RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10956
(582 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 109 bits (275), Expect = 5e-25
Identities = 140/496 (28%), Positives = 240/496 (48%), Gaps = 64/496 (12%)
Query: 103 ILNLDLSKSSIT-HLPPSVEKLTHLEELYLYGNKLA-SLPSQIGYVT-NLTCLGLAENSL 159
++++DLS +I+ + ++ +L +++ + L N+L+ +P I + +L L L+ N+
Sbjct: 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130
Query: 160 TSLPDSLANLQQLRVLDLRHNKLN-ELPMVVYKLTSLKILYLRFN-RIKTVHPDIQYLSN 217
T ++ L LDL +N L+ E+P + +SLK+L L N + + + L++
Sbjct: 131 TG-SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189
Query: 218 LSMLSMRDNK-IRELPPELGELKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLDLQHNELV 275
L L++ N+ + ++P ELG++K+L + L +N+L E+P EIG T L LDL +N L
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249
Query: 276 N-IPDMLGNLINLTRLRLSYNRLE-SVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333
IP LGNL NL L L N+L +P ++ L ++ +LS L+ L +
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
+ + L N FT KIP + S + L + + N +
Sbjct: 310 LEILHLFSNNFTG-----------------------KIPVALTSLPR-LQVLQLWSNKFS 345
Query: 394 -SLPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEVLVL-SNNLLKKLPSSIGNLRK 450
+P +LG LT L+L TN ++ ++ E + + NL L+L SN+L ++P S+G R
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405
Query: 451 LKCLDLEENKLE-SLPNEIGFLKELQRLILQSN----------------QLVSLPRA--I 491
L+ + L++N LP+E L + L + +N Q++SL R
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465
Query: 492 GHL------TNLSYLSVGENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNL 544
G L L L + N ++P ++G+L L L L++N IP EL+ C L
Sbjct: 466 GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525
Query: 545 QIMSLDNCPLS-QIPS 559
+ L + LS QIP+
Sbjct: 526 VSLDLSHNQLSGQIPA 541
Score = 108 bits (272), Expect = 1e-24
Identities = 119/423 (28%), Positives = 194/423 (45%), Gaps = 43/423 (10%)
Query: 106 LDLSKSSIT-HLPPSVEKLTHLEELYLYGNKL-------------------------ASL 139
LDL + + +P S+ LT LE L L N+L +
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228
Query: 140 PSQIGYVTNLTCLGLAENSLT-SLPDSLANLQQLRVLDLRHNKLN-ELPMVVYKLTSLKI 197
P +IG +T+L L L N+LT +P SL NL+ L+ L L NKL+ +P ++ L L
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288
Query: 198 LYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-EL 254
L L N + P+ + L NL +L + N ++P L L L L L N E+
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
Query: 255 PKEIGNCTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLES-VPETLSKCVHLNE 312
PK +G L LDL N L IP+ L + NL +L L N LE +P++L C L
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408
Query: 313 FNVEGCALS-SLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQI-DK 370
++ + S LP + L + + +S N + S+ ++ N+
Sbjct: 409 VRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467
Query: 371 IPYGIFSRAKNLSKVNMKDNLLT-SLPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNL 428
+P +K L +++ N + ++P LG+ L +L L N++S ++ +++ + L
Sbjct: 468 LPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525
Query: 429 EVLVLS-NNLLKKLPSSIGNLRKLKCLDLEENKLE-SLPNEIGFLKELQRLILQSNQLV- 485
L LS N L ++P+S + L LDL +N+L +P +G ++ L ++ + N L
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585
Query: 486 SLP 488
SLP
Sbjct: 586 SLP 588
Score = 88.4 bits (219), Expect = 4e-18
Identities = 80/247 (32%), Positives = 130/247 (52%), Gaps = 9/247 (3%)
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID-KIPYGIFSRAKNLSKVNMKDNLL 392
+ +I LS + S + + +IN +NQ+ IP IF+ + +L +N+ +N
Sbjct: 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130
Query: 393 TSLPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEVLVLSNN-LLKKLPSSIGNLRK 450
T + G+ L L+L N +S ++ DI + +L+VL L N L+ K+P+S+ NL
Sbjct: 131 TG-SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189
Query: 451 LKCLDLEENKLE-SLPNEIGFLKELQRLILQSNQLV-SLPRAIGHLTNLSYLSVGENNLQ 508
L+ L L N+L +P E+G +K L+ + L N L +P IG LT+L++L + NNL
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249
Query: 509 -SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS-QIPSEIVVGGP 566
IP +G L+NL L+L N IP + L + L + LS +IP E+V+
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQ 308
Query: 567 SLIIRYL 573
+L I +L
Sbjct: 309 NLEILHL 315
Score = 79.9 bits (197), Expect = 1e-15
Identities = 91/351 (25%), Positives = 151/351 (43%), Gaps = 61/351 (17%)
Query: 105 NLDLSKSSIT-HLPPSVEKLTHLEELYLYGNKLA-SLPSQIGYVTNLTCLGLAENSLT-- 160
+LDL +++T +P S+ L +L+ L+LY NKL+ +P I + L L L++NSL+
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299
Query: 161 -----------------------SLPDSLANLQQLRVLDLRHNKLN-ELPMVVYKLTSLK 196
+P +L +L +L+VL L NK + E+P + K +L
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359
Query: 197 ILYLRFNRIKTVHPDIQYLS-NLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-E 253
+L L N + P+ S NL L + N + E+P LG ++L + L N E
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419
Query: 254 LPKEIGNCTMLVTLDLQHNELV-------------------------NIPDMLGNLINLT 288
LP E ++ LD+ +N L +PD G+ L
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLE 478
Query: 289 RLRLSYNRL-ESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAY 347
L LS N+ +VP L L + + LS LSS + ++ LS N+ +
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538
Query: 348 PSGGPTQFTSVYSINFEHNQID-KIPYGIFSRAKNLSKVNMKDNLL-TSLP 396
++ + ++ NQ+ +IP + ++L +VN+ N L SLP
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNL-GNVESLVQVNISHNHLHGSLP 588
Score = 75.7 bits (186), Expect = 4e-14
Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 32/237 (13%)
Query: 99 KEENILNLDLSKSSIT-HLPPSVEKLTHLEELYLYGNKLAS-LPSQIGYVTNLTCLGLAE 156
K N+ LDLS +++T +P + +L +L L+ N L +P +G +L + L +
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413
Query: 157 NSLT-SLPDSLANLQQLRVLDLRHNKLN-ELPMVVYKLTSLKILYLRFNRIKTVHPDIQY 214
NS + LP L + LD+ +N L + + + SL++L L N+ PD
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473
Query: 215 LSNLSMLSMRDNKIR-------------------------ELPPELGELKNLVTLDLAHN 249
L L + N+ E+P EL K LV+LDL+HN
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533
Query: 250 HLE-ELPKEIGNCTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLE-SVPET 303
L ++P +L LDL N+L IP LGN+ +L ++ +S+N L S+P T
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 90.0 bits (223), Expect = 2e-19
Identities = 88/274 (32%), Positives = 139/274 (50%), Gaps = 4/274 (1%)
Query: 66 TVKHPESNKPKPTTKKKEPIQADLNIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTH 125
+ ++ + L+ + L L+L+L+ + + +LT+
Sbjct: 60 LLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLN--RLRSNISELLELTN 117
Query: 126 LEELYLYGNKLASLPSQIGYVT-NLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNE 184
L L L N + +P IG + NL L L++N + SLP L NL L+ LDL N L++
Sbjct: 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD 177
Query: 185 LPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTL 244
LP ++ L++L L L N+I + P+I+ LS L L + +N I EL L LKNL L
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGL 237
Query: 245 DLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETL 304
+L++N LE+LP+ IGN + L TLDL +N++ +I LG+L NL L LS N L + +
Sbjct: 238 ELSNNKLEDLPESIGNLSNLETLDLSNNQISSI-SSLGSLTNLRELDLSGNSLSNALPLI 296
Query: 305 SKCVHLNEFNVEGCALSSLPDGLLSSLTSINNIT 338
+ + L E + + L+S+ NNI
Sbjct: 297 ALLLLLLELLLNLLLTLKALELKLNSILLNNNIL 330
Score = 75.4 bits (185), Expect = 1e-14
Identities = 69/190 (36%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 380 KNLSKVNMKDNLLTSLPLDLG-TWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLL 438
NL+ +++ +N +T +P +G L EL+L N+I L ++NL NL+ L LS N L
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175
Query: 439 KKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLS 498
LP + NL L LDL NK+ LP EI L L+ L L +N ++ L ++ +L NLS
Sbjct: 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS 235
Query: 499 YLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIP 558
L + N L+ +PE IG L NL TL L++N +++I L +NL+ + L LS
Sbjct: 236 GLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSIS-SLGSLTNLRELDLSGNSLSNAL 293
Query: 559 SEIVVGGPSL 568
I + L
Sbjct: 294 PLIALLLLLL 303
Score = 73.1 bits (179), Expect = 9e-14
Identities = 84/266 (31%), Positives = 134/266 (50%), Gaps = 3/266 (1%)
Query: 283 NLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRN 342
+N L LS N L +P +LS+ + L+ + G + L +L + ++ L+ N
Sbjct: 45 VAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGS-ENLLNLLPLPSLDLNLN 103
Query: 343 KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTW 402
+ + S + T++ S++ ++N I IP I NL ++++ DN + SLP L
Sbjct: 104 RLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNL 162
Query: 403 VGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLE 462
L L+L N +S L + + NL NL L LS N + LP I L L+ LDL N +
Sbjct: 163 PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII 222
Query: 463 SLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHT 522
L + + LK L L L +N+L LP +IG+L+NL L + NN S +G+L NL
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL-SNNQISSISSLGSLTNLRE 281
Query: 523 LYLNDNTCLNNIPFELALCSNLQIMS 548
L L+ N+ N +P L L+++
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLL 307
Score = 71.5 bits (175), Expect = 2e-13
Identities = 103/357 (28%), Positives = 156/357 (43%), Gaps = 52/357 (14%)
Query: 173 RVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELP 232
L+L N L LP + +L SL +L ++ L L L + N++R
Sbjct: 50 LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109
Query: 233 PELGELKNLVTLDLAHNHLEELPKEIGNCTM-LVTLDLQHNELVNIPDMLGNLINLTRLR 291
EL EL NL +LDL +N++ ++P IG L LDL N++ ++P L NL NL L
Sbjct: 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLD 169
Query: 292 LSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGG 351
LS+N L +P+ LLS+L+++NN+ LS NK + P
Sbjct: 170 LSFNDLSDLPK------------------------LLSNLSNLNNLDLSGNKISDLPP-- 203
Query: 352 PTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLG 411
L ++++ +N + L L L+ L L
Sbjct: 204 -----------------------EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS 240
Query: 412 TNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFL 471
N++ L E I NL NLE L LSNN + + SS+G+L L+ LDL N L + I L
Sbjct: 241 NNKLEDLPESIGNLSNLETLDLSNNQISSI-SSLGSLTNLRELDLSGNSLSNALPLI-AL 298
Query: 472 KELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDN 528
L +L + L + + L ++ N S PE + LE+L+ L+ DN
Sbjct: 299 LLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDN 355
Score = 70.8 bits (173), Expect = 5e-13
Identities = 96/337 (28%), Positives = 141/337 (41%), Gaps = 51/337 (15%)
Query: 225 DNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNL 284
N + LP L L +L L + + + + N L +LDL N L + L L
Sbjct: 56 SNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLEL 115
Query: 285 INLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKF 344
NLT L L N + +P L L N
Sbjct: 116 TNLTSLDLDNNNITDIPP-------------------------LIGLLKSN--------- 141
Query: 345 TAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVG 404
+ ++ N+I+ +P + + NL +++ N L+ LP L
Sbjct: 142 -------------LKELDLSDNKIESLPSPLRN-LPNLKNLDLSFNDLSDLPKLLSNLSN 187
Query: 405 LTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESL 464
L L+L N+IS L +I+ L LE L LSNN + +L SS+ NL+ L L+L NKLE L
Sbjct: 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL 247
Query: 465 PNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLY 524
P IG L L+ L L +NQ+ S+ ++G LTNL L + N+L + I L L L
Sbjct: 248 PESIGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLL--LE 304
Query: 525 LNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEI 561
L N L EL L S L ++ + + P +
Sbjct: 305 LLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 74.9 bits (184), Expect = 6e-14
Identities = 113/386 (29%), Positives = 181/386 (46%), Gaps = 44/386 (11%)
Query: 89 LNIEKEFLRC-----KEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNK-LASLPSQ 142
L +K LRC + EN++ L + S + L V LT L + L G+K L +P
Sbjct: 594 LRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD- 652
Query: 143 IGYVTNLTCLGLAE-NSLTSLPDSLANLQQLRVLDL-RHNKLNELPMVVYKLTSLKILYL 200
+ TNL L L++ +SL LP S+ L +L LD+ R L LP + L SL L L
Sbjct: 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711
Query: 201 R-FNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIG 259
+R+K+ PDI +N+S L + + I E P L L+NL L L E+L + +
Sbjct: 712 SGCSRLKSF-PDIS--TNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQ 767
Query: 260 NCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYN-RLESVPETLSKCVHLNEFNVEGC 318
T L+T+ L +LTRL LS L +P ++ L +E C
Sbjct: 768 PLTPLMTM-LSP--------------SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812
Query: 319 A-LSSLPDGL-LSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIF 376
L +LP G+ L SL S++ SR + P T++ +N I+++P+ I
Sbjct: 813 INLETLPTGINLESLESLDLSGCSRLRTF------PDISTNISDLNLSRTGIEEVPWWI- 865
Query: 377 SRAKNLSKVNM-KDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSN 435
+ NLS ++M N L + L++ L ++ + L+E N EV + ++
Sbjct: 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF--SDCGALTEASWNGSPSEVAMATD 923
Query: 436 NLLKKLPSSIGNLRKLKCLDLEENKL 461
N+ KLPS++ + + C +L++ L
Sbjct: 924 NIHSKLPSTV-CINFINCFNLDQEAL 948
Score = 65.7 bits (160), Expect = 4e-11
Identities = 100/368 (27%), Positives = 158/368 (42%), Gaps = 73/368 (19%)
Query: 216 SNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNE-L 274
L +L +R +P +NLV L + + LE+L + + T L +DL+ ++ L
Sbjct: 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL 647
Query: 275 VNIPDMLGNLINLTRLRLS-YNRLESVPETLSKCVHLNEFNVEGCA-LSSLPDGL-LSSL 331
IPD L NL L+LS + L +P ++ L + ++ C L LP G+ L SL
Sbjct: 648 KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706
Query: 332 TSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNL 391
+N SR K P T++ ++ + I++ P
Sbjct: 707 YRLNLSGCSRLKSF------PDISTNISWLDLDETAIEEFP------------------- 741
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLV--------NLEVLVLSNN-LLKKLP 442
++L L+ L EL L + KL E +Q L +L L LS+ L +LP
Sbjct: 742 -SNLRLE-----NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795
Query: 443 SSIGNLRKLKCLDLEENK-LESLPNEIGF-------------LK-------ELQRLILQS 481
SSI NL KL+ L++E LE+LP I L+ + L L
Sbjct: 796 SSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855
Query: 482 NQLVSLPRAIGHLTNLSYLSV-GENNLQSIPEEIGTLENLHTLYLNDNTCL-----NNIP 535
+ +P I +NLS+L + G NNLQ + I L++L T+ +D L N P
Sbjct: 856 TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSP 915
Query: 536 FELALCSN 543
E+A+ ++
Sbjct: 916 SEVAMATD 923
Score = 52.2 bits (125), Expect = 6e-07
Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 40/219 (18%)
Query: 378 RAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSN-N 436
R +NL K+ M+ + L L + + GL ++L ++ K D+ NLE L LS+ +
Sbjct: 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS 668
Query: 437 LLKKLPSSIGNLRKLKCLDLEE-NKLESLPNEIGFLKELQRLILQS-NQLVSLPRAIGHL 494
L +LPSSI L KL+ LD+ LE LP I LK L RL L ++L S P
Sbjct: 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN-LKSLYRLNLSGCSRLKSFPDIS--- 724
Query: 495 TNLSYLSVGENNLQSIPEEIGTLENL----------------------------HTL--- 523
TN+S+L + E ++ P + LENL +L
Sbjct: 725 TNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783
Query: 524 YLNDNTCLNNIPFELALCSNLQIMSLDNCP-LSQIPSEI 561
+L+D L +P + L+ + ++NC L +P+ I
Sbjct: 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 72.0 bits (176), Expect = 4e-13
Identities = 71/276 (25%), Positives = 122/276 (44%), Gaps = 46/276 (16%)
Query: 239 KNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLE 298
N L L L +P I + TL L +NEL ++P+ L N+ L + N+L
Sbjct: 178 NNKTELRLKILGLTTIPACIPE--QITTLILDNNELKSLPENLQG--NIKTLYANSNQLT 233
Query: 299 SVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSV 358
S+P TL + E ++ ++ LP+ L S+L S++ L NK + P
Sbjct: 234 SIPATLPDTIQEMELSINR--ITELPERLPSALQSLD---LFHNKISCLP---------- 278
Query: 359 YSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKL 418
+ +P L +++ DN + +LP L + G+T LN+ +N ++ L
Sbjct: 279 ----------ENLPEE-------LRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSLTAL 319
Query: 419 SEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLI 478
E + L+ L N L LP+S+ +L+ LD+ +N++ LP + + L
Sbjct: 320 PETLP--PGLKTLEAGENALTSLPASLPP--ELQVLDVSKNQITVLPETLP--PTITTLD 373
Query: 479 LQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEI 514
+ N L +LP + L + NNL +PE +
Sbjct: 374 VSRNALTNLPENLP--AALQIMQASRNNLVRLPESL 407
Score = 62.0 bits (150), Expect = 6e-10
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 18/204 (8%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS 161
NI L + + +T +P ++ ++E+ L N++ LP ++ + L L L N ++
Sbjct: 221 NIKTLYANSNQLTSIPATLPDT--IQEMELSINRITELPERLP--SALQSLDLFHNKISC 276
Query: 162 LPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSML 221
LP++L ++LR L + N + LP L S + T P+ L L
Sbjct: 277 LPENLP--EELRYLSVYDNSIRTLPA---HLPSGITHLNVQSNSLTALPETLPP-GLKTL 330
Query: 222 SMRDNKIRELPPELG-ELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
+N + LP L EL+ L D++ N + LP+ + + TLD+ N L N+P+
Sbjct: 331 EAGENALTSLPASLPPELQVL---DVSKNQITVLPETLP--PTITTLDVSRNALTNLPEN 385
Query: 281 LGNLINLTRLRLSYNRLESVPETL 304
L + + ++ S N L +PE+L
Sbjct: 386 LPAALQI--MQASRNNLVRLPESL 407
Score = 49.7 bits (118), Expect = 4e-06
Identities = 43/182 (23%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 380 KNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLK 439
N +++ +K LT++P + + T L L N++ L E++Q N++ L ++N L
Sbjct: 178 NNKTELRLKILGLTTIPACIPEQI--TTLILDNNELKSLPENLQG--NIKTLYANSNQLT 233
Query: 440 KLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSY 499
+P+++ + ++ ++L N++ LP + LQ L L N++ LP + L Y
Sbjct: 234 SIPATLPD--TIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLPE--ELRY 287
Query: 500 LSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPS 559
LSV +N+++++P + + + L + N+ L +P L L+ + L+ +P+
Sbjct: 288 LSVYDNSIRTLPAHLPS--GITHLNVQSNS-LTALPETLPP--GLKTLEAGENALTSLPA 342
Query: 560 EI 561
+
Sbjct: 343 SL 344
Score = 43.5 bits (102), Expect = 3e-04
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
E + L + +SI LP + + + L + N L +LP + L L EN+LT
Sbjct: 283 EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALT 338
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
SLP SL +L+VLD+ N++ LP + ++ L + N + + ++ + L +
Sbjct: 339 SLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQI 392
Query: 221 LSMRDNKIRELPPEL----GELKNLVTLDLAHNHLEELPKEIGNCTMLVT 266
+ N + LP L GE + + +N E + I N L++
Sbjct: 393 MQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE--RTIQNMQRLMS 440
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 54.8 bits (131), Expect = 9e-08
Identities = 88/341 (25%), Positives = 137/341 (40%), Gaps = 86/341 (25%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
L++ +S +T LP + H+ L + N L SLP+ L L ++ N LTSLP
Sbjct: 206 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL 260
Query: 166 LANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD 225
L +L + N L LP + L L I + + + P +Q LS+ D
Sbjct: 261 PPGLLELSIFS---NPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ------ELSVSD 311
Query: 226 NKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLI 285
N++ LP LP E L L +N+L ++P + L
Sbjct: 312 NQLASLPA--------------------LPSE------LCKLWAYNNQLTSLPTLPSGL- 344
Query: 286 NLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345
L +S N+L S+P S+ L +N +L +LP GL + +S N+ T
Sbjct: 345 --QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGL-------KELIVSGNRLT 395
Query: 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGL 405
+ P +P L ++ + N LTSLP+ GL
Sbjct: 396 SLPV---------------------LP-------SELKELMVSGNRLTSLPM---LPSGL 424
Query: 406 TELNLGTNQISKLSEDIQNL-----VNLEVLVLSNNLLKKL 441
L++ NQ+++L E + +L VNLE LS L+ L
Sbjct: 425 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465
Score = 53.6 bits (128), Expect = 2e-07
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 24/231 (10%)
Query: 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSL 162
+L L + + +THLP L +L+++GN+L SLP L L +++N L SL
Sbjct: 264 LLELSIFSNPLTHLPALPSGLC---KLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL 317
Query: 163 PDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLS 222
P + L +L + N+L LP + L L + + + T+ S L L
Sbjct: 318 PALPSELCKLWAYN---NQLTSLPTLPSGLQELSVSDNQLASLPTLP------SELYKLW 368
Query: 223 MRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLG 282
+N++ LP LK L+ L LP E L L + N L ++P +
Sbjct: 369 AYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSE------LKELMVSGNRLTSLPMLPS 422
Query: 283 NLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333
L++L+ R N+L +PE+L N+EG LS L +TS
Sbjct: 423 GLLSLSVYR---NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITS 470
Score = 53.2 bits (127), Expect = 3e-07
Identities = 76/300 (25%), Positives = 129/300 (43%), Gaps = 42/300 (14%)
Query: 219 SMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI 277
++L++ ++ + LP L + LV D L LP E L TL++ N+L ++
Sbjct: 204 AVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPE------LRTLEVSGNQLTSL 257
Query: 278 PDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNI 337
P + L+ L+ L ++P L K L F + +L LP GL +
Sbjct: 258 PVLPPGLLELSIFSNPLTHLPALPSGLCK---LWIFGNQLTSLPVLPPGL-------QEL 307
Query: 338 TLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL 397
++S N+ + P+ P++ +++ N + + +P G L ++++ DN L SLP
Sbjct: 308 SVSDNQLASLPAL-PSELCKLWAYNNQLTSLPTLPSG-------LQELSVSDNQLASLPT 359
Query: 398 DLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLE 457
L N + L L+ L++S N L LP L++L +
Sbjct: 360 LPSELYKLWAYNNRLTSLPALPS------GLKELIVSGNRLTSLPVLPSELKELM---VS 410
Query: 458 ENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLT-----NLSYLSVGENNLQSIPE 512
N+L SLP L L + NQL LP ++ HL+ NL + E LQ++ E
Sbjct: 411 GNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467
Score = 51.3 bits (122), Expect = 1e-06
Identities = 75/274 (27%), Positives = 117/274 (42%), Gaps = 50/274 (18%)
Query: 313 FNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIP 372
NV L++LPD L + +T++ + N T+ P+ P + ++ NQ+ +P
Sbjct: 206 LNVGESGLTTLPDCLPAHITTL---VIPDNNLTSLPALPP----ELRTLEVSGNQLTSLP 258
Query: 373 --------YGIFSRA--------KNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQIS 416
IFS L K+ + N LTSLP+ GL EL++ NQ++
Sbjct: 259 VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLA 315
Query: 417 KLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFL----- 471
L L L NN L LP+ L++L D + L +LP+E+ L
Sbjct: 316 SLPALPSELCKLWAY---NNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN 372
Query: 472 ---------KELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHT 522
L+ LI+ N+L SLP + L L V N L S+P L +L +
Sbjct: 373 RLTSLPALPSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPMLPSGLLSL-S 428
Query: 523 LYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQ 556
+Y N L +P L S+ ++L+ PLS+
Sbjct: 429 VYRNQ---LTRLPESLIHLSSETTVNLEGNPLSE 459
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 52.9 bits (127), Expect = 4e-07
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 231 LPPELGELKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLDLQHNELV-NIPDMLGNLINLT 288
+P ++ +L++L +++L+ N + +P +G+ T L LDL +N +IP+ LG L +L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 289 RLRLSYNRLES-VPETL-SKCVHLNEFNV 315
L L+ N L VP L + +H FN
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNF 522
Score = 51.0 bits (122), Expect = 1e-06
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 116 LPPSVEKLTHLEELYLYGNKL-ASLPSQIGYVTNLTCLGLAENSLT-SLPDSLANLQQLR 173
+P + KL HL+ + L GN + ++P +G +T+L L L+ NS S+P+SL L LR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 174 VLDLRHNKLN-ELP 186
+L+L N L+ +P
Sbjct: 494 ILNLNGNSLSGRVP 507
Score = 49.8 bits (119), Expect = 3e-06
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 418 LSEDIQNLVNLEVLVLSNNLLK-KLPSSIGNLRKLKCLDLEENKLE-SLPNEIGFLKELQ 475
+ DI L +L+ + LS N ++ +P S+G++ L+ LDL N S+P +G L L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 476 RLILQSNQLVS-LPRAIG 492
L L N L +P A+G
Sbjct: 494 ILNLNGNSLSGRVPAALG 511
Score = 47.9 bits (114), Expect = 1e-05
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 139 LPSQIGYVTNLTCLGLAENSLT-SLPDSLANLQQLRVLDLRHNKLN-ELPMVVYKLTSLK 196
+P+ I + +L + L+ NS+ ++P SL ++ L VLDL +N N +P + +LTSL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 197 ILYLRFNRI 205
IL L N +
Sbjct: 494 ILNLNGNSL 502
Score = 46.7 bits (111), Expect = 2e-05
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 431 LVLSNNLLK-KLPSSIGNLRKLKCLDLEENKLE-SLPNEIGFLKELQRLILQSNQLV-SL 487
L L N L+ +P+ I LR L+ ++L N + ++P +G + L+ L L N S+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 488 PRAIGHLTNLSYLSVGENNLQS-IPEEIGTLENLHTLYLN--DNTCLNNIP 535
P ++G LT+L L++ N+L +P +G LH N DN L IP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LHRASFNFTDNAGLCGIP 532
Score = 43.7 bits (103), Expect = 2e-04
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 211 DIQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLD 268
DI L +L +++ N IR +PP LG + +L LDL++N +P+ +G T L L+
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496
Query: 269 LQHNELV-NIPDMLG 282
L N L +P LG
Sbjct: 497 LNGNSLSGRVPAALG 511
Score = 43.7 bits (103), Expect = 3e-04
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 254 LPKEIGNCTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLE-SVPETLSKCVHLN 311
+P +I L +++L N + NIP LG++ +L L LSYN S+PE+L + L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 312 EFNVEGCALS 321
N+ G +LS
Sbjct: 494 ILNLNGNSLS 503
Score = 37.5 bits (87), Expect = 0.018
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 377 SRAKNLSKVNMKDNLLT-SLPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEVLVLS 434
S+ ++L +N+ N + ++P LG+ L L+L N + + E + L +L +L L+
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498
Query: 435 NNLLK-KLPSSIG 446
N L ++P+++G
Sbjct: 499 GNSLSGRVPAALG 511
Score = 35.9 bits (83), Expect = 0.053
Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 487 LPRAIGHLTNLSYLSVGENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQ 545
+P I L +L +++ N+++ +IP +G++ +L L L+ N+ +IP L ++L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 546 IMSLDNCPLS-QIPSEIVVGG 565
I++L+ LS ++P+ +GG
Sbjct: 494 ILNLNGNSLSGRVPA--ALGG 512
Score = 34.8 bits (80), Expect = 0.13
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 105 NLDLSKSSIT-HLPPSVEKLTHLEELYLYGNKL-ASLPSQIGYVTNLTCLGLAENSLTS- 161
+++LS +SI ++PPS+ +T LE L L N S+P +G +T+L L L NSL+
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505
Query: 162 LPDSL 166
+P +L
Sbjct: 506 VPAAL 510
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 44.1 bits (105), Expect = 3e-06
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 194 SLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHL 251
+LK L L NR+ + + L NL +L + N + + PE L +L +LDL+ N+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 43.3 bits (103), Expect = 7e-06
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 148 NLTCLGLAENSLTSLPD-SLANLQQLRVLDLRHNKLNELPMVV-YKLTSLKILYLRFNRI 205
NL L L+ N LT +PD + L L+VLDL N L + L SL+ L L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 43.3 bits (103), Expect = 7e-06
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 171 QLRVLDLRHNKLNELPMVV-YKLTSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKI 228
L+ LDL +N+L +P L +LK+L L N + ++ P+ L +L L + N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 42.1 bits (100), Expect = 2e-05
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 427 NLEVLVLSNNLLKKLP-SSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQL 484
NL+ L LSNN L +P + L LK LDL N L S+ P L L+ L L N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 39.1 bits (92), Expect = 2e-04
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 217 NLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKE-IGNCTMLVTLDLQHNEL 274
NL L + +N++ +P L NL LDL+ N+L + E L +LDL N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 38.7 bits (91), Expect = 3e-04
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 264 LVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCAL 320
L +LDL +N L IPD L NL L LS N L S+ PE S L ++ G L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 38.7 bits (91), Expect = 4e-04
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 23/79 (29%)
Query: 105 NLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP 163
+LDLS + +T +P + L +L+ L L GN L S+ P
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS----------------------P 41
Query: 164 DSLANLQQLRVLDLRHNKL 182
++ + L LR LDL N L
Sbjct: 42 EAFSGLPSLRSLDLSGNNL 60
Score = 38.3 bits (90), Expect = 5e-04
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 404 GLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPS-SIGNLRKLKCLDLEENKL 461
L L+L N+++ + + + L NL+VL LS N L + + L L+ LDL N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 36.4 bits (85), Expect = 0.002
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 474 LQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDN 528
L+ L L +N+L +P A L NL L + NNL SI E L +L +L L+ N
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 33.7 bits (78), Expect = 0.019
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 450 KLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNL 507
LK LDL N+L +P+ L L+ L L N L S+ P A L +L L + NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 29.8 bits (68), Expect = 0.46
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 309 HLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQI 368
+L ++ L+ +PDG L ++ + LS N T+ + S+ S++ N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 29.4 bits (67), Expect = 0.65
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 496 NLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPL 554
NL L + N L IP+ L NL L L+ N + P + +L+ + L L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 28.3 bits (64), Expect = 1.7
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 22/82 (26%)
Query: 357 SVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQIS 416
++ S++ +N++ IP G F NL +++ N LTS+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-------------------- 40
Query: 417 KLSEDIQNLVNLEVLVLSNNLL 438
E L +L L LS N L
Sbjct: 41 --PEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 37.9 bits (89), Expect = 4e-04
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 427 NLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPN 466
NLE L LSNN + LP + NL L+ LDL NK+ L
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 36.3 bits (85), Expect = 0.001
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELP 255
NL L + +N+I +LPP L L NL TLDL+ N + +L
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39
Score = 35.5 bits (83), Expect = 0.003
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 147 TNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELP 186
TNL L L+ N +T LP L+NL L LDL NK+ +L
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 34.8 bits (81), Expect = 0.006
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 239 KNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
NL TLDL++N + +LP + N L TLDL N++ ++
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 33.6 bits (78), Expect = 0.012
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 193 TSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPP 233
T+L+ L L N+I + P + L NL L + NKI +L P
Sbjct: 1 TNLETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITDLSP 40
Score = 33.6 bits (78), Expect = 0.014
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 405 LTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPS 443
L L+L NQI+ L + NL NLE L LS N + L
Sbjct: 3 LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 33.6 bits (78), Expect = 0.014
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 170 QQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHP 210
L LDL +N++ +LP + L +L+ L L N+I + P
Sbjct: 1 TNLETLDLSNNQITDLPPLS-NLPNLETLDLSGNKITDLSP 40
Score = 32.8 bits (76), Expect = 0.024
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 262 TMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE 302
T L TLDL +N++ ++P L NL NL L LS N++ +
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 31.3 bits (72), Expect = 0.081
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 472 KELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPE 512
L+ L L +NQ+ LP + +L NL L + N + +
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 30.9 bits (71), Expect = 0.10
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 124 THLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP 163
T+LE L L N++ LP + + NL L L+ N +T L
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39
Score = 30.2 bits (69), Expect = 0.23
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPS 141
LDLS + IT LPP + L +LE L L GNK+ L
Sbjct: 5 TLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 29.8 bits (68), Expect = 0.31
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 450 KLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLP 488
L+ LDL N++ LP + L L+ L L N++ L
Sbjct: 2 NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 29.4 bits (67), Expect = 0.37
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 495 TNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDN 528
TNL L + N + +P + L NL TL L+ N
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGN 33
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 35.4 bits (82), Expect = 0.059
Identities = 59/299 (19%), Positives = 96/299 (32%), Gaps = 69/299 (23%)
Query: 194 SLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRE-----LPPELGELKNLVTLDLAH 248
SLK L+ R + P + L +L + N + E L L +L L L+
Sbjct: 4 SLKGELLKTERATELLPKLL---CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL 60
Query: 249 NHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRL-----ESVPET 303
N +P+ + + L L L LS N L +
Sbjct: 61 NETGRIPRGLQSL----------------LQGLTKGCGLQELDLSDNALGPDGCGVLESL 104
Query: 304 LSKC----VHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVY 359
L + LN + L L GL ++ + L RN+
Sbjct: 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG---ASCEALAKAL 161
Query: 360 SINFEHNQIDKIPYGIFSRAKNLSKVNMKDN-----LLTSLPLDLGTWVGLTELNLGTNQ 414
N ++L ++N+ +N + +L L L L+L N
Sbjct: 162 RAN-----------------RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204
Query: 415 I-----SKLSEDIQNLVNLEVLVLSNNLL------KKLPSSIGNLRKLKCLDLEENKLE 462
+ S L+E + +L +LEVL L +N L + + L L L N +
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263
Score = 34.6 bits (80), Expect = 0.11
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 31/180 (17%)
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLS----EDIQNLVNLEVLVLSNNLLKK--LPSSI 445
L SL L GL EL+L N + E + +L+ L L+NN L L
Sbjct: 70 LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129
Query: 446 GNLRKLKC----LDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLT--NLSY 499
L+ L L L N+LE E L RA L NL+
Sbjct: 130 KGLKDLPPALEKLVLGRNRLEGASCE---------------ALAKALRANRDLKELNLAN 174
Query: 500 LSVGENNLQSIPEEIGTLENLHTLYLNDN--TCLNNIPFELALCSN--LQIMSLDNCPLS 555
+G+ ++++ E + NL L LN+N T L S L++++L + L+
Sbjct: 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234
Score = 33.1 bits (76), Expect = 0.36
Identities = 60/295 (20%), Positives = 95/295 (32%), Gaps = 64/295 (21%)
Query: 80 KKKEPIQADLNIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTH---LEELYLYGNKL 136
K + L C + L L+ + L L+EL L N+
Sbjct: 6 KGELLKTERATELLPKLLCLQV--LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET 63
Query: 137 ASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKL---- 192
+P + SL L L+ LDL N L V +
Sbjct: 64 GRIPRGLQ----------------SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS 107
Query: 193 TSLKILYLRFNRIKTVHPDI------QYLSNLSMLSMRDNKI-----RELPPELGELKNL 241
+SL+ L L N + + L L + N++ L L ++L
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167
Query: 242 VTLDLAHNHLEE-----LPKEIGNCTMLVTLDLQHNEL-----VNIPDMLGNLINLTRLR 291
L+LA+N + + L + + L LDL +N L + + L +L +L L
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227
Query: 292 LSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTA 346
L N L ++L LLS S+ ++LS N T
Sbjct: 228 LGDNNLTDAG------------------AAALASALLSPNISLLTLSLSCNDITD 264
Score = 30.8 bits (70), Expect = 2.2
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 106 LDLSKSSITH-----LPPSVEKLTHLEELYLYGNKLAS------LPSQIGYVTNLTCLGL 154
LDL+ + +T L ++ L LE L L N L + + +L L L
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257
Query: 155 AENSLT-----SLPDSLANLQQLRVLDLRHNKLNE 184
+ N +T L + LA + L LDLR NK E
Sbjct: 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292
Score = 30.0 bits (68), Expect = 3.5
Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 35/185 (18%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSL-----T 160
L L + LPP++EKL L L G +L + +L L LA N +
Sbjct: 125 LRLLAKGLKDLPPALEKLV-LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
+L + L L VLDL +N L + T + L +L +
Sbjct: 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAET------------------LASLKSLEV 225
Query: 221 LSMRDNKIRE------LPPELGELKNLVTLDLAHNHLEE-----LPKEIGNCTMLVTLDL 269
L++ DN + + L +L+TL L+ N + + L + + L+ LDL
Sbjct: 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285
Query: 270 QHNEL 274
+ N+
Sbjct: 286 RGNKF 290
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 29.2 bits (67), Expect = 0.34
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 238 LKNLVTLDLAHNHLEELPKEIGNC 261
L NL LDL++N L LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 28.5 bits (65), Expect = 0.62
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 123 LTHLEELYLYGNKLASLPSQI 143
L +L EL L N+L+SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 27.3 bits (62), Expect = 1.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 425 LVNLEVLVLSNNLLKKLPSSI 445
L NL L LSNN L LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 27.3 bits (62), Expect = 1.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 169 LQQLRVLDLRHNKLNELP 186
L LR LDL +N+L+ LP
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
Score = 26.9 bits (61), Expect = 2.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 284 LINLTRLRLSYNRLESVPETLSKC 307
L NL L LS N+L S+P +
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 26.5 bits (60), Expect = 3.1
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 192 LTSLKILYLRFNRIKTVHPDI 212
L +L+ L L N++ ++ P
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 26.2 bits (59), Expect = 3.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 448 LRKLKCLDLEENKLESLPNEI 468
L L+ LDL N+L SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.8 bits (58), Expect = 4.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 471 LKELQRLILQSNQLVSLPRAIGH 493
L L+ L L +NQL SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 29.2 bits (67), Expect = 0.34
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 238 LKNLVTLDLAHNHLEELPKEIGNC 261
L NL LDL++N L LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 28.5 bits (65), Expect = 0.62
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 123 LTHLEELYLYGNKLASLPSQI 143
L +L EL L N+L+SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 27.3 bits (62), Expect = 1.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 425 LVNLEVLVLSNNLLKKLPSSI 445
L NL L LSNN L LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 27.3 bits (62), Expect = 1.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 169 LQQLRVLDLRHNKLNELP 186
L LR LDL +N+L+ LP
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
Score = 26.9 bits (61), Expect = 2.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 284 LINLTRLRLSYNRLESVPETLSKC 307
L NL L LS N+L S+P +
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 26.5 bits (60), Expect = 3.1
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 192 LTSLKILYLRFNRIKTVHPDI 212
L +L+ L L N++ ++ P
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 26.2 bits (59), Expect = 3.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 448 LRKLKCLDLEENKLESLPNEI 468
L L+ LDL N+L SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.8 bits (58), Expect = 4.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 471 LKELQRLILQSNQLVSLPRAIGH 493
L L+ L L +NQL SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 31.1 bits (70), Expect = 1.6
Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 23/148 (15%)
Query: 93 KEFLRCKEENILNLDLSKSSITHLPPSVEKLTH---LEELYLYGNKLASLPSQIGYVTNL 149
K L+C ++L + + ++ L L L N L G
Sbjct: 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP---IAGGRIGK 142
Query: 150 TCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLT-----SLKILYLRFNR 204
LA N A+ +L V+ N+L + +LK + ++ N
Sbjct: 143 ALFHLAYNK------KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG 196
Query: 205 IKT------VHPDIQYLSNLSMLSMRDN 226
I+ + Y +L +L ++DN
Sbjct: 197 IRPEGVTMLAFLGLFYSHSLEVLDLQDN 224
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 30.8 bits (70), Expect = 2.6
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 167 ANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDN 226
A LQ R +LNEL + + +L +L L R K PD Y++ L +LS
Sbjct: 878 AELQSNVRKSYRQVRLNELLLEYSRDAALVVLSLPVPR-KGSIPDELYMAWLEVLS---- 932
Query: 227 KIRELPPEL---GELKNLVTL 244
+LPP L G +N++T
Sbjct: 933 --EDLPPVLLVRGNHRNVLTF 951
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may not
find all Leucine Rich Repeats in a protein. Leucine Rich
Repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 22
Score = 26.4 bits (59), Expect = 3.7
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 427 NLEVLVLSNNLLKKLPSSIGNL 448
NLE L LSNN L LP S+GNL
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
Score = 26.0 bits (58), Expect = 4.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 240 NLVTLDLAHNHLEELPKEIGNC 261
NL LDL++N+L LP +GN
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 28.9 bits (65), Expect = 3.8
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 43 YGYFEDMPEKDNKKCGVDVKKTVTVKHPESNKPKPTTKKKEPIQADLNIEKEFLRCKEE 101
Y + ++D+ K G + VTV H + K + +A ++E LR ++
Sbjct: 60 YSWAVHYYDEDDIKVGKPINCRVTVNHTV--ELTEEEKAEARKEALKAYQQEELRKIQK 116
>gnl|CDD|172369 PRK13842, PRK13842, conjugal transfer protein TrbJ; Provisional.
Length = 267
Score = 29.4 bits (66), Expect = 5.4
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 412 TNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNE--- 467
QIS+L+E IQN +N+ +L N +LP+ I G + DL N+L S+ N+
Sbjct: 64 ITQISQLAEQIQNQLNIYQNMLQN--TAQLPNHIWGQVEN----DL--NRLRSIVNQGQG 115
Query: 468 IGF 470
I F
Sbjct: 116 IAF 118
>gnl|CDD|173353 PTZ00057, PTZ00057, glutathione s-transferase; Provisional.
Length = 205
Score = 28.4 bits (63), Expect = 8.1
Identities = 25/86 (29%), Positives = 37/86 (43%)
Query: 388 KDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGN 447
K N T L +L W G E L N + D +L V L +++ K P+S+ N
Sbjct: 117 KQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYDDIETKYPNSLKN 176
Query: 448 LRKLKCLDLEENKLESLPNEIGFLKE 473
LK + + L ++ N I KE
Sbjct: 177 FPLLKAHNEFISNLPNIKNYISNRKE 202
>gnl|CDD|150282 pfam09554, RE_HaeII, HaeII restriction endonuclease. This family
includes the HaeII (recognises and cleaves RGCGC^Y)
restriction endonuclease.
Length = 338
Score = 28.6 bits (64), Expect = 9.1
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 426 VNLEVLVLSNNLLKKLPSSIGNLR-KLKCLDLEENKLESLPNEIGFLKELQRLILQSNQL 484
V ++ L L L + + SSI R + C EE + SL N+IG+ +Q +I + + +
Sbjct: 231 VQIKHLSLDEELAENIVSSITADRIVIVCKSAEEEVIVSLLNQIGWKSRIQSIITEDDLI 290
Query: 485 VSLPRA-IGHLTNLSYLSVGENNLQSIPEEI 514
+A G + L +GE ++++ EEI
Sbjct: 291 DWYDKALRGKYSEL----LGEKLIETLSEEI 317
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.371
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,660,264
Number of extensions: 2774282
Number of successful extensions: 1991
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1738
Number of HSP's successfully gapped: 144
Length of query: 582
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 480
Effective length of database: 6,413,494
Effective search space: 3078477120
Effective search space used: 3078477120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (27.7 bits)