...--...+..+..++.+...... ++..++..+.+|
T Consensus 224 ~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L 299 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSL 299 (394)
T ss_dssp TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTC
T ss_pred hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccc
Confidence 33445678888887643 3333 245677888888888776444334567788888888776543 455567888899
Q ss_pred CEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECc
Q psy10956 335 NNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLG 411 (582)
Q Consensus 335 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~ 411 (582)
+.+.+.++ ++.+...+|..+.+|+.+++.+ .+..|+...|.+|.+|+.+.+..+ ++.+ ...|..|.+|+.+++.
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 99988754 7777778888899999999864 477888888988998988888765 5544 3345555556665554
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=7.5e-16 Score=140.91 Aligned_cols=125 Identities=22% Similarity=0.304 Sum_probs=82.6
Q ss_pred ccEEEccCC--CCCCCCccccCCCCCcEEEccCCCCcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCC
Q psy10956 103 ILNLDLSKS--SITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180 (582)
Q Consensus 103 l~~L~ls~~--~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n 180 (582)
++...+++. .++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 334444433 33344446777777777777777777766 666777777777777777777766666677777777777
Q ss_pred CCCccchhhhccccccEeecccCcCcccCc--cccCCCCCCEEEccCCcCc
Q psy10956 181 KLNELPMVVYKLTSLKILYLRFNRIKTVHP--DIQYLSNLSMLSMRDNKIR 229 (582)
Q Consensus 181 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~ 229 (582)
.++.+| .+..+++|++|++++|.+..++. .+..+++|++|++++|.+.
T Consensus 104 ~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 104 QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 777665 45567777777777777665433 4566666666666666665
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=4.3e-13 Score=121.69 Aligned_cols=125 Identities=22% Similarity=0.362 Sum_probs=72.2
Q ss_pred cEEeccCccCcccCccccCCCCCcEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCC-ccccCCCCCCEEEecCCCC
Q psy10956 242 VTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCAL 320 (582)
Q Consensus 242 ~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~~~~ 320 (582)
+.++++++.++.+|..+. ++|++|++++|.++.+|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456666666666665443 4566666666666666666666666666666666666543 2455556666666666665
Q ss_pred CCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCC
Q psy10956 321 SSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQI 368 (582)
Q Consensus 321 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i 368 (582)
..+++..+..+++|++|++++|.++.+....+..+++|+.+++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 555555555555555555555555554444444444444444444444
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=4.1e-16 Score=142.71 Aligned_cols=115 Identities=27% Similarity=0.427 Sum_probs=83.9
Q ss_pred CcccChhccCCCCCCEEEccCCCCCCcchhhhCCCCCCEEeCCCCCCCccchhhhccccccEeecccCcCcccCccccCC
Q psy10956 136 LASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYL 215 (582)
Q Consensus 136 l~~l~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 215 (582)
+..+|..+..+++|++|++++|.++.+| .+.++++|++|++++|.++.+|..+..+++|++|++++|.++.++ .+..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 3445557777888888888888888777 777788888888888888877776666778888888888777665 56667
Q ss_pred CCCCEEEccCCcCcccCc--cccCCCCccEEeccCccCc
Q psy10956 216 SNLSMLSMRDNKIRELPP--ELGELKNLVTLDLAHNHLE 252 (582)
Q Consensus 216 ~~L~~L~l~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~ 252 (582)
++|++|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 777777777777765443 4666667777777776665
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=1.1e-12 Score=117.45 Aligned_cols=125 Identities=32% Similarity=0.410 Sum_probs=59.9
Q ss_pred CEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCCccc-ccCCCcCCEEEccCCCCccccc-cccCCCCCCEEECCCCC
Q psy10956 429 EVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNE-IGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENN 506 (582)
Q Consensus 429 ~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~i~~-~l~~~~~L~~L~ls~n~ 506 (582)
+.++++++.++.+|..+. ++|+.|++++|+++.++.. ++.+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 344444444444443222 3455555555554444332 3444555555555555544432 23455555555555555
Q ss_pred CCcCcc-cccCCCCCCEEeCCCCCCCCCCCcccccCCCCCEEecCCCCCC
Q psy10956 507 LQSIPE-EIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS 555 (582)
Q Consensus 507 l~~i~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 555 (582)
++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 554433 2345555555555555544322223345555555555555555
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=2.7e-11 Score=123.13 Aligned_cols=321 Identities=11% Similarity=0.174 Sum_probs=153.3
Q ss_pred cccCCC-CCcEEEccCCCCccc-ChhccCCCCCCEEEccCCC---CCCcc-hhhhCCCCCCEEeCCCCCCCccchh-hhc
Q psy10956 119 SVEKLT-HLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENS---LTSLP-DSLANLQQLRVLDLRHNKLNELPMV-VYK 191 (582)
Q Consensus 119 ~~~~l~-~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~---l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~~-~~~ 191 (582)
+|.+++ .|+.+.+..+ ++.+ ..+|.+|.+|+.+.+..+. ++.|. .+|..+.+|+.+.+..+ ++.++.. +..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 455664 4777777643 5544 3456777777777776653 44443 35667777776666543 4444332 345
Q ss_pred cccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCcccCccccCCCCCcEEeCCC
Q psy10956 192 LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQH 271 (582)
Q Consensus 192 ~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~ 271 (582)
+.+|+.+.+..+...-....+..+..|+.+.+..+ +..|.........|+.+.+..+-...-...+..|..+.......
T Consensus 136 c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 136 CEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred hcccccccccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccc
Confidence 66677776654332222334556666666666543 33333332233456666555433222223444555555555444
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCcCccCCCCC
Q psy10956 272 NELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGG 351 (582)
Q Consensus 272 n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 351 (582)
.....+...+..........+ ........+..+.+. +.+..+...+|..+..|+.+.+.++ +..+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~a 283 (394)
T 4gt6_A 215 ESYPAIDNVLYEKSANGDYAL---------IRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS-VVSIGTGA 283 (394)
T ss_dssp SSSCBSSSCEEEECTTSCEEE---------EECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT-CCEECTTT
T ss_pred cccccccceeecccccccccc---------cccccccccceEEcC-CcceEcccceeeecccccEEecccc-cceecCcc
Confidence 333322211110000000000 001112223333332 2233444555666777777766543 33345555
Q ss_pred CCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccCCcCCcc-cccccCCCCCCEEECcCCCCCccc-hhhhCCCCCC
Q psy10956 352 PTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL-PLDLGTWVGLTELNLGTNQISKLS-EDIQNLVNLE 429 (582)
Q Consensus 352 ~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~-~~l~~~~~L~ 429 (582)
+..+..|+.+.+. +.+..++...|.+|.+|+.+.+..+ ++.+ ...|..|.+|+.+.+..+ ++.+. ..|.+|.+|+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 6666666666664 3455666666666666666666543 3333 234455555555555433 33332 2345555555
Q ss_pred EEECcCCCCCccccccCCCCCCCEEeCCC
Q psy10956 430 VLVLSNNLLKKLPSSIGNLRKLKCLDLEE 458 (582)
Q Consensus 430 ~L~ls~n~l~~i~~~l~~~~~L~~L~L~~ 458 (582)
.+++.++... + ..+..+.+|+.+.+..
T Consensus 361 ~i~~~~~~~~-~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 361 NIEYSGSRSQ-W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp EEEESSCHHH-H-HTCBCCCCC-------
T ss_pred EEEECCceee-h-hhhhccCCCCEEEeCC
Confidence 5555544221 1 2334445555555443
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=3.1e-11 Score=122.70 Aligned_cols=280 Identities=12% Similarity=0.212 Sum_probs=158.3
Q ss_pred CccEEEccCCCCCCCCc-cccCCCCCcEEEccCCC---CcccC-hhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEE
Q psy10956 102 NILNLDLSKSSITHLPP-SVEKLTHLEELYLYGNK---LASLP-SQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVL 175 (582)
Q Consensus 102 ~l~~L~ls~~~~~~l~~-~~~~l~~L~~L~l~~~~---l~~l~-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L 175 (582)
.|+.+.+.. .++.|.. +|.+|++|+.+.+..+. ++.+. .+|..|.+|+.+.+..+ ++.++ ..|..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 488888865 3777754 68999999999998763 55553 45788999998888664 55454 467889999999
Q ss_pred eCCCCCCCccch-hhhccccccEeecccCcCcccCccccCCCCCCEEEccCCcCcccCccccCCCCccEEeccCccCccc
Q psy10956 176 DLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254 (582)
Q Consensus 176 ~L~~n~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~l 254 (582)
.+..+ +..+.. .+..+..|+.+.+..+ +..+.........|+.+.+..+...--...+..+..++...........+
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccc
Confidence 99754 444444 3457899999998765 44444443345679999887654443334577788888877766554433
Q ss_pred Ccccc--------------CCCCCcEEeCCCCCCCCc-chhhcCCCCCcEEEccCCcCCcCCccccCCCCCCEEEecCCC
Q psy10956 255 PKEIG--------------NCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCA 319 (582)
Q Consensus 255 ~~~l~--------------~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~~~ 319 (582)
...+. ....+..+.+.. .+..+ ...|..+..|+.+.+..+...--...+.++..|+.+.+. +.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~ 298 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SR 298 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TT
T ss_pred cceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccceecCcccccccccccccCC-Cc
Confidence 22211 111222222211 11111 123445555555555443222112234455555555553 23
Q ss_pred CCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccC
Q psy10956 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD 389 (582)
Q Consensus 320 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~ 389 (582)
+..++..+|.+|.+|+.+.+..+ ++.+...+|..|.+|+++.+.. .+..|....|.+|.+|+.+++.+
T Consensus 299 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 299 ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECC
Confidence 44444455555555555555432 4444444455555555555432 24444444454455554444444
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=4.7e-12 Score=113.27 Aligned_cols=80 Identities=28% Similarity=0.495 Sum_probs=35.4
Q ss_pred cEEeCCCCCCCCcchhhcCCCCCcEEEccCCcCCcCCc-cccCCCCCCEEEecCCCCCCCChhhhcCCCCCCEEEccCCc
Q psy10956 265 VTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNK 343 (582)
Q Consensus 265 ~~L~l~~n~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 343 (582)
+.++++++.++.+|..+. ++|+.|++++|.+++++. .+..+++|++|++++|.+..++...+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 445555555554443222 345555555555444332 23444444444444444444444333444444444444444
Q ss_pred Ccc
Q psy10956 344 FTA 346 (582)
Q Consensus 344 l~~ 346 (582)
+++
T Consensus 88 l~~ 90 (177)
T 2o6r_A 88 LQS 90 (177)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=7.3e-12 Score=111.45 Aligned_cols=102 Identities=28% Similarity=0.437 Sum_probs=67.2
Q ss_pred cEEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcchh-hhCCCCCCEEeCCCCC
Q psy10956 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPDS-LANLQQLRVLDLRHNK 181 (582)
Q Consensus 104 ~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~L~~n~ 181 (582)
+.++++++.++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|+++.+|.. |.++++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776553 6677777777777755 45566777777777777777766543 4666777777777776
Q ss_pred CCccchh-hhccccccEeecccCcCcc
Q psy10956 182 LNELPMV-VYKLTSLKILYLRFNRIKT 207 (582)
Q Consensus 182 l~~l~~~-~~~~~~L~~L~l~~~~~~~ 207 (582)
++.+|.. +..+++|++|++++|.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 6666553 4456666666666665553
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=1.2e-11 Score=109.55 Aligned_cols=102 Identities=34% Similarity=0.494 Sum_probs=65.3
Q ss_pred ccEEEccCCCCCCCCccccCCCCCcEEEccCCCCccc-ChhccCCCCCCEEEccCCCCCCcchh-hhCCCCCCEEeCCCC
Q psy10956 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLPDS-LANLQQLRVLDLRHN 180 (582)
Q Consensus 103 l~~L~ls~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~L~~n 180 (582)
.+.++++++.++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|+++.+|.. |.++++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777777776542 6677777777777755 44566677777777777777665543 466666777777666
Q ss_pred CCCccchh-hhccccccEeecccCcCc
Q psy10956 181 KLNELPMV-VYKLTSLKILYLRFNRIK 206 (582)
Q Consensus 181 ~l~~l~~~-~~~~~~L~~L~l~~~~~~ 206 (582)
+++.++.. +..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66655543 445556666666655544
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=2.5e-11 Score=107.95 Aligned_cols=102 Identities=30% Similarity=0.481 Sum_probs=62.4
Q ss_pred CEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCC-cccccCCCcCCEEEccCCCCccccc-cccCCCCCCEEECCCCC
Q psy10956 429 EVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENN 506 (582)
Q Consensus 429 ~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~i~~-~l~~~~~L~~L~ls~n~ 506 (582)
+.++++++.++.+|..+. ++|+.|++++|+++.+ |..++.+++|++|++++|+++.+|. .+..+++|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 566667766666665443 5666667766666655 3445666666666666666666554 34566666666666666
Q ss_pred CCcCccc-ccCCCCCCEEeCCCCCCCC
Q psy10956 507 LQSIPEE-IGTLENLHTLYLNDNTCLN 532 (582)
Q Consensus 507 l~~i~~~-~~~l~~L~~L~l~~n~~~~ 532 (582)
++.+|.. +..+++|+.|++++|++.+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 6655443 5556666666666665443
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=3.2e-11 Score=106.88 Aligned_cols=104 Identities=32% Similarity=0.450 Sum_probs=67.1
Q ss_pred CCEEECcCCCCCccccccCCCCCCCEEeCCCCCCCCC-cccccCCCcCCEEEccCCCCccccc-cccCCCCCCEEECCCC
Q psy10956 428 LEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGEN 505 (582)
Q Consensus 428 L~~L~ls~n~l~~i~~~l~~~~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~i~~-~l~~~~~L~~L~ls~n 505 (582)
.+++++++|.++.+|..+. ++|+.|++++|+++.+ |..+..+++|++|++++|+++.++. .+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4667777777777765553 6677777777777755 4446666777777777777666653 3456666777777777
Q ss_pred CCCcCcc-cccCCCCCCEEeCCCCCCCCC
Q psy10956 506 NLQSIPE-EIGTLENLHTLYLNDNTCLNN 533 (582)
Q Consensus 506 ~l~~i~~-~~~~l~~L~~L~l~~n~~~~~ 533 (582)
+++.++. .+..+++|++|++++|++.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 6666544 356666666666666665543
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.24 E-value=1.4e-09 Score=109.84 Aligned_cols=74 Identities=11% Similarity=0.191 Sum_probs=33.9
Q ss_pred cCccEEEccCCCCCCCCc-cccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCcch-hhhCCCCCCEEeC
Q psy10956 101 ENILNLDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLPD-SLANLQQLRVLDL 177 (582)
Q Consensus 101 ~~l~~L~ls~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L 177 (582)
.+++.+.+.. .++.|+. +|.+|.+|+.+.+..+ ++.+. .+|..+ +|+.+.+..+ +..++. +|..+ +|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence 3466666543 3445543 4566666666666433 44443 223333 4555544332 333322 23322 4555555
Q ss_pred CC
Q psy10956 178 RH 179 (582)
Q Consensus 178 ~~ 179 (582)
..
T Consensus 121 p~ 122 (379)
T 4h09_A 121 PG 122 (379)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.3e-12 Score=131.16 Aligned_cols=177 Identities=19% Similarity=0.161 Sum_probs=111.3
Q ss_pred CCCCCEEeccCCcCCcc-----ccccc-CCCCCCEEECcCCCCCc--cchhhhCCCCCCEEECcCCCCCcc-----cccc
Q psy10956 379 AKNLSKVNMKDNLLTSL-----PLDLG-TWVGLTELNLGTNQISK--LSEDIQNLVNLEVLVLSNNLLKKL-----PSSI 445 (582)
Q Consensus 379 ~~~L~~L~l~~n~l~~l-----~~~~~-~~~~L~~L~l~~n~l~~--~~~~l~~~~~L~~L~ls~n~l~~i-----~~~l 445 (582)
.+.|+.|++++|.++.. ...+. ..++|++|++++|.++. +......+++|++|++++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45677777777776641 22222 23578888888887763 222233456788888888887622 2223
Q ss_pred -CCCCCCCEEeCCCCCCCC-----CcccccCCCcCCEEEccCCCCc-----cccccccCCCCCCEEECCCCCCCc-----
Q psy10956 446 -GNLRKLKCLDLEENKLES-----LPNEIGFLKELQRLILQSNQLV-----SLPRAIGHLTNLSYLSVGENNLQS----- 509 (582)
Q Consensus 446 -~~~~~L~~L~L~~n~l~~-----l~~~l~~~~~L~~L~l~~n~l~-----~i~~~l~~~~~L~~L~ls~n~l~~----- 509 (582)
...++|+.|+|++|.++. ++..+..+++|++|+|++|.++ .++..+..+++|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346788888888888763 4445567788888888888876 334566777888888998888872
Q ss_pred CcccccCCCCCCEEeCCCCCCCCCCCcccccCCC-----CCEEe--cCCCCCC
Q psy10956 510 IPEEIGTLENLHTLYLNDNTCLNNIPFELALCSN-----LQIMS--LDNCPLS 555 (582)
Q Consensus 510 i~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-----L~~L~--ls~n~l~ 555 (582)
+...+..+++|++|+|++|++.+.....+..+.. |+.+. +..+.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3444556788899999988866543333332211 55555 4554443
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.21 E-value=3e-09 Score=107.46 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=46.1
Q ss_pred ccCCCCCcEEEccCCCCcccC-hhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeCCCCCCCccchhhhccccccE
Q psy10956 120 VEKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKI 197 (582)
Q Consensus 120 ~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~ 197 (582)
+....+|+.+.+.. .++.++ .+|.+|.+|+.+++..+ ++.|+ .+|.++ +|+.+.+..+ ++.+....+...+|+.
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence 44456677777754 355553 34677777777777643 55554 345555 5666666433 4555544444446666
Q ss_pred eecccC
Q psy10956 198 LYLRFN 203 (582)
Q Consensus 198 L~l~~~ 203 (582)
+.+..+
T Consensus 118 i~lp~~ 123 (379)
T 4h09_A 118 FEFPGA 123 (379)
T ss_dssp EECCTT
T ss_pred ccCCCc
Confidence 666543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=6.6e-12 Score=125.99 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=65.5
Q ss_pred CCCCEEeCCCCCCCc--cchhhhccccccEeecccCcCcccC-----ccc-cCCCCCCEEEccCCcCcc-----cCcccc
Q psy10956 170 QQLRVLDLRHNKLNE--LPMVVYKLTSLKILYLRFNRIKTVH-----PDI-QYLSNLSMLSMRDNKIRE-----LPPELG 236 (582)
Q Consensus 170 ~~L~~L~L~~n~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~-----~~l-~~l~~L~~L~l~~n~l~~-----i~~~l~ 236 (582)
++|++|+|++|.++. +......+++|++|++++|.++... ..+ ...++|++|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 456666666665541 2222223445556666655554211 111 234556666666665542 222334
Q ss_pred CCCCccEEeccCccCcc-----cCccccCCCCCcEEeCCCCCCCC-----cchhhcCCCCCcEEEccCCcCC
Q psy10956 237 ELKNLVTLDLAHNHLEE-----LPKEIGNCTMLVTLDLQHNELVN-----IPDMLGNLINLTRLRLSYNRLE 298 (582)
Q Consensus 237 ~l~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~l~~n~l~ 298 (582)
.+++|++|+|++|.++. ++..+..+++|++|++++|.++. ++..+...++|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 55566666666665552 23344455566666666666652 2334445566666666666655
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=5.9e-10 Score=111.23 Aligned_cols=101 Identities=23% Similarity=0.292 Sum_probs=73.8
Q ss_pred EEEccCC-CCCCCCccccCCCCCcEEEccC-CCCcccC-hhccCCCCCCEEEccCCCCCCcc-hhhhCCCCCCEEeCCCC
Q psy10956 105 NLDLSKS-SITHLPPSVEKLTHLEELYLYG-NKLASLP-SQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHN 180 (582)
Q Consensus 105 ~L~ls~~-~~~~l~~~~~~l~~L~~L~l~~-~~l~~l~-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~L~~n 180 (582)
.++++++ .++.+|. +..+++|++|+|++ |.+..++ ..|..+++|++|+|++|+++.++ ..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677777 7888887 88888888888885 8888665 45777888888888888887554 46777888888888888
Q ss_pred CCCccchhhhccccccEeecccCcCc
Q psy10956 181 KLNELPMVVYKLTSLKILYLRFNRIK 206 (582)
Q Consensus 181 ~l~~l~~~~~~~~~L~~L~l~~~~~~ 206 (582)
+++.+|...+....|+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88777665544334666766666654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=1.9e-09 Score=107.53 Aligned_cols=102 Identities=24% Similarity=0.209 Sum_probs=76.4
Q ss_pred cEEEccCC-CCcccChhccCCCCCCEEEccC-CCCCCcc-hhhhCCCCCCEEeCCCCCCCccch-hhhccccccEeeccc
Q psy10956 127 EELYLYGN-KLASLPSQIGYVTNLTCLGLAE-NSLTSLP-DSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRF 202 (582)
Q Consensus 127 ~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~-n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~l~~ 202 (582)
..++++++ .++.+|. +..+++|++|+|++ |.++.+| ..|.++++|++|+|++|+++.++. .+.++++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 34577777 7888888 88888888888885 8888766 567888888888888888886554 456788888888888
Q ss_pred CcCcccCccccCCCCCCEEEccCCcCc
Q psy10956 203 NRIKTVHPDIQYLSNLSMLSMRDNKIR 229 (582)
Q Consensus 203 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 229 (582)
|+++.+|+.+.....|+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 888877665443334777787777776
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=4.9e-09 Score=104.15 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=35.6
Q ss_pred CCCCccEEeccCccCcc-cCccc---cCCCCCcEEeCCCCCCCC-----cchhhcCCCCCcEEEccCCcCCc
Q psy10956 237 ELKNLVTLDLAHNHLEE-LPKEI---GNCTMLVTLDLQHNELVN-----IPDMLGNLINLTRLRLSYNRLES 299 (582)
Q Consensus 237 ~l~~L~~L~l~~n~l~~-l~~~l---~~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~l~~n~l~~ 299 (582)
.+++|++|++.+|.+.. .+..+ ..+++|++|+++.|.+.. ++..+..+++|+.|++++|.+++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 35566666666665541 11111 245667777777776652 23333456777777777776653
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.3e-08 Score=101.19 Aligned_cols=62 Identities=24% Similarity=0.236 Sum_probs=32.5
Q ss_pred CCCCCcEEeCCCCCCCC-cchhh---cCCCCCcEEEccCCcCCc-----CCccccCCCCCCEEEecCCCCC
Q psy10956 260 NCTMLVTLDLQHNELVN-IPDML---GNLINLTRLRLSYNRLES-----VPETLSKCVHLNEFNVEGCALS 321 (582)
Q Consensus 260 ~~~~L~~L~l~~n~l~~-i~~~~---~~~~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~~~~~ 321 (582)
.+++|++|++.+|.+.. .+..+ ..+++|++|+++.|.+++ ++..+..+++|+.|++++|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 35566666666665541 11112 235566666666666553 2223344566666666666554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=9e-09 Score=92.28 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=30.6
Q ss_pred cCCCCCCEEECCCCCCC-----cCcccccCCCCCCEEeC--CCCCCCCC----CCcccccCCCCCEEecCCCCCC
Q psy10956 492 GHLTNLSYLSVGENNLQ-----SIPEEIGTLENLHTLYL--NDNTCLNN----IPFELALCSNLQIMSLDNCPLS 555 (582)
Q Consensus 492 ~~~~~L~~L~ls~n~l~-----~i~~~~~~l~~L~~L~l--~~n~~~~~----~~~~l~~l~~L~~L~ls~n~l~ 555 (582)
...+.|++|+|++|.++ .+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33444555555555444 12333444455555555 44544332 1223444566666666666554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=2e-08 Score=89.93 Aligned_cols=13 Identities=8% Similarity=-0.131 Sum_probs=5.6
Q ss_pred CCCCCEEeCCCCC
Q psy10956 517 LENLHTLYLNDNT 529 (582)
Q Consensus 517 l~~L~~L~l~~n~ 529 (582)
.++|++|++++|.
T Consensus 150 n~~L~~L~L~~n~ 162 (185)
T 1io0_A 150 NTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCCSS
T ss_pred CCCcCEEeccCCC
Confidence 3444444444443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=2.1e-07 Score=87.62 Aligned_cols=62 Identities=26% Similarity=0.356 Sum_probs=31.6
Q ss_pred cCCCCCCEEEccCCCCCCc---chhhhCCCCCCEEeCCCCCCCccchhhhccc--cccEeecccCcCc
Q psy10956 144 GYVTNLTCLGLAENSLTSL---PDSLANLQQLRVLDLRHNKLNELPMVVYKLT--SLKILYLRFNRIK 206 (582)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~l---p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~~--~L~~L~l~~~~~~ 206 (582)
..+++|++|+|++|.++.+ |..+..+++|+.|+|++|+++.+.. +..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCc
Confidence 3455666666666666543 2444556666666666666654421 22222 4444444444443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.03 E-value=5.6e-06 Score=77.82 Aligned_cols=78 Identities=29% Similarity=0.319 Sum_probs=62.9
Q ss_pred cCCCCCcEEEccCCCCccc---ChhccCCCCCCEEEccCCCCCCcchhhhCCC--CCCEEeCCCCCCC-ccc-------h
Q psy10956 121 EKLTHLEELYLYGNKLASL---PSQIGYVTNLTCLGLAENSLTSLPDSLANLQ--QLRVLDLRHNKLN-ELP-------M 187 (582)
Q Consensus 121 ~~l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~--~L~~L~L~~n~l~-~l~-------~ 187 (582)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.++.+ ..+..+. +|++|+|++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5689999999999999854 45677899999999999999977 3344444 9999999999987 454 2
Q ss_pred hhhccccccEee
Q psy10956 188 VVYKLTSLKILY 199 (582)
Q Consensus 188 ~~~~~~~L~~L~ 199 (582)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355688888886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=3.3e-06 Score=73.57 Aligned_cols=81 Identities=11% Similarity=0.175 Sum_probs=44.6
Q ss_pred CcCCEEEccCCCCccc-cccccCCCCCCEEECCCCC-CC--cCcccccC----CCCCCEEeCCCCC-CCCCCCcccccCC
Q psy10956 472 KELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENN-LQ--SIPEEIGT----LENLHTLYLNDNT-CLNNIPFELALCS 542 (582)
Q Consensus 472 ~~L~~L~l~~n~l~~i-~~~l~~~~~L~~L~ls~n~-l~--~i~~~~~~----l~~L~~L~l~~n~-~~~~~~~~l~~l~ 542 (582)
..|++|++++|.++.. -..+..|++|+.|+|++|. ++ ++ ..+.. +++|++|+|++|. +++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3466666666655411 1334566666666666663 44 22 22222 3457777777775 3333333455677
Q ss_pred CCCEEecCCCC
Q psy10956 543 NLQIMSLDNCP 553 (582)
Q Consensus 543 ~L~~L~ls~n~ 553 (582)
+|+.|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777775
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=1.8e-05 Score=68.94 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=41.1
Q ss_pred CccEEEccCCCCCCC-CccccCCCCCcEEEccCCC-Cc-ccChhccCC----CCCCEEEccCCC-CC--CcchhhhCCCC
Q psy10956 102 NILNLDLSKSSITHL-PPSVEKLTHLEELYLYGNK-LA-SLPSQIGYV----TNLTCLGLAENS-LT--SLPDSLANLQQ 171 (582)
Q Consensus 102 ~l~~L~ls~~~~~~l-~~~~~~l~~L~~L~l~~~~-l~-~l~~~~~~l----~~L~~L~l~~n~-l~--~lp~~l~~l~~ 171 (582)
+|++||++++.++.. -..+..+++|++|+|++|. ++ .--..+..+ ++|++|++++|. ++ .+ ..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 466666666666521 1234566666666666663 44 212223332 356666666653 44 23 33455666
Q ss_pred CCEEeCCCC
Q psy10956 172 LRVLDLRHN 180 (582)
Q Consensus 172 L~~L~L~~n 180 (582)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666666665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=2e-05 Score=69.97 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=28.8
Q ss_pred cccCCCCCCEEECCCCCCC-----cCcccccCCCCCCEEeCCCCCC--CC-----CCCcccccCCCCCEEecCCCC
Q psy10956 490 AIGHLTNLSYLSVGENNLQ-----SIPEEIGTLENLHTLYLNDNTC--LN-----NIPFELALCSNLQIMSLDNCP 553 (582)
Q Consensus 490 ~l~~~~~L~~L~ls~n~l~-----~i~~~~~~l~~L~~L~l~~n~~--~~-----~~~~~l~~l~~L~~L~ls~n~ 553 (582)
.+..-+.|+.|+|++|.|+ .+.+.+..-+.|++|+|++|.. .+ .+...+...+.|+.|+++.|.
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3334444555555555444 2223344444555555554321 11 122234455566666665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=3.9e-05 Score=68.08 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=3.5
Q ss_pred CCCCEEeCC
Q psy10956 518 ENLHTLYLN 526 (582)
Q Consensus 518 ~~L~~L~l~ 526 (582)
++|++|+++
T Consensus 157 ~tL~~L~l~ 165 (197)
T 1pgv_A 157 ESLLRVGIS 165 (197)
T ss_dssp SSCCEEECC
T ss_pred CCcCeEecc
Confidence 333444433
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.36 E-value=0.0069 Score=49.93 Aligned_cols=34 Identities=41% Similarity=0.427 Sum_probs=16.3
Q ss_pred CCEEEccCCCCCCcch-hhhCCCCCCEEeCCCCCC
Q psy10956 149 LTCLGLAENSLTSLPD-SLANLQQLRVLDLRHNKL 182 (582)
Q Consensus 149 L~~L~l~~n~l~~lp~-~l~~l~~L~~L~L~~n~l 182 (582)
|++|+|++|+++.+|. .|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4444444444444432 244455555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.22 E-value=0.011 Score=48.81 Aligned_cols=56 Identities=27% Similarity=0.285 Sum_probs=44.2
Q ss_pred CEEEccCCCCc--cccccccCCCCCCEEECCCCCCCcCcc-cccCCCCCCEEeCCCCCCCC
Q psy10956 475 QRLILQSNQLV--SLPRAIGHLTNLSYLSVGENNLQSIPE-EIGTLENLHTLYLNDNTCLN 532 (582)
Q Consensus 475 ~~L~l~~n~l~--~i~~~l~~~~~L~~L~ls~n~l~~i~~-~~~~l~~L~~L~l~~n~~~~ 532 (582)
..++.+++.++ .+|..+. ++|+.|+|++|+|+.++. .|..+++|+.|+|.+|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888887 8886542 468999999999988865 46778889999999998765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.47 E-value=5 Score=30.71 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=21.6
Q ss_pred CCCCCChhhhcCCCCCCEEEccCCcCccCCCCCCCCCCcccEEEcC
Q psy10956 319 ALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFE 364 (582)
Q Consensus 319 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 364 (582)
.++.+...+|.+|.+|+.+.+.. .++.+...+|..|.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 34455555555555555555543 2333444444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.80 E-value=6.1 Score=30.22 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=26.4
Q ss_pred cCccCCCCCCCCCCcccEEEcCCCCCCCCChhhhhcCCCCCEEeccC
Q psy10956 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD 389 (582)
Q Consensus 343 ~l~~~~~~~~~~~~~L~~L~l~~~~i~~i~~~~~~~~~~L~~L~l~~ 389 (582)
.++.+....|..|..|+++.+-. .++.|....|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 34455555666666666666654 34555555566666666666554
Done!