RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10956
(582 letters)
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 274 bits (702), Expect = 3e-82
Identities = 85/476 (17%), Positives = 181/476 (38%), Gaps = 59/476 (12%)
Query: 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP 163
+ + IT + ++++LT L+ +Y + + +
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD---WEDANSDYAKQYENEE 484
Query: 164 DSLANLQQLRVLDLRH-NKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLS 222
S +NL+ L ++L + + +LP +Y L L+ L + NR + + L
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL---- 540
Query: 223 MRDNKIRELPPELGELKNLVTLDLAHNHLEELPKE--IGNCTMLVTLDLQHNELVNIPDM 280
+ + + +N+LEE P + L LD HN++ ++
Sbjct: 541 ---------ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA- 590
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCV-HLNEFNVEGCALSSLPDGL-LSSLTSINNIT 338
G + LT L+L YN++E +PE + L +P+ S+ + ++
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650
Query: 339 LSRNKFTAYPSGGPT-----QFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
S NK + + + ++ +N+I K P +F+ +S + + +NL+T
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710
Query: 394 SLPLD--------LGTWVGLTELNLGTNQISKLSEDIQ--NLVNLEVLVLSNNLLKKLPS 443
S+P + LT ++L N+++ LS+D + L L + +S N P+
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770
Query: 444 SIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLV-SLPRAIGHLTNLSYLSV 502
N +LK + + N+++ P I +L L +
Sbjct: 771 QPLNSSQLKAFGIRHQ-----------------RDAEGNRILRQWPTGITTCPSLIQLQI 813
Query: 503 GENNLQSIPEEIGTLENLHTLYLNDN--TCLNNIPFELALCSNLQIMSLDNCPLSQ 556
G N+++ + E++ L+ L + DN ++ + + + ++ D +
Sbjct: 814 GSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867
Score = 249 bits (636), Expect = 7e-73
Identities = 95/540 (17%), Positives = 183/540 (33%), Gaps = 81/540 (15%)
Query: 106 LDLSKSSIT-HLPPSVEKLTHLEELYLYGNKLASLPSQIG-------------------- 144
L L+ +P ++ +LT L+ L + G
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387
Query: 145 ------YVTNLTCLGLAENSLTSLP-------DSLANLQQLRVLDLRHNKLNELPMVVYK 191
Y L L ++++ P DS +L+ ++ +L N++ + + +
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRITFISKAIQR 446
Query: 192 LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAH-NH 250
LT L+I+Y + + + S + LK+L ++L + +
Sbjct: 447 LTKLQIIYFANSPFTYDNIAV---DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503
Query: 251 LEELPKEIGNCTMLVTLDLQHNELV----------NIPDMLGNLINLTRLRLSYNRLESV 300
+ +LP + + L +L++ N + + D + + YN LE
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563
Query: 301 PE--TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSV 358
P +L K V L + + L + + ++ L N+ P V
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621
Query: 359 YSINFEHNQIDKIPYGI-FSRAKNLSKVNMKDNLLTSLPLDLGTWVG------LTELNLG 411
+ F HN++ IP + V+ N + S ++ + + + L
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681
Query: 412 TNQISKL-SEDIQNLVNLEVLVLSNNLLKKLPS--------SIGNLRKLKCLDLEENKLE 462
N+I K +E + ++LSNNL+ +P + N L +DL NKL
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741
Query: 463 SLPNEIGF--LKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGEN-------NLQSIPEE 513
SL ++ L L + + N S P + + L + L+ P
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801
Query: 514 IGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYL 573
I T +L L + N + + + L L I+ + + P I V + L
Sbjct: 802 ITTCPSLIQLQIGSN-DIRKVDEK--LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858
Score = 212 bits (541), Expect = 1e-59
Identities = 79/456 (17%), Positives = 156/456 (34%), Gaps = 47/456 (10%)
Query: 147 TNLTCLGLAENSLT-SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLT-SLKILYLRFNR 204
+T L LA +PD++ L +L+VL + + + + R +R
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382
Query: 205 IKTVHPD--IQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAH-------NHLEELP 255
I+ + + Y L++ + + I P E+ +K + L N + +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLTNRITFIS 441
Query: 256 KEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNV 315
K I T L + ++ + + E+ + S L + +
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVD---WEDANSDYAKQYENEELSWSNLKDLTDVEL 498
Query: 316 EGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGP---------TQFTSVYSINFEHN 366
C + L L + ++ ++ N+ + + +N
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558
Query: 367 QIDKIP-YGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QN 424
+++ P + L ++ N + L GT V LT+L L NQI ++ ED
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAF 617
Query: 425 LVNLEVLVLSNNLLKKLPS--SIGNLRKLKCLDLEENKLESLPNEIGF------LKELQR 476
+E L S+N LK +P+ + ++ + +D NK+ S I
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677
Query: 477 LILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIPEE--------IGTLENLHTLYLND 527
+ L N++ P + +S + + N + SIPE L T+ L
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737
Query: 528 NTCLNNIPFELALC--SNLQIMSLDNCPLSQIPSEI 561
N L ++ + L M + S P++
Sbjct: 738 N-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772
Score = 169 bits (430), Expect = 7e-45
Identities = 51/301 (16%), Positives = 106/301 (35%), Gaps = 31/301 (10%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVT-NLTCLGLAE 156
K + LD + + HL + L +L L N++ +P T + LG +
Sbjct: 570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628
Query: 157 NSLTSLPD--SLANLQQLRVLDLRHNKLNELP------MVVYKLTSLKILYLRFNRIKTV 208
N L +P+ + ++ + +D +NK+ M YK + + L +N I+
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688
Query: 209 HPDI-QYLSNLSMLSMRDNKIRELPPE--------LGELKNLVTLDLAHNHLEELPKEI- 258
++ S +S + + +N + +P L T+DL N L L +
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748
Query: 259 -GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNR-------LESVPETLSKCVHL 310
L +D+ +N + P N L + + R L P ++ C L
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808
Query: 311 NEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDK 370
+ + + + + L L ++ ++ N + + +++
Sbjct: 809 IQLQIGSNDIRKVDEKLTPQLYILD---IADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865
Query: 371 I 371
I
Sbjct: 866 I 866
Score = 118 bits (296), Expect = 7e-28
Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 28/222 (12%)
Query: 90 NIEKEFLRCKEENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTN 148
NI K N + LS + I P + + + + L N + S+P
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP-------- 713
Query: 149 LTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELP--MVVYKLTSLKILYLRFNRIK 206
ENSL + N L +DLR NKL L L L + + +N
Sbjct: 714 -------ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766
Query: 207 TVHPDIQYLSNLSMLSMRDNKI-------RELPPELGELKNLVTLDLAHNHLEELPKEIG 259
+ S L +R + R+ P + +L+ L + N + ++ +++
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL- 825
Query: 260 NCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESV 300
L LD+ N ++I + I L Y++ + +
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866
Score = 91.1 bits (226), Expect = 3e-19
Identities = 34/263 (12%), Positives = 85/263 (32%), Gaps = 32/263 (12%)
Query: 330 SLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD 389
+L +I +N + T + ++ N E + P ++ +++
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332
Query: 390 N-LLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL---PSSI 445
+P +G L L+ GT+ + + + ++ +
Sbjct: 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392
Query: 446 GNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQ-------SNQLVSLPRAIGHLTNLS 498
++L DL ++ + P E+ +K+ R+ L+ +N++ + +AI LT L
Sbjct: 393 DYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451
Query: 499 YLSVGENNL--------------------QSIPEEIGTLENLHTLYLNDNTCLNNIPFEL 538
+ + ++ L++L + L + + +P L
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511
Query: 539 ALCSNLQIMSLDNCPLSQIPSEI 561
LQ +++
Sbjct: 512 YDLPELQSLNIACNRGISAAQLK 534
Score = 28.3 bits (63), Expect = 7.9
Identities = 5/64 (7%), Positives = 18/64 (28%)
Query: 513 EIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRY 572
++ + L L +P + + L+++S + + +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 573 LKMQ 576
+
Sbjct: 378 ERKH 381
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 268 bits (687), Expect = 5e-82
Identities = 82/488 (16%), Positives = 182/488 (37%), Gaps = 48/488 (9%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKL-ASLPSQIGYVTNLTCLGLAENSLT 160
+ + K+ + + P E + L + + + S+ T +G N++T
Sbjct: 139 QKMRMHYQKTFVDYDPR--EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 161 SLPDSLANLQQLRVLDLRHNKLN-ELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLS 219
+ ++ L +LR + ++ E ++ + + KT L +L+
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ----YKTEDLKWDNLKDLT 252
Query: 220 MLSMRD-NKIRELPPELGELKNLVTLDLAHNHLEELPK---------EIGNCTMLVTLDL 269
+ + + + +LP L L + +++A N + + + + +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312
Query: 270 QHNELVN--IPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGL 327
+N L + L + L L YN+LE + L N+ ++ +P
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANF 372
Query: 328 LSSLTSINNITLSRNKFTAYPSG-GPTQFTSVYSINFEHNQIDKIPYGIFS-------RA 379
+ N++ + NK P+ + + +I+F +N+I + F +
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 380 KNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKL--------SEDIQNLVNLEV 430
N+S +N+ +N ++ P + T L+ +NL N ++++ +E+ +N L
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492
Query: 431 LVLSNNLLKKLPSSI--GNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVS-- 486
+ L N L KL L L +DL N P + L+ +++ +
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN 552
Query: 487 -----LPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALC 541
P I +L+ L +G N+++ + E+I N+ L + DN ++ +
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPY 610
Query: 542 SNLQIMSL 549
+ L
Sbjct: 611 IEAGMYML 618
Score = 250 bits (640), Expect = 4e-75
Identities = 86/463 (18%), Positives = 169/463 (36%), Gaps = 72/463 (15%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLA--------------------SLPS 141
+ ++IT + +V +LT L + Y+ + +
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243
Query: 142 QIGYVTNLTCLGLAENS-LTSLPDSLANLQQLRVLDLRHNKLNELPMV---------VYK 191
+ + +LT + + LT LP L L +++++++ N+ +
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303
Query: 192 LTSLKILYLRFNRIKTVH--PDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHN 249
++I+Y+ +N +KT +Q + L ML N++ P G L +L+LA+N
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363
Query: 250 HLEELPKEI-GNCTMLVTLDLQHNELVNIPDML--GNLINLTRLRLSYNRLESV------ 300
+ E+P G + L HN+L IP++ ++ ++ + SYN + SV
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Query: 301 --PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSV 358
T K ++++ N+ +S P L S+ + +++I L N T P
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483
Query: 359 YSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP--LDLGTWVGLTELNLGTNQIS 416
F L+ ++++ N LT L T L ++L N S
Sbjct: 484 -----------------FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
Query: 417 KLSEDIQNLVNLEVLVLS-------NNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIG 469
K N L+ + N L++ P I L L + N + + +I
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI- 585
Query: 470 FLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIP 511
+ L ++ N +S+ + + + Q I
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627
Score = 240 bits (614), Expect = 2e-71
Identities = 77/511 (15%), Positives = 157/511 (30%), Gaps = 58/511 (11%)
Query: 102 NILNLDLSKSSIT-HLPPSVEKLTHLEELYLYGNKL-----ASLPSQIGYVTNLTCLGLA 155
+ L L + +P ++ +LT LE L L + P I +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 156 ENSLTSLPDSLANLQQLRVLDLRHNKLN------ELPMVVYKLTSLKILYLRFNRIKTVH 209
+ + DL + +N + + N I V
Sbjct: 142 RMHYQ--KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199
Query: 210 PDIQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLD 268
+ L+ L M ++ E E E +N + + N L ++
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVE 255
Query: 269 LQHNELV-NIPDMLGNLINLTRLRLSYNRLESVPE---------TLSKCVHLNEFNVEGC 318
+ + + +P L L + + ++ NR S + + +
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 319 ALSSLP-DGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
L + P + L + + + N+ + S+N +NQI +IP
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCG 374
Query: 378 RAKNLSKVNMKDNLLTSLP--LDLGTWVGLTELNLGTNQIS--------KLSEDIQNLVN 427
+ + ++ N L +P D + ++ ++ N+I L +N
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434
Query: 428 LEVLVLSNNLLKKLP-SSIGNLRKLKCLDLEENKLESLP--------NEIGFLKELQRLI 478
+ + LSNN + K P L ++L N L +P L +
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494
Query: 479 LQSNQLVSLPRAI--GHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNN--- 533
L+ N+L L L L + + N+ P + L + +
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554
Query: 534 ---IPFELALCSNLQIMSLDNCPLSQIPSEI 561
P + LC +L + + + + ++ +I
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585
Score = 210 bits (537), Expect = 2e-60
Identities = 77/409 (18%), Positives = 159/409 (38%), Gaps = 44/409 (10%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYG-NKLASLPSQIGYVTNLTCLGLAE 156
C+ N + ++ T + L L ++ +Y L LP+ + + + + +A
Sbjct: 224 CEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282
Query: 157 NSLTSLPD---------SLANLQQLRVLDLRHNKLNEL--PMVVYKLTSLKILYLRFNRI 205
N S ++++++ + +N L + K+ L +L +N++
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342
Query: 206 KTVHPDIQYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPK--EIGNCT 262
+ P L+ L++ N+I E+P G + + L AHN L+ +P + + +
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402
Query: 263 MLVTLDLQHNEL--------VNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEF 313
++ +D +NE+ + IN++ + LS N++ P E S L+
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462
Query: 314 NVEGCALSSLPDGL-------LSSLTSINNITLSRNKFTAYPSG-GPTQFTSVYSINFEH 365
N+ G L+ +P + + +I L NK T T + I+ +
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522
Query: 366 NQIDKIPYGIFSRAKNLSKVNMKDN-------LLTSLPLDLGTWVGLTELNLGTNQISKL 418
N K P + + L +++ L P + LT+L +G+N I K+
Sbjct: 523 NSFSKFPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581
Query: 419 SEDIQNLVNLEVLVLSNN-LLKKLPSSIGNLRKLKCLDLEENKLESLPN 466
+E I N+ VL + +N + S + + L +K + +
Sbjct: 582 NEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628
Score = 208 bits (531), Expect = 2e-59
Identities = 73/465 (15%), Positives = 145/465 (31%), Gaps = 53/465 (11%)
Query: 142 QIGYVTNLTCLGLAENSLT-SLPDSLANLQQLRVLDLRHNKL-----NELPMVVYKLTSL 195
+ +T L L + +PD++ L +L VL L + P + S
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 196 KILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIR------ELPPELGELKNLVTLDLAHN 249
+ + + Y + + I + + N
Sbjct: 136 EQKQKMRMHYQ--KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193
Query: 250 HLEELPKEIGNCTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLESVPETLSKCV 308
++ + K + T L + ++ V N + ++
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ----YKTEDLKWDNLK 249
Query: 309 HLNEFNVEGCALS-SLPDGLLSSLTSINNITLSRNKFTAYPS--GGPTQFTSVY------ 359
L + V C LP L +L + I ++ N+ +
Sbjct: 250 DLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 360 SINFEHNQIDKIP-YGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKL 418
I +N + P + K L + N L G+ + L LNL NQI+++
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI 368
Query: 419 SEDI-QNLVNLEVLVLSNNLLKKLPS--SIGNLRKLKCLDLEENKLES--------LPNE 467
+ +E L ++N LK +P+ ++ + +D N++ S L
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428
Query: 468 IGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIP--------EEIGTLE 518
+ + L +NQ+ P+ + LS +++ N L IP E
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488
Query: 519 NLHTLYLNDNTCLNNIPFELALCS--NLQIMSLDNCPLSQIPSEI 561
L ++ L N L + + + L + L S+ P++
Sbjct: 489 LLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532
Score = 161 bits (409), Expect = 1e-42
Identities = 51/387 (13%), Positives = 118/387 (30%), Gaps = 55/387 (14%)
Query: 215 LSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-----ELPKEIGNCTMLVTLD 268
++ LS+ +P +G+L L L L + + PK I
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 269 LQHNELV-NIPDMLGNLI--NLTRLRLSYNRLE-SVPETLSKCVHLNEFNVEGCALSSLP 324
D +L + ++ + + S+ ++ + + ++ +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199
Query: 325 DGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSK 384
+ LT + + + F + + N E+
Sbjct: 200 KAV-MRLTKLRQFYMGNSPFV-----AENICEAWENENSEYA------------------ 235
Query: 385 VNMKDNLLTSLPLDLGTWVGLTELNL-GTNQISKLSEDIQNLVNLEVLVLSNNLLKKLP- 442
+ L LT++ + ++KL ++ L ++++ ++ N
Sbjct: 236 -----QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290
Query: 443 --------SSIGNLRKLKCLDLEENKLESL--PNEIGFLKELQRLILQSNQLVSLPRAIG 492
+ K++ + + N L++ + +K+L L NQL A G
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350
Query: 493 HLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIP--FELALCSNLQIMSL 549
L+ L++ N + IP G E + L N L IP F+ S + +
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDF 409
Query: 550 DNCPLSQIPSEIVVGGPSLIIRYLKMQ 576
+ + + + + +
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVS 436
Score = 71.6 bits (176), Expect = 3e-13
Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 10/126 (7%)
Query: 91 IEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLAS-------LPSQI 143
+ +F ++ +DLS +S + P + L+ + + A P I
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562
Query: 144 GYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRF 202
+LT L + N + + + + + VLD++ N + + V + L +
Sbjct: 563 TLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620
Query: 203 NRIKTV 208
++ + +
Sbjct: 621 DKTQDI 626
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 247 bits (633), Expect = 5e-76
Identities = 106/457 (23%), Positives = 184/457 (40%), Gaps = 49/457 (10%)
Query: 100 EENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSL 159
E N + + + EL L L+SLP +L L + NSL
Sbjct: 47 ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSL 103
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLS 219
T LP+ +L+ L V + L++LP L+ L + N+++ + P++Q S L
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEKL-PELQNSSFLK 156
Query: 220 MLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD 279
++ + +N +++LP +L + +N LEELP E+ N L + +N L +PD
Sbjct: 157 IIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD 212
Query: 280 MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITL 339
+ +L + N LE +PE L L + L +LPD S+ + +
Sbjct: 213 LPLSL---ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNV 264
Query: 340 SRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL 399
N T P S+ ++ N + NL +N N + SL
Sbjct: 265 RDNYLTDLPE----LPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSLC--- 313
Query: 400 GTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEEN 459
L ELN+ N++ +L L E L+ S N L ++P NL++ L +E N
Sbjct: 314 DLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQNLKQ---LHVEYN 367
Query: 460 KLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLEN 519
L P+ +++L+ ++ L +P NL L V N L+ P+ ++E+
Sbjct: 368 PLREFPDIPESVEDLR----MNSHLAEVPELPQ---NLKQLHVETNPLREFPDIPESVED 420
Query: 520 LHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQ 556
L +N ++ F L+ ++
Sbjct: 421 ---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454
Score = 197 bits (503), Expect = 4e-57
Identities = 89/416 (21%), Positives = 152/416 (36%), Gaps = 51/416 (12%)
Query: 147 TNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKL-NELPMVVYKLTSLKILYLRFNRI 205
T L ++LT +P N++ ++ P + + + LR
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 206 KTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLV 265
+ L + + + LP +L +L + N L ELP+ + L+
Sbjct: 71 R----------QAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLL 117
Query: 266 TLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPD 325
+ L ++P L L +S N+LE +PE L L +V+ +L LPD
Sbjct: 118 VDNNNLKALSDLPP------LLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPD 170
Query: 326 GLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKV 385
S+ I N+ P + +I ++N + K+P +L +
Sbjct: 171 ----LPPSLEFIAAGNNQLEELPELQ--NLPFLTAIYADNNSLKKLPDLPL----SLESI 220
Query: 386 NMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSI 445
+N+L LP +L LT + N + L + +L E L + +N L LP
Sbjct: 221 VAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSL---EALNVRDNYLTDLPELP 276
Query: 446 GNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGEN 505
+L L + + L LP L L SN++ SL +L L+V N
Sbjct: 277 QSLTFLDVSENIFSGLSELP------PNLYYLNASSNEIRSLC---DLPPSLEELNVSNN 327
Query: 506 NLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEI 561
L +P L L + N L +P NL+ + ++ PL + P
Sbjct: 328 KLIELPALPP---RLERLIASFN-HLAEVPELP---QNLKQLHVEYNPLREFPDIP 376
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 244 bits (625), Expect = 1e-72
Identities = 133/513 (25%), Positives = 218/513 (42%), Gaps = 46/513 (8%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSL 159
+ +LD+ ++I+ L P + +KL L+ L L N+L+ L + + TNLT L L NS+
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 160 TSL-PDSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPD---IQY 214
+ + + L LDL HN L+ + +L +L+ L L N+I+ + + I
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169
Query: 215 LSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHL-EELPKEIG---NCTMLVTLDL 269
S+L L + N+I+E P + L L L + L L +++ T + L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 270 QHNELVNI-PDMLGNL--INLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSLPD 325
+++L L NLT L LSYN L V ++ + L F +E + L
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 326 GLLSSLTSINNITLSRN---------KFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIF 376
L L ++ + L R+ + +N E N I I +F
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349
Query: 377 SRAKNLSKVNMKDNLLTSLPLDLGTWVG-----LTELNLGTNQISKL-SEDIQNLVNLEV 430
+ NL +++ ++ + L T+V L LNL N+ISK+ S+ L +LEV
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 431 LVLSNNLLKKL--PSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQL--- 484
L L N + + L + + L NK L N + LQRL+L+ L
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Query: 485 VSLPRAIGHLTNLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDN--------TCLNNIP 535
S P L NL+ L + NN+ +I ++ + LE L L L N
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 536 FELALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
+ L S+L I++L++ +IP E+ L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Score = 237 bits (608), Expect = 3e-70
Identities = 108/509 (21%), Positives = 199/509 (39%), Gaps = 41/509 (8%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSL-P 163
D S +T +P + T++ L L N+L L + + LT L + N+++ L P
Sbjct: 9 ADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 164 DSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPD-IQYLSNLSML 221
+ L L+VL+L+HN+L++L T+L L+L N I+ + + NL L
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126
Query: 222 SMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKE---IGNCTMLVTLDLQHNELVNI 277
+ N + +L+NL L L++N ++ L E I + L L+L N++
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186
Query: 278 -PDMLGNLINLTRLRLSYNRL-ESVPETLS---KCVHLNEFNVEGCALSSLPDGLLSSL- 331
P + L L L+ +L S+ E L + ++ LS+ + L
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246
Query: 332 -TSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
T++ + LS N + + E+N I + N+ +N+K +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 391 LLTSL----------PLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLK 439
L LN+ N I + ++ L+NL+ L LSN+
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 440 KLPSSIGNLR-----KLKCLDLEENKLESLPNE-IGFLKELQRLILQSNQLVSL--PRAI 491
+ L L+L +NK+ + ++ +L L+ L L N++ +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 492 GHLTNLSYLSVGENNLQSI-PEEIGTLENLHTLYLNDN--TCLNNIPFELALCSNLQIMS 548
L N+ + + N + + +L L L +++ P NL I+
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 549 LDNCPLSQIPSEIVVGGPSLIIRYLKMQG 577
L N ++ I +++ G L L +Q
Sbjct: 487 LSNNNIANINDDMLEGLEKL--EILDLQH 513
Score = 222 bits (567), Expect = 2e-64
Identities = 105/513 (20%), Positives = 198/513 (38%), Gaps = 46/513 (8%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSL 159
+ L+L + ++ L T+L EL+L N + + + NL L L+ N L
Sbjct: 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Query: 160 TSL-PDSLANLQQLRVLDLRHNKLNELP---MVVYKLTSLKILYLRFNRIKTVHPD-IQY 214
+S + L+ L+ L L +NK+ L + ++ +SLK L L N+IK P
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193
Query: 215 LSNLSMLSMRDNKIRELPPE----LGELKNLVTLDLAHNHLEELPKEIG---NCTMLVTL 267
+ L L + + ++ E ++ L L+++ L T L L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253
Query: 268 DLQHNELVNI-PDMLGNLINLTRLRLSYNRLESVP----------ETLSKCVHLNEFNVE 316
DL +N L + D L L L YN ++ + L+ + ++
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313
Query: 317 GCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHN--QIDKIPYG 374
+L + D L + ++ + N S T ++ ++ ++ + +
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373
Query: 375 IFS--RAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKL--SEDIQNLVNLE 429
F L +N+ N ++ + D L L+LG N+I + ++ + L N+
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433
Query: 430 VLVLSNNLLKKL-PSSIGNLRKLKCLDLEENKLESL---PNEIGFLKELQRLILQSNQLV 485
+ LS N +L +S + L+ L L L+++ P+ L+ L L L +N +
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493
Query: 486 SLP-RAIGHLTNLSYLSVGENNLQSIPEE---------IGTLENLHTLYLNDNTCLNNIP 535
++ + L L L + NNL + + + L +LH L L N
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553
Query: 536 FELALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
L+I+ L L+ +P+ + SL
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Score = 201 bits (513), Expect = 9e-57
Identities = 94/471 (19%), Positives = 186/471 (39%), Gaps = 44/471 (9%)
Query: 91 IEKEFLRCKEENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKL-ASLPSQIGYV-- 146
+E ++ L+LS + I P + L L+L +L SL ++
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220
Query: 147 -TNLTCLGLAENSLTSL-PDSLANLQ--QLRVLDLRHNKLNEL-PMVVYKLTSLKILYLR 201
T++ L L+ + L++ + L+ L +LDL +N LN + L L+ +L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280
Query: 202 FNRIKTVHPD-IQYLSNLSMLSMRDN---------KIRELPPE-LGELKNLVTLDLAHNH 250
+N I+ + + L N+ L+++ + + ++ LK L L++ N
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 251 LEELPKEI-GNCTMLVTLDLQHNEL---VNIPDMLGNLIN--LTRLRLSYNRLESV-PET 303
+ + + L L L ++ + +L + L L L+ N++ + +
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400
Query: 304 LSKCVHLNEFNVEGCALS-SLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSIN 362
S HL ++ + L L +I I LS NK+ S+ +
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 363 FEHNQIDKIPY--GIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLS 419
+ + F +NL+ +++ +N + ++ D L L L+L N +++L
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520
Query: 420 ED---------IQNLVNLEVLVLSNNLLKKL-PSSIGNLRKLKCLDLEENKLESLPNEI- 468
+ ++ L +L +L L +N ++ +L +LK +DL N L +LP +
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580
Query: 469 GFLKELQRLILQSNQLVSLPRAI--GHLTNLSYLSVGENNLQSIPEEIGTL 517
L+ L LQ N + S+ + + NL+ L + N E I
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631
Score = 193 bits (493), Expect = 6e-54
Identities = 90/420 (21%), Positives = 166/420 (39%), Gaps = 33/420 (7%)
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSMLSMRDNKIR 229
V D H KL ++P + T++ +L L N+++ + + S L+ L + N I
Sbjct: 5 SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 230 ELPPE-LGELKNLVTLDLAHNHLEELPKE-IGNCTMLVTLDLQHNELVNI-PDMLGNLIN 286
+L PE +L L L+L HN L +L + CT L L L N + I + N
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 287 LTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSLPDGLLSSL--TSINNITLSRNK 343
L L LS+N L S T + +L E + + +L L +S+ + LS N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 344 FTAYPSGGPTQFTSVYSINFEHNQIDK-IPYGIFSRA--KNLSKVNMKDNLLTSLP---L 397
+ G ++ + + Q+ + + ++ +++ ++ L++
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242
Query: 398 DLGTWVGLTELNLGTNQISKLSED-IQNLVNLEVLVLSNNLLKKL-PSSIGNLRKLKCLD 455
W LT L+L N ++ + D L LE L N ++ L S+ L ++ L+
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302
Query: 456 LEENKLESL----------PNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGE 504
L+ + + +LK L+ L ++ N + + L NL YLS+
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
Query: 505 NNLQSIPEEIGTLEN-----LHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPS 559
+ T + LH L L N + +L+++ L + Q +
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Score = 169 bits (431), Expect = 2e-45
Identities = 72/353 (20%), Positives = 138/353 (39%), Gaps = 26/353 (7%)
Query: 240 NLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLE 298
+ D +H L ++P ++ T + L+L HN+L + LT L + +N +
Sbjct: 5 SHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 299 SV-PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTS 357
+ PE K L N++ LS L D + T++ + L N + + +
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 358 VYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVG---LTELNLGTNQ 414
+ +++ HN + G + +NL ++ + +N + +L + L +L L +NQ
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 415 ISKLS-EDIQNLVNLEVLVLSNNLLKK-LPSSIG---NLRKLKCLDLEENKLESLPNEIG 469
I + S + L L L+N L L + ++ L L ++L + N
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242
Query: 470 F---LKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNLQSI-PEEIGTLENLHTLY 524
L L L N L + + L L Y + NN+Q + + L N+ L
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302
Query: 525 LNDNTCLNNI---------PFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
L + +I F L+ +++++ + I S + G +L
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355
Score = 160 bits (406), Expect = 4e-42
Identities = 79/361 (21%), Positives = 144/361 (39%), Gaps = 34/361 (9%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
+ +S +S+ + + L LE L + N + + S + + NL L L+ +
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 160 TSL---PDSLANLQQ--LRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPD-- 211
+ ++ +L L +L+L NK++++ L L++L L N I
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 212 IQYLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEEL---PKEIGNCTMLVTL 267
+ L N+ + + NK +L + +L L L L+ + P L L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 268 DLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDG 326
DL +N + NI DML L L L L +N L + + A P
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH---------------ANPGGPIY 530
Query: 327 LLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVN 386
L L+ ++ + L N F P + I+ N ++ +P +F+ +L +N
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590
Query: 387 MKDNLLTSLPLDL--GTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSS 444
++ NL+TS+ + + LTEL++ N E I VN + ++ + +L S
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW--INETHTNIPELSSH 648
Query: 445 I 445
Sbjct: 649 Y 649
Score = 133 bits (336), Expect = 5e-33
Identities = 66/310 (21%), Positives = 114/310 (36%), Gaps = 35/310 (11%)
Query: 285 INLTRLRLSYNRLESVP----------------------ETLSKCVHLNEFNVEGCALSS 322
++ S+ +L VP ++ L +V +S
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 323 LPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNL 382
L L L + + L N+ + T++ ++ N I KI F + KNL
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 383 SKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSED---IQNLVNLEVLVLSNNLL 438
+++ N L+S L L EL L N+I L + I +L+ L LS+N +
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 439 KKL-PSSIGNLRKLKCLDLEENKL-ESLPNEIGF---LKELQRLILQSNQLVSLPRAIG- 492
K+ P + +L L L +L SL ++ ++ L L ++QL +
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243
Query: 493 --HLTNLSYLSVGENNLQSI-PEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSL 549
TNL+ L + NNL + + L L +L N + L N++ ++L
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Query: 550 DNCPLSQIPS 559
Q S
Sbjct: 304 KRSFTKQSIS 313
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 244 bits (626), Expect = 6e-72
Identities = 121/500 (24%), Positives = 218/500 (43%), Gaps = 46/500 (9%)
Query: 97 RCKEENILNLDLSKSSIT----HLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCL 152
C+++ + ++DLS + + S+ LT LE L+L + + S +LT L
Sbjct: 46 TCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL 105
Query: 153 GLAENSLT-SLPD--SLANLQQLRVLDLRHNKLN---ELPMVVYKLTSLKILYLRFNRIK 206
L+ NSL+ + SL + L+ L++ N L+ ++ + KL SL++L L N I
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSIS 164
Query: 207 TVHPD----IQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-ELPKEIGN 260
+ L L++ NKI ++ + NL LD++ N+ +P +G+
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGD 221
Query: 261 CTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLE-SVPETLSKCVHLNEFNVEGC 318
C+ L LD+ N+L + + L L +S N+ +P L ++
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAEN 279
Query: 319 ALS-SLPDGLLSSLTSINNITLSRNKFTAYPSGGP-----TQFTSVYSINFEHNQI-DKI 371
+ +PD L + ++ + LS N F G + + S+ N ++
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFY-----GAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 372 PYGIFSRAKNLSKVNMKDNLLT-SLPLDLG-TWVGLTELNLGTNQIS-KLSEDIQN--LV 426
P + + L +++ N + LP L L L+L +N S + ++
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 427 NLEVLVLSNNLLK-KLPSSIGNLRKLKCLDLEENKLE-SLPNEIGFLKELQRLILQSNQL 484
L+ L L NN K+P ++ N +L L L N L ++P+ +G L +L+ L L N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 485 V-SLPRAIGHLTNLSYLSVGENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCS 542
+P+ + ++ L L + N+L IP + NL+ + L++N IP +
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 543 NLQIMSLDNCPLS-QIPSEI 561
NL I+ L N S IP+E+
Sbjct: 515 NLAILKLSNNSFSGNIPAEL 534
Score = 222 bits (569), Expect = 5e-64
Identities = 118/485 (24%), Positives = 188/485 (38%), Gaps = 58/485 (11%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLA-SLPSQIGYVTNLTCLGLAENSLT 160
N+ LD+S ++ + P + + L+ L + GNKL+ I T L L ++ N
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 161 -SLPDSLANLQQLRVLDLRHNKLN-ELPM-VVYKLTSLKILYLRFNRIK-TVHPDIQYLS 216
+P L+ L+ L L NK E+P + +L L L N V P S
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 217 NLSMLSMRDNKIR-ELPPE-LGELKNLVTLDLAHNHLE-ELPKEIGNCTM-LVTLDLQHN 272
L L++ N ELP + L +++ L LDL+ N ELP+ + N + L+TLDL N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 273 ELV-NIPDMLGN--LINLTRLRLSYNRLE-SVPETLSKCVHLNEFNVEGCALS-SLPDGL 327
I L L L L N +P TLS C L ++ LS ++P L
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 328 --LSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKV 385
LS L + L N +IP + K L +
Sbjct: 439 GSLSKLRDLK---LWLNMLEG-----------------------EIPQELMY-VKTLETL 471
Query: 386 NMKDNLLT-SLPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEVLVLSNNLLK-KLP 442
+ N LT +P L L ++L N+++ ++ + I L NL +L LSNN +P
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 443 SSIGNLRKLKCLDLEENKLE-SLPNEIGFLKELQRLILQSNQLV-SLPRAIGHLTNLSYL 500
+ +G+ R L LDL N ++P + Q + +N + I +
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMF----KQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 501 SVGENNLQ---SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS-Q 556
N L+ E++ L + + + ++ + + LS
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 557 IPSEI 561
IP EI
Sbjct: 648 IPKEI 652
Score = 215 bits (549), Expect = 3e-61
Identities = 123/434 (28%), Positives = 186/434 (42%), Gaps = 29/434 (6%)
Query: 102 NILNLDLSKSSIT-HLPPSVEKLTHLEELYLYGNKLA-SLP-SQIGYVTNLTCLGLAENS 158
+ LDLS + +PP + LE L L N + LP + + L L L+ N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 159 LT-SLPDSLANL-QQLRVLDLRHNKLN-ELP--MVVYKLTSLKILYLRFNRIK-TVHPDI 212
+ LP+SL NL L LDL N + + + +L+ LYL+ N + P +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 213 QYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLDLQ 270
S L L + N + +P LG L L L L N LE E+P+E+ L TL L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 271 HNELV-NIPDMLGNLINLTRLRLSYNRLE-SVPETLSKCVHLNEFNVEGCALS-SLPDGL 327
N+L IP L N NL + LS NRL +P+ + + +L + + S ++P L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 328 LSSLTSINNITLSRNKFTAYPSGG-PTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVN 386
S+ + L+ N F +G P S N I Y + +
Sbjct: 535 -GDCRSLIWLDLNTNLF----NGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 387 MKDNLLT---SLPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEVLVLSNNLLK-KL 441
NLL L N+ + S N ++ L +S N+L +
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 442 PSSIGNLRKLKCLDLEENKLE-SLPNEIGFLKELQRLILQSNQLV-SLPRAIGHLTNLSY 499
P IG++ L L+L N + S+P+E+G L+ L L L SN+L +P+A+ LT L+
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 500 LSVGENNLQ-SIPE 512
+ + NNL IPE
Sbjct: 709 IDLSNNNLSGPIPE 722
Score = 210 bits (538), Expect = 1e-59
Identities = 126/483 (26%), Positives = 200/483 (41%), Gaps = 53/483 (10%)
Query: 102 NILNLDLSKSSIT-HLPPSVEKLTHLEELYLYGNKLA-SLPSQI-GYVTNLTCLGLAENS 158
+ L++S + +PP L L+ L L NK +P + G LT L L+ N
Sbjct: 248 ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 159 LT-SLPDSLANLQQLRVLDLRHNKLN-ELPM-VVYKLTSLKILYLRFNRIK-TVHPDIQY 214
++P + L L L N + ELPM + K+ LK+L L FN + +
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Query: 215 LS-NLSMLSMRDNKIR-ELPPELGE--LKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLDL 269
LS +L L + N + P L + L L L +N ++P + NC+ LV+L L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 270 QHNELV-NIPDMLGNLINLTRLRLSYNRLE-SVPETLSKCVHLNEFNVEGCALS-SLPDG 326
N L IP LG+L L L+L N LE +P+ L L ++ L+ +P G
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 327 LLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVN 386
L S+ T++N I+LS N+ T +IP I R +NL+ +
Sbjct: 486 L-SNCTNLNWISLSNNRLT-----------------------GEIPKWI-GRLENLAILK 520
Query: 387 MKDNLLT-SLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSS 444
+ +N + ++P +LG L L+L TN + I + + +N + K
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTN---LFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 445 IGNLRKLKCLDLEENKLE---SLPNEIGFLKELQRLILQSNQLV-SLPRAIGHLTNLSYL 500
I N K N LE ++ L + S + ++ +L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 501 SVGENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS-QIP 558
+ N L IP+EIG++ L L L N +IP E+ L I+ L + L +IP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 559 SEI 561
+
Sbjct: 698 QAM 700
Score = 135 bits (341), Expect = 2e-33
Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 31/249 (12%)
Query: 98 CKEENILNLDLSKSSIT-HLPPSVEKLTHLEELYLYGNKLA-SLPSQIGYVTNLTCLGLA 155
+ + L L + +T +P + T+L + L N+L +P IG + NL L L+
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 156 ENSLT-SLPDSLANLQQLRVLDLRHNKLN---------------------ELPMVVYKLT 193
NS + ++P L + + L LDL N N + + +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582
Query: 194 SLKILYLRFNRIK---TVHPDIQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHN 249
K + N ++ + LS + ++ P +++ LD+++N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 250 HLE-ELPKEIGNCTMLVTLDLQHNELV-NIPDMLGNLINLTRLRLSYNRLE-SVPETLSK 306
L +PKEIG+ L L+L HN++ +IPD +G+L L L LS N+L+ +P+ +S
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 307 CVHLNEFNV 315
L E ++
Sbjct: 703 LTMLTEIDL 711
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 227 bits (582), Expect = 2e-68
Identities = 95/446 (21%), Positives = 184/446 (41%), Gaps = 22/446 (4%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ L K+++T L + L + S+ + Y+ NLT + + N LT
Sbjct: 24 AEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLT 81
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
+ L NL +L + + +N++ ++ + LT+L L L N+I + ++ L+NL+
Sbjct: 82 DIT-PLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDI-DPLKNLTNLNR 138
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
L + N I ++ L L +L L + + P + N T L LD+ N++ +I
Sbjct: 139 LELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV- 194
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340
L L NL L + N++ + L +L+E ++ G L + L+SLT++ ++ L+
Sbjct: 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLA 251
Query: 341 RNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLG 400
N+ + + T + + NQI I + L+ + + +N L + +
Sbjct: 252 NNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-PIS 306
Query: 401 TWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENK 460
LT L L N IS +S + +L L+ L NN + + S+ NL + L N+
Sbjct: 307 NLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQ 364
Query: 461 LESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENL 520
+ L + L + +L L + P ++ P I +
Sbjct: 365 ISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSY 423
Query: 521 HTLYLNDN--TCLNNIPFELALCSNL 544
+ N + N + + + +
Sbjct: 424 TEPDITWNLPSYTNEVSYTFSQPVTI 449
Score = 145 bits (368), Expect = 5e-38
Identities = 76/315 (24%), Positives = 134/315 (42%), Gaps = 14/315 (4%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS 161
++ L + +T L P + LT LE L + NK++ + + +TNL L N ++
Sbjct: 157 SLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISD 213
Query: 162 LPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSML 221
+ L L L L L N+L ++ + LT+L L L N+I + + L+ L+ L
Sbjct: 214 IT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL-APLSGLTKLTEL 270
Query: 222 SMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDML 281
+ N+I + P L L L L+L N LE++ I N L L L N + +I +
Sbjct: 271 KLGANQISNISP-LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP-V 327
Query: 282 GNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSR 341
+L L RL N++ V L+ ++N + +S L L++LT I + L+
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384
Query: 342 NKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGT 401
+T P + ++ + I S + ++ ++ NL + T
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYTNEVSYT 442
Query: 402 WVGLTELNLGTNQIS 416
+ + GT S
Sbjct: 443 FSQPVTIGKGTTTFS 457
Score = 131 bits (331), Expect = 4e-33
Identities = 67/296 (22%), Positives = 121/296 (40%), Gaps = 16/296 (5%)
Query: 264 LVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSL 323
L + + + +N L + L + + + + + + S+
Sbjct: 3 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI 61
Query: 324 PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
+ L ++ I S N+ T T + I +NQI I + NL+
Sbjct: 62 DG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115
Query: 384 KVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPS 443
+ + +N +T + L L L L +N IS +S + L +L+ L N +
Sbjct: 116 GLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTD--LK 171
Query: 444 SIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVG 503
+ NL L+ LD+ NK+ + + L L+ LI +NQ+ + +G LTNL LS+
Sbjct: 172 PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDIT-PLGILTNLDELSLN 229
Query: 504 ENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPS 559
N L+ I + +L NL L L +N ++N+ L+ + L + L +S I
Sbjct: 230 GNQLKDIG-TLASLTNLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGANQISNISP 282
Score = 34.2 bits (79), Expect = 0.12
Identities = 10/83 (12%), Positives = 23/83 (27%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
I L L+ + T+ P + + + P+ I + T + N +
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434
Query: 161 SLPDSLANLQQLRVLDLRHNKLN 183
+ Q + +
Sbjct: 435 YTNEVSYTFSQPVTIGKGTTTFS 457
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 228 bits (582), Expect = 1e-67
Identities = 95/491 (19%), Positives = 191/491 (38%), Gaps = 44/491 (8%)
Query: 101 ENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENS 158
+ +LDLS + IT++ +L+ L L +++ ++ + +L L L++N
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 159 LTSLPDS-LANLQQLRVLDLRHNKLNELPM--VVYKLTSLKILYL-RFNRIKTVHP-DIQ 213
L+SL S L L+ L+L N L + + LT+L+ L + + D
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 214 YLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNC-TMLVTLDLQH 271
L++L+ L ++ +R + L ++++ L L + L + + + + L+L+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 272 NELVNIP---------DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSS 322
L + L+ + + L + L+E + C L+
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 323 LPDGLLSSLTSINNIT-----------LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI 371
L D S ++ + + + S + V I E++++ +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325
Query: 372 PYGIFSRAKNLSKVNMKDNLLTSLPLD----LGTWVGLTELNLGTNQISKLSED---IQN 424
P K+L +++ +NL+ L G W L L L N + + + +
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385
Query: 425 LVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQL 484
L NL L +S N +P S K++ L+L + + I + L+ L + +N L
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNL 443
Query: 485 VSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFE-LALCSN 543
S L L L + N L+++P+ L + ++ N L ++P ++
Sbjct: 444 DSFSL---FLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQ-LKSVPDGIFDRLTS 498
Query: 544 LQIMSLDNCPL 554
LQ + L P
Sbjct: 499 LQKIWLHTNPW 509
Score = 191 bits (487), Expect = 5e-54
Identities = 92/449 (20%), Positives = 160/449 (35%), Gaps = 41/449 (9%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLP--SQIGYVTNLTCLGLA-ENSLTS 161
LDLS + ++ L S L+ L+ L L GN +L S +TNL L + + +
Sbjct: 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138
Query: 162 LP-DSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPDI-QYLSNL 218
+ A L L L+++ L + + + L L + + LS++
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198
Query: 219 SMLSMRDNKIRELPP------------ELGELKNLVTLDLAHNHLEELPKEIGNCTMLVT 266
L +RD + + + V D + N L +L + I + +
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258
Query: 267 LDLQHNELVNIPDMLGN---------LINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVE 316
D N L + + + + RL + L S + VE
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318
Query: 317 GCALSSLPDGLLSSLTSINNITLSRNKFT---AYPSGGPTQFTSVYSINFEHNQIDKIP- 372
+ +P L S+ + LS N S + S+ ++ N + +
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378
Query: 373 -YGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVL 431
I KNL+ +++ N +P + LNL + I + I LEVL
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVL 436
Query: 432 VLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR-A 490
+SNN L + L++L + NKL++LP + L + + NQL S+P
Sbjct: 437 DVSNNNLDSFSLFLPRLQEL---YISRNKLKTLP-DASLFPVLLVMKISRNQLKSVPDGI 492
Query: 491 IGHLTNLSYLSVGENNLQSIPEEIGTLEN 519
LT+L + + N I L
Sbjct: 493 FDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521
Score = 181 bits (462), Expect = 2e-50
Identities = 82/427 (19%), Positives = 163/427 (38%), Gaps = 39/427 (9%)
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSMLSMRDNKIR 229
V D R +P + ++K L L FN+I + D++ +NL +L ++ ++I
Sbjct: 6 ASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63
Query: 230 ELPPE-LGELKNLVTLDLAHNHLEELPKE-IGNCTMLVTLDLQHNELVNIPD--MLGNLI 285
+ + L +L LDL+ NHL L G + L L+L N + + NL
Sbjct: 64 TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123
Query: 286 NLTRLRLS-YNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNK 343
NL LR+ + + LNE ++ +L + L S+ I+++TL ++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183
Query: 344 FTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNL-----------L 392
+SV + + + + + S + L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Query: 393 TSLPLDLGTWVGLTELNLGTNQISKLSEDIQN---------LVNLEVLVLSNNLLKKLPS 443
L + + + N + + + V + L + L S
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303
Query: 444 SI-GNLRKLKCLDLEENKLESLPNEIG-FLKELQRLILQSNQLVSL----PRAIGHLTNL 497
++ L K+K + +E +K+ +P LK L+ L L N +V G +L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363
Query: 498 SYLSVGENNLQSIPEEIGT---LENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPL 554
L + +N+L+S+ + L+NL +L ++ NT + +P ++ ++L + +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGI 422
Query: 555 SQIPSEI 561
+ + I
Sbjct: 423 RVVKTCI 429
Score = 149 bits (379), Expect = 4e-39
Identities = 78/406 (19%), Positives = 143/406 (35%), Gaps = 42/406 (10%)
Query: 102 NILNLDLSKS-SITHLPPSV-EKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENS 158
N+ L + + + + LT L EL + L + SQ + + ++ L L +
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183
Query: 159 LTSLPD-SLANLQQLRVLDLRHNKLNELPM----VVYKLTSLKILYLR--------FNRI 205
L + L +R L+LR L V + +K L R FN +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Query: 206 KTVHPDIQYLSNLSMLSMRDNKIRELPPELG---------ELKNLVTLDLAHNHLEELPK 256
+ I LS + N + + P E + L + +L
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303
Query: 257 EI-GNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESV----PETLSKCVHL 310
+ + + ++++++ +P +L +L L LS N + L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363
Query: 311 NEFNVEGCALSSLPD--GLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQI 368
+ L S+ +L +L ++ ++ +SRN F P + +N I
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGI 422
Query: 369 DKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNL 428
+ I L +++ +N L S L L L EL + N++ L + L
Sbjct: 423 RVVKTCIPQ---TLEVLDVSNNNLDSFSLFL---PRLQELYISRNKLKTLPDAS-LFPVL 475
Query: 429 EVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGFLKE 473
V+ +S N LK +P I L L+ + L N + I +L
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521
Score = 104 bits (260), Expect = 1e-23
Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 11/220 (5%)
Query: 357 SVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL-DLGTWVGLTELNLGTNQI 415
+ + IP G+ + K+L ++ N +T + DL L L L +++I
Sbjct: 6 ASGVCDGRSRSFTSIPSGLTAAMKSL---DLSFNKITYIGHGDLRACANLQVLILKSSRI 62
Query: 416 SKLSEDI-QNLVNLEVLVLSNNLLKKLPSS-IGNLRKLKCLDLEENKLESLPNEIGF--L 471
+ + D +L +LE L LS+N L L SS G L LK L+L N ++L F L
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 472 KELQRLILQSNQLVSL--PRAIGHLTNLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDN 528
LQ L + + + S LT+L+ L + +L++ + + ++ ++H L L+ +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182
Query: 529 TCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
+ + S+++ + L + L++ +
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222
Score = 56.3 bits (136), Expect = 2e-08
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 90 NIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNL 149
+ C + + LD+S +++ L L+ELY+ NKL +LP L
Sbjct: 420 TGIRVVKTCIPQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLPD-ASLFPVL 475
Query: 150 TCLGLAENSLTSLPDS-LANLQQLRVLDLRHNKLN 183
+ ++ N L S+PD L L+ + L N +
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 220 bits (562), Expect = 4e-64
Identities = 96/497 (19%), Positives = 177/497 (35%), Gaps = 30/497 (6%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAE 156
KE N + + +P ++ E L N L ++ + + NLT L L
Sbjct: 10 EKEVNKT-YNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR 66
Query: 157 NSLTSL-PDSLANLQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFNRIKTVHPD-IQ 213
+ + D+ + +L L L N L + + +LK L+ I ++ +
Sbjct: 67 CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126
Query: 214 YLSNLSMLSMRDNKIRELP-PELGELKNLVTLDLAHNHLEELPKE-IGNCTML--VTLDL 269
L L + N I + P+ + L LD +N + L KE + + ++L+L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 270 QHNELVNIPDMLGNLINLTRLRLSYNRLESVPE---TLSKCVHLNEFNVEGCALSSLPDG 326
N++ I + L + V S L E +
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 327 LLSSLTSINNITL--SRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSK 384
+ L ++ ++ ++ F S F+ + ++ + ++P G L K
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKK 305
Query: 385 VNMKDNLLTSLP-LDLGTWVGLTELNLGTNQISKL--SEDIQNLVNLEVLVLSNNLLKKL 441
+ + N +L + + LT L++ N + ++NL NL L LS++ ++
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 442 PS---SIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPR--AIGHLT 495
+ NL L+ L+L N+ SL E +L+ L L +L +L
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 496 NLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN---TCLNNIPFELALCSNLQIMSLDN 551
L L++ + L E++ L L L L N L L+I+ L
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 552 CPLSQIPSEIVVGGPSL 568
C LS I +
Sbjct: 486 CDLSSIDQHAFTSLKMM 502
Score = 219 bits (559), Expect = 1e-63
Identities = 95/525 (18%), Positives = 186/525 (35%), Gaps = 75/525 (14%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
N+ LDL++ I + + L+ L L N L + L L + +
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117
Query: 160 TSLPD-SLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHP-DIQYLS 216
+S+ L N + L L L N ++ + + + LK+L + N I + D+ L
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177
Query: 217 NLSM--LSMRDNKIRELPPELGELKNLVTLDLAHNH-LEELPKEIGNCTM---------- 263
+ L++ N I + P + +L+ L + K + N T+
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237
Query: 264 ------------------LVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESVPETL 304
+ +++LQ + NI + L L L+ L +P L
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL 297
Query: 305 SKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFE 364
L + + +L S+ S+ ++++ N
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN---------------------- 335
Query: 365 HNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLT---ELNLGTNQISKLSED 421
+ ++ G +NL ++++ + + + L+ LNL N+ L +
Sbjct: 336 -TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 422 I-QNLVNLEVLVLSNNLLKKL--PSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRL 477
+ LE+L L+ LK S NL LK L+L + L+ ++ L LQ L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Query: 478 ILQSNQLVSL----PRAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLN 532
LQ N ++ L L L + +L SI + +L+ ++ + L+ N L
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLT 513
Query: 533 NIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYLKMQG 577
+ E ++L + +S I ++ R + ++
Sbjct: 514 SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQ--RTINLRQ 556
Score = 215 bits (549), Expect = 2e-62
Identities = 91/479 (18%), Positives = 178/479 (37%), Gaps = 25/479 (5%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSL 159
+ L L+ + + + + L+ L+ ++S+ + L L L N +
Sbjct: 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141
Query: 160 TSLPD-SLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLR--FNRIKTVHPDIQYL 215
+S+ ++L+VLD ++N ++ L + L L L N I + P
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Query: 216 SNLSMLSMRDNKIRELPPE---LGELKNLVTLDLAHNHLEELPKEI--GNCTM-LVTLDL 269
+ L+ + + + +++L E++ + G C M + +++L
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261
Query: 270 QHNELVNI-PDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLL 328
Q + NI + L L L+ L +P L L + + +L
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321
Query: 329 SSLTSINNITLSRNKF-TAYPSGGPTQFTSVYSINFEHNQIDKIPY--GIFSRAKNLSKV 385
S+ S+ ++++ N +G ++ ++ H+ I+ +L +
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381
Query: 386 NMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSED--IQNLVNLEVLVLSNNLLKKLP 442
N+ N SL + L L+L ++ QNL L+VL LS++LL
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441
Query: 443 -SSIGNLRKLKCLDLEENKLESL----PNEIGFLKELQRLILQSNQLVSLP-RAIGHLTN 496
L L+ L+L+ N N + L L+ L+L L S+ A L
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501
Query: 497 LSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS 555
++++ + N L S E + L L N +P L + S + ++L PL
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 184 bits (468), Expect = 6e-51
Identities = 81/454 (17%), Positives = 147/454 (32%), Gaps = 50/454 (11%)
Query: 101 ENILNLDLSKSSITHLPPSV-EKLTHLEELYLY--GNKLASLPSQIGYVTNLTCLGLAEN 157
E + LD ++I +L L L L GN +A + L
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Query: 158 SLTSLPD---SLANLQQLRVLDLRHNKLNELP---MVVYKLTSLKILYLRFNRIKTVHPD 211
+ + +Q L + ++ S++ + L+ + + +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 212 I-QYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKE-IGNCTMLVTLDL 269
S L L + + ELP L L L L L+ N E L + N L L +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 270 QHNELVN--IPDMLGNLINLTRLRLSYNRLESVP---ETLSKCVHLNEFNVEGCALSSLP 324
+ N L NL NL L LS++ +E+ L HL N+ SL
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 325 DGLLSSLTSINNITLSRNKFTAYPSGGP-TQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
+ + L+ + + P + +N H+ +D +F L
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452
Query: 384 KVNMKDNLLTSLPLD----LGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLL 438
+N++ N + L T L L L +S + + +L + + LS+N L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Query: 439 KKL------------------------PSSIGNLRKLKCLDLEENKLESLPNEIGFLKEL 474
PS + L + + ++L +N L+ + I F L
Sbjct: 513 TSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF---L 569
Query: 475 QRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNL 507
+ +L + + L + + + L
Sbjct: 570 EWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603
Score = 163 bits (414), Expect = 2e-43
Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 16/314 (5%)
Query: 95 FLRCKEENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLG 153
F E ++ +++L K ++ + + L+EL L L+ LPS + ++ L L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLV 307
Query: 154 LAENSLTSLPD-SLANLQQLRVLDLRHNKL--NELPMVVYKLTSLKILYLRFNRIKTVHP 210
L+ N +L S +N L L ++ N + L +L+ L L + I+T
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367
Query: 211 D---IQYLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKE--IGNCTML 264
++ LS+L L++ N+ L E E L LDLA L+ + N +L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427
Query: 265 VTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESV----PETLSKCVHLNEFNVEGCA 319
L+L H+ L + L L L L N +L L + C
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
LSS+ +SL +N++ LS N+ T+ + +Y +N N I I +
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPIL 546
Query: 380 KNLSKVNMKDNLLT 393
+N++ N L
Sbjct: 547 SQQRTINLRQNPLD 560
Score = 138 bits (351), Expect = 3e-35
Identities = 56/324 (17%), Positives = 118/324 (36%), Gaps = 17/324 (5%)
Query: 266 TLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSLP 324
T + ++ L IP L N + L S+N L ++ T S+ ++L ++ C + +
Sbjct: 16 TYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 325 DGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSK 384
+ S ++ + L+ N + ++ + F I I + K L
Sbjct: 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133
Query: 385 VNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLS-EDIQNLVNLEVLVL--SNNLLKK 440
+ + N ++S+ L L L+ N I LS ED+ +L L L + N +
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 441 LPSSIGNLRKLKCLDLEENK-LESLPNEIGF--LKELQRLILQSNQLVSLPRAI---GHL 494
+ + + L+ + L + + ++ L + + A+
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 495 TNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCP 553
++ +++ ++ +I L L L L+ +P L S L+ + L
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK 312
Query: 554 LSQIPSEIVVGGPSLIIRYLKMQG 577
+ PSL +L ++G
Sbjct: 313 FENLCQISASNFPSL--THLSIKG 334
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 216 bits (552), Expect = 9e-63
Identities = 105/495 (21%), Positives = 188/495 (37%), Gaps = 40/495 (8%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSLP 163
LDLS+ I + L HL L L GN + S +T+L L E L SL
Sbjct: 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120
Query: 164 -DSLANLQQLRVLDLRHNKLNE--LPMVVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLS 219
+ L L+ L++ HN ++ LP LT+L + L +N I+T+ D+Q+L
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180
Query: 220 M----LSMRDNKIRELPPELGELKNLVTLDLAHNHL--EELPKEIGNCTMLVTLDLQHNE 273
L M N I + + + L L L N + + N L L E
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240
Query: 274 LVNI-------PDMLGNLINLTR--LRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSL 323
+ P ++ L ++T RL+Y S +++ ++ G ++ L
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
Query: 324 PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
D + ++++ R + +P+ + S+ N+ +LS
Sbjct: 301 ED--VPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKGSISF--KKVALPSLS 353
Query: 384 KVNMKDNLLTSLPLDLGTWVG---LTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKK 440
+++ N L+ + +G L L+L N +S + L L+ L ++ LK+
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413
Query: 441 LP--SSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQL--VSLPRAIGHLT 495
+ S+ +L KL LD+ + + I L L L + N +L + T
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473
Query: 496 NLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCP 553
NL++L + + L+ I + TL L L ++ N L + +L +
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR 532
Query: 554 LSQIPSEIVVGGPSL 568
+ + SL
Sbjct: 533 IETSKGILQHFPKSL 547
Score = 213 bits (544), Expect = 1e-61
Identities = 97/500 (19%), Positives = 181/500 (36%), Gaps = 40/500 (8%)
Query: 101 ENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENS 158
+ N+DLS + + L + L+ L L ++ ++ + + +L+ L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 159 LTSL-PDSLANLQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFNRIKTVHPD--IQY 214
+ S P S + L L L KL L + +L +LK L + N I +
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 215 LSNLSMLSMRDNKIRELPPE----LGELK-NLVTLDLAHNHLEELPKEIGNCTMLVTLDL 269
L+NL + + N I+ + L E ++LD++ N ++ + + L L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211
Query: 270 QHNELVN--IPDMLGNLINLTRLRLSYNRL----------ESVPETLSKCVHLNEFNVEG 317
+ N + + L NL L RL S+ E L ++EF +
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTY 270
Query: 318 CALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
S L +++ ++L+ + S++ Q+ + P
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV--PKHFKWQSLSIIRCQLKQFP---TL 325
Query: 378 RAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI---QNLVNLEVLVLS 434
L + + N S+ L+ L+L N +S +L L LS
Sbjct: 326 DLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384
Query: 435 NNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPR-AI 491
N + ++ L +L+ LD + + L+ + F L++L L +
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444
Query: 492 GHLTNLSYLSVGENNLQSI--PEEIGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMS 548
LT+L+ L + N+ + NL L L+ L I + LQ+++
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLN 503
Query: 549 LDNCPLSQIPSEIVVGGPSL 568
+ + L + S SL
Sbjct: 504 MSHNNLLFLDSSHYNQLYSL 523
Score = 209 bits (534), Expect = 3e-60
Identities = 96/479 (20%), Positives = 176/479 (36%), Gaps = 33/479 (6%)
Query: 116 LPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRV 174
L P +E + ++ KL+ +P I ++ + L+ N L L S +N +L+
Sbjct: 4 LNPCIEVVPNIT-YQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQW 60
Query: 175 LDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELP 232
LDL ++ + + L L L L N I++ P L++L L + K+ L
Sbjct: 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120
Query: 233 PE-LGELKNLVTLDLAHNHLEE--LPKEIGNCTMLVTLDLQHNELVNIPD-MLGNLINLT 288
+G+L L L++AHN + LP N T LV +DL +N + I L L
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180
Query: 289 ----RLRLSYNRLESVPETLSKCVHLNEFNVEGCALSS-LPDGLLSSLTSINNITLSRNK 343
L +S N ++ + + + + L+E + G SS + L +L ++ L +
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240
Query: 344 FTAYPSG--------GPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL 395
F + ++ + F N+S +++ + L
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
Query: 396 PLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLD 455
D+ L++ Q+ + +L L+ L L+ N + L L LD
Sbjct: 301 E-DVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKG-SISFKKVALPSLSYLD 356
Query: 456 LEENKLESLPNEIGF---LKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPE 512
L N L L+ L L N + + L L +L + L+ + E
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416
Query: 513 E--IGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSL-DNCPLSQIPSEIVVGGPSL 568
+LE L L ++ + ++L + + N S + +L
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475
Score = 176 bits (448), Expect = 4e-48
Identities = 75/450 (16%), Positives = 136/450 (30%), Gaps = 53/450 (11%)
Query: 174 VLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHP-DIQYLSNLSMLSMRDNKIRELP 232
KL+++P + +S K + L FN +K + S L L + +I +
Sbjct: 15 TYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 233 PE-LGELKNLVTLDLAHNHLEELPKE-IGNCTMLVTLDLQHNELVNIP-DMLGNLINLTR 289
+ L +L L L N ++ T L L +L ++ +G LI L +
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 290 LRLSYNRLESV--PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINN----ITLSRNK 343
L +++N + S P S +L ++ + ++ L L + +S N
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192
Query: 344 FTAYPSGGPTQFTSVYSINFEHNQ-IDKIPYGIFSRAKNLSKVNMKDNLLTSLP----LD 398
Q ++ + N I L + +
Sbjct: 193 IDFIQD-QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251
Query: 399 LGTWVGLTELNLGTNQISKL------SEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLK 452
GL ++ + +++ L N+ + L+ +K L K +
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP-KHFKWQ 310
Query: 453 CLDLEENKLESLP--------------------NEIGFLKELQRLILQSNQLVSLPRAIG 492
L + +L+ P + L L L L N L
Sbjct: 311 SLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY 370
Query: 493 H---LTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELAL--CSNLQIM 547
+L +L + N + LE L L + L + A L +
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYL 429
Query: 548 SLDNCPLSQIPSEIVVGGPSLIIRYLKMQG 577
+ I +G SL LKM G
Sbjct: 430 DISYTNTKIDFDGIFLGLTSL--NTLKMAG 457
Score = 171 bits (435), Expect = 2e-46
Identities = 75/403 (18%), Positives = 140/403 (34%), Gaps = 24/403 (5%)
Query: 94 EFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLAS--LPSQIGYVTNLTC 151
+FLR + L+LD+S + I + + L EL L GN +S + + + + L
Sbjct: 174 QFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233
Query: 152 LGLAENSLTSL-------PDSLANLQQLRVLDLRHNKLNEL---PMVVYKLTSLKILYLR 201
L P + L + + + R N+ + + L ++ + L
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 202 FNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNC 261
IK + D+ LS+ ++++ P +L L +L L N +
Sbjct: 294 GVSIKYL-EDVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKGSISF-KKVAL 349
Query: 262 TMLVTLDLQHNELVNIPD---MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGC 318
L LDL N L +L L LS+N + L + +
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409
Query: 319 ALSSLPD-GLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQI-DKIPYGIF 376
L + + SL + + +S G TS+ ++ N D +F
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 377 SRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSED-IQNLVNLEVLVLS 434
+ NL+ +++ L + T L LN+ N + L L +L L S
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529
Query: 435 NNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGFLKELQR 476
N ++ + + L +L N + + FL+ ++
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572
Score = 130 bits (328), Expect = 4e-32
Identities = 56/328 (17%), Positives = 114/328 (34%), Gaps = 25/328 (7%)
Query: 252 EELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHL 310
L I +T +L +PD + + + + LS+N L+ + + S L
Sbjct: 2 GSLNPCIEVVP-NITYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSEL 58
Query: 311 NEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDK 370
++ C + ++ D L ++N+ L+ N ++ G + TS+ ++ ++
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLD--LGTWVGLTELNLGTNQISKLSEDI-----Q 423
+ + L K+N+ N + S L L ++L N I ++ + +
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
Query: 424 NLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQS 481
N L +S N + + KL L L N S + L L L
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238
Query: 482 NQLVSLPR----AIGHLTNLSYLSVGENNLQSI------PEEIGTLENLHTLYLNDNTCL 531
+ + L +++ E L + L N+ + L +
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SI 297
Query: 532 NNIPFELALCSNLQIMSLDNCPLSQIPS 559
+ ++ Q +S+ C L Q P+
Sbjct: 298 KYLE-DVPKHFKWQSLSIIRCQLKQFPT 324
Score = 119 bits (300), Expect = 1e-28
Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 8/214 (3%)
Query: 95 FLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ--IGYVTNLTCL 152
+ ++ +LDLS + + + L L+ L + L + + L L
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429
Query: 153 GLAENSLTSLPD-SLANLQQLRVLDLRHNKLNE--LPMVVYKLTSLKILYLRFNRIKTVH 209
++ + D L L L + N + L V T+L L L +++ +
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489
Query: 210 PDI-QYLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVT 266
+ L L +L+M N + L +L +L TLD + N +E + L
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549
Query: 267 LDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV 300
+L +N + I + L + + +E +
Sbjct: 550 FNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQM 583
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 210 bits (536), Expect = 2e-62
Identities = 73/395 (18%), Positives = 165/395 (41%), Gaps = 19/395 (4%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYL-YGNKLASLPSQIGYVTNLTCLGLAENSLTSLP 163
N+ + + +++ ++++ + + + N + +++ LP
Sbjct: 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61
Query: 164 -DSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDI-QYLSNLSM 220
L + +Q+ +L+L ++ E+ + +++ LY+ FN I+ + P + Q + L++
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121
Query: 221 LSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIP 278
L + N + LP + L TL +++N+LE + + T L L L N L ++
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181
Query: 279 DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNIT 338
L + +L +SYN L ++ ++ + E + +++ + + LT +
Sbjct: 182 --LSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILK--- 232
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD 398
L N T + + + ++ +N+++KI Y F + + L ++ + +N L +L L
Sbjct: 233 LQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290
Query: 399 LGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEE 458
L L+L N + + + LE L L +N + L + LK L L
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348
Query: 459 NKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGH 493
N + F + + ++Q + + H
Sbjct: 349 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 383
Score = 172 bits (438), Expect = 2e-48
Identities = 64/357 (17%), Positives = 130/357 (36%), Gaps = 44/357 (12%)
Query: 215 LSNLSMLSMRDNKIRELPPELGE------LKNLVTLDLAHNHLEELPKEI-GNCTMLVTL 267
+ D I ++ L N + ++ + +LP + + + L
Sbjct: 15 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74
Query: 268 DLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPD 325
+L ++ I + +L + +N + +P L +E LSSLP
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134
Query: 326 GLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKV 385
G+ + + +++S N TS+ ++ N++ + + +L
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHA 191
Query: 386 NMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSI 445
N+ NLL++L + + + EL+ N I+ + + V L +L L +N L +
Sbjct: 192 NVSYNLLSTLAIPIA----VEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW-L 244
Query: 446 GNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGE 504
N L +DL N+LE + ++ L+RL + +N+LV+L + L L +
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 304
Query: 505 NNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEI 561
N+L + + L LYL+ N + +
Sbjct: 305 NHLLHVERNQPQFDRLENLYLDHN------------------------SIVTLKLST 337
Score = 127 bits (322), Expect = 2e-32
Identities = 55/276 (19%), Positives = 93/276 (33%), Gaps = 13/276 (4%)
Query: 296 RLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQF 355
+ + L + +++ +L + +T + P+ F
Sbjct: 9 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68
Query: 356 TSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTW-VGLTELNLGTNQ 414
V +N QI++I F+ A + K+ M N + LP + LT L L N
Sbjct: 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128
Query: 415 ISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGFLK 472
+S L I N L L +SNN L+++ L+ L L N+L + + +
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIP 186
Query: 473 ELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLN 532
L + N L +L + L N++ + L L L N L
Sbjct: 187 SLFHANVSYNLLSTLAI----PIAVEELDASHNSINVVRG--PVNVELTILKLQHNN-LT 239
Query: 533 NIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
+ L L + L L +I V L
Sbjct: 240 DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274
Score = 75.5 bits (186), Expect = 9e-15
Identities = 35/169 (20%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 408 LNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPN 466
+++ T + EDI L N +++ N+ ++KLP+++ + R+++ L+L + ++E +
Sbjct: 28 IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86
Query: 467 EI-GFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIPEEIGTLENLHTLY 524
+ +Q+L + N + LP + ++ L+ L + N+L S+P G N
Sbjct: 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNT---- 140
Query: 525 LNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYL 573
L +S+ N L +I + SL L
Sbjct: 141 -----------------PKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 213 bits (543), Expect = 8e-62
Identities = 108/501 (21%), Positives = 179/501 (35%), Gaps = 49/501 (9%)
Query: 101 ENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENS 158
+ NLDLS + + HL L+ L L ++ ++ +++L+ L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 159 LTSLP-DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPD--IQY 214
+ SL + + L L+ L L L L +LK L + N I++
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 215 LSNLSMLSMRDNKIRELPPE-LGELKNL----VTLDLAHNHLEELPKEIGNCTMLVTLDL 269
L+NL L + NKI+ + L L + ++LDL+ N + + L L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 270 QHNEL--VNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGL 327
++N + + L L RL + L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN-----------------LEKFDKSA 250
Query: 328 LSSLTSINNITLSRNKFTAYPSGGPTQF---TSVYSINFEHNQIDKIPYGIFSRA-KNLS 383
L L ++ Y F T+V S + I+++ ++ ++L
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310
Query: 384 KVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL-- 441
VN K +L L L L +N+ ++ +L +LE L LS N L
Sbjct: 311 LVNCKFGQFPTLKLK-----SLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGC 364
Query: 442 -PSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR--AIGHLTNLS 498
S LK LDL N + ++ + L++L+ L Q + L + L NL
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 499 YLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNI-PFELALCSNLQIMSLDNCPLSQ 556
YL + + + I L +L L + N+ N P NL + L C L Q
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 557 IPSEIVVGGPSLIIRYLKMQG 577
+ SL + L M
Sbjct: 485 LSPTAFNSLSSL--QVLNMAS 503
Score = 211 bits (538), Expect = 5e-61
Identities = 99/521 (19%), Positives = 180/521 (34%), Gaps = 55/521 (10%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAE 156
N + + + +P ++ + L L N L L S L L L+
Sbjct: 5 EVVPN-ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61
Query: 157 NSLTSLP-DSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPD-IQ 213
+ ++ + +L L L L N + L + L+SL+ L + ++ I
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121
Query: 214 YLSNLSMLSMRDNKIREL--PPELGELKNLVTLDLAHNHLEELPKEIGNC-----TMLVT 266
+L L L++ N I+ P L NL LDL+ N ++ + + ++
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 267 LDLQHNELVNIPDMLGNLINLTRLRLSYNRL--ESVPETLSKCVHLNEFNVEGCA----- 319
LDL N + I I L +L L N + + L +
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 320 -LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQF---TSVYSINFEHNQIDKIPYGI 375
L L L ++ Y F T+V S + I+++
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 376 FSR-------------------AKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQIS 416
++ K+L ++ N + ++ L L+L N +S
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLS 360
Query: 417 KL---SEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGF--L 471
S+ +L+ L LS N + + S+ L +L+ LD + + L+ + F L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 472 KELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSI--PEEIGTLENLHTLYLNDN 528
+ L L + L++L L + N+ Q P+ L NL L L+
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 529 TCLNNIPFE-LALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
L + S+LQ++++ + L +P I SL
Sbjct: 481 -QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Score = 174 bits (442), Expect = 1e-47
Identities = 97/439 (22%), Positives = 161/439 (36%), Gaps = 40/439 (9%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASL--PSQIGYVTNLTCLGLAENS 158
++ L ++++ L L L+EL + N + S P +TNL L L+ N
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 159 LTSLP-DSLANLQQLRV----LDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD-- 211
+ S+ L L Q+ + LDL N +N + +K L L LR N
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220
Query: 212 IQYLSNLSMLSMRDNKIRELP----PELGELKNLVTLDLAHNHLEELPKEI-------GN 260
IQ L+ L + + + R + L+ L L + L L +
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280
Query: 261 CTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAL 320
T + + L + + D N L L + P K L
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKG 337
Query: 321 SSLPDGL-LSSLTSINNITLSRNKFTAY--PSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+ + L SL ++ LSRN + S TS+ ++ N + + F
Sbjct: 338 GNAFSEVDLPSLEFLD---LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL 393
Query: 378 RAKNLSKVNMKDNLLTSLPLDLGTWVG---LTELNLGTNQISKLSEDI-QNLVNLEVLVL 433
+ L ++ + + L + + ++ L L++ I L +LEVL +
Sbjct: 394 GLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 434 SNNLLKK--LPSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPR- 489
+ N ++ LP LR L LDL + +LE L L LQ L + SNQL S+P
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 490 AIGHLTNLSYLSVGENNLQ 508
LT+L + + N
Sbjct: 513 IFDRLTSLQKIWLHTNPWD 531
Score = 152 bits (385), Expect = 9e-40
Identities = 83/401 (20%), Positives = 141/401 (35%), Gaps = 49/401 (12%)
Query: 94 EFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLAS--LPSQIGYVTNLTC 151
L L+LDLS + + + P K L +L L N + + + I + L
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229
Query: 152 LGLAENSLTSLP-------DSLANLQQLRVLDLRHNKL----NELPMVVYKLTSLKILYL 200
L + +L L L + + R L +++ + LT++ L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289
Query: 201 RFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260
I+ V D Y L + + K + P +LK+L L N E+ +
Sbjct: 290 VSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEV-D 345
Query: 261 CTMLVTLDLQHNELVNI---PDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEG 317
L LDL N L +L L LS+N + ++ L + +
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 318 CALSSLPD-GLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIF 376
L + + + SL ++ + +S H GIF
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDIS------------------------HTHTRVAFNGIF 441
Query: 377 SRAKNLSKVNMKDNLLTS--LPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVL 433
+ +L + M N LP LT L+L Q+ +LS +L +L+VL +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 434 SNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGFLKE 473
++N LK +P I L L+ + L N + I +L
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542
Score = 118 bits (297), Expect = 2e-28
Identities = 64/333 (19%), Positives = 116/333 (34%), Gaps = 25/333 (7%)
Query: 265 VTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPET-LSKCVHLNEFNVEGCALSSL 323
+T IPD L + L LS+N L + L ++ C + ++
Sbjct: 10 ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 324 PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
DG SL+ ++ + L+ N + G + +S+ + + + K L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 384 KVNMKDNLLTSLPLD--LGTWVGLTELNLGTNQISKLS-EDIQNLVNLEV----LVLSNN 436
++N+ NL+ S L L L+L +N+I + D++ L + + L LS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 437 LLKKLPSSIGNLRKLKCLDLEENKL--ESLPNEIGFLKELQRLILQSNQLVSLPR----A 490
+ + +L L L N + I L L+ L + +
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 491 IGHLTNLSYLSVGENNLQS-------IPEEIGTLENLHTLYLNDNTCLNNIPFELALCSN 543
L L L++ E L I + L N+ + L T + + + +
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVK-DFSYNFG 305
Query: 544 LQIMSLDNCPLSQIPSEIVVGGPSLIIRYLKMQ 576
Q + L NC Q P+ + L K
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 211 bits (539), Expect = 6e-61
Identities = 98/494 (19%), Positives = 170/494 (34%), Gaps = 36/494 (7%)
Query: 104 LNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSL 162
+ + + +P ++ + L L N L L L L L+ + ++
Sbjct: 10 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 163 -PDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPD-IQYLSNLS 219
+ +L L L L N + L L+SL+ L + ++ I +L L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 220 MLSMRDNKIR--ELPPELGELKNLVTLDLAHNHLEEL-PKEIGNCTML----VTLDLQHN 272
L++ N I+ +LP L NL LDL+ N ++ + ++ + ++LDL N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 273 ELVNIPDMLGNLINLTRLRLSYNRL--ESVPETLSKCVHLNEFNVEGCALSS------LP 324
+ I I L +L L N + + L + +
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 325 DGLLSSLTSINNITLSRNKFTAYPSGGPTQF---TSVYSINFEHNQIDKIPYGIFSRAKN 381
L L ++ Y F T+V S + I+++ FS
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFG 305
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL 441
+ + + P L L +N+ ++ +L +LE L LS N L
Sbjct: 306 WQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFK 362
Query: 442 ---PSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSL--PRAIGHLTN 496
S LK LDL N + ++ + L++L+ L Q + L + L N
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 497 LSYLSVGENNLQSI-PEEIGTLENLHTLYLNDNTCLNNI-PFELALCSNLQIMSLDNCPL 554
L YL + + + L +L L + N+ N P NL + L C L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 555 SQIPSEIVVGGPSL 568
Q+ SL
Sbjct: 483 EQLSPTAFNSLSSL 496
Score = 204 bits (520), Expect = 3e-58
Identities = 101/498 (20%), Positives = 186/498 (37%), Gaps = 37/498 (7%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSL 159
+ NLDLS + + HL L+ L L ++ ++ +++L+ L L N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 160 TSL-PDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPD--IQYL 215
SL + + L L+ L L L + L +LK L + N I++ L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 216 SNLSMLSMRDNKIRELPPE-LGELKNL----VTLDLAHNHLEELPKEIGNCTMLVTLDLQ 270
+NL L + NKI+ + L L + ++LDL+ N + + L L L+
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208
Query: 271 HNEL--VNIPDMLGNLINLTRLRLSYNRLESVPE----TLSKCVHLNEFNVEGCALSSL- 323
+N + + L L RL + S L +E L+ L
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 324 -----PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSR 378
L + LT++++ +L + + + + + P
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 379 AKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKL---SEDIQNLVNLEVLVLSN 435
K L+ + K S +DL + L L+L N +S S+ +L+ L LS
Sbjct: 327 LKRLTFTSNKGGNAFSE-VDLPS---LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 436 NLLKKLPSSIGNLRKLKCLDLEENKLESL--PNEIGFLKELQRLILQSNQLVSL-PRAIG 492
N + + S+ L +L+ LD + + L+ + + L+ L L +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 493 HLTNLSYLSVGENNLQS--IPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLD 550
L++L L + N+ Q +P+ L NL L L+ P S+LQ++++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 551 NCPLSQIPSEIVVGGPSL 568
+ + + SL
Sbjct: 503 HNNFFSLDTFPYKCLNSL 520
Score = 194 bits (495), Expect = 1e-54
Identities = 100/480 (20%), Positives = 174/480 (36%), Gaps = 47/480 (9%)
Query: 118 PSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSL-PDSLANLQQLRVLD 176
P VE + ++ +P + + L L+ N L L S + +L+VLD
Sbjct: 2 PCVEVVPNIT-YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58
Query: 177 LRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIRELPPE 234
L ++ + L+ L L L N I+++ LS+L L + + L
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 235 -LGELKNLVTLDLAHNHLE--ELPKEIGNCTMLVTLDLQHNELVNI-PDMLGNLINLT-- 288
+G LK L L++AHN ++ +LP+ N T L LDL N++ +I L L +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 289 --RLRLSYNRLESVPETLSKCVHLNEFNVEGCALS-SLPDGLLSSLTSINNITLSRNKFT 345
L LS N + + K + L++ + S ++ + L + L +F
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF- 237
Query: 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT----SLPLDLGT 401
++K NL+ + L +
Sbjct: 238 -----------------RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280
Query: 402 WVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKL 461
++ +L + I ++ +D + L L N + P+ L+ LK L NK
Sbjct: 281 LTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKG 337
Query: 462 ESLPNEIGFLKELQRLILQSNQLVSL---PRAIGHLTNLSYLSVGENNLQSIPEEIGTLE 518
+ +E+ L L+ L L N L ++ T+L YL + N + ++ LE
Sbjct: 338 GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396
Query: 519 NLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYLKMQG 577
L L + F NL + + + + I G SL LKM G
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--EVLKMAG 454
Score = 170 bits (433), Expect = 4e-46
Identities = 87/482 (18%), Positives = 179/482 (37%), Gaps = 41/482 (8%)
Query: 102 NILNLDLSKSSIT--HLPPSVEKLTHLEELYLYGNKLASL-PSQIGYVTNLTC----LGL 154
+ L+++ + I LP LT+LE L L NK+ S+ + + + + L L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 155 AENSLTSLPDSLANLQQLRVLDLRHNKLNE--LPMVVYKLTSLKILYLRFNRIKT----V 208
+ N + + +L L LR+N + + + L L++ L +
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 209 HPDIQYLSNLSMLSMRDNKIREL-------PPELGELKNLVTLDLAHNHLEELPKEIGNC 261
D L L L++ + ++ L L N+ + L +E + +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYN 303
Query: 262 TMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALS 321
L+L + + P L +L RL + N+ + + L ++ LS
Sbjct: 304 FGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLS 360
Query: 322 --SLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDK-IPYGIFSR 378
TS+ + LS N S + ++F+H+ + + + +F
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 379 AKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISK--LSEDIQNLVNLEVLVLSN 435
+NL +++ L L + N + L + L NL L LS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 436 NLLKKL-PSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSL-PRAIG 492
L++L P++ +L L+ L++ N SL L LQ L N +++ + +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
Query: 493 HL-TNLSYLSVGENNLQ---SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMS 548
H ++L++L++ +N+ + +++ L + P + + ++S
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK---QGMPVLS 596
Query: 549 LD 550
L+
Sbjct: 597 LN 598
Score = 163 bits (415), Expect = 1e-43
Identities = 78/416 (18%), Positives = 149/416 (35%), Gaps = 29/416 (6%)
Query: 95 FLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKL--ASLPSQIGYVTNLTCL 152
L L+LDLS + + + P K L +L L N + + I + L
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 153 GLAENSLTSL-------PDSLANLQQLRVLDLRHNKL----NELPMVVYKLTSLKILYLR 201
L + +L L L + + R L +++ + LT++ L
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 202 FNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNC 261
I+ V D Y L + + K + P LK+L L N E+ +
Sbjct: 291 SVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAFSEV-DL 346
Query: 262 TMLVTLDLQHNELV---NIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGC 318
L LDL N L +L L LS+N + ++ L + +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 319 ALSSL-PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQI-DKIPYGIF 376
L + + SL ++ + +S +G +S+ + N + IF
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 377 SRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSED-IQNLVNLEVLVLS 434
+ +NL+ +++ L L + L LN+ N L + L +L+VL S
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526
Query: 435 NNLLKKLPSSI--GNLRKLKCLDLEENKLE-SLPNE--IGFLKELQRLILQSNQLV 485
N + L L+L +N + ++ + ++K+ ++L+++ ++
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582
Score = 123 bits (311), Expect = 6e-30
Identities = 64/336 (19%), Positives = 118/336 (35%), Gaps = 25/336 (7%)
Query: 265 VTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESV-PETLSKCVHLNEFNVEGCALSSL 323
+T IPD L + L LS+N L + + L ++ C + ++
Sbjct: 10 ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 324 PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
DG SL+ ++ + L+ N + G + +S+ + + + K L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 384 KVNMKDNLLTSLPLD--LGTWVGLTELNLGTNQISKLS-EDIQNLVNLEV----LVLSNN 436
++N+ NL+ S L L L+L +N+I + D++ L + + L LS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 437 LLKKLPSSIGNLRKLKCLDLEENKL--ESLPNEIGFLKELQRLILQSNQLVSLPR----A 490
+ + +L L L N + I L L+ L + +
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 491 IGHLTNLSYLSVGENNLQS-------IPEEIGTLENLHTLYLNDNTCLNNIPFELALCSN 543
L L L++ E L I + L N+ + L T + + + +
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVK-DFSYNFG 305
Query: 544 LQIMSLDNCPLSQIPSEIVVGGPSLIIRYLKMQGPY 579
Q + L NC Q P+ + L K +
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 202 bits (517), Expect = 1e-60
Identities = 67/279 (24%), Positives = 112/279 (40%), Gaps = 16/279 (5%)
Query: 68 KHPESNKPKPTTKKKEPIQADLNIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLE 127
+ SN P+ T+ ++A + + L+L + P +L+HL+
Sbjct: 51 RQANSNNPQIETRTGRALKA---TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQ 107
Query: 128 ELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRH-NKLNELP 186
+ + L LP + L L LA N L +LP S+A+L +LR L +R +L ELP
Sbjct: 108 HMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167
Query: 187 ---------MVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGE 237
L +L+ L L + I+++ I L NL L +R++ + L P +
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227
Query: 238 LKNLVTLDLAH-NHLEELPKEIGNCTMLVTLDLQH-NELVNIPDMLGNLINLTRLRLSYN 295
L L LDL L P G L L L+ + L+ +P + L L +L L
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Query: 296 -RLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333
L +P +++ V + L + +
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326
Score = 199 bits (507), Expect = 5e-59
Identities = 73/360 (20%), Positives = 122/360 (33%), Gaps = 53/360 (14%)
Query: 189 VYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAH 248
+ + + LY + + + D+ LS D N
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDV--LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTG 65
Query: 249 NHLEELPKEIGNCTM--LVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSK 306
L+ + + T V L+L+ L PD L +L + + L +P+T+ +
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ 125
Query: 307 CVHLNEFNVEGCALSSLPD--GLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFE 364
L + L +LP L+ L ++ +
Sbjct: 126 FAGLETLTLARNPLRALPASIASLNRLRELS---IRAC---------------------- 160
Query: 365 HNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQN 424
++ ++P + S T + V L L L I L I N
Sbjct: 161 -PELTELPEPLAS---------------TDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204
Query: 425 LVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEE-NKLESLPNEIGFLKELQRLILQS-N 482
L NL+ L + N+ L L +I +L KL+ LDL L + P G L+RLIL+ +
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Query: 483 QLVSLPRAIGHLTNLSYLSVGEN-NLQSIPEEIGTLENLHTLYLNDN---TCLNNIPFEL 538
L++LP I LT L L + NL +P I L + + + + P
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
Score = 187 bits (478), Expect = 8e-55
Identities = 70/370 (18%), Positives = 114/370 (30%), Gaps = 66/370 (17%)
Query: 113 ITHLPPSVEKLTHLEELYLYG-NKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQ 171
+ + E LY G L + A+ + AN
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNN 57
Query: 172 LRVLDLRHNKLNELPMVVYKLTS--LKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIR 229
++ L ++ T L LR + LS+L +++ +
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117
Query: 230 ELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQH-NELVNIPDMLGN----- 283
ELP + + L TL LA N L LP I + L L ++ EL +P+ L +
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 284 ----LINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITL 339
L+NL LRL + + S+P +++ +L + LS+L + L + + L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDL 236
Query: 340 SRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL 399
L + P
Sbjct: 237 RGC-----------------------------------------------TALRNYPPIF 249
Query: 400 GTWVGLTELNL-GTNQISKLSEDIQNLVNLEVLVLSNNL-LKKLPSSIGNLRKLKCLDLE 457
G L L L + + L DI L LE L L + L +LPS I L + +
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309
Query: 458 ENKLESLPNE 467
+ L
Sbjct: 310 PHLQAQLDQH 319
Score = 172 bits (438), Expect = 4e-49
Identities = 65/353 (18%), Positives = 124/353 (35%), Gaps = 64/353 (18%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
NL S+ L P + L+ + Y + N +L + D
Sbjct: 16 NLYFQGST--ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD 73
Query: 165 SLANLQQ--LRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLS 222
L + Q L+LR L + P ++L+ L+ + + + + +Q + L L+
Sbjct: 74 LLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLT 133
Query: 223 MRDNKIRELPPELGELKNLVTLDLAH-NHLEELPKEIGNCTM---------LVTLDLQHN 272
+ N +R LP + L L L + L ELP+ + + L +L L+
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193
Query: 273 ELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLT 332
+ ++P + NL NL L++ + L ++ + L E ++ GC
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC-------------- 239
Query: 333 SINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD-NL 391
+ P L ++ +KD +
Sbjct: 240 ---------------------------------TALRNYPPIF-GGRAPLKRLILKDCSN 265
Query: 392 LTSLPLDLGTWVGLTELNLGTN-QISKLSEDIQNLVNLEVLVLSNNLLKKLPS 443
L +LPLD+ L +L+L +S+L I L ++++ +L +L
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318
Score = 157 bits (398), Expect = 2e-43
Identities = 56/301 (18%), Positives = 99/301 (32%), Gaps = 41/301 (13%)
Query: 274 LVNIPDMLGNLINLTRLRLS-YNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLT 332
+ + + L L + LS+ +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS-------AWRQA 53
Query: 333 SINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGI-FSRAKNLSKVNMKDNL 391
+ NN + + + + + ++
Sbjct: 54 NSNNPQIETRT---------------------GRALKATADLLEDATQPGRVALELRSVP 92
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKL 451
L P L + + + +L + +Q LE L L+ N L+ LP+SI +L +L
Sbjct: 93 LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 452 KCLDLEE-NKLESLPNEIG---------FLKELQRLILQSNQLVSLPRAIGHLTNLSYLS 501
+ L + +L LP + L LQ L L+ + SLP +I +L NL L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Query: 502 VGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNC-PLSQIPSE 560
+ + L ++ I L L L L T L N P + L+ + L +C L +P +
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 561 I 561
I
Sbjct: 273 I 273
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 200 bits (511), Expect = 2e-59
Identities = 84/381 (22%), Positives = 161/381 (42%), Gaps = 40/381 (10%)
Query: 149 LTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV 208
L + + A+L + L+ + ++ +L S+ L + ++ ++
Sbjct: 2 AATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVVTQ-EELESITKLVVAGEKVASI 59
Query: 209 HPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLD 268
I+YL+NL L++ N+I ++ P L L L L + N + ++ + N T L L
Sbjct: 60 -QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116
Query: 269 LQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLL 328
L + + +I L NL + L L N S LS LN V + + +
Sbjct: 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--I 173
Query: 329 SSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMK 388
++LT + +++L+ +NQI+ I + +L
Sbjct: 174 ANLTDLYSLSLN------------------------YNQIEDISP--LASLTSLHYFTAY 207
Query: 389 DNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNL 448
N +T + + L L +G N+I+ LS + NL L L + N + + + + +L
Sbjct: 208 VNQITDIT-PVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA-VKDL 264
Query: 449 RKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSL-PRAIGHLTNLSYLSVGENNL 507
KLK L++ N++ + + L +L L L +NQL + IG LTNL+ L + +N++
Sbjct: 265 TKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Query: 508 QSIPEEIGTLENLHTLYLNDN 528
I + +L + + +
Sbjct: 324 TDIRP-LASLSKMDSADFANQ 343
Score = 194 bits (496), Expect = 3e-57
Identities = 80/381 (20%), Positives = 158/381 (41%), Gaps = 40/381 (10%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
L + I + P L L + + + + ++T L +A + S+
Sbjct: 4 TLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQG 61
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMR 224
+ L L L+L N++ ++ + L L LY+ N+I + +Q L+NL L +
Sbjct: 62 -IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLN 118
Query: 225 DNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNL 284
++ I ++ P L L + +L+L NH + N T L L + +++ ++ + NL
Sbjct: 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANL 176
Query: 285 INLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKF 344
+L L L+YN++E + L+ L+ F ++ + ++++T +N++ + NK
Sbjct: 177 TDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233
Query: 345 TAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVG 404
T + L+ + + N ++ + +
Sbjct: 234 TDLSP--------------------------LANLSQLTWLEIGTNQISDIN-AVKDLTK 266
Query: 405 LTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL-PSSIGNLRKLKCLDLEENKLES 463
L LN+G+NQIS +S + NL L L L+NN L IG L L L L +N +
Sbjct: 267 LKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325
Query: 464 LPNEIGFLKELQRLILQSNQL 484
+ + L ++ + +
Sbjct: 326 IRP-LASLSKMDSADFANQVI 345
Score = 191 bits (488), Expect = 4e-56
Identities = 78/341 (22%), Positives = 158/341 (46%), Gaps = 16/341 (4%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ L K+S+T + E+L + +L + G K+AS+ I Y+TNL L L N +T
Sbjct: 22 AEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT 79
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
+ L+NL +L L + NK+ ++ + LT+L+ LYL + I + + L+ +
Sbjct: 80 DIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI-SPLANLTKMYS 136
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
L++ N L + L L + + ++++ I N T L +L L +N++ +I
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP- 194
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340
L +L +L N++ + ++ LN + ++ L L++L+ + + +
Sbjct: 195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251
Query: 341 RNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-L 399
N+ + T + +N NQI I + + L+ + + +N L + ++ +
Sbjct: 252 TNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVI 307
Query: 400 GTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKK 440
G LT L L N I+ + + +L ++ +N ++KK
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347
Score = 174 bits (444), Expect = 8e-50
Identities = 76/365 (20%), Positives = 147/365 (40%), Gaps = 38/365 (10%)
Query: 195 LKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254
L I + PD L+ ++ + ++ EL+++ L +A + +
Sbjct: 2 AATLATLPAPINQIFPDAD-LAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59
Query: 255 PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
I T L L+L N++ +I L NL+ LT L + N++ + L +L E
Sbjct: 60 Q-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELY 116
Query: 315 VEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYG 374
+ +S + L++LT + ++ L N + S
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP------------------------ 150
Query: 375 IFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLS 434
S L+ + + ++ + + + L L+L NQI +S + +L +L
Sbjct: 151 -LSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAY 207
Query: 435 NNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHL 494
N + + + N+ +L L + NK+ L + L +L L + +NQ+ + A+ L
Sbjct: 208 VNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDL 264
Query: 495 TNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPL 554
T L L+VG N + I + L L++L+LN+N N + +NL + L +
Sbjct: 265 TKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Query: 555 SQIPS 559
+ I
Sbjct: 324 TDIRP 328
Score = 93.0 bits (232), Expect = 1e-20
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 404 GLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLES 463
G L I+++ D +L VL + + + L + L + K+ S
Sbjct: 1 GAATLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVAS 58
Query: 464 LPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTL 523
+ I +L L+ L L NQ+ + + +L L+ L +G N + I + L NL L
Sbjct: 59 IQ-GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115
Query: 524 YLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEI 561
YLN++ +++I LA + + ++L S +
Sbjct: 116 YLNED-NISDIS-PLANLTKMYSLNLGANHNLSDLSPL 151
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 207 bits (529), Expect = 4e-58
Identities = 99/507 (19%), Positives = 179/507 (35%), Gaps = 55/507 (10%)
Query: 101 ENILNLDLSKSSIT-HLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAEN 157
E + L+L + L +L L L +K+ L + +L L L
Sbjct: 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107
Query: 158 SLTSL---PDSLANLQQLRVLDLRHNKLNELPM--VVYKLTSLKILYLRFNRIKTVHP-D 211
L+ NL+ L LDL N++ L + KL SLK + N+I V +
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167
Query: 212 IQYLS--NLSMLSMRDNKIRELPP-------ELGELKNLVTLDLAHNHLEELPK------ 256
++ L LS S+ N + L LD++ N
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227
Query: 257 -------EIGNCTMLVTLDLQHNELVNIP-DMLGNL--INLTRLRLSYNRLESV-PETLS 305
+ ++ + + + + L ++ L LS+ + S+
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287
Query: 306 KCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEH 365
L N+ ++ + D L ++ + LS N S V I+ +
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 366 NQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNL 425
N I I F + L ++++DN LT++ + ++ L N++ L +
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLP---KIN 400
Query: 426 VNLEVLVLSNNLLKKLP--SSIGNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQS 481
+ ++ LS N L+ L + + L+ L L +N+ S + L++L L
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 482 NQLVSL------PRAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNI 534
N L L++L L + N L S+P + L L L LN N L +
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVL 519
Query: 535 PFELALCSNLQIMSLDNCPLSQIPSEI 561
L +NL+I+ + L ++
Sbjct: 520 SHN-DLPANLEILDISRNQLLAPNPDV 545
Score = 200 bits (511), Expect = 1e-55
Identities = 101/508 (19%), Positives = 185/508 (36%), Gaps = 55/508 (10%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL-- 162
++T +P L E L L N + ++ + ++ L L L
Sbjct: 9 AFYRFCNLTQVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 163 PDSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPD---IQYLSNL 218
++ NL LR+LDL +K+ L L L L L F + + L L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 219 SMLSMRDNKIRELPPE--LGELKNLVTLDLAHNHLEELPKE-IGNCTM--LVTLDLQHNE 273
+ L + N+IR L G+L +L ++D + N + + + + L L N
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Query: 274 LVNIPDM-------LGNLINLTRLRLSYNRLESVPE-------------TLSKCVHLNEF 313
L + + + L L +S N +L H+
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 314 NVEGCALSSLPDGLLSSL--TSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI 371
+ + L +S+ ++ LS + S + +N +N+I+KI
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305
Query: 372 PYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSEDI-QNLVNLE 429
F NL +N+ NLL L + ++L N I+ + + + L L+
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365
Query: 430 VLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR 489
L L +N L ++I + + + L NKL +LP + L N+L +L
Sbjct: 366 TLDLRDNAL----TTIHFIPSIPDIFLSGNKLVTLPKINLT---ANLIHLSENRLENLDI 418
Query: 490 A--IGHLTNLSYLSVGENNLQSIPEE--IGTLENLHTLYLNDNTCLNNIPFELAL----- 540
+ + +L L + +N S + +L L+L +N EL
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478
Query: 541 CSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
S+LQ++ L++ L+ +P + +L
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTAL 506
Score = 187 bits (476), Expect = 6e-51
Identities = 95/468 (20%), Positives = 160/468 (34%), Gaps = 57/468 (12%)
Query: 106 LDLSKSSITHL---PPSVEKLTHLEELYLYGNKLASLPSQ--IGYVTNLTCLGLAENSLT 160
L L ++ L L L L N++ SL G + +L + + N +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
Query: 161 SLP-DSLANLQQ--LRVLDLRHNKLNELPMVV-------YKLTSLKILYLRFNRIKTVHP 210
+ L LQ L L N L V ++ L+IL + N
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221
Query: 211 D-------------IQYLSNLSMLSMRDNKIRELPPEL---GELKNLVTLDLAHNHLEEL 254
+ ++ + I++ ++ LDL+H + L
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281
Query: 255 PKEI-GNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLN 311
+ L L+L +N++ I + L NL L LSYN L + +
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341
Query: 312 EFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI 371
+++ ++ + D L + + L N T S+ I N++ +
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTL 396
Query: 372 PYGIFSRAKNLSKVNMKDNLLTSLPLD--LGTWVGLTELNLGTNQISKLSED--IQNLVN 427
P + + +++ +N L +L + L L L L N+ S S D +
Sbjct: 397 PKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452
Query: 428 LEVLVLSNNLLKKL------PSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQ 480
LE L L N+L+ L L+ L L N L SLP + L L+ L L
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512
Query: 481 SNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDN 528
SN+L L NL L + N L + + +L L + N
Sbjct: 513 SNRLTVLSHND-LPANLEILDISRNQLLAPNPD--VFVSLSVLDITHN 557
Score = 177 bits (450), Expect = 2e-47
Identities = 101/457 (22%), Positives = 186/457 (40%), Gaps = 46/457 (10%)
Query: 157 NSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIK-TVHPDI-Q 213
+LT +P L + L L N + + + L L++L L T+ + +
Sbjct: 14 CNLTQVPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70
Query: 214 YLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEEL---PKEIGNCTMLVTLDL 269
L NL +L + +KI L P+ L +L L L L + N L LDL
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 270 QHNEL--VNIPDMLGNLINLTRLRLSYNRLESVP-ETLS--KCVHLNEFNVEGCALSSLP 324
N++ + + G L +L + S N++ V L + L+ F++ +L S
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 325 DGLLSSL------TSINNITLSRNKFTAYPSGGPTQFTSVYSI------------NFEHN 366
+ + +S N +T +G + S F +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250
Query: 367 QIDKIPYGIFS--RAKNLSKVNMKDNLLTSLPLDLGTWVG-LTELNLGTNQISKLSEDI- 422
I F+ ++ +++ + SL + + L LNL N+I+K++++
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310
Query: 423 QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQ 480
L NL+VL LS NLL +L SS L K+ +DL++N + + ++ FL++LQ L L+
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 481 SNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELAL 540
N L ++ + ++ + + N L ++P+ T +H L N L+ + F L +
Sbjct: 371 DNALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANLIH-LSENRLENLDILYFLLRV 425
Query: 541 CSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYLKMQG 577
+LQI+ L+ S + + L +
Sbjct: 426 -PHLQILILNQNRFSSCSGDQTPSENPS-LEQLFLGE 460
Score = 144 bits (366), Expect = 1e-36
Identities = 80/381 (20%), Positives = 144/381 (37%), Gaps = 43/381 (11%)
Query: 95 FLRCKEENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCL 152
F ++ +LDLS + L V E L L+ L L NK+ + + + NL L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 153 GLAENSLTSLP-DSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHP 210
L+ N L L + L ++ +DL+ N + + +K L L+ L LR N + T
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT--- 376
Query: 211 DIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKE--IGNCTMLVTLD 268
I ++ ++ + + NK+ LP + L+ N LE L + L L
Sbjct: 377 -IHFIPSIPDIFLSGNKLVTLPKINLTAN---LIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 269 LQHNELVNIPD--MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDG 326
L N + +L +L L N L+ ET L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET------------------ELCWD 474
Query: 327 LLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVN 386
+ L+ + + L+ N + P G + T++ ++ N++ + + NL ++
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD 532
Query: 387 MKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIG 446
+ N L + D +V L+ L++ N K + + + L +N + P+ I
Sbjct: 533 ISRNQLLAPNPD--VFVSLSVLDITHN---KFICECELSTFINWLNHTNVTIAGPPADI- 586
Query: 447 NLRKLKCLDLEENKLESLPNE 467
+ L SL E
Sbjct: 587 --YCVYPDSFSGVSLFSLSTE 605
Score = 81.4 bits (201), Expect = 3e-16
Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 29/225 (12%)
Query: 102 NILNLDLSKSSITHLPPSV--EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSL 159
++ L L+++ + + LE+L+L N L
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET----------------- 469
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFNRIKTVHPDIQYLSNL 218
D L L+VL L HN LN LP V LT+L+ L L NR+ + + +NL
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANL 528
Query: 219 SMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
+L + N++ P++ +L LD+ HN I C + ++ ++ V I
Sbjct: 529 EILDISRNQLLAPNPDV--FVSLSVLDITHNKF------ICECELSTFINWLNHTNVTIA 580
Query: 279 DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSL 323
++ + S L S+ + + +
Sbjct: 581 GPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCT 625
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 200 bits (510), Expect = 7e-57
Identities = 73/395 (18%), Positives = 164/395 (41%), Gaps = 19/395 (4%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKL-ASLPSQIGYVTNLTCLGLAENSLTSLP 163
N+ + + +++ ++++ + + N + +++ LP
Sbjct: 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67
Query: 164 -DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSNLSM 220
L + +Q+ +L+L ++ E+ + +++ LY+ FN I+ + P + Q + L++
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127
Query: 221 LSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIP 278
L + N + LP + L TL +++N+LE + + T L L L N L ++
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187
Query: 279 DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNIT 338
L + +L +SYN L ++ ++ + E + +++ + + LT +
Sbjct: 188 --LSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILK--- 238
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD 398
L N T + + + ++ +N+++KI Y F + + L ++ + +N L +L L
Sbjct: 239 LQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296
Query: 399 LGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEE 458
L L+L N + + + LE L L +N + L + LK L L
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354
Query: 459 NKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGH 493
N + F + + ++Q + + H
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389
Score = 122 bits (308), Expect = 1e-29
Identities = 61/287 (21%), Positives = 96/287 (33%), Gaps = 19/287 (6%)
Query: 291 RLSYNRLESVPETLSKCVHLNEFNV-EGCALSSLPDGLLSSLTSIN-----NITLSRNKF 344
+ YN PE +L V + + I +T +
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 345 TAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVG 404
P+ F V +N QI++I F+ A + K+ M N + LP + V
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123
Query: 405 -LTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKL 461
LT L L N +S L I N L L +SNN L+++ L+ L L N+L
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 462 ESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLH 521
+ + + L + N L +L + L N++ + L
Sbjct: 184 THVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRG--PVNVELT 235
Query: 522 TLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
L L N L + + L L + L L +I V L
Sbjct: 236 ILKLQHNN-LTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 197 bits (501), Expect = 2e-55
Identities = 82/331 (24%), Positives = 130/331 (39%), Gaps = 59/331 (17%)
Query: 238 LKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRL 297
L++ + L LP + + TL + N L ++P + L L +S N+L
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLTSLPALPPEL---RTLEVSGNQL 93
Query: 298 ESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTS 357
S+P + L+ F+ L +LP GL + + N+ T+ P
Sbjct: 94 TSLPVLPPGLLELSIFSNPLTHLPALPSGLCK-------LWIFGNQLTSLPV----LPPG 142
Query: 358 VYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISK 417
+ ++ NQ+ +P L K+ +N LTSLP+ GL EL++ NQ++
Sbjct: 143 LQELSVSDNQLASLPALP----SELCKLWAYNNQLTSLPMLPS---GLQELSVSDNQLAS 195
Query: 418 LSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRL 477
L L L NN L LP+ L++L + N+L SLP EL+ L
Sbjct: 196 LPTLPSELYKLW---AYNNRLTSLPALPSGLKEL---IVSGNRLTSLPVLPS---ELKEL 246
Query: 478 ILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFE 537
++ N+L SLP L LSV N L +PE + L + T+ L N
Sbjct: 247 MVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN--------- 294
Query: 538 LALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
PLS+ + + S
Sbjct: 295 ---------------PLSERTLQALREITSA 310
Score = 197 bits (501), Expect = 2e-55
Identities = 88/389 (22%), Positives = 147/389 (37%), Gaps = 41/389 (10%)
Query: 89 LNIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTN 148
+ ++ C L++ +S +T LP + H+ L + N L SLP+
Sbjct: 28 AAVVQKMRACLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPP---E 82
Query: 149 LTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV 208
L L ++ N LTSLP L +L + L LP + L L++ N++ ++
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSL 136
Query: 209 HPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLD 268
L LS+ DN++ LP L L +N L LP L L
Sbjct: 137 PVLP---PGLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSLPMLPSG---LQELS 187
Query: 269 LQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLL 328
+ N+L ++P + L +L NRL S+P S L E V G L+SLP L
Sbjct: 188 VSDNQLASLPTLPS---ELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSLPV-LP 240
Query: 329 SSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMK 388
S L + +S N+ T+ P + + S++ NQ+ ++P + + + VN++
Sbjct: 241 SELKELM---VSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLI-HLSSETTVNLE 292
Query: 389 DNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNL 448
N L+ L +T + I + + + +P+ G
Sbjct: 293 GNPLSERTLQA--LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350
Query: 449 RKLKCLDLEENKLESLPNEIGFLKELQRL 477
+ N F L RL
Sbjct: 351 APADRWHM----FGQEDNADAFSLFLDRL 375
Score = 185 bits (472), Expect = 2e-51
Identities = 71/365 (19%), Positives = 119/365 (32%), Gaps = 37/365 (10%)
Query: 192 LTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHL 251
+L + + + T+ + ++++ L + DN + LP L TL+++ N L
Sbjct: 39 NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPP---ELRTLEVSGNQL 93
Query: 252 EELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLN 311
LP L L +P L +L + N+L S+P L
Sbjct: 94 TSLPVLPPGLLELSIFSNPLTHLPALPS------GLCKLWIFGNQLTSLPVLPP---GLQ 144
Query: 312 EFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKI 371
E +V L+SLP L S L + N+ T+ P + + ++ NQ+ +
Sbjct: 145 ELSVSDNQLASLPA-LPSELCKLW---AYNNQLTSLPM----LPSGLQELSVSDNQLASL 196
Query: 372 PYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVL 431
P L K+ +N LTSLP GL EL + N+++ L L L
Sbjct: 197 PTLP----SELYKLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLPSELKELM-- 247
Query: 432 VLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAI 491
+S N L LP L L + N+L LP + L + L+ N L
Sbjct: 248 -VSGNRLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303
Query: 492 GHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDN 551
+ + + E +
Sbjct: 304 LREITSAPGY--SGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361
Query: 552 CPLSQ 556
+
Sbjct: 362 EDNAD 366
Score = 88.4 bits (219), Expect = 1e-18
Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 10/193 (5%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ L +S + +T LP + L+EL + GN+L SLP L L + N LT
Sbjct: 221 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPMLPS---GLLSLSVYRNQLT 274
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
LP+SL +L ++L N L+E + + I +
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQAL--REITSAPGYSGPIIRFDMAGASAPRETR 332
Query: 221 LSMRDNKIRELPPELGELKNLVTLDL--AHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
+P GE + ++ + + + I
Sbjct: 333 ALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQIS 392
Query: 279 DMLGNLINLTRLR 291
L L LR
Sbjct: 393 SWLAQLAEDEALR 405
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 189 bits (483), Expect = 3e-54
Identities = 81/451 (17%), Positives = 149/451 (33%), Gaps = 54/451 (11%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ + + + S E+L L L + + + + I +T LT L N++T
Sbjct: 21 ASEVAAAFEMQATDTI--SEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNIT 77
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
+L L+ L L NKL L V LT L L N++ + D+ L+
Sbjct: 78 TLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL--DVSQNPLLTY 131
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
L+ N + E+ + L LD N ++ T L TLD N++ +
Sbjct: 132 LNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD-- 186
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340
+ L RL N + + L++ + L + L+ + L+ LT +
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFD----- 239
Query: 341 RNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLG 400
N + ++ S L+ ++ L + DL
Sbjct: 240 ----------------------CSVNPLTELDVSTLS---KLTTLHCIQTDLLEI--DLT 272
Query: 401 TWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENK 460
L + K D+ + L +L + +L + KL L L +
Sbjct: 273 HNTQLIYFQAEGCRKIK-ELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTE 329
Query: 461 LESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENL 520
L L + +L+ L + + ++G + L+ E ++P+E T +L
Sbjct: 330 LTELD--VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSL 386
Query: 521 HTLYLNDNTCLNNIPFELALCSNLQIMSLDN 551
D P + N
Sbjct: 387 TIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417
Score = 173 bits (441), Expect = 2e-48
Identities = 92/432 (21%), Positives = 157/432 (36%), Gaps = 51/432 (11%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ +LD SSIT + +EKLT L +L N + +L + TNLT L N LT
Sbjct: 42 ATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT 98
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
+L + L +L L+ NKL +L V + L L N + + D+ + + L+
Sbjct: 99 NLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTE 152
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
L NK + L TLD + N + EL + +L L+ N + +
Sbjct: 153 LDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD-- 207
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340
L I LT L S N+L + ++ L F+ L+ L LS LT+++
Sbjct: 208 LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH---CI 262
Query: 341 RNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLG 400
+ TQ F+ KI + L ++ + +T L DL
Sbjct: 263 QTDLLEIDLTHNTQLI-----YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL--DLS 315
Query: 401 TWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENK 460
L L L ++++L D+ + L+ L N ++ S +G + L E +
Sbjct: 316 QNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQ 372
Query: 461 LESL----------------------PNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLS 498
++ N + + Q+ ++ ++
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432
Query: 499 YLSVGENNLQSI 510
Y EN
Sbjct: 433 YTFTSENGAIVG 444
Score = 150 bits (381), Expect = 7e-40
Identities = 75/364 (20%), Positives = 142/364 (39%), Gaps = 29/364 (7%)
Query: 196 KILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELP 255
+ F T + L+ L+ L ++ I ++ + +L L L N++ L
Sbjct: 22 SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD 80
Query: 256 KEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNV 315
+ T L L N+L N+ + L LT L N+L + +S+ L N
Sbjct: 81 --LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNC 134
Query: 316 EGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGI 375
L+ + +S T + + NK T T + +++ N+I ++
Sbjct: 135 ARNTLTEID---VSHNTQLTELDCHLNKKITKLDV--TPQTQLTTLDCSFNKITELD--- 186
Query: 376 FSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSN 435
S+ K L+++N N +T L DL + LT L+ +N+++++ D+ L L S
Sbjct: 187 VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEI--DVTPLTQLTYFDCSV 242
Query: 436 NLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLT 495
N L +L + L KL L + L + + +L + + + + H T
Sbjct: 243 NPLTELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-DVTHNT 297
Query: 496 NLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS 555
L L + + + L LYLN+ L + ++ + L+ +S N +
Sbjct: 298 QLYLLDCQAAGITELD--LSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQ 352
Query: 556 QIPS 559
S
Sbjct: 353 DFSS 356
Score = 134 bits (339), Expect = 3e-34
Identities = 59/321 (18%), Positives = 118/321 (36%), Gaps = 27/321 (8%)
Query: 238 LKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRL 297
+ V + + L +LD ++ + ++ + L LT+L + N +
Sbjct: 20 FASEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76
Query: 298 ESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTS 357
++ LS+ +L + L++L L+ LT +N NK T T
Sbjct: 77 TTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLN---CDTNKLTKLDVSQNPLLTY 131
Query: 358 VYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISK 417
+N N + +I S L++++ N + D+ LT L+ N+I++
Sbjct: 132 ---LNCARNTLTEID---VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE 184
Query: 418 LSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRL 477
L D+ L L N + KL + +L LD NKL + + L +L
Sbjct: 185 L--DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYF 238
Query: 478 ILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFE 537
N L L + L+ L+ L + +L I + L + + +
Sbjct: 239 DCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL--D 292
Query: 538 LALCSNLQIMSLDNCPLSQIP 558
+ + L ++ ++++
Sbjct: 293 VTHNTQLYLLDCQAAGITELD 313
Score = 67.0 bits (164), Expect = 6e-12
Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 8/150 (5%)
Query: 409 NLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEI 468
L Q ++ + + + + S L L LD + + + I
Sbjct: 2 TLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GI 60
Query: 469 GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDN 528
L L +LI SN + +L + TNL+YL+ N L ++ + L L L + N
Sbjct: 61 EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116
Query: 529 TCLNNIPFELALCSNLQIMSLDNCPLSQIP 558
L + + L ++ L++I
Sbjct: 117 -KLTKLDV--SQNPLLTYLNCARNTLTEID 143
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 176 bits (450), Expect = 9e-53
Identities = 31/165 (18%), Positives = 58/165 (35%)
Query: 122 KLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNK 181
+L +L +L L + +G + + L LT L ++ L + L + +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 182 LNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNL 241
L L V +L L + + + + L S L ++ EL +GEL
Sbjct: 62 LTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEK 121
Query: 242 VTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLIN 286
L + L +L +G + EL ++ L +
Sbjct: 122 SKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLGH 166
Score = 159 bits (405), Expect = 2e-46
Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 1/162 (0%)
Query: 400 GTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEEN 459
G ++L ++++L + L L L +L +++G L + L
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 460 KLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLEN 519
+L L +G L E +L +L L A+G L S L L + +G L
Sbjct: 61 ELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPE 120
Query: 520 LHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEI 561
L L + + + L+ + +
Sbjct: 121 KSKLQEIYQE-LTQLKAAVGELPDQSKQQQIYQELTDLKTAF 161
Score = 158 bits (403), Expect = 5e-46
Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 1/164 (0%)
Query: 380 KNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLK 439
SK+ LT L +G ++L ++++L + L L L
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 63
Query: 440 KLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSY 499
+L +++G L + L +L L +G L E +L +L L A+G L S
Sbjct: 64 RLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSK 123
Query: 500 LSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSN 543
L L + +G L + L ++ +
Sbjct: 124 LQEIYQELTQLKAAVGELPDQSKQQQIYQ-ELTDLKTAFERLGH 166
Score = 158 bits (401), Expect = 8e-46
Identities = 29/155 (18%), Positives = 55/155 (35%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
L +T L +V +L +L +L L + +G + + L LT L +
Sbjct: 9 LQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAA 68
Query: 166 LANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD 225
+ L + L + +L L V +L L + + + + L S L
Sbjct: 69 VGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIY 128
Query: 226 NKIRELPPELGELKNLVTLDLAHNHLEELPKEIGN 260
++ +L +GEL + + L +L
Sbjct: 129 QELTQLKAAVGELPDQSKQQQIYQELTDLKTAFER 163
Score = 151 bits (384), Expect = 3e-43
Identities = 28/161 (17%), Positives = 53/161 (32%)
Query: 167 ANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDN 226
L + L + +L L V +L L + + + + L S L
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 227 KIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLIN 286
++ L +GEL L + L L +G L + EL + +G L
Sbjct: 61 ELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPE 120
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGL 327
++L+ Y L + + + ++ L+ L
Sbjct: 121 KSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAF 161
Score = 139 bits (352), Expect = 8e-39
Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 1/159 (0%)
Query: 191 KLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNH 250
+L L + + + + L S L ++ L +GEL L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 251 LEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHL 310
L L +G L + EL + +G L ++L+ Y L + + +
Sbjct: 62 LTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEK 121
Query: 311 NEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPS 349
++ L+ L + L + + T +
Sbjct: 122 SKLQEIYQELTQLKAA-VGELPDQSKQQQIYQELTDLKT 159
Score = 129 bits (328), Expect = 2e-35
Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 49/213 (23%)
Query: 236 GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYN 295
GEL L + L L +G L + EL + +G L ++L+ Y
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 296 RLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQF 355
L + + + ++ L+ L + L
Sbjct: 61 ELTRLKAAVGELPEKSKLQEIYQELTRLKAA-VGELP----------------------- 96
Query: 356 TSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQI 415
SK+ LT L +G ++L ++
Sbjct: 97 -------------------------EKSKLQEIYQELTELKAAVGELPEKSKLQEIYQEL 131
Query: 416 SKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNL 448
++L + L + L L ++ L
Sbjct: 132 TQLKAAVGELPDQSKQQQIYQELTDLKTAFERL 164
Score = 109 bits (274), Expect = 5e-28
Identities = 20/112 (17%), Positives = 41/112 (36%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
L +T L +V +L +L +L L + +G + + L LT L +
Sbjct: 55 LQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAA 114
Query: 166 LANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSN 217
+ L + L + +L +L V +L + + + + L +
Sbjct: 115 VGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLGH 166
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 185 bits (472), Expect = 2e-52
Identities = 74/422 (17%), Positives = 144/422 (34%), Gaps = 23/422 (5%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASL-PSQIGYVTNLTCLGLAENSLTSLP 163
++ SS+ S+ + +++EL L GN L+ + + + T L L L+ N L
Sbjct: 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74
Query: 164 DSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSM 223
D L +L LR LDL +N + EL S++ L+ N I V + +
Sbjct: 75 D-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYL 127
Query: 224 RDNKIRELPP-ELGELKNLVTLDLAHNHLEELPKE--IGNCTMLVTLDLQHNELVNIPDM 280
+NKI L + G + LDL N ++ + + L L+LQ+N + ++
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340
+ L L LS N+L + + ++ L + L ++ + L
Sbjct: 188 V-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLR 245
Query: 341 RNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP---- 396
N F + + + K+ + + LP
Sbjct: 246 GNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304
Query: 397 --LDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIG-NLRKLKC 453
L L+ ++ +L + +N + + + + +
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364
Query: 454 LDLEENKLESLP-NEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPE 512
L+ ++ L+ N EL + Q+ + L A + L L + +
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424
Query: 513 EI 514
E
Sbjct: 425 EQ 426
Score = 180 bits (457), Expect = 3e-50
Identities = 68/434 (15%), Positives = 149/434 (34%), Gaps = 26/434 (5%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
N+ LDLS + ++ + + T LE L L N L + ++ L L L N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ 93
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD-IQYLSNLS 219
L + L +N ++ + + K +YL N+I + S +
Sbjct: 94 ELL----VGPSIETLHAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147
Query: 220 MLSMRDNKIRELPPE--LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI 277
L ++ N+I + L L+L +N + ++ ++ L TLDL N+L +
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM 206
Query: 278 PDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNI 337
+ +T + L N+L + + L +L F++ G L + +
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT--LRDFFSKNQRV 264
Query: 338 -TLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMK-----DNL 391
T+++ + T ++ + +P R L + +
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPS----SIG 446
L + E++ Q + + + L L + S +
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384
Query: 447 NLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENN 506
L + + +L+ E L+ L+ ++ + ++ + + + + ++
Sbjct: 385 ELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM-YVEQQSVQNNAIRDWDMYQHK 443
Query: 507 LQSIPEEIGTLENL 520
+ EE L+ L
Sbjct: 444 ETQLAEENARLKKL 457
Score = 170 bits (432), Expect = 7e-47
Identities = 56/419 (13%), Positives = 139/419 (33%), Gaps = 66/419 (15%)
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPD-IQYLSNL 218
++ + N + ++ + + L + + + ++K L L N + + + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 219 SMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
+L++ N + E L L L TLDL +N+++EL + TL +N + +
Sbjct: 61 ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVS 115
Query: 279 DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNIT 338
+ L+ N+ ++ L D + + +
Sbjct: 116 --CSRGQGKKNIYLANNK-----------------------ITMLRDLDEGCRSRVQYLD 150
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYG-IFSRAKNLSKVNMKDNLLTSLPL 397
L N+ID + + + + + L +N++ N + +
Sbjct: 151 LK------------------------LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 398 DLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLE 457
+ + L L+L +N+++ + + Q+ + + L NN L + ++ + L+ DL
Sbjct: 187 QV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245
Query: 458 ENKLESLPNEIGFLKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSIPEEIG- 515
N F K + + + L + T + G + +P
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305
Query: 516 -----TLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLI 569
+ L + + E + + + + ++ + + I
Sbjct: 306 RLIALKRKEHALLSGQGSE-TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363
Score = 166 bits (423), Expect = 1e-45
Identities = 63/433 (14%), Positives = 141/433 (32%), Gaps = 43/433 (9%)
Query: 138 SLPSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSL 195
++ + ++SL + ++ LDL N L+++ + T L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 196 KILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELP 255
++L L N + D++ LS L L + +N ++EL ++ TL A+N++ +
Sbjct: 61 ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115
Query: 256 KEIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
G + L +N++ + D G + L L N +++V
Sbjct: 116 CSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------------- 160
Query: 315 VEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYG 374
L +S ++ ++ L N F + +++ N++ +
Sbjct: 161 ---------FAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE 209
Query: 375 IFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLS 434
F A ++ +++++N L + L L +L N + N V ++
Sbjct: 210 -FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268
Query: 435 NNLLKKLPS-SIGNLRKLKCLDLEENKLESLPNEIG------FLKELQRLILQSNQLVSL 487
+KKL + E LP KE L Q ++ L
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328
Query: 488 PRAIGHLTNLSYLSVGENNLQSIPEEIGT-LENLHTLYLNDNTCLNNIPFELALCSNLQI 546
+ + + +++ +++ + TL + + L
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388
Query: 547 MSLDNCPLSQIPS 559
++
Sbjct: 389 TLQQAVGQIELQH 401
Score = 144 bits (364), Expect = 2e-37
Identities = 54/385 (14%), Positives = 117/385 (30%), Gaps = 41/385 (10%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS 161
+ LDL+ + + L +E L+ N ++ + G + LA N +T
Sbjct: 81 TLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITM 134
Query: 162 LPD-SLANLQQLRVLDLRHNKLNELPM--VVYKLTSLKILYLRFNRIKTVHPDIQYLSNL 218
L D +++ LDL+ N+++ + + +L+ L L++N I V + + L
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKL 193
Query: 219 SMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L + NK+ + PE + + L +N L + K + L DL+ N
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253
Query: 279 DMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLT----- 332
N ++ ++ + + +C + LP L
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313
Query: 333 -----------------------SINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID 369
I + ++ + + ++ + +D
Sbjct: 314 EHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
Query: 370 KIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQ--NLVN 427
+ L + L L L + ++ + Q
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433
Query: 428 LEVLVLSNNLLKKLPSSIGNLRKLK 452
+ + + +L L+KL
Sbjct: 434 IRDWDMYQHKETQLAEENARLKKLN 458
Score = 131 bits (332), Expect = 3e-33
Identities = 42/317 (13%), Positives = 103/317 (32%), Gaps = 47/317 (14%)
Query: 277 IPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINN 336
I ++ N +++ + L L S ++
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSL-----------------------KQALASLRQSAWNVKE 38
Query: 337 ITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ LS N + + FT + +N N + + L +++ +N + L
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 397 -----------------LDLGTWVGLTELNLGTNQISKLSED-IQNLVNLEVLVLSNNLL 438
+ G + L N+I+ L + ++ L L N +
Sbjct: 97 VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 439 KKLPSS--IGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTN 496
+ + + L+ L+L+ N + + ++ +L+ L L SN+L +
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAG 215
Query: 497 LSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQ 556
++++S+ N L I + + +NL L N + N ++ ++ + +
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKK 274
Query: 557 IPSEIVVGGPSLIIRYL 573
+ + + +
Sbjct: 275 LTGQNEEECTVPTLGHY 291
Score = 106 bits (265), Expect = 2e-24
Identities = 40/312 (12%), Positives = 88/312 (28%), Gaps = 20/312 (6%)
Query: 91 IEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLT 150
+ L + + +L+L + I + V L+ L L NKLA + + +T
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217
Query: 151 CLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV-H 209
+ L N L + +L Q L DLR N + + + + ++ + +K +
Sbjct: 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277
Query: 210 PDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDL 269
+ + + ++ +LP L+ L + L L
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPF--ADRLIALKRKEHAL---------------LSG 320
Query: 270 QHNELVNIPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLL 328
Q +E + N + + +V + + + AL
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380
Query: 329 SSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMK 388
+ ++ Q + + + +M
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMY 440
Query: 389 DNLLTSLPLDLG 400
+ T L +
Sbjct: 441 QHKETQLAEENA 452
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 183 bits (467), Expect = 9e-52
Identities = 74/320 (23%), Positives = 135/320 (42%), Gaps = 11/320 (3%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL-P 163
+ + +P + T L L N++ +L +L L L EN ++++ P
Sbjct: 16 VLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 164 DSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDI-QYLSNLSML 221
+ NL LR L LR N+L +P+ V+ L++L L + N+I + + Q L NL L
Sbjct: 74 GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133
Query: 222 SMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIPD 279
+ DN + + L +L L L +L +P E + L+ L L+H + I D
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193
Query: 280 -MLGNLINLTRLRLSY-NRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNI 337
L L L +S+ L+++ ++L ++ C L+++P + L + +
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 338 TLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL 397
LS N + + + I Q+ + F L +N+ N LT+L
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313
Query: 398 DL-GTWVGLTELNLGTNQIS 416
+ + L L L +N ++
Sbjct: 314 SVFHSVGNLETLILDSNPLA 333
Score = 181 bits (461), Expect = 5e-51
Identities = 73/315 (23%), Positives = 135/315 (42%), Gaps = 11/315 (3%)
Query: 156 ENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYK-LTSLKILYLRFNRIKTVHPDI-Q 213
++P+ + + R+LDL N++ L + L+ L L N + V P
Sbjct: 20 RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77
Query: 214 YLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQH 271
L NL L +R N+++ +P L NL LD++ N + L + + L +L++
Sbjct: 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 272 NELVNIPD-MLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLS 329
N+LV I L +L +L L L S+P E LS L + ++++ D
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197
Query: 330 SLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD 389
L + + +S + + ++ S++ H + +PY L +N+
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257
Query: 390 NLLTSLPLD-LGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-G 446
N ++++ L + L E+ L Q++ + + L L VL +S N L L S+
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317
Query: 447 NLRKLKCLDLEENKL 461
++ L+ L L+ N L
Sbjct: 318 SVGNLETLILDSNPL 332
Score = 179 bits (455), Expect = 5e-50
Identities = 86/412 (20%), Positives = 156/412 (37%), Gaps = 48/412 (11%)
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIR 229
Q R + + +P + T ++L L NRIKT++ D +L L + +N +
Sbjct: 12 QDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69
Query: 230 ELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIPD-MLGNLIN 286
+ P L NL TL L N L+ +P + + L LD+ N++V + D M +L N
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTA 346
L L + N L + S L S+ +TL + T+
Sbjct: 130 LKSLEVGDNDL-----------------------VYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 347 YPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD-NLLTSLPLDLGTWVGL 405
P+ + + + H I+ I F R L + + L ++ + + L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 406 TELNLGTNQISKLSED-IQNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLES 463
T L++ ++ + +++LV L L LS N + + S+ L +L+ + L +L
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 464 LPNEIGF--LKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIPEEIGTLENL 520
+ F L L+ L + NQL +L + NL L + N L +
Sbjct: 287 VEPYA-FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC---------DC 336
Query: 521 HTLYLNDNTCLNNIPFELALCS---NLQIMSLDNCPLSQIPSEIVVGGPSLI 569
L++ N + C+ +Q + P +P+ +
Sbjct: 337 RLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIR 388
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 175 bits (445), Expect = 3e-50
Identities = 59/326 (18%), Positives = 114/326 (34%), Gaps = 33/326 (10%)
Query: 212 IQYLSNLSMLSMRDNKIRELPPELGE-LKNLVTLDLAHNHLEELP-KEIGNCTMLVTLDL 269
Q + + + D+ +++ L + N+ LDL+ N L ++ ++ T L L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 270 QHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLS 329
N L D L +L L L L+ N ++ L + + +S +
Sbjct: 66 SSNVLYETLD-LESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCSRGQ 120
Query: 330 SLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD 389
+I L+ NK T + V ++ + N+ID + +
Sbjct: 121 GKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------------- 164
Query: 390 NLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLR 449
+ L LNL N I + + L+ L LS+N L + +
Sbjct: 165 ---------AASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAA 214
Query: 450 KLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQS 509
+ + L NKL + + F + L+ L+ N N +V + ++
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274
Query: 510 IPEEIGTLENLHTLYLNDNTCLNNIP 535
+ + + TL C ++P
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLP 300
Score = 164 bits (416), Expect = 4e-46
Identities = 56/245 (22%), Positives = 99/245 (40%), Gaps = 14/245 (5%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLP-SQIGYVTNLTCLGLAENSLTSLP 163
++ SS+ S+ + +++EL L GN L+ + + + T L L L+ N L
Sbjct: 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74
Query: 164 DSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSM 223
D L +L LR LDL +N + EL S++ L+ N I V + +
Sbjct: 75 D-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYL 127
Query: 224 RDNKIRELPP-ELGELKNLVTLDLAHNHLEELPKE--IGNCTMLVTLDLQHNELVNIPDM 280
+NKI L + G + LDL N ++ + + L L+LQ+N + ++
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340
+ L L LS N+L + + ++ L + L ++ + L
Sbjct: 188 V-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLR 245
Query: 341 RNKFT 345
N F
Sbjct: 246 GNGFH 250
Score = 161 bits (410), Expect = 3e-45
Identities = 56/372 (15%), Positives = 119/372 (31%), Gaps = 81/372 (21%)
Query: 138 SLPSQIGYVTNLTCLGLAENSLTSLPDS-LANLQQLRVLDLRHNKLNELPM-VVYKLTSL 195
++ + ++SL S + ++ LDL N L+++ + T L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 196 KILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELP 255
++L L N + D++ LS L L + +N ++EL ++ TL A+N++ +
Sbjct: 61 ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115
Query: 256 KEIGNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
G + L +N++ + D G + L L N +++V
Sbjct: 116 CSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------------- 160
Query: 315 VEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYG 374
L +S ++ ++ L +N I +
Sbjct: 161 ---------FAELAASSDTLEHLNLQ------------------------YNFIYDVKGQ 187
Query: 375 IFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLS 434
+ L L+L +N+++ + + Q+ + + L
Sbjct: 188 VV---------------FAKL----------KTLDLSSNKLAFMGPEFQSAAGVTWISLR 222
Query: 435 NNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHL 494
NN L + ++ + L+ DL N F K + + + L
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282
Query: 495 TNLSYLSVGENN 506
+ L
Sbjct: 283 CTVPTLGHYGAY 294
Score = 148 bits (376), Expect = 2e-40
Identities = 51/251 (20%), Positives = 92/251 (36%), Gaps = 11/251 (4%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS 161
+ L+LS + + +E L+ L L L N + L ++ L A N+++
Sbjct: 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISR 113
Query: 162 LPDSLANLQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFNRIKTVHPD--IQYLSNL 218
+ S Q + + L +NK+ L + + ++ L L+ N I TV+ L
Sbjct: 114 VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 219 SMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP 278
L+++ N I ++ ++ L TLDL+ N L + E + + + L++N+LV I
Sbjct: 172 EHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 279 DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNIT 338
L NL L N + V + L T
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290
Query: 339 LSRNKFTAYPS 349
P+
Sbjct: 291 YGAYCCEDLPA 301
Score = 148 bits (376), Expect = 2e-40
Identities = 53/345 (15%), Positives = 110/345 (31%), Gaps = 42/345 (12%)
Query: 123 LTHLEELYLYGNKLASLPSQIG-YVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHN 180
+ + + L + + N+ L L+ N L+ + LA +L +L+L N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 181 KLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKN 240
L E + L++L+ L L N ++ + ++ L +N I + +
Sbjct: 69 VLYETL-DLESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCSR--GQG 121
Query: 241 LVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVNIP--DMLGNLINLTRLRLSYNRL 297
+ LA+N + L + G + + LDL+ NE+ + ++ + L L L YN +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181
Query: 298 ESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTS 357
V L ++ L+ + S + I+L NK
Sbjct: 182 YDVKG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA------- 232
Query: 358 VYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISK 417
++NL +++ N L + + K
Sbjct: 233 ------------------LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274
Query: 418 LSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLE 462
L+ + + L + + + L +
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLP---APFADRLIALGHHHHH 316
Score = 138 bits (351), Expect = 5e-37
Identities = 47/289 (16%), Positives = 96/289 (33%), Gaps = 38/289 (13%)
Query: 277 IPDMLGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSIN 335
I ++ N +++ + L+ ++ E ++ G LS + L+ T +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 336 NITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL 395
+ LS N L +++ +N + L
Sbjct: 62 LLNLSSNVLYETLD--------------------------LESLSTLRTLDLNNNYVQEL 95
Query: 396 PLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPS-SIGNLRKLKCL 454
+ + L+ N IS++S + + L+NN + L G +++ L
Sbjct: 96 LVG----PSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 455 DLEENKLESLPNE--IGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPE 512
DL+ N+++++ L+ L LQ N + + + L L + N L +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGP 208
Query: 513 EIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEI 561
E + + + L +N L I L NL+ L
Sbjct: 209 EFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256
Score = 102 bits (256), Expect = 4e-24
Identities = 35/194 (18%), Positives = 65/194 (33%), Gaps = 6/194 (3%)
Query: 105 NLDLSKSSITHLPP-SVEKLTHLEELYLYGNKLASLPSQ--IGYVTNLTCLGLAENSLTS 161
N+ L+ + IT L + ++ L L N++ ++ L L L N +
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183
Query: 162 LPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSML 221
+ +L+ LDL NKL + + + LR N++ + +++ NL
Sbjct: 184 VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242
Query: 222 SMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD-- 279
+R N KN +A +++L + + TL
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302
Query: 280 MLGNLINLTRLRLS 293
LI L
Sbjct: 303 FADRLIALGHHHHH 316
Score = 94.3 bits (235), Expect = 2e-21
Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 11/164 (6%)
Query: 405 LTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLP-SSIGNLRKLKCLDLEENKLE 462
+ + + + + Q+ N++ L LS N L ++ + + KL+ L+L N L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 463 SLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHT 522
++ L L+ L L +N + L ++ L NN+ + G
Sbjct: 72 ETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQ--GKKN 124
Query: 523 LYLNDNTCLNNIP-FELALCSNLQIMSLDNCPLSQIPSEIVVGG 565
+YL +N + + + S +Q + L + + +
Sbjct: 125 IYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167
Score = 30.7 bits (70), Expect = 1.1
Identities = 11/60 (18%), Positives = 21/60 (35%)
Query: 509 SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
+I E + D++ + N++ + L PLSQI + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Score = 27.6 bits (62), Expect = 10.0
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 28/114 (24%)
Query: 90 NIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNK-------------- 135
+ EF + + L + + + ++ +LE L GN
Sbjct: 205 FMGPEFQSAA--GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262
Query: 136 ---------LASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180
+ L Q + LG + L R++ L H+
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC---EDLPAPFADRLIALGHH 313
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 178 bits (452), Expect = 5e-49
Identities = 89/458 (19%), Positives = 164/458 (35%), Gaps = 34/458 (7%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
L LS++SI+ L L+ L L L N++ SL + + +L L ++ N L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNELPM--VVYKLTSLKILYLRFNRIKTVHPDIQYLSN 217
++ + LR LDL N + LP+ LT L L L + + + +
Sbjct: 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 218 LS--MLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIG------NCTMLVTLDL 269
LS +L + I+ E ++ N L L + ++ L + L
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230
Query: 270 QHNELVNIPDMLGNLI-NLTRLRLSYNRLESVPETLSKCVH------LNEFNVEGCALSS 322
+ L L T L ++ +E+ + K + N+ ++
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290
Query: 323 LPDG-----LLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
D ++L S+ + F + F + + I
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350
Query: 378 RAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNN 436
+ + +N N+ T T L L L N + + N+ L +
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410
Query: 437 LLKKLPSSI-----GNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAI 491
L L S + L+L N L +++ L L +N+++S+P+ +
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNRIMSIPKDV 469
Query: 492 GHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
HL L L+V N L+S+P+ + L +L ++L+DN
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 168 bits (427), Expect = 1e-45
Identities = 90/432 (20%), Positives = 154/432 (35%), Gaps = 35/432 (8%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
L LS + I L V LE L + N+L ++ + +L L L+ N LP
Sbjct: 81 LRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLPV 138
Query: 165 S--LANLQQLRVLDLRHNKLNELPMVVYKLTSLKI--LYLRFNRIKTVHPDIQYLSNLSM 220
NL +L L L K +L ++ L L L IK + + N ++
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198
Query: 221 LSMRDNKIRELP---------PELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQH 271
L + + +L N+ D L E+ L+ + LQH
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258
Query: 272 NELVNIPDMLGNLINLTRLRLSYNRLESV-----------PETLSKCVHLNEFNVEGCAL 320
E + + Y + ++ + + L +V+
Sbjct: 259 IET-TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317
Query: 321 SSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAK 380
+ L S +N LS + P +S +NF N + S K
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377
Query: 381 NLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-----QNLVNLEVLVLSN 435
L + ++ N L + ++ L ++ L+ ++ VL LS+
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437
Query: 436 NLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHL 494
N+L K+K LDL N++ S+P ++ L+ LQ L + SNQL S+P L
Sbjct: 438 NMLTGSVFRCLP-PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496
Query: 495 TNLSYLSVGENN 506
T+L Y+ + +N
Sbjct: 497 TSLQYIWLHDNP 508
Score = 95.7 bits (238), Expect = 6e-21
Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 18/257 (7%)
Query: 103 ILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPS------QIGYVTNLTCLGLAE 156
+ +++ + L +E L +Y + + +L +
Sbjct: 256 LQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314
Query: 157 NSLTSLPDSLAN-LQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-Q 213
++L + ++ + L + + MV +S L N
Sbjct: 315 QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374
Query: 214 YLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNC-----TMLVTLD 268
L L L ++ N ++ KN+ +L+ L L + ++ L+
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 269 LQHNELVN-IPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGL 327
L N L + L + L L NR+ S+P+ ++ L E NV L S+PDG+
Sbjct: 435 LSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
Query: 328 LSSLTSINNITLSRNKF 344
LTS+ I L N +
Sbjct: 493 FDRLTSLQYIWLHDNPW 509
Score = 87.2 bits (216), Expect = 3e-18
Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 34/224 (15%)
Query: 329 SSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMK 388
+ ++ S T P P + ++ N I ++ S
Sbjct: 31 ELESMVD---YSNRNLTHVPKDLPPRTKALS---LSQNSISELRMPDISFLSE------- 77
Query: 389 DNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSIGN 447
L L L N+I L + +LE L +S+N L+ +
Sbjct: 78 ----------------LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CP 119
Query: 448 LRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGEN 505
+ L+ LDL N + LP F L +L L L + + L +LS + +
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179
Query: 506 NLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSL 549
+ E +L+ +T L+ N++ S + L
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Score = 80.3 bits (198), Expect = 5e-16
Identities = 44/312 (14%), Positives = 96/312 (30%), Gaps = 14/312 (4%)
Query: 266 TLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPET-LSKCVHLNEFNVEGCALSSLP 324
+D + L ++P L LS N + + +S L + + SL
Sbjct: 35 MVDYSNRNLTHVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD 92
Query: 325 DGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIP-YGIFSRAKNLS 383
+ + + +S N+ S+ ++ N D +P F L+
Sbjct: 93 FHVFLFNQDLEYLDVSHNRLQNISCCP---MASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149
Query: 384 KVNMKDNLLTSLPLDLGTWVGLT--ELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL 441
+ + L L + L+ L+L + I + + N VL L + L
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH-PNSL 208
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLS 501
S N+ L+ + ++ L + + L+++ T +
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268
Query: 502 VGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEI 561
+ + E + N++ L + + + +L I + N +
Sbjct: 269 LFQFFWPRPVEYL----NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324
Query: 562 VVGGPSLIIRYL 573
+ I+ L
Sbjct: 325 YSVFAEMNIKML 336
Score = 43.3 bits (102), Expect = 2e-04
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 22/91 (24%)
Query: 90 NIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNL 149
+ RC + LDL + I +P V L L+EL + N+L S+P
Sbjct: 439 MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP--------- 489
Query: 150 TCLGLAENSLTSLPDSLANLQQLRVLDLRHN 180
L L+ + L N
Sbjct: 490 -------------DGVFDRLTSLQYIWLHDN 507
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 176 bits (449), Expect = 6e-49
Identities = 89/483 (18%), Positives = 178/483 (36%), Gaps = 61/483 (12%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLT 160
+ +D SK+ + H+P + L + N ++ L + I ++ L L ++ N +
Sbjct: 1 SEFLVDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58
Query: 161 SLP-DSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD--IQYLSN 217
L Q+L LDL HNKL ++ + +LK L L FN + +S
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 218 LSMLSMRDNKIRELPP-----------------------ELGELKNLVTLDLAHNHLEE- 253
L L + + + + L++ T L
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 254 LPKEIGNCTMLVTLDLQHNELVNIPD----------MLGNLINLTRLRLSYNRLESVPET 303
I + ++ +L+ + + + + + N L+ N +E+ +
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 304 LSKC-----------VHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGP 352
+ ++ ++G D +SL +++ + + F S
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLG 411
F+++ NF + + S+ ++ +NLLT + G L L L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 412 TNQISKLSEDI---QNLVNLEVLVLSNNLLKKLPSSIG--NLRKLKCLDLEENKLESLPN 466
NQ+ +LS+ + +L+ L +S N + + L L++ N L
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
Query: 467 EIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYL 525
++ L L SN++ S+P+ + L L L+V N L+S+P+ I L +L ++L
Sbjct: 417 R-CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
Query: 526 NDN 528
+ N
Sbjct: 476 HTN 478
Score = 173 bits (440), Expect = 1e-47
Identities = 82/469 (17%), Positives = 167/469 (35%), Gaps = 26/469 (5%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
L++S++ I+ L S L+ L L + N++ L + + L L L+ N L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNELPMVVY--KLTSLKILYLRFNRIKTVHPDIQYLSN 217
+ L+ LDL N + LP+ ++ LK L L ++ N
Sbjct: 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 218 LSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEE-LPKEIGNCTMLVTLDLQHNELVN 276
+S + + + + L++ T L I + ++ +L+ + +
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199
Query: 277 IPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGL-LSSLT--S 333
+ + L+ L + + LN + + + +++ S
Sbjct: 200 VLEDNKCSYFLSIL------AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
I+N+ L T ++ + I+ N++ N +
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313
Query: 394 SLPLDLGTW-VGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSIG---NL 448
+ + + L+ N ++ + +L LE L+L N LK+L +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373
Query: 449 RKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENN 506
+ L+ LD+ +N + + K L L + SN L + L + N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPRIKVLDLHSNK 432
Query: 507 LQSIPEEIGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCPL 554
++SIP+++ LE L L + N L ++P ++LQ + L P
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 103 bits (257), Expect = 2e-23
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 9/185 (4%)
Query: 95 FLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLG 153
+ NI N +S + + H+ K++ L N L + G++T L L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 154 LAENSLTSLPDS---LANLQQLRVLDLRHNKLNELPMVVY--KLTSLKILYLRFNRIKTV 208
L N L L ++ L+ LD+ N ++ SL L + N +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Query: 209 HPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTL 267
+ +L + NKI+ +P ++ +L+ L L++A N L+ +P I T L +
Sbjct: 415 IFR-CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473
Query: 268 DLQHN 272
L N
Sbjct: 474 WLHTN 478
Score = 92.2 bits (229), Expect = 6e-20
Identities = 41/215 (19%), Positives = 69/215 (32%), Gaps = 31/215 (14%)
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD 398
S+N P +N N I ++
Sbjct: 7 RSKNGLIHVPKDLSQ---KTTILNISQNYISELWTSDILSLSK----------------- 46
Query: 399 LGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLE 457
L L + N+I L + + LE L LS+N L K+ LK LDL
Sbjct: 47 ------LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLS 98
Query: 458 ENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIG 515
N ++LP F + +L+ L L + L N+S + + E+
Sbjct: 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158
Query: 516 TLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLD 550
L++ +T L+ N + S + +L+
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193
Score = 41.8 bits (98), Expect = 5e-04
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 97 RCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLA 155
RC I LDL + I +P V KL L+EL + N+L S+P I +T+L + L
Sbjct: 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476
Query: 156 ENSL 159
N
Sbjct: 477 TNPW 480
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 172 bits (438), Expect = 7e-48
Identities = 91/397 (22%), Positives = 151/397 (38%), Gaps = 33/397 (8%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLA-SLPSQI-GYVTNLTCLGLAENS 158
++ +DLS +SI L + +L L+ L + + + +++L L L N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 159 LTSLPDS-LANLQQLRVLDLRHNKLNEL---PMVVYKLTSLKILYLRFNRIKTVHPDI-- 212
L L L VL L L+ LTSL++L LR N IK + P
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 213 QYLSNLSMLSMRDNKIRELPPEL---GELKNLVTLDLAHNHLEELPKEIG---------N 260
+ +L + NK++ + E + K+ L L+ L+++ +
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 261 CTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCA 319
T + TLDL N + I T+++ L + S H N + +
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ--SLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
L + + LS++K A + FT + + N+I+KI F
Sbjct: 269 FKGLEASGVKTC------DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 380 KNLSKVNMKDNLLTSLPLDLGTW-VGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNL 437
+L K+N+ N L S+ + L L+L N I L + L NL+ L L N
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 438 LKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGFLKE 473
LK +P I L L+ + L N + I +L
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 419
Score = 171 bits (436), Expect = 1e-47
Identities = 87/425 (20%), Positives = 166/425 (39%), Gaps = 69/425 (16%)
Query: 124 THLEELYLYGNKLASLPSQ-IGYVTNLTCLGLAENSLTSL--PDSLANLQQLRVLDLRHN 180
H+ + L N +A L + +L L + + + + ++ L L +L L +N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 181 KLNELPM-VVYKLTSLKILYLRFNRIK--TVHPDI-QYLSNLSMLSMRDNKIRELPPE-- 234
+ +L L +L++L L + + + + L++L ML +RDN I+++ P
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 235 LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSY 294
++ LDL N ++ + + + T LRLS
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICE-------------------EDLLNFQGK-HFTLLRLSS 189
Query: 295 NRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQ 354
L+ + E L G TSI + LS N F +
Sbjct: 190 ITLQDMNEY---------------WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234
Query: 355 FTSVYSI-----NFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELN 409
+ I + +N + F N + ++ + G+ +
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS-------------GVKTCD 281
Query: 410 LGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNE 467
L ++I L + + + +LE L L+ N + K+ + L L L+L +N L S+ +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Query: 468 IGF--LKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTL 523
+ F L +L+ L L N + +L ++ L NL L++ N L+S+P+ I L +L +
Sbjct: 342 M-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400
Query: 524 YLNDN 528
+L+ N
Sbjct: 401 WLHTN 405
Score = 146 bits (370), Expect = 2e-38
Identities = 74/432 (17%), Positives = 141/432 (32%), Gaps = 76/432 (17%)
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLS 216
L +P+ A++ +DL N + EL +L L+ L + V
Sbjct: 21 GLHQVPELPAHVN---YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-------- 69
Query: 217 NLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNEL 274
+ L +L+ L L +N +L L L L L
Sbjct: 70 --------------IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115
Query: 275 VNI---PDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSL 331
+ L +L L L N ++ + P ++
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ----------------------PASFFLNM 153
Query: 332 TSINNITLSRNKFTAYPSG-----GPTQFTSVYSIN-----FEHNQIDKIPYGIFSRAKN 381
+ + L+ NK + FT + + + G + +
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL 441
++ +++ N + + + + +S + + N K L
Sbjct: 214 ITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLP-RAIGHLTNLSY 499
+S +K DL ++K+ +L + +L++L L N++ + A LT+L
Sbjct: 273 EAS-----GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 500 LSVGENNLQSIPEEI-GTLENLHTLYLNDN--TCLNNIPFELALCSNLQIMSLDNCPLSQ 556
L++ +N L SI + L+ L L L+ N L + F NL+ ++LD L
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL--GLPNLKELALDTNQLKS 385
Query: 557 IPSEIVVGGPSL 568
+P I SL
Sbjct: 386 VPDGIFDRLTSL 397
Score = 93.3 bits (232), Expect = 2e-20
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 95 FLRCKEENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCL 152
F + + DLSKS I L SV T LE+L L N++ + +T+L L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 153 GLAENSLTSLPD-SLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHP 210
L++N L S+ NL +L VLDL +N + L + L +LK L L N++K+V
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 211 DI-QYLSNLSMLSMRDN 226
I L++L + + N
Sbjct: 389 GIFDRLTSLQKIWLHTN 405
Score = 53.6 bits (129), Expect = 9e-08
Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 31/154 (20%)
Query: 454 LDLEENKLESLPNE-IGFLKELQRLILQSNQLVSL--PRAIGHLTNLSYLSVGENNLQSI 510
+DL N + L L++LQ L ++ + L++L L + N +
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 511 PEEI-GTLENLHTLYLNDN----TCLNNIPF-------ELALCSN--------------- 543
L NL L L L+ F L L N
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154
Query: 544 -LQIMSLDNCPLSQIPSEIVVGGPSLIIRYLKMQ 576
++ L + I E ++ L++
Sbjct: 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 156 bits (396), Expect = 3e-43
Identities = 61/349 (17%), Positives = 124/349 (35%), Gaps = 63/349 (18%)
Query: 125 HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLN 183
HL + L +P + + L L N +T + NL+ L L L +NK++
Sbjct: 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 184 ELPMVV-YKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPE-LGELKNL 241
++ L L+ LYL N++K + + L L + +N+I ++ L +
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147
Query: 242 VTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP 301
+ ++L N L+ E + L+ +R++ +
Sbjct: 148 IVVELGTNPLKSSGIE--------------------NGAFQGMKKLSYIRIADTNI---- 183
Query: 302 ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSI 361
+++P GL SLT ++ L NK T + ++ +
Sbjct: 184 -------------------TTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKL 221
Query: 362 NFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSED 421
N I + G + +L ++++ +N L +P L + + L N IS + +
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281
Query: 422 -------IQNLVNLEVLVLSNNLLKKL---PSSIGNLRKLKCLDLEENK 460
+ + L +N ++ PS+ + + L K
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 150 bits (380), Expect = 6e-41
Identities = 67/364 (18%), Positives = 133/364 (36%), Gaps = 72/364 (19%)
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIR 229
LRV+ L ++P + +L L+ N+I + + L NL L + +NKI
Sbjct: 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 230 ELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINL 287
++ P L L L L+ N L+ELP+++ L L + NE+ + + L +
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147
Query: 288 TRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAY 347
+ L N L+S S + +G + ++ I ++ T
Sbjct: 148 IVVELGTNPLKS---------------------SGIENGAFQGMKKLSYIRIADTNITTI 186
Query: 348 PSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTE 407
P G S+ ++ + N+I K+ NL+K+ + N ++++
Sbjct: 187 PQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-------- 235
Query: 408 LNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNE 467
+ N +L L L+NN L K+P + + + ++ + L N + ++ +
Sbjct: 236 --------------LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281
Query: 468 IGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQ--SIPEEI-GTLENLHTLY 524
P + S +S+ N +Q I + +
Sbjct: 282 D----------------FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325
Query: 525 LNDN 528
L +
Sbjct: 326 LGNY 329
Score = 143 bits (363), Expect = 1e-38
Identities = 57/282 (20%), Positives = 112/282 (39%), Gaps = 20/282 (7%)
Query: 101 ENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENS 158
+ LDL + IT + + L +L L L NK++ + + L L L++N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 159 LTSLPDSLANLQQLRVLDLRHNKLNELPMVV-YKLTSLKILYLRFNRIKTVHPD---IQY 214
L LP+ + + L+ L + N++ ++ V L + ++ L N +K+ + Q
Sbjct: 112 LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 215 LSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNE 273
+ LS + + D I +P L +L L L N + ++ L L L N
Sbjct: 170 MKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 274 LVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSL------PDG 326
+ + + L N +L L L+ N+L VP L+ ++ + +S++ P G
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287
Query: 327 LLSSLTSINNITLSRNKFTAY--PSGGPTQFTSVYSINFEHN 366
+ S + ++L N + ++ +
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 131 bits (332), Expect = 3e-34
Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 14/247 (5%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
L +P L ++ L NK T G +++++ +N+I KI G F+
Sbjct: 43 LEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99
Query: 380 KNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLL 438
L ++ + N L LP + L EL + N+I+K+ + + L + V+ L N L
Sbjct: 100 VKLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
Query: 439 KKL---PSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLP-RAIGHL 494
K + ++KL + + + + ++P G L L L N++ + ++ L
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGL 215
Query: 495 TNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCP 553
NL+ L + N++ ++ +L L+LN+N L +P LA +Q++ L N
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274
Query: 554 LSQIPSE 560
+S I S
Sbjct: 275 ISAIGSN 281
Score = 105 bits (263), Expect = 5e-25
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 15/211 (7%)
Query: 365 HNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSEDI- 422
++K+P + L ++++N +T + L L L N+ISK+S
Sbjct: 40 DLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96
Query: 423 QNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQS 481
LV LE L LS N LK+LP + + L+ L + EN++ + + L ++ + L +
Sbjct: 97 APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 482 NQLVSL---PRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFE- 537
N L S A + LSY+ + + N+ +IP+ G +L L+L+ N + +
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGN-KITKVDAAS 211
Query: 538 LALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
L +NL + L +S + + + P L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Score = 64.3 bits (157), Expect = 3e-11
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPD 164
L LS +SI+ + HL EL+L NKL +P + + + L N+++++
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 165 S-------LANLQQLRVLDLRHNKLN--ELPMVVYK-LTSLKILYLRFNR 204
+ + L N + E+ ++ + + L +
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 58.1 bits (141), Expect = 2e-09
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 451 LKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQS 509
L+ + + LE +P ++ + L LQ+N++ + +L NL L + N +
Sbjct: 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 510 IPEEIGT-LENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
I L L LYL+ N L +P ++ LQ + + ++++ + G +
Sbjct: 91 ISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM 147
Query: 569 IIRYL 573
I+ L
Sbjct: 148 IVVEL 152
Score = 55.0 bits (133), Expect = 2e-08
Identities = 12/90 (13%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ-------IGYVTNLTCLGL 154
++ L L+ + + +P + +++ +YL+ N ++++ S + + + L
Sbjct: 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300
Query: 155 AENSLTSL---PDSLANLQQLRVLDLRHNK 181
N + P + + + L + K
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 146 bits (371), Expect = 9e-40
Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 18/256 (7%)
Query: 102 NILNLDLSKSSIT---HLPPSVEKLTHLEELYLYG-NKLA-SLPSQIGYVTNLTCLGLAE 156
+ NLDLS ++ +P S+ L +L LY+ G N L +P I +T L L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 157 NSLT-SLPDSLANLQQLRVLDLRHNKLN-ELPMVVYKLTSLKILYLRFNRIK-TVHPDIQ 213
+++ ++PD L+ ++ L LD +N L+ LP + L +L + NRI +
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 214 YLSNLS-MLSMRDNKIR-ELPPELGELKNLVTLDLAHNHLE-ELPKEIGNCTMLVTLDLQ 270
S L +++ N++ ++PP L NL +DL+ N LE + G+ + L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 271 HNELV-NIPDMLGNLINLTRLRLSYNRLE-SVPETLSKCVHLNEFNVEGCALS-SLPDGL 327
N L ++ +G NL L L NR+ ++P+ L++ L+ NV L +P G
Sbjct: 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287
Query: 328 LSSLTSINNITLSRNK 343
+L + + NK
Sbjct: 288 -GNLQRFDVSAYANNK 302
Score = 143 bits (363), Expect = 1e-38
Identities = 74/340 (21%), Positives = 121/340 (35%), Gaps = 87/340 (25%)
Query: 215 LSNLSMLSMRDNKIR---ELPPELGELKNLVTLDLAH-NHLE-ELPKEIGNCTMLVTLDL 269
++ L + + +P L L L L + N+L +P I T L L +
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 270 QHNELV-NIPDMLGNLINLTRLRLSYNRLE-SVPETLSKCVHLNEFNVEGCALSSLPDGL 327
H + IPD L + L L SYN L ++P ++S +L
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT------------- 155
Query: 328 LSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNM 387
N+ + G IP S
Sbjct: 156 -----------FDGNRIS-----GA------------------IPDSYGS---------- 171
Query: 388 KDNLLTSLPLDLGTWVGLTELNLGTNQIS-KLSEDIQNLVNLEVLVLSNNLLK-KLPSSI 445
+ L T + + N+++ K+ NL NL + LS N+L+
Sbjct: 172 ----FSKL---------FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217
Query: 446 GNLRKLKCLDLEENKLE-SLPNEIGFLKELQRLILQSNQLV-SLPRAIGHLTNLSYLSVG 503
G+ + + + L +N L L ++G K L L L++N++ +LP+ + L L L+V
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 504 ENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCS 542
NNL IP+ G L+ +N CL P L C+
Sbjct: 277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP--LPACT 313
Score = 134 bits (339), Expect = 3e-35
Identities = 64/264 (24%), Positives = 103/264 (39%), Gaps = 27/264 (10%)
Query: 139 LPSQIGYVTNLTCLGLAENSLT---SLPDSLANLQQLRVLDLRH-NKLN-ELPMVVYKLT 193
L + L L+ +L +P SLANL L L + N L +P + KLT
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 194 SLKILYLRFNRIK-TVHPDIQYLSNLSMLSMRDNKIR-ELPPELGELKNLVTLDLAHNHL 251
L LY+ + + + + L L N + LPP + L NLV + N +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 252 E-ELPKEIGNCTMLVT-LDLQHNELV-NIPDMLGNLINLTRLRLSYNRLE-SVPETLSKC 307
+P G+ + L T + + N L IP NL NL + LS N LE
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 308 VHLNEFNVEGCALS-SLPDGLLSSLTSINNITLSRNKFTAYPSGGP-----TQFTSVYSI 361
+ + ++ +L+ L + ++N + L N+ G TQ ++S+
Sbjct: 221 KNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIY-----GTLPQGLTQLKFLHSL 273
Query: 362 NFEHNQID-KIPY-GIFSRAKNLS 383
N N + +IP G R +
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSA 297
Score = 113 bits (285), Expect = 6e-28
Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 353 TQFTSVYSINFEHNQID---KIPYGIFSRAKNLSKVNM-KDNLLT-SLPLDLGTWVGLTE 407
TQ V +++ + IP + + L+ + + N L +P + L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 408 LNLGTNQIS-KLSEDIQNLVNLEVLVLSNNLLK-KLPSSIGNLRKLKCLDLEENKLE-SL 464
L + +S + + + + L L S N L LP SI +L L + + N++ ++
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 465 PNEIGFLKELQR-LILQSNQLV-SLPRAIGHLTNLSYLSVGENNLQ-SIPEEIGTLENLH 521
P+ G +L + + N+L +P +L NL+++ + N L+ G+ +N
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 522 TLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS-QIPSEI 561
++L N+ ++ ++ L NL + L N + +P +
Sbjct: 225 KIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264
Score = 109 bits (275), Expect = 1e-26
Identities = 67/326 (20%), Positives = 116/326 (35%), Gaps = 65/326 (19%)
Query: 251 LEELPKEIGNCTMLV----TLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLE---SVPE 302
L ++ K++GN T L T D + + + D + L LS L +P
Sbjct: 11 LLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70
Query: 303 TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSIN 362
+L+ +LN + INN+ GP
Sbjct: 71 SLANLPYLNFLY----------------IGGINNLV------------GP---------- 92
Query: 363 FEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT-SLPLDLGTWVGLTELNLGTNQIS-KLSE 420
IP I ++ L + + ++ ++P L L L+ N +S L
Sbjct: 93 --------IPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 421 DIQNLVNLEVLVLSNNLLK-KLPSSIGNLRKL-KCLDLEENKLE-SLPNEIGFLKELQRL 477
I +L NL + N + +P S G+ KL + + N+L +P L L +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202
Query: 478 ILQSNQLV-SLPRAIGHLTNLSYLSVGENNLQ-SIPEEIGTLENLHTLYLNDNTCLNNIP 535
L N L G N + + +N+L + + +G +NL+ L L +N +P
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261
Query: 536 FELALCSNLQIMSLDNCPLS-QIPSE 560
L L +++ L +IP
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQG 287
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 152 bits (384), Expect = 9e-40
Identities = 74/405 (18%), Positives = 141/405 (34%), Gaps = 30/405 (7%)
Query: 104 LNLDLSKSSITHLPPS----VEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSL 159
L+ + ++I+ +K N+ SL + + + L L +L
Sbjct: 13 LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRLNL 71
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLS 219
+SLPD+L Q+ VL++ N L LP + SL+ L NR+ T+ ++L
Sbjct: 72 SSLPDNL--PPQITVLEITQNALISLPEL---PASLEYLDACDNRLSTLPELP---ASLK 123
Query: 220 MLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD 279
L + +N++ LP L+ ++ +N L LP+ + L L +++N+L +P+
Sbjct: 124 HLDVDNNQLTMLPELPALLE---YINADNNQLTMLPELPTS---LEVLSVRNNQLTFLPE 177
Query: 280 MLGNLINLTRLRLSYNRLESVPETLSKCVHLNE----FNVEGCALSSLPDGLLSSLTSIN 335
+ +L L +S N LES+P + H E F ++ +P+ +L SL
Sbjct: 178 LPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL-SLDPTC 233
Query: 336 NITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL 395
I L N ++ +Q T+ + G + + +
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQ-PDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENK 292
Query: 396 PLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLD 455
D+ E N S + + + V+ + + +L+
Sbjct: 293 QSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELR--Q 350
Query: 456 LEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYL 500
L L+ LV + L
Sbjct: 351 QSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGAL 395
Score = 151 bits (383), Expect = 1e-39
Identities = 73/392 (18%), Positives = 137/392 (34%), Gaps = 40/392 (10%)
Query: 98 CKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAEN 157
C L L++ +++ LP ++ + L + N L SLP +L L +N
Sbjct: 56 CLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPELPA---SLEYLDACDN 110
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSN 217
L++LP+ A+L+ LD+ +N+L LP L+ + N++ + P++ ++
Sbjct: 111 RLSTLPELPASLKH---LDVDNNQLTMLP---ELPALLEYINADNNQLTML-PEL--PTS 161
Query: 218 LSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI 277
L +LS+R+N++ LP +L LD++ N LE LP
Sbjct: 162 LEVLSVRNNQLTFLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEET---------- 208
Query: 278 PDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNI 337
R NR+ +PE + +E LSS LS T+ +
Sbjct: 209 ---------EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259
Query: 338 TLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPL 397
R F+ T + + + S+ + + N ++
Sbjct: 260 HGPRIYFSMSDGQQNTLHRPLA--DAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD 317
Query: 398 DLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLE 457
L V + Q++ E + L + S + L +L
Sbjct: 318 RLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADA--TESCEDRVALTWNNLR 375
Query: 458 ENKLESLPNEIGFLKELQRLILQSNQLVSLPR 489
+ L +E F + L+ ++ L
Sbjct: 376 KTLLVHQASEGLFDNDTGALLSLGREMFRLEI 407
Score = 143 bits (362), Expect = 8e-37
Identities = 63/348 (18%), Positives = 111/348 (31%), Gaps = 75/348 (21%)
Query: 200 LRFNRIKTVHPDI----QYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELP 255
+N I + D ++ N+ L E + L L +L LP
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRLNLSSLP 75
Query: 256 KEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNV 315
+ + L++ N L+++P++ +L L NRL ++PE + HL
Sbjct: 76 DNLPPQ--ITVLEITQNALISLPELPASL---EYLDACDNRLSTLPELPASLKHL----- 125
Query: 316 EGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGI 375
+ ++NQ+ +P
Sbjct: 126 ----------------------------------------------DVDNNQLTMLPELP 139
Query: 376 FSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSN 435
L +N +N LT LP L L++ NQ++ L E ++L E L +S
Sbjct: 140 ----ALLEYINADNNQLTMLPELPT---SLEVLSVRNNQLTFLPELPESL---EALDVST 189
Query: 436 NLLKKLPSSIGNLRKLK----CLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAI 491
NLL+ LP+ + EN++ +P I L +IL+ N L S R
Sbjct: 190 NLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES 249
Query: 492 GHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELA 539
G S+ + + N +++
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297
Score = 142 bits (360), Expect = 2e-36
Identities = 59/304 (19%), Positives = 108/304 (35%), Gaps = 27/304 (8%)
Query: 265 VTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPETLSKC--VHLNEFNVEGCALS 321
++ + +N + D + L L +C +E + LS
Sbjct: 13 LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72
Query: 322 SLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKN 381
SLPD L +T + +++N + P S+ ++ N++ +P +
Sbjct: 73 SLPDNLPPQITVLE---ITQNALISLPE----LPASLEYLDACDNRLSTLPELP----AS 121
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL 441
L +++ +N LT LP L +N NQ++ L E +L EVL + NN L L
Sbjct: 122 LKHLDVDNNQLTMLPELPA---LLEYINADNNQLTMLPELPTSL---EVLSVRNNQLTFL 175
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQR----LILQSNQLVSLPRAIGHLTNL 497
P +L L D+ N LESLP + + N++ +P I L
Sbjct: 176 PELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPT 232
Query: 498 SYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQI 557
+ + +N L S E + + Y + + ++
Sbjct: 233 CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENK 292
Query: 558 PSEI 561
S++
Sbjct: 293 QSDV 296
Score = 48.4 bits (115), Expect = 5e-06
Identities = 26/203 (12%), Positives = 53/203 (26%), Gaps = 3/203 (1%)
Query: 96 LRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLA 155
EE + ++ ITH+P ++ L + L N L+S +
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261
Query: 156 ENSLTSLPDSLANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQY 214
S+ D N + D E V ++ N +
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD 321
Query: 215 LSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNEL 274
+ S ++ +L L + + + + L +L+ L
Sbjct: 322 TVSARNTSGFREQVAAWLEKLSASAEL--RQQSFAVAADATESCEDRVALTWNNLRKTLL 379
Query: 275 VNIPDMLGNLINLTRLRLSYNRL 297
V+ + L +
Sbjct: 380 VHQASEGLFDNDTGALLSLGREM 402
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 147 bits (372), Expect = 1e-39
Identities = 57/262 (21%), Positives = 106/262 (40%), Gaps = 18/262 (6%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
+ +LDLS + IT++ S ++ +L+ L L N + ++ + +L L L+ N L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 160 TSLP-DSLANLQQLRVLDLRHNKLNELP--MVVYKLTSLKILYLRFN-RIKTVHPDI-QY 214
++L L L L+L N L + LT L+IL + +
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 215 LSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHN 272
L+ L L + + ++ P+ L ++N+ L L L + + + L+L+
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 273 ELVNIP---------DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSL 323
+L + L ++++ L V + L++ L E L S+
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292
Query: 324 PDGLLSSLTSINNITLSRNKFT 345
PDG+ LTS+ I L N +
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314
Score = 139 bits (353), Expect = 6e-37
Identities = 48/274 (17%), Positives = 94/274 (34%), Gaps = 16/274 (5%)
Query: 216 SNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNE 273
+ L + +N+I + L NL L L N + + ++ + L LDL +N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 274 LVNIP-DMLGNLINLTRLRLSYNRLESVPE--TLSKCVHLNEFNVEGCA-LSSLPDGLLS 329
L N+ L +LT L L N +++ E S L V + + +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 330 SLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKD 389
LT + + + + +Y +V + Q + ++ + ++D
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 390 NLLTSLPL---------DLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKK 440
L + L + + + ++ + + + L L S N LK
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291
Query: 441 LPSSI-GNLRKLKCLDLEENKLESLPNEIGFLKE 473
+P I L L+ + L N + I +L
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 325
Score = 136 bits (344), Expect = 1e-35
Identities = 57/293 (19%), Positives = 114/293 (38%), Gaps = 27/293 (9%)
Query: 107 DLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP-D 164
S S+ +P + ++ L L N++ + + NL L L N + ++ D
Sbjct: 37 KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 165 SLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI--QYLSNLSML 221
S ++L L LDL +N L+ L + L+SL L L N KT+ +L+ L +L
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154
Query: 222 SMRDN-KIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIP 278
+ + ++ + L L L++ + L+ + + + L L + + +
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214
Query: 279 D-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNI 337
+ + ++ L L L++ + LS+ L + N+
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFS---------------ELSTGETNSLIKKFTFRNV 259
Query: 338 TLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
++ Q + + + F NQ+ +P GIF R +L K+ + N
Sbjct: 260 KITDESLFQVMKLL-NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 131 bits (330), Expect = 7e-34
Identities = 56/291 (19%), Positives = 109/291 (37%), Gaps = 23/291 (7%)
Query: 245 DLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPE- 302
+ L +P + + +LDL +N + I L +NL L L+ N + ++ E
Sbjct: 37 KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 303 TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTA-YPSGGPTQFTSVYSI 361
+ S L ++ LS+L L+S+ + L N + + + T + +
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154
Query: 362 NFEHN-QIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLS 419
+ KI F+ L ++ + + L S L + ++ L L Q L
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214
Query: 420 EDI-QNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLI 478
E ++E L L + L S +L + SL + +
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFS----------ELSTGETNSLIK----KFTFRNVK 260
Query: 479 LQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
+ L + + + ++ L L N L+S+P+ I L +L ++L+ N
Sbjct: 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 116 bits (292), Expect = 1e-28
Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 20/265 (7%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
L+S+P GL ++ S++ LS N+ T + + ++ ++ N I+ I FS
Sbjct: 43 LNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 380 KNLSKVNMKDNLLTSLPLDL-GTWVGLTELNLGTNQISKLSEDI--QNLVNLEVLVLSNN 436
+L +++ N L++L LT LNL N L E +L L++L + N
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159
Query: 437 -LLKKLPSSI-GNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLPR-AIG 492
K+ L L+ L+++ + L+S + ++ + LIL Q + L +
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219
Query: 493 HLTNLSYLSVGENNLQSIPEE---------IGTLENLHTLYLNDNTCLNNIPFELALCSN 543
+++ L + + +L + + + + D + L + L S
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISG 278
Query: 544 LQIMSLDNCPLSQIPSEIVVGGPSL 568
L + L +P I SL
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSL 303
Score = 99.0 bits (247), Expect = 8e-23
Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 13/195 (6%)
Query: 389 DNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-G 446
L S+P L + L+L N+I+ +S Q VNL+ LVL++N + +
Sbjct: 40 SGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97
Query: 447 NLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAI--GHLTNLSYLSV 502
+L L+ LDL N L +L + F L L L L N +L HLT L L V
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSW-FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
Query: 503 GENN-LQSIPEEI-GTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCPLSQIPS 559
G + I + L L L ++ + L + + L N+ + L +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215
Query: 560 EIVVGGPSLIIRYLK 574
V S+ L+
Sbjct: 216 IFVDVTSSVECLELR 230
Score = 28.2 bits (63), Expect = 8.2
Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTN 148
L+ S++ + +P + ++LT L++++L+ N +I Y++
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 325
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 146 bits (371), Expect = 1e-39
Identities = 58/298 (19%), Positives = 112/298 (37%), Gaps = 31/298 (10%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
+ LDL + I+ L + L HL L L NK++ + + + L L +++N L
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIK--TVHPDIQYLS 216
+P +L L L + N++ ++P V L ++ + + N ++ P
Sbjct: 115 VEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELV 275
L+ L + + K+ +P +L + L L L HN ++ + E + L L L HN++
Sbjct: 173 KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 276 NIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSI 334
I + L L L L L N+L VP L L + ++ + +
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--- 287
Query: 335 NNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID--KIPYGIFSRAKNLSKVNMKDN 390
G + I+ +N + ++ F + + +
Sbjct: 288 ---------------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 146 bits (370), Expect = 2e-39
Identities = 73/351 (20%), Positives = 129/351 (36%), Gaps = 68/351 (19%)
Query: 125 HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLN 183
HL + L ++P +I + T L L N ++ L D LQ L L L +NK++
Sbjct: 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 184 ELPMVV-YKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPE-LGELKNL 241
++ L L+ LY+ N + + P++ S+L L + DN+IR++P L+N+
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149
Query: 242 VTLDLAHNHLEELPKEIG--NCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLES 299
+++ N LE E G + L L + +L IP L L L +N++
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHNKI-- 205
Query: 300 VPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVY 359
++ L + + + L
Sbjct: 206 ---------------------QAIELEDLLRYSKLYRLGLG------------------- 225
Query: 360 SINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLS 419
HNQI I G S L ++++ +N L+ +P L L + L TN I+K+
Sbjct: 226 -----HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280
Query: 420 EDI-------QNLVNLEVLVLSNNLLKKL---PSSIGNLRKLKCLDLEENK 460
+ + L NN + P++ + + K
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 145 bits (369), Expect = 2e-39
Identities = 68/326 (20%), Positives = 124/326 (38%), Gaps = 43/326 (13%)
Query: 217 NLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKE-IGNCTMLVTLDLQHNELV 275
+L ++ D ++ +P E+ + LDL +N + EL K+ L L L +N++
Sbjct: 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 276 NIPD-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSI 334
I + L L +L +S N L +P L L E + + +P G+ S L ++
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNM 149
Query: 335 NNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTS 394
N I + N G F L+ + + + LT
Sbjct: 150 NCIEMGGNPLENSG----------------------FEPGAFDGL-KLNYLRISEAKLTG 186
Query: 395 LPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLK 452
+P DL L EL+L N+I + + L L L +N ++ + + L L+
Sbjct: 187 IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244
Query: 453 CLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLP-------RAIGHLTNLSYLSVGEN 505
L L+ NKL +P + LK LQ + L +N + + + +S+ N
Sbjct: 245 ELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304
Query: 506 NLQSIPEEIGT---LENLHTLYLNDN 528
+ + T + + + +
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 145 bits (367), Expect = 4e-39
Identities = 71/349 (20%), Positives = 124/349 (35%), Gaps = 66/349 (18%)
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPD-IQYLSNLSMLSMRDNKIR 229
LRV+ L +P + +L L+ N I + D + L +L L + +NKI
Sbjct: 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 230 ELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINL 287
++ + L+ L L ++ NHL E+P + + LV L + N + +P + L N+
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149
Query: 288 TRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAY 347
+ + N LE+ S G L +N + +S K T
Sbjct: 150 NCIEMGGNPLEN---------------------SGFEPGAFDGL-KLNYLRISEAKLTGI 187
Query: 348 PSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTE 407
P ++ ++ +HN+I I R L
Sbjct: 188 PKD---LPETLNELHLDHNKIQAIELEDLLRYSKL-----------------------YR 221
Query: 408 LNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPN 466
L LG NQI + L L L L NN L ++P+ + +L+ L+ + L N + +
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281
Query: 467 EI-------GFLKELQRLILQSNQLVSL---PRAIGHLTNLSYLSVGEN 505
+ L +N + P +T+ + G
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 128 bits (323), Expect = 5e-33
Identities = 64/279 (22%), Positives = 115/279 (41%), Gaps = 19/279 (6%)
Query: 293 SYNRLESVPETLS-----KCV-HLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTA 346
L+S+P T S C HL L ++P + T ++ L N +
Sbjct: 12 GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLD---LQNNDISE 68
Query: 347 YPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLT 406
+Y++ +N+I KI FS + L K+ + N L +P +L + L
Sbjct: 69 LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS--SLV 126
Query: 407 ELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSIGNLR--KLKCLDLEENKLES 463
EL + N+I K+ + + L N+ + + N L+ G KL L + E KL
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186
Query: 464 LPNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIPEEI-GTLENLH 521
+P + L L L N++ ++ + + L L +G N ++ I L L
Sbjct: 187 IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244
Query: 522 TLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSE 560
L+L++N L+ +P L LQ++ L ++++
Sbjct: 245 ELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282
Score = 98.9 bits (247), Expect = 8e-23
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 14/202 (6%)
Query: 381 NLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSED-IQNLVNLEVLVLSNNLLK 439
+L V D L ++P ++ T L+L N IS+L +D + L +L LVL NN +
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 440 KLPS-SIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNL 497
K+ + LRKL+ L + +N L +P + L L + N++ +P+ L N+
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149
Query: 498 SYLSVGENNLQSIPEEIGTLE--NLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLS 555
+ + +G N L++ E G + L+ L +++ L IP +L L + LD+ +
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQ 206
Query: 556 QIPSEIVVGGPSLIIRYLKMQG 577
I E ++ L L +
Sbjct: 207 AIELEDLLRYSKL--YRLGLGH 226
Score = 98.6 bits (246), Expect = 9e-23
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 16/212 (7%)
Query: 364 EHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSEDI 422
+ +P I L ++++N ++ L D L L L N+ISK+ E
Sbjct: 41 SDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97
Query: 423 -QNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGF--LKELQRLIL 479
L L+ L +S N L ++P ++ L L + +N++ +P + F L+ + + +
Sbjct: 98 FSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGV-FSGLRNMNCIEM 154
Query: 480 QSNQL--VSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFE 537
N L L+YL + E L IP+ E L+ L+L+ N + I E
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHNK-IQAIELE 211
Query: 538 -LALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
L S L + L + + I + + P+L
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243
Score = 53.1 bits (128), Expect = 1e-07
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-------GYVTNLTCLGL 154
+ L L + ++ +P + L L+ +YL+ N + + + L
Sbjct: 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301
Query: 155 AENSLTSL---PDSLANLQQLRVLDLRHNK 181
N + P + + + + K
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 146 bits (370), Expect = 2e-38
Identities = 53/249 (21%), Positives = 95/249 (38%), Gaps = 30/249 (12%)
Query: 101 ENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSL 159
N L+L +++I + L HLE L L N + +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE------------------- 115
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNELPMVV-YKLTSLKILYLRFNRIKTVHPDI-QYLSN 217
+ L L L+L N L +P L+ L+ L+LR N I+++ + +
Sbjct: 116 ---VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
Query: 218 LSMLSMRD-NKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELV 275
L L + + K+ + L NL L+L +++++P + L L++ N
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFP 231
Query: 276 NIP-DMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333
I L +L +L + +++ + L E N+ LSSLP L + L
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291
Query: 334 INNITLSRN 342
+ + L N
Sbjct: 292 LVELHLHHN 300
Score = 142 bits (361), Expect = 2e-37
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 34/273 (12%)
Query: 125 HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLN 183
++ L+ +P I +N L L EN++ + D+ +L L VL L N +
Sbjct: 55 QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112
Query: 184 ELPMVV-YKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPE-LGELKN 240
++ + L SL L L N + + +YLS L L +R+N I +P + +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
Query: 241 LVTLDLAH-NHLEELPKEI-GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLE 298
L+ LDL LE + + L L+L + ++P+ L L+ L L +S N
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFP 231
Query: 299 SVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTS 357
+ + L + V +S + L S+ + L+
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA----------------- 274
Query: 358 VYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
HN + +P+ +F+ + L ++++ N
Sbjct: 275 -------HNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 132 bits (334), Expect = 1e-33
Identities = 65/344 (18%), Positives = 108/344 (31%), Gaps = 101/344 (29%)
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIR 229
Q + L+E+P + ++ + L L N I+ + D ++L +L +L + N IR
Sbjct: 55 QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112
Query: 230 ELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLT 288
++ L +L TL+L N L +P L L
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIP----------------------SGAFEYLSKLR 150
Query: 289 RLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYP 348
L L N + S+P + + S+ + L
Sbjct: 151 ELWLRNNPI-----------------------ESIPSYAFNRVPSLMRLDLGEL------ 181
Query: 349 SGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTEL 408
+++ I G F NL +N+ + +P
Sbjct: 182 -----------------KKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------------ 212
Query: 409 NLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPS-SIGNLRKLKCLDLEENKLESLPNE 467
++ LV LE L +S N ++ S L LK L + +++ +
Sbjct: 213 ------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Query: 468 IGF--LKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQ 508
F L L L L N L SLP L L L + N
Sbjct: 261 A-FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 128 bits (323), Expect = 4e-32
Identities = 54/242 (22%), Positives = 93/242 (38%), Gaps = 12/242 (4%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
LS +P G+ S+ +N L N + + + N I +I G F+
Sbjct: 66 LSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122
Query: 380 KNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLS-NN 436
+L+ + + DN LT +P L EL L N I + + +L L L
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182
Query: 437 LLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHL 494
L+ + L LK L+L ++ +P + L L+ L + N + + L
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241
Query: 495 TNLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNC 552
++L L V + + I L +L L L N L+++P + L + L +
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300
Query: 553 PL 554
P
Sbjct: 301 PW 302
Score = 122 bits (307), Expect = 4e-30
Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 16/245 (6%)
Query: 333 SINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLL 392
+ + +R + P G P+ +N N I I F +L + + N +
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSNTRY---LNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 393 TSLPLDLGTWVGLT---ELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GN 447
+ + G + GL L L N ++ + + L L L L NN ++ +PS
Sbjct: 112 RQIEV--GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169
Query: 448 LRKLKCLDL-EENKLESLPNEI-GFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGEN 505
+ L LDL E KLE + L L+ L L + +P + L L L + N
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN 228
Query: 506 NLQSIPEE-IGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCPLSQIPSEIVV 563
+ I L +L L++ ++ ++ I ++L ++L + LS +P ++
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287
Query: 564 GGPSL 568
L
Sbjct: 288 PLRYL 292
Score = 63.2 bits (154), Expect = 9e-11
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 449 RKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNL 507
+ + L +P G + L L N + + HL +L L +G N++
Sbjct: 54 NQFSKVVCTRRGLSEVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 508 QSIPEEI-GTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCPLSQIPSEIVVGG 565
+ I L +L+TL L DN L IP S L+ + L N P+ IPS
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 566 PSLIIRYL 573
PSL+ L
Sbjct: 171 PSLMRLDL 178
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 145 bits (367), Expect = 3e-38
Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 30/249 (12%)
Query: 101 ENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSL 159
N L+L ++ I + + + L HLE L L N + ++
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE------------------- 104
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFNRIKTVHPDI-QYLSN 217
+ L L L+L N+L +P L+ LK L+LR N I+++ + +
Sbjct: 105 ---IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 218 LSMLSMRD-NKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELV 275
L L + + ++ + L NL L+LA +L E+P + L LDL N L
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLS 220
Query: 276 NIP-DMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333
I L++L +L + ++++ + L E N+ L+ LP L + L
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280
Query: 334 INNITLSRN 342
+ I L N
Sbjct: 281 LERIHLHHN 289
Score = 141 bits (358), Expect = 5e-37
Identities = 63/273 (23%), Positives = 109/273 (39%), Gaps = 34/273 (12%)
Query: 125 HLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLN 183
++ L +P I TN L L EN + + +S +L+ L +L L N +
Sbjct: 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 184 ELPMVV-YKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKN 240
+ + L +L L L NR+ T+ YLS L L +R+N I +P + +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 241 LVTLDLAH-NHLEELPKEI-GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLE 298
L LDL L + + + L L+L L IP+ L LI L L LS N L
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLS 220
Query: 299 SVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTS 357
++ + +HL + + + + +L S+ I L+
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA----------------- 263
Query: 358 VYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
HN + +P+ +F+ +L ++++ N
Sbjct: 264 -------HNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 131 bits (332), Expect = 2e-33
Identities = 57/276 (20%), Positives = 108/276 (39%), Gaps = 34/276 (12%)
Query: 240 NLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLE 298
+ +L E+P I T L+L N++ I + +L +L L+LS N +
Sbjct: 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 299 SVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTS 357
++ + +LN + L+++P+G L+ + + L N + PS + S
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 358 VYSINFEH-NQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQIS 416
+ ++ ++ I G F LS L LNL +
Sbjct: 162 LRRLDLGELKRLSYISEGAFE---GLSN--------------------LRYLNLAMCNLR 198
Query: 417 KLSEDIQNLVNLEVLVLSNNLLKKLPS-SIGNLRKLKCLDLEENKLESLPNEIGF--LKE 473
++ ++ L+ L+ L LS N L + S L L+ L + +++++ + F L+
Sbjct: 199 EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQS 256
Query: 474 LQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQ 508
L + L N L LP L +L + + N
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 124 bits (314), Expect = 4e-31
Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 16/244 (6%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
L +PDG+ ++ +N L N+ + + N I I G F+
Sbjct: 55 LREVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111
Query: 380 KNLSKVNMKDNLLTSLPLDLGTWVG---LTELNLGTNQISKLSEDI-QNLVNLEVLVLS- 434
NL+ + + DN LT++P G +V L EL L N I + + +L L L
Sbjct: 112 ANLNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 435 NNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR-AIG 492
L + L L+ L+L L +P + L +L L L N L ++ +
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 493 HLTNLSYLSVGENNLQSIPEE-IGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLD 550
L +L L + ++ +Q I L++L + L N L +P + +L+ + L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLH 287
Query: 551 NCPL 554
+ P
Sbjct: 288 HNPW 291
Score = 123 bits (310), Expect = 2e-30
Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 18/246 (7%)
Query: 333 SINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLL 392
+ + R P G T +N NQI I F ++L + + N +
Sbjct: 44 QFSKVICVRKNLREVPDGISTNTRL---LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 393 TSLPLDLGTWVGLT---ELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GN 447
++ + G + GL L L N+++ + L L+ L L NN ++ +PS
Sbjct: 101 RTIEI--GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
Query: 448 LRKLKCLDL-EENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGE 504
+ L+ LDL E +L + F L L+ L L L +P + L L L +
Sbjct: 159 IPSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSG 216
Query: 505 NNLQSIPEEI-GTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCPLSQIPSEIV 562
N+L +I L +L L++ + + I +L ++L + L+ +P ++
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275
Query: 563 VGGPSL 568
L
Sbjct: 276 TPLHHL 281
Score = 47.4 bits (113), Expect = 8e-06
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 26/121 (21%)
Query: 449 RKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNL 507
+ + L +P+ G + L L NQ+ + + HL +L L + N++
Sbjct: 43 NQFSKVICVRKNLREVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 508 QSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPS 567
++I G L +NL + L + L+ IP+ V
Sbjct: 101 RTIEI--GAFNGL---------------------ANLNTLELFDNRLTTIPNGAFVYLSK 137
Query: 568 L 568
L
Sbjct: 138 L 138
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 137 bits (348), Expect = 1e-36
Identities = 67/301 (22%), Positives = 105/301 (34%), Gaps = 60/301 (19%)
Query: 127 EELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLNEL 185
E+ L S+P+ I ++ T L L N L SLP L QL L L N L+
Sbjct: 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 186 ---PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPE--LGELKN 240
+ TSLK L L FN + T+ + L L L + + ++++ L+N
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 241 LVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVN--IPDMLGNLINLTRLRLSYNRL 297
L+ LD++H H I + L L + N +PD+ L NLT L LS +L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 298 ESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTS 357
L +SL+S+ + +S
Sbjct: 188 -----------------------EQLSPTAFNSLSSLQVLNMS----------------- 207
Query: 358 VYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL--GTWVGLTELNLGTNQI 415
HN + + +L ++ N + + L LNL N
Sbjct: 208 -------HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Query: 416 S 416
+
Sbjct: 261 A 261
Score = 137 bits (347), Expect = 2e-36
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 11/214 (5%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIG---YVTNLTCLGLAEN 157
+ L+L + + LP V +KLT L +L L N L+ T+L L L+ N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNELP--MVVYKLTSLKILYLRFNRIKTVHPDI-QY 214
+ ++ + L+QL LD +H+ L ++ V L +L L + + I
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 215 LSNLSMLSMRDNK-IRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNC-TMLVTLDLQH 271
LS+L +L M N P+ EL+NL LDL+ LE+L N + L L++ H
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 272 NELVNIPD-MLGNLINLTRLRLSYNRLESVPETL 304
N ++ L +L L S N + + +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Score = 136 bits (345), Expect = 2e-36
Identities = 64/274 (23%), Positives = 97/274 (35%), Gaps = 34/274 (12%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
+ + +T +P + + L L NKL SLP
Sbjct: 12 IRCNSKGLTSVPTGI--PSSATRLELESNKLQSLP----------------------HGV 47
Query: 166 LANLQQLRVLDLRHNKLNEL---PMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLS 222
L QL L L N L+ + TSLK L L FN + T+ + L L L
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107
Query: 223 MRDNKIRELPPE--LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVN--I 277
+ + ++++ L+NL+ LD++H H I + L L + N +
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 278 PDMLGNLINLTRLRLSYNRLESVPETLSKC-VHLNEFNVEGCALSSLPDGLLSSLTSINN 336
PD+ L NLT L LS +LE + T L N+ SL L S+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 337 ITLSRNKFTAYPSGGPTQF-TSVYSINFEHNQID 369
+ S N F +S+ +N N
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 126 bits (318), Expect = 1e-32
Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 81/320 (25%)
Query: 175 LDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPP 233
+ L +P + +S L L N+++++ + L+ L+ LS+ N +
Sbjct: 12 IRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 234 ELGE---LKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD--MLGNLINLT 288
+L LDL+ N + + L LD QH+ L + + + +L NL
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 289 RLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYP 348
L +S+ +G+ + L+S+ + ++ N F
Sbjct: 130 YLDISHTHT-----------------------RVAFNGIFNGLSSLEVLKMAGNSF---- 162
Query: 349 SGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTEL 408
+ IF+ +NL T L
Sbjct: 163 -------------------QENFLPDIFTELRNL-----------------------TFL 180
Query: 409 NLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPN 466
+L Q+ +LS +L +L+VL +S+N L + L L+ LD N + +
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 467 EI--GFLKELQRLILQSNQL 484
+ F L L L N
Sbjct: 241 QELQHFPSSLAFLNLTQNDF 260
Score = 125 bits (317), Expect = 2e-32
Identities = 60/297 (20%), Positives = 98/297 (32%), Gaps = 60/297 (20%)
Query: 243 TLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVP 301
+ L +P I + L+L+ N+L ++P + L LT+L LS N L
Sbjct: 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK- 67
Query: 302 ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSI 361
TS+ + LS N S
Sbjct: 68 --------------------GCCSQSDFGTTSLKYLDLSFNGVITMSSN----------- 96
Query: 362 NFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVG---LTELNLGTNQISKL 418
F + L ++ + + L + + ++ L L++
Sbjct: 97 --------------FLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVA 141
Query: 419 SEDI-QNLVNLEVLVLSNNLLKK--LPSSIGNLRKLKCLDLEENKLESLPNEI-GFLKEL 474
I L +LEVL ++ N ++ LP LR L LDL + +LE L L L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 475 QRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIPEEI--GTLENLHTLYLNDN 528
Q L + N SL L +L L N++ + ++ +L L L N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 124 bits (313), Expect = 6e-32
Identities = 53/249 (21%), Positives = 104/249 (41%), Gaps = 15/249 (6%)
Query: 339 LSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD 398
+ T+ P+G P+ S + E N++ +P+G+F + L+K+++ N L+
Sbjct: 14 CNSKGLTSVPTGIPS---SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70
Query: 399 LGTWVG---LTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSS--IGNLRKLKC 453
+ G L L+L N + +S + L LE L ++ LK++ +LR L
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130
Query: 454 LDLEENKLESLPNEI-GFLKELQRLILQSNQLVS--LPRAIGHLTNLSYLSVGENNLQSI 510
LD+ N I L L+ L + N LP L NL++L + + L+ +
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 511 PEEI-GTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
+L +L L ++ N ++ ++LQ++ + + + PS
Sbjct: 191 SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249
Query: 569 IIRYLKMQG 577
+ +L +
Sbjct: 250 -LAFLNLTQ 257
Score = 117 bits (295), Expect = 2e-29
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 9/180 (5%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQ--IGYVTNLTCLGLAENSL 159
++ LDLS + + + + L LE L + L + + NL L ++
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 160 TSLPD-SLANLQQLRVLDLRHNKLNE--LPMVVYKLTSLKILYLRFNRIKTVHPDI-QYL 215
+ L L VL + N E LP + +L +L L L +++ + P L
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 216 SNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI--GNCTMLVTLDLQHN 272
S+L +L+M N L L +L LD + NH+ K+ + L L+L N
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 134 bits (340), Expect = 8e-36
Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 31/253 (12%)
Query: 97 RCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLA 155
C E + + + +P + + ++L+GN+++ +P+ NLT L L
Sbjct: 7 VCYNEPKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64
Query: 156 ENSLTSL-PDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-Q 213
N L + + L L LDL N ++++V P
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSDN----------------------AQLRSVDPATFH 102
Query: 214 YLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQH 271
L L L + ++EL P L L L L N L+ LP + + L L L
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162
Query: 272 NELVNIPD-MLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLS 329
N + ++P+ L +L RL L NR+ V L + LS+LP L+
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 330 SLTSINNITLSRN 342
L ++ + L+ N
Sbjct: 223 PLRALQYLRLNDN 235
Score = 126 bits (318), Expect = 9e-33
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 16/219 (7%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
L ++P G+ ++ I L N+ + P+ ++ + N + +I F+
Sbjct: 23 LQAVPVGIPAASQRIF---LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79
Query: 380 KNLSKVNMKDNL-LTSLPLDLGTWVG---LTELNLGTNQISKLSEDI-QNLVNLEVLVLS 434
L ++++ DN L S+ T+ G L L+L + +L + + L L+ L L
Sbjct: 80 ALLEQLDLSDNAQLRSVDP--ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 435 NNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPR-A 490
+N L+ LP +L L L L N++ S+P F L L RL+L N++ + A
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHA 196
Query: 491 IGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
L L L + NNL ++P E L L L LNDN
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 118 bits (299), Expect = 3e-30
Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 8/227 (3%)
Query: 170 QQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKI 228
+ L +P+ + + + ++L NRI V + NL++L + N +
Sbjct: 11 EPKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68
Query: 229 RELPPE-LGELKNLVTLDLAHN-HLEELPKEI-GNCTMLVTLDLQHNELVNIP-DMLGNL 284
+ L L LDL+ N L + L TL L L + + L
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128
Query: 285 INLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNK 343
L L L N L+++P+ T +L + G +SS+P+ L S++ + L +N+
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 344 FTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ ++ N + +P + + L + + DN
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 114 bits (287), Expect = 2e-28
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 12/213 (5%)
Query: 364 EHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSEDI 422
+ +P GI + ++ + + N ++ +P LT L L +N ++++
Sbjct: 19 PQQGLQAVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 423 -QNLVNLEVLVLSNNL-LKKLPSSI-GNLRKLKCLDLEENKLESLPNEI-GFLKELQRLI 478
L LE L LS+N L+ + + L +L L L+ L+ L + L LQ L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 479 LQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIPF 536
LQ N L +LP L NL++L + N + S+PE L +L L L+ N + ++
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHP 194
Query: 537 E-LALCSNLQIMSLDNCPLSQIPSEIVVGGPSL 568
L + L LS +P+E + +L
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Score = 113 bits (285), Expect = 2e-28
Identities = 54/249 (21%), Positives = 87/249 (34%), Gaps = 31/249 (12%)
Query: 243 TLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVP 301
T L+ +P I + L N + ++P NLT L L N L +
Sbjct: 15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 302 E-TLSKCVHLNEFNVEG-CALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVY 359
+ L + ++ L S+ L ++ + L R G ++
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 360 SINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLS 419
+ + N + +P F N LT L L N+IS +
Sbjct: 133 YLYLQDNALQALPDDTFRDLGN-----------------------LTHLFLHGNRISSVP 169
Query: 420 EDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEI-GFLKELQR 476
E + L +L+ L+L N + + +L +L L L N L +LP E L+ LQ
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229
Query: 477 LILQSNQLV 485
L L N V
Sbjct: 230 LRLNDNPWV 238
Score = 100 bits (251), Expect = 8e-24
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 389 DNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-G 446
L ++P+ + + L N+IS + + NL +L L +N+L ++ ++
Sbjct: 20 QQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77
Query: 447 NLRKLKCLDLEEN-KLESLPNEI-GFLKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVG 503
L L+ LDL +N +L S+ L L L L L L L L YL +
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 504 ENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIPFELAL--CSNLQIMSLDNCPLSQIPSE 560
+N LQ++P++ L NL L+L+ N ++++P E A +L + L ++ +
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNR-ISSVP-ERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 561 IVVGGPSLIIRYL 573
L+ YL
Sbjct: 196 AFRDLGRLMTLYL 208
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 132 bits (335), Expect = 7e-35
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 9/237 (3%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
N + + KS++T L + L +G + ++ + Y+ NL L L +N +T
Sbjct: 19 ANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQIT 76
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
L L NL ++ L+L N L + + L S+K L L +I V + LSNL +
Sbjct: 77 DLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQV 133
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
L + N+I + P L L NL L + + + +L + N + L TL N++ +I
Sbjct: 134 LYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP- 190
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNI 337
L +L NL + L N++ V L+ +L + +++ P ++L N +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246
Score = 119 bits (301), Expect = 3e-30
Identities = 56/286 (19%), Positives = 116/286 (40%), Gaps = 13/286 (4%)
Query: 111 SSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQ 170
++I + P L + ++ + + +Q +T L +T++ + L
Sbjct: 7 TAINVIFP-DPALANAIKIAAGKSNVTDTVTQADL-DGITTLSAFGTGVTTIE-GVQYLN 63
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRE 230
L L+L+ N++ +L + LT + L L N +K V I L ++ L + +I +
Sbjct: 64 NLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITD 121
Query: 231 LPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRL 290
+ P L L NL L L N + + + T L L + + ++ ++ L NL LT L
Sbjct: 122 VTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL 178
Query: 291 RLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSG 350
+ N++ + L+ +L E +++ +S + L++ +++ +TL+ T P
Sbjct: 179 KADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF 235
Query: 351 GPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP 396
+ I S + N+ NL + +
Sbjct: 236 YNNNLVVPNVVK--GPSGAPIAPATISDNGTYASPNLTWNLTSFIN 279
Score = 115 bits (290), Expect = 9e-29
Identities = 58/246 (23%), Positives = 119/246 (48%), Gaps = 16/246 (6%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ I L + +T + V+ L +L L L N++ L + +T +T L L+ N L
Sbjct: 41 DGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK 98
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
++ ++A LQ ++ LDL ++ ++ + L++L++LYL N+I + P + L+NL
Sbjct: 99 NV-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQY 155
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
LS+ + ++ +L P L L L TL N + ++ + + L+ + L++N++ ++
Sbjct: 156 LSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-P 212
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSI-NNITL 339
L N NL + L+ + + P + + + + P G + +I +N T
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNLVVPN-------VVKGPSGAPIAPATISDNGTY 265
Query: 340 SRNKFT 345
+ T
Sbjct: 266 ASPNLT 271
Score = 114 bits (286), Expect = 3e-28
Identities = 58/301 (19%), Positives = 115/301 (38%), Gaps = 35/301 (11%)
Query: 166 LANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD 225
L + + + + L + L + T+ +QYL+NL L ++D
Sbjct: 15 DPALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKD 72
Query: 226 NKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLI 285
N+I +L P L L + L+L+ N L+ + I + TLDL ++ ++ L L
Sbjct: 73 NQITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP-LAGLS 129
Query: 286 NLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345
NL L L N++ ++ L+ +L ++ +S L L++L+ + +
Sbjct: 130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD----- 181
Query: 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGL 405
N+I I + NL +V++K+N ++ + L L
Sbjct: 182 -------------------DNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNL 219
Query: 406 TELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLP 465
+ L I+ N + + +V + P++I + +L N +
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFIN 279
Query: 466 N 466
N
Sbjct: 280 N 280
Score = 108 bits (271), Expect = 3e-26
Identities = 53/310 (17%), Positives = 114/310 (36%), Gaps = 36/310 (11%)
Query: 203 NRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCT 262
I + PD L+N ++ + + + +L + TL + + +
Sbjct: 7 TAINVIFPD-PALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GVQYLN 63
Query: 263 MLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSS 322
L+ L+L+ N++ ++ L NL +T L LS N L++V ++ + ++ ++
Sbjct: 64 NLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITD 121
Query: 323 LPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNL 382
+ L+ L+++ + L N+ T + NL
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNISP--------------------------LAGLTNL 153
Query: 383 SKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLP 442
+++ + ++ L L LT L N+IS +S + +L NL + L NN + +
Sbjct: 154 QYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV- 210
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSV 502
S + N L + L + + P + ++ + P I + ++
Sbjct: 211 SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270
Query: 503 GENNLQSIPE 512
N I
Sbjct: 271 TWNLTSFINN 280
Score = 105 bits (263), Expect = 4e-25
Identities = 41/250 (16%), Positives = 98/250 (39%), Gaps = 13/250 (5%)
Query: 281 LGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340
L N ++ + + T + + + G ++++ + L ++ + L
Sbjct: 15 DPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71
Query: 341 RNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLG 400
N+ T T + + N + + + +++ +++ +T + L
Sbjct: 72 DNQITDLA--PLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVT-PLA 126
Query: 401 TWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENK 460
L L L NQI+ +S + L NL+ L + N + L + + NL KL L ++NK
Sbjct: 127 GLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNK 184
Query: 461 LESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGT-LEN 519
+ + + L L + L++NQ+ + + + +NL +++ + + P L
Sbjct: 185 ISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFYNNNLVV 242
Query: 520 LHTLYLNDNT 529
+ +
Sbjct: 243 PNVVKGPSGA 252
Score = 82.0 bits (203), Expect = 2e-17
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS 161
+I LDL+ + IT + P + L++L+ LYL N++ ++ + +TNL L + ++
Sbjct: 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD 165
Query: 162 LPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSML 221
L LANL +L L NK++++ + L +L ++L+ N+I V P + SNL ++
Sbjct: 166 L-TPLANLSKLTTLKADDNKISDISPLA-SLPNLIEVHLKNNQISDVSP-LANTSNLFIV 222
Query: 222 SMRDNKIRELPPELGELKNLVTLDLAHNHLEEL--PKEIGNCTMLVTLDLQHNELVNIPD 279
++ + I P NLV ++ P I + + +L N I +
Sbjct: 223 TLTNQTITNQPVF--YNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280
Score = 33.9 bits (78), Expect = 0.11
Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
N++ + L + I+ + P + ++L + L + + P + + +
Sbjct: 195 PNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVY 190
P ++++ +L N + + V Y
Sbjct: 254 IAPATISDNGTYASPNLTWNLTSFINNVSY 283
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 128 bits (323), Expect = 2e-33
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 9/209 (4%)
Query: 324 PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
P +S + S + + TA P P ++ N + L+
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 384 KVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPS 443
++N+ LT L +D L L+L NQ+ L Q L L VL +S N L LP
Sbjct: 59 QLNLDRAELTKLQVDGTL-PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 444 SI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAI-GHLTNLSY 499
L +L+ L L+ N+L++LP + +L++L L +N L LP + L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGL-LTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 500 LSVGENNLQSIPEEIGTLENLHTLYLNDN 528
L + EN+L +IP+ L +L+ N
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 120 bits (303), Expect = 9e-31
Identities = 62/195 (31%), Positives = 87/195 (44%), Gaps = 7/195 (3%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
++ K ++T LPP + L+L N L + T LT L L LT L
Sbjct: 14 EVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
Query: 164 DSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLS 222
L L LDL HN+L LP++ L +L +L + FNR+ ++ + L L L
Sbjct: 72 -VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 223 MRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIPDM 280
++ N+++ LPP L L L LA+N+L ELP + L TL LQ N L IP
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 281 LGNLINLTRLRLSYN 295
L L N
Sbjct: 191 FFGSHLLPFAFLHGN 205
Score = 119 bits (299), Expect = 4e-30
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 7/184 (3%)
Query: 123 LTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNK 181
+ E+ L +LP + + T L L+EN L + +L +L L+L +
Sbjct: 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 182 LNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPEL-GELKN 240
L +L V L L L L N+++++ Q L L++L + N++ LP L
Sbjct: 67 LTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 241 LVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLE 298
L L L N L+ LP + L L L +N L +P +L L NL L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 299 SVPE 302
++P+
Sbjct: 186 TIPK 189
Score = 116 bits (293), Expect = 2e-29
Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 5/175 (2%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ L LS++ + + T L +L L +L L + L L L+ N L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-LPVLGTLDLSHNQLQ 90
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSNL 218
SLP L L VLD+ N+L LP+ L L+ LYL+ N +KT+ P + L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 219 SMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHN 272
LS+ +N + ELP L L+NL TL L N L +PK +L L N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 96.7 bits (241), Expect = 2e-22
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 4/200 (2%)
Query: 215 LSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNE 273
+++ ++ + LPP+L K+ L L+ N L T L L+L E
Sbjct: 9 VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 274 LVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333
L + + G L L L LS+N+L+S+P L +V L+SLP G L L
Sbjct: 67 LTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
+ + L N+ P G T + ++ +N + ++P G+ + +NL + +++N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 394 SLPLDLGTWVGLTELNLGTN 413
++P L L N
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205
Score = 89.4 bits (222), Expect = 6e-20
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 405 LTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLES 463
E+N ++ L D+ + +L LS NLL + +L L+L+ +L
Sbjct: 12 HLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
Query: 464 LPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGT-LENLHT 522
L G L L L L NQL SLP L L+ L V N L S+P L L
Sbjct: 70 LQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 523 LYLNDNTCLNNIPFEL-ALCSNLQIMSLDNCPLSQIPSEI 561
LYL N L +P L L+ +SL N L+++P+ +
Sbjct: 129 LYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 126 bits (318), Expect = 6e-33
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
+ NLDLS + + HL L+ L L ++ ++ +++L+ L L N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 160 TSLP-DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPD--IQYL 215
SL + + L L+ L L L L +LK L + N I++ L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 216 SNLSMLSMRDNKIRELPPE----LGELKNL-VTLDLAHNHLEELPKEIGNCTMLVTLDLQ 270
+NL L + NKI+ + L ++ L ++LDL+ N + + L L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208
Query: 271 HNELVNIPD-MLGNLINLTRLRLSYN 295
N+L ++PD + L +L ++ L N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 122 bits (308), Expect = 2e-31
Identities = 59/229 (25%), Positives = 89/229 (38%), Gaps = 32/229 (13%)
Query: 124 THLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLN 183
+ L L N L L S + +L+VLDL ++
Sbjct: 28 FSTKNLDLSFNPLRHLG----------------------SYSFFSFPELQVLDLSRCEIQ 65
Query: 184 ELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKN 240
+ Y L+ L L L N I+++ LS+L L + + L G LK
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 241 LVTLDLAHNHLEELPKE--IGNCTMLVTLDLQHNELVNIP-DMLGNLINLT----RLRLS 293
L L++AHN ++ N T L LDL N++ +I L L + L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 294 YNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRN 342
N + + K + L E ++ L S+PDG+ LTS+ I L N
Sbjct: 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 114 bits (287), Expect = 1e-28
Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 19/216 (8%)
Query: 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQISKLSEDI-QNLVNL 428
IP + KNL ++ N L L ++ L L+L +I + + Q+L +L
Sbjct: 22 IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 429 EVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVS 486
L+L+ N ++ L L L+ L E L SL N G LK L+ L + N + S
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 487 LPR--AIGHLTNLSYLSVGENNLQSIPEEIGTLENLH-------TLYLNDNTCLNNIPFE 537
+LTNL +L + N +QSI L LH +L L+ N +N I
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLN-PMNFIQPG 195
Query: 538 LALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYL 573
L+ ++LD L +P I SL +L
Sbjct: 196 AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231
Score = 110 bits (276), Expect = 4e-27
Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 32/229 (13%)
Query: 286 NLTRLRLSYNRLESVPET-LSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKF 344
+ L LS+N L + L ++ C + ++ DG SL+ ++ + L+ N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 345 TAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVG 404
+ G + +S+ + + + L +
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-------------LKT---------- 125
Query: 405 LTELNLGTNQISKLSED--IQNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKC----LDLE 457
L ELN+ N I NL NLE L LS+N ++ + + L ++ LDL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 458 ENKLESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGEN 505
N + + L+ L L +NQL S+P LT+L + + N
Sbjct: 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 95.0 bits (237), Expect = 6e-22
Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 28/187 (14%)
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLR 449
+P +L L+L N + L + L+VL LS ++ + +L
Sbjct: 19 FYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 450 KLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNL 507
L L L N ++SL L LQ+L+ L SL IGHL L L+V N +
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 508 QSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGGPS 567
QS NL +NL+ + L + + I +
Sbjct: 137 QSFKLP-EYFSNL---------------------TNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 568 LIIRYLK 574
+ + L
Sbjct: 175 MPLLNLS 181
Score = 59.2 bits (144), Expect = 7e-10
Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 6/119 (5%)
Query: 458 ENKLESLPNEIGFLKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSIPEEI-G 515
E +P+ + + L L N L L + L L + +Q+I +
Sbjct: 16 ELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 516 TLENLHTLYLNDNTCLNNIPFEL-ALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYL 573
+L +L TL L N + ++ + S+LQ + L+ + + + +L +
Sbjct: 74 SLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 125 bits (317), Expect = 1e-32
Identities = 71/217 (32%), Positives = 100/217 (46%), Gaps = 11/217 (5%)
Query: 319 ALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSR 378
AL G+ S + N++ S K TA PS P + + N++ +P F R
Sbjct: 3 ALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLD---LQSNKLSSLPSKAFHR 59
Query: 379 AKNLSKVNMKDNLLTSLPLDL-GTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNN 436
L + + DN L +LP + L L + N++ L + LVNL L L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 437 LLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPR-AIG 492
LK LP + +L KL L L N+L+SLP + F L L+ L L +NQL +P A
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV-FDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 493 HLTNLSYLSVGENNLQSIPEEIGT-LENLHTLYLNDN 528
LT L L + N L+ +PE LE L L L +N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 115 bits (291), Expect = 3e-29
Identities = 67/214 (31%), Positives = 107/214 (50%), Gaps = 9/214 (4%)
Query: 366 NQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QN 424
+ K G+ S N + V+ LT++P ++ +L+L +N++S L
Sbjct: 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHR 59
Query: 425 LVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSN 482
L L +L L++N L+ LP+ I L+ L+ L + +NKL++LP + L L L L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 483 QLVSLPRAI-GHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIPFEL-A 539
QL SLP + LT L+YLS+G N LQS+P+ + L +L L L +N L +P
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFD 178
Query: 540 LCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYL 573
+ L+ + LDN L ++P L + L
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Score = 111 bits (280), Expect = 1e-27
Identities = 65/202 (32%), Positives = 108/202 (53%), Gaps = 9/202 (4%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
N ++D S +T +P ++ ++L L NKL+SLPS+ +T L L L +N L
Sbjct: 16 NNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 160 TSLPDSL-ANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPDI-QYLS 216
+LP + L+ L L + NKL LP+ V +L +L L L N++K++ P + L+
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 217 NLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNEL 274
L+ LS+ N+++ LP + +L +L L L +N L+ +P+ T L TL L +N+L
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 275 VNIPD-MLGNLINLTRLRLSYN 295
+P+ +L L L+L N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
Score = 97.4 bits (243), Expect = 7e-23
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 6/201 (2%)
Query: 240 NLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLE 298
N ++D + L +P I LDLQ N+L ++P L L L L+ N+L+
Sbjct: 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 299 SVPETL-SKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTS 357
++P + + +L V L +LP G+ L ++ + L RN+ + P T
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 358 VYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVG-LTELNLGTNQIS 416
+ ++ +N++ +P G+F + +L ++ + +N L +P + L L L NQ+
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 417 KLSEDI-QNLVNLEVLVLSNN 436
++ E +L L++L L N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215
Score = 95.4 bits (238), Expect = 4e-22
Identities = 58/245 (23%), Positives = 96/245 (39%), Gaps = 51/245 (20%)
Query: 126 LEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS-LANLQQLRVLDLRHNKLNE 184
+ KL ++PS I + L L N L+SLP L +LR+L L NKL
Sbjct: 18 KNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75
Query: 185 LPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNL 241
LP ++ +L +L+ L++ N+++ + + L NL+ L + N+++ LPP + L L
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 242 VTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVP 301
L L +N L+ LP + L +L LRL N+L
Sbjct: 136 TYLSLGYNELQSLP----------------------KGVFDKLTSLKELRLYNNQL---- 169
Query: 302 ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSI 361
+P+G LT + + L N+ P G + +
Sbjct: 170 -------------------KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Query: 362 NFEHN 366
+ N
Sbjct: 211 QLQEN 215
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 125 bits (314), Expect = 2e-30
Identities = 69/293 (23%), Positives = 111/293 (37%), Gaps = 9/293 (3%)
Query: 82 KEPIQADLNIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPS 141
E I I++ F + +L K S+T +L ++++ + + S+
Sbjct: 2 GETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-Q 59
Query: 142 QIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLR 201
I Y+ N+T L L N LT + L NL+ L L L NK+ +L + L LK L L
Sbjct: 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLE 117
Query: 202 FNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNC 261
N I ++ + +L L L + +NKI ++ L L L TL L N + ++ +
Sbjct: 118 HNGISDING-LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGL 174
Query: 262 TMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRL-ESVPETLSKCVHLNEFNVEGCAL 320
T L L L N + ++ L L NL L L S V N +L
Sbjct: 175 TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
Query: 321 SSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPY 373
+ N+ +FT S Q ++ + P
Sbjct: 234 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286
Score = 121 bits (305), Expect = 2e-29
Identities = 63/268 (23%), Positives = 117/268 (43%), Gaps = 9/268 (3%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+I + + S I + ++ L ++ +L+L GNKL + + + NL L L EN +
Sbjct: 43 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIK 100
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
L SL +L++L+ L L HN ++++ + L L+ LYL N+I + + L+ L
Sbjct: 101 DL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITV-LSRLTKLDT 157
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNI-PD 279
LS+ DN+I ++ P L L L L L+ NH+ +L + + L L+L E +N +
Sbjct: 158 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPIN 215
Query: 280 MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITL 339
NL+ ++ + L + PE +S + NV+ + +
Sbjct: 216 HQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKA 274
Query: 340 SRNKFTAYPSGGPTQFTSVYSINFEHNQ 367
+T Y ++ +
Sbjct: 275 KARFHGRVTQPLKEVYTVSYDVDGTVIK 302
Score = 114 bits (287), Expect = 4e-27
Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 11/243 (4%)
Query: 154 LAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQ 213
+ + + +L+ + + +L S+ + + IK+V IQ
Sbjct: 6 TVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQ 62
Query: 214 YLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNE 273
YL N++ L + NK+ ++ P L LKNL L L N +++L + + L +L L+HN
Sbjct: 63 YLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG 120
Query: 274 LVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333
+ +I L +L L L L N++ + LS+ L+ ++E +S + L+ LT
Sbjct: 121 ISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 176
Query: 334 INNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT 393
+ N+ LS+N + ++ + + P S + V D L
Sbjct: 177 LQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234
Query: 394 SLP 396
+
Sbjct: 235 TPE 237
Score = 110 bits (277), Expect = 7e-26
Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 11/225 (4%)
Query: 328 LSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNM 387
+ L + T + + S+ I ++ I + N++K+ +
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFL 72
Query: 388 KDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGN 447
N LT + L L L L N+I L +++L L+ L L +N + + + + +
Sbjct: 73 NGNKLTDIK-PLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVH 129
Query: 448 LRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNL 507
L +L+ L L NK+ + + L +L L L+ NQ+ + + LT L L + +N++
Sbjct: 130 LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHI 187
Query: 508 QSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNL-QIMSLDN 551
+ + L+NL L L CLN + + + D
Sbjct: 188 SDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231
Score = 106 bits (266), Expect = 2e-24
Identities = 57/319 (17%), Positives = 108/319 (33%), Gaps = 60/319 (18%)
Query: 195 LKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEEL 254
+ IK + PD + +++ + + EL ++ + ++ ++ +
Sbjct: 1 MGETITVSTPIKQIFPD-DAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58
Query: 255 PKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFN 314
+ I + L L N+L +I L NL NL L L N+++ + +L L +
Sbjct: 59 -QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLS 115
Query: 315 VEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYG 374
+E +S + L L + ++ L +N+I I
Sbjct: 116 LEHNGISDING--LVHLPQLESLYLG------------------------NNKITDIT-- 147
Query: 375 IFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLS 434
L L L+L NQIS + + L L+ L LS
Sbjct: 148 -----------------------VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLS 183
Query: 435 NNLLKKLPSSIGNLRKLKCLDLEENKLESL-PNEIGFLKELQRLILQSNQLVSLPRAIGH 493
N + L ++ L+ L L+L + + N L + LV+ P I
Sbjct: 184 KNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISD 241
Query: 494 LTNLSYLSVGENNLQSIPE 512
+ +V + + E
Sbjct: 242 DGDYEKPNVKWHLPEFTNE 260
Score = 89.8 bits (222), Expect = 5e-19
Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 8/178 (4%)
Query: 382 LSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL 441
+ + + + + + NL ++ L +++ ++ +N+ +K +
Sbjct: 1 MGETITVSTPIKQIF-PDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV 58
Query: 442 PSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLS 501
I L + L L NKL + + LK L L L N++ L ++ L L LS
Sbjct: 59 -QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115
Query: 502 VGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPS 559
+ N + I + L L +LYL +N + +I L+ + L +SL++ +S I
Sbjct: 116 LEHNGISDI-NGLVHLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQISDIVP 170
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 115 bits (291), Expect = 5e-29
Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 9/235 (3%)
Query: 111 SSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQ 170
+ I + + + L + +Q + ++ + + + S+ + L
Sbjct: 12 TPIKQIFS-DDAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV-QGIQYLP 68
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRE 230
+ L L NKL ++ + L +L L+L N++K + ++ L L LS+ N I +
Sbjct: 69 NVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISD 126
Query: 231 LPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRL 290
+ L L L +L L +N + ++ + T L TL L+ N++ +I L L L L
Sbjct: 127 ING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 183
Query: 291 RLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345
LS N + + L+ +L+ + + P S+L N + +
Sbjct: 184 YLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237
Score = 115 bits (290), Expect = 6e-29
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 18/247 (7%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ +L K S+T +L ++++ + + S+ I Y+ N+T L L N LT
Sbjct: 24 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT 81
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
+ LANL+ L L L NK+ +L + L LK L L N I ++ + +L L
Sbjct: 82 DIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDING-LVHLPQLES 138
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
L + +NKI ++ L L L TL L N + ++ + T L L L N + ++
Sbjct: 139 LYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA- 195
Query: 281 LGNLINLTRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSI-NNIT 338
L L NL L L + P S V N DG L + I ++
Sbjct: 196 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK--------NTDGSLVTPEIISDDGD 247
Query: 339 LSRNKFT 345
+
Sbjct: 248 YEKPNVK 254
Score = 104 bits (261), Expect = 4e-25
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 10/230 (4%)
Query: 166 LANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRD 225
+ +L+ + + +L S+ + + IK+V IQYL N++ L +
Sbjct: 20 DDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNG 77
Query: 226 NKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLI 285
NK+ ++ P L LKNL L L N +++L + + L +L L+HN + +I L +L
Sbjct: 78 NKLTDIKP-LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLP 134
Query: 286 NLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345
L L L N++ + LS+ L+ ++E +S + L+ LT + N+ LS+N +
Sbjct: 135 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191
Query: 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL 395
++ + + P S + V D L +
Sbjct: 192 DLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
Score = 99.7 bits (249), Expect = 2e-23
Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 10/230 (4%)
Query: 328 LSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNM 387
+ L + T + S+ I ++ I + N++K+ +
Sbjct: 20 DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75
Query: 388 KDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGN 447
N LT + L L L L N++ L +++L L+ L L +N + + + + +
Sbjct: 76 NGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVH 132
Query: 448 LRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNL 507
L +L+ L L NK+ + + L +L L L+ NQ+ + + LT L L + +N++
Sbjct: 133 LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHI 190
Query: 508 QSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQI 557
+ + L+NL L L CLN + + + L
Sbjct: 191 SDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
Score = 99.0 bits (247), Expect = 3e-23
Identities = 57/316 (18%), Positives = 107/316 (33%), Gaps = 60/316 (18%)
Query: 198 LYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKE 257
IK + D + +++ + + EL ++ + ++ ++ + +
Sbjct: 7 TITVPTPIKQIFSD-DAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QG 63
Query: 258 IGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEG 317
I + L L N+L +I L NL NL L L N+++ + +L L ++E
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEH 121
Query: 318 CALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFS 377
+S + L L + ++ L +N+I I
Sbjct: 122 NGISDING--LVHLPQLESLYLG------------------------NNKITDIT----- 150
Query: 378 RAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNL 437
L L L+L NQIS + + L L+ L LS N
Sbjct: 151 --------------------VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNH 189
Query: 438 LKKLPSSIGNLRKLKCLDLEENKLESLP-NEIGFLKELQRLILQSNQLVSLPRAIGHLTN 496
+ L ++ L+ L L+L + + P N L + LV+ P I +
Sbjct: 190 ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGD 247
Query: 497 LSYLSVGENNLQSIPE 512
+V + + E
Sbjct: 248 YEKPNVKWHLPEFTNE 263
Score = 77.0 bits (190), Expect = 9e-16
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 7/172 (4%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS 161
N+ L L ++ + L ++ L L+ L L N ++ + + ++ L L L N +T
Sbjct: 91 NLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITD 148
Query: 162 LPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSML 221
+ L+ L +L L L N+++++ + LT L+ LYL N I + + L NL +L
Sbjct: 149 I-TVLSRLTKLDTLSLEDNQISDIVPLA-GLTKLQNLYLSKNHISDLRA-LAGLKNLDVL 205
Query: 222 SMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHN 272
+ + P L T+ L P+ I + +++ +
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKPNVKWH 256
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 109 bits (274), Expect = 6e-27
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 15/215 (6%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
PD + N L + T + S+ I ++ I +
Sbjct: 10 KQIFPDDAFAETIKAN---LKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQ--GIQYL 62
Query: 380 KNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLL 438
N+ + + N L + L LT L L NQ+ L + L NL+ LVL N L
Sbjct: 63 PNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 439 KKLPSSIGN-LRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAI-GHL 494
+ LP + + L L L+L N+L+SLP + F L L L L NQL SLP + L
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 495 TNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
T L L + +N L+S+P+ + L +L ++L+DN
Sbjct: 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 109 bits (274), Expect = 7e-27
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 11/193 (5%)
Query: 340 SRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDL 399
S +P + N + + + ++ ++ ++ + S+ +
Sbjct: 6 STPIKQIFPDDAFAETIKA---NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GI 59
Query: 400 GTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEE 458
+ L LG N++ +S ++ L NL L+L+ N L+ LP+ + L LK L L E
Sbjct: 60 QYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 459 NKLESLPNEI-GFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIPEEI-G 515
N+L+SLP+ + L L L L NQL SLP+ + LTNL+ L + N LQS+PE +
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 516 TLENLHTLYLNDN 528
L L L L N
Sbjct: 179 KLTQLKDLRLYQN 191
Score = 106 bits (266), Expect = 7e-26
Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP- 163
+L K S+T +L ++++ + + S+ I Y+ N+ L L N L +
Sbjct: 23 KANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA 80
Query: 164 -DSLANLQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSM 220
L NL L L N+L LP V KLT+LK L L N+++++ + L+NL+
Sbjct: 81 LKELTNLTY---LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 221 LSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIP 278
L++ N+++ LP + +L NL LDL++N L+ LP+ + T L L L N+L ++P
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 279 D-MLGNLINLTRLRLSYN 295
D + L +L + L N
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215
Score = 103 bits (258), Expect = 9e-25
Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 34/222 (15%)
Query: 127 EELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP--DSLANLQQLRVLDLRHNKLNE 184
+ L + +Q + ++ + + + S+ L N++ L L NKL++
Sbjct: 22 IKANLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSVQGIQYLPNVRY---LALGGNKLHD 77
Query: 185 LPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLV 242
+ + +LT+L L L N+++++ + L+NL L + +N+++ LP + +L NL
Sbjct: 78 IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 243 TLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESV 300
L+LAHN L+ LPK + T L LDL +N+L ++P+ + L L LRL N+L+SV
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 301 PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRN 342
PDG+ LTS+ I L N
Sbjct: 197 -----------------------PDGVFDRLTSLQYIWLHDN 215
Score = 84.3 bits (209), Expect = 2e-18
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 28/219 (12%)
Query: 243 TLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE 302
+L + + + + + ++++ ++ + L N+ L L N+L +
Sbjct: 23 KANLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS- 79
Query: 303 TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSIN 362
L + +L + G L SLP+G+ LT++ + L N+ + P G + T++ +N
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 363 FEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI 422
HNQ+ +P G+F + LT+ LTEL+L NQ+ L E +
Sbjct: 140 LAHNQLQSLPKGVFDK-------------LTN----------LTELDLSYNQLQSLPEGV 176
Query: 423 -QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEEN 459
L L+ L L N LK +P + L L+ + L +N
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 78.9 bits (195), Expect = 2e-16
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 11/138 (7%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLT 160
N+ L L + + + ++++LT+L L L GN+L SLP+ + +TNL L L EN L
Sbjct: 64 NVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 161 SLP----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QY 214
SLP D L NL L L HN+L LP V+ KLT+L L L +N+++++ +
Sbjct: 123 SLPDGVFDKLTNLTYLN---LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 215 LSNLSMLSMRDNKIRELP 232
L+ L L + N+++ +P
Sbjct: 180 LTQLKDLRLYQNQLKSVP 197
Score = 71.6 bits (176), Expect = 4e-14
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
L L ++ + LP V +KLT+L L L N+L SLP + +TNLT L L+ N L SLP
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 164 ----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSN 217
D L L+ L L N+L +P V+ +LTSL+ ++L N P I+YLS
Sbjct: 174 EGVFDKLTQLKD---LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSE 229
Score = 55.4 bits (134), Expect = 1e-08
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
N+ L+L+ + + LP V +KLT+L EL L N+L SLP + +T L L L +N L
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 160 TSLP----DSLANLQQL 172
S+P D L +LQ +
Sbjct: 194 KSVPDGVFDRLTSLQYI 210
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 107 bits (269), Expect = 2e-26
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 10/216 (4%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
N + +L K S+T L ++L+ ++ + + SL + + TNL L L+ N ++
Sbjct: 19 ANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQIS 76
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
L L +L +L L + N+L L + L L+L N ++ + +L NL +
Sbjct: 77 DL-SPLKDLTKLEELSVNRNRLKNLNGI--PSACLSRLFLDNNELRDTDS-LIHLKNLEI 132
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP-D 279
LS+R+NK++ + LG L L LDL N + + + +DL + VN P
Sbjct: 133 LSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190
Query: 280 MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNV 315
L ++ R S P +S + V
Sbjct: 191 YQPELYITNTVKDPDGRWIS-PYYISNGGSYVDGCV 225
Score = 95.9 bits (239), Expect = 3e-22
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 19/240 (7%)
Query: 108 LSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLA 167
+ I + P L + + L + L S ++ + +++ SL +
Sbjct: 4 QRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-AGMQ 60
Query: 168 NLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNK 227
L+ L L HN++++L + LT L+ L + NR+K ++ + LS L + +N+
Sbjct: 61 FFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI--PSACLSRLFLDNNE 117
Query: 228 IRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINL 287
+R+ L LKNL L + +N L+ + +G + L LDL NE+ N L L +
Sbjct: 118 LRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGG-LTRLKKV 174
Query: 288 TRLRLSYNRLESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSI-NNITLSRNKFT 345
+ L+ + + P + + N PDG S I N +
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITN--------TVKDPDGRWISPYYISNGGSYVDGCVL 226
Score = 89.3 bits (222), Expect = 4e-20
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 354 QFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTN 413
+ N + + + N ++ + SL + + L EL+L N
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN 73
Query: 414 QISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKE 473
QIS L +++L LE L ++ N LK L + L L L+ N+L + + LK
Sbjct: 74 QISDL-SPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDTDS-LIHLKN 129
Query: 474 LQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNN 533
L+ L +++N+L S+ +G L+ L L + N + + + L+ ++ + L C+N
Sbjct: 130 LEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187
Score = 85.1 bits (211), Expect = 1e-18
Identities = 43/289 (14%), Positives = 88/289 (30%), Gaps = 58/289 (20%)
Query: 224 RDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGN 283
R I ++ P L N V +L + +L + + + ++ + ++ +
Sbjct: 5 RPTPINQVFP-DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAG-MQF 61
Query: 284 LINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNK 343
NL L LS+N++ + L L E +V L +L + L+ +
Sbjct: 62 FTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF-------- 112
Query: 344 FTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWV 403
++N++ L
Sbjct: 113 -------------------LDNNELRDTD-------------------------SLIHLK 128
Query: 404 GLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLES 463
L L++ N++ + + L LEVL L N + + L+K+ +DL K +
Sbjct: 129 NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186
Query: 464 LPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPE 512
P + + + + P I + + V E
Sbjct: 187 EPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235
Score = 79.7 bits (197), Expect = 9e-17
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 405 LTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESL 464
+ NLG ++ L + L ++ N+ ++ L + + LK L L N++ L
Sbjct: 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDL 78
Query: 465 PNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLY 524
+ L +L+ L + N+L +L LS L + N L+ + + L+NL L
Sbjct: 79 SP-LKDLTKLEELSVNRNRLKNLN--GIPSACLSRLFLDNNELRDT-DSLIHLKNLEILS 134
Query: 525 LNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPS 559
+ +N L +I L S L+++ L ++
Sbjct: 135 IRNN-KLKSIVM-LGFLSKLEVLDLHGNEITNTGG 167
Score = 74.3 bits (183), Expect = 6e-15
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 10/180 (5%)
Query: 102 NILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS 161
N+ L LS + I+ L P ++ LT LEEL + N+L +L L+ L L N L
Sbjct: 64 NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRD 120
Query: 162 LPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSML 221
DSL +L+ L +L +R+NKL + M+ L+ L++L L N I + L ++ +
Sbjct: 121 T-DSLIHLKNLEILSIRNNKLKSIVMLG-FLSKLEVLDLHGNEITNTGG-LTRLKKVNWI 177
Query: 222 SMRDNKIRELPPELGELKNLVTLDLAHNHLEEL--PKEIGNCTMLVTLDLQHNELVNIPD 279
+ K P + L + + P I N V + V +
Sbjct: 178 DLTGQKCVNEPVKY--QPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 104 bits (260), Expect = 1e-24
Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 18/249 (7%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL-- 162
+S +T +P + + EL KL + +L + +++N + +
Sbjct: 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71
Query: 163 PDSLANLQQLRVLDLRH-NKLNELP-MVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLS 219
D +NL +L + + N L + L +L+ L + IK + +
Sbjct: 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131
Query: 220 MLSMRDN-KIRELPPEL--GELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQH-NELV 275
+L ++DN I + G V L L N ++E+ N T L L+L N L
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191
Query: 276 NIP-DMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTS 333
+P D+ L +S R+ S+P L L + L LP L L +
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLKKLPT--LEKLVA 247
Query: 334 INNITLSRN 342
+ +L+
Sbjct: 248 LMEASLTYP 256
Score = 100 bits (251), Expect = 3e-23
Identities = 40/272 (14%), Positives = 92/272 (33%), Gaps = 35/272 (12%)
Query: 173 RVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIREL 231
RV + +K+ E+P + + L +++ + +L + + N + E+
Sbjct: 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 232 PPE--LGELKNLVTLDLAH-NHLEELPKEI-GNCTMLVTLDLQHNELVNIPDML-GNLIN 286
L L + + N+L + E N L L + + + ++PD+ + +
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129
Query: 287 LTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTS-INNITLSRNKFT 345
L + N + ++ L+ + L++N
Sbjct: 130 KVLLDIQDNIN----------------------IHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGL 405
+ ++N ++++P +F A +++ + SLP L
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP--SYGLENL 225
Query: 406 TELN-LGTNQISKLSEDIQNLVNLEVLVLSNN 436
+L T + KL ++ LV L L+
Sbjct: 226 KKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256
Score = 96.8 bits (241), Expect = 5e-22
Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 15/225 (6%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNK-LASLPSQI-GYVTNLTCLGLAE-N 157
N + L + + + LE++ + N L + + + + L + + + N
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 158 SLTSLP-DSLANLQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFN-RIKTVHPDI-- 212
+L + ++ NL L+ L + + + LP + +L ++ N I T+ +
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150
Query: 213 QYLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQ 270
+L + N I+E+ + +N+LEELP ++ + V LD+
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210
Query: 271 HNELVNIPDMLGNLINLTRLR-LSYNRLESVPETLSKCVHLNEFN 314
+ ++P L NL +LR S L+ +P TL K V L E +
Sbjct: 211 RTRIHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEAS 252
Score = 88.7 bits (220), Expect = 3e-19
Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 13/224 (5%)
Query: 360 SINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD-LGTWVGLTELNLGTNQI-SK 417
+ +++ +IP + A L L + + L ++ + N +
Sbjct: 13 VFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 418 LSEDI-QNLVNLEVLVLSN-NLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF-LKE 473
+ D+ NL L + + N L + NL L+ L + ++ LP+ +
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129
Query: 474 LQRLILQSN-QLVSLPRAI--GHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTC 530
L +Q N + ++ R G L + +N +Q I L L L+DN
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189
Query: 531 LNNIPFE-LALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYL 573
L +P + S I+ + + +PS + L R
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233
Score = 88.0 bits (218), Expect = 4e-19
Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 20/255 (7%)
Query: 286 NLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345
+ +++ +P L + + E L + G S + I +S+N
Sbjct: 10 SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 346 AYPSGGP-TQFTSVYSINFEH-NQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWV 403
+ ++ I E N + I F NL + + + + LP +
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP--DVHKI 125
Query: 404 GLTE---LNLGTN-QISKLSED-IQNL-VNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDL 456
+ L++ N I + + L +L L+ N ++++ +S + +
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185
Query: 457 EENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIPEE 513
+ N LE LPN++ F L + ++ SLP +L L S NL+ +P
Sbjct: 186 DNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP-T 241
Query: 514 IGTLENLHTLYLNDN 528
+ L L L
Sbjct: 242 LEKLVALMEASLTYP 256
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 101 bits (254), Expect = 1e-23
Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 14/200 (7%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI--GYVTNLTCLGLAENSLTSLP 163
L SK + ++P S+ ++ L L N L+ L ++ +TNL L L+ N L +
Sbjct: 23 LSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 164 -DSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSM 220
++ + LR LDL N L+ L + L +L++L L N I V + + ++ L
Sbjct: 81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140
Query: 221 LSMRDNKIRELPPE----LGELKNLVTLDLAHNHLEELPKEIGNCT---MLVTLDLQHNE 273
L + N+I P E +L L+ LDL+ N L++LP + L L +N
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200
Query: 274 LVNIPDMLGNLINLTRLRLS 293
L + + +LS
Sbjct: 201 LECDCKLYQLFSHWQYRQLS 220
Score = 101 bits (252), Expect = 2e-23
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 102 NILNLDLSKSSITHLPPSV--EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENS 158
LDLS ++++ L +LT+L L L N L + S+ V NL L L+ N
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 159 LTSLP-DSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPDI---- 212
L +L ++LQ L VL L +N + + + L+ LYL N+I ++
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159
Query: 213 QYLSNLSMLSMRDNKIRELPPE-LGELKNLV--TLDLAHNHL 251
L L +L + NK+++LP L +L V L L +N L
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
Score = 98.4 bits (245), Expect = 2e-22
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 9/157 (5%)
Query: 193 TSLKILYLRFNRIKTVHPDI--QYLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHN 249
+ +L L N + + + L+NL L + N + + E + NL LDL+ N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 250 HLEELPKEI-GNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPE----T 303
HL L + + + L L L +N +V + + ++ L +L LS N++ P
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 304 LSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLS 340
+K L ++ L LP L L + L
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Score = 97.6 bits (243), Expect = 3e-22
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDI--QNLVNLEVLVLSNNLLKKLPSSI-GNL 448
L ++P L + L+L N +S+L + L NL L+LS+N L + S +
Sbjct: 30 LPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87
Query: 449 RKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGEN 505
L+ LDL N L +L + F L+ L+ L+L +N +V + R A + L L + +N
Sbjct: 88 PNLRYLDLSSNHLHTLDEFL-FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 506 NLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVVGG 565
+ P +++ + L L ++ L + L ++P +
Sbjct: 147 QISRFPV--ELIKDGNKL------------------PKLMLLDLSSNKLKKLPLTDLQKL 186
Query: 566 PSLIIRYLKMQG 577
P+ + L +
Sbjct: 187 PAWVKNGLYLHN 198
Score = 89.5 bits (222), Expect = 1e-19
Identities = 60/264 (22%), Positives = 103/264 (39%), Gaps = 38/264 (14%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGG-PTQFTSVYSINFEHNQIDKIPYGIFSR 378
L ++P L S ++ LS N + + PT+ T+++S+ HN ++ I F
Sbjct: 30 LPNVPQSLPSYTALLD---LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86
Query: 379 AKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNL 437
N L L+L +N + L E + +L LEVL+L NN
Sbjct: 87 VPN-----------------------LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 438 LKKLPSSI-GNLRKLKCLDLEENKLESLPNEI----GFLKELQRLILQSNQLVSLPR-AI 491
+ + + ++ +L+ L L +N++ P E+ L +L L L SN+L LP +
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183
Query: 492 GHLTNLS--YLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSL 549
L L + N L+ + + L+ + + I SL
Sbjct: 184 QKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSL 243
Query: 550 D--NCPLSQIPSEIVVGGPSLIIR 571
D NC + + G +L IR
Sbjct: 244 DFFNCSEYKESAWEAHLGDTLTIR 267
Score = 84.5 bits (209), Expect = 8e-18
Identities = 41/229 (17%), Positives = 82/229 (35%), Gaps = 15/229 (6%)
Query: 240 NLVTLDLAHNHLEELPKEI--GNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNR 296
LDL+HN+L L E T L +L L HN L I + + NL L LS N
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 297 LESVP-ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSG---GP 352
L ++ S L + + + + + + LS+N+ + +P
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSK--VNMKDNLLTSLPLDLGTWVGLTELNL 410
+ + ++ N++ K+P + K + + +N L + L
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQL 219
Query: 411 GTNQISKLS------EDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKC 453
+ + + + N+ +L+ S + +G+ ++C
Sbjct: 220 SSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRC 268
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 98.5 bits (246), Expect = 2e-23
Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 19/232 (8%)
Query: 124 THLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHN-K 181
E+ + + +PS + L L E L ++P + +NL + + + +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 182 LNELPMVV-YKLTSLKILYLRFNR-IKTVHPDI-QYLSNLSMLSMRDNKIRELPPE--LG 236
L +L Y L+ + + +R R + + PD + L L L + + ++ P +
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127
Query: 237 ELKNLVTLDLAHN-HLEELPKEI--GNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLS 293
L++ N ++ +P G C +TL L +N ++ N L + L+
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187
Query: 294 YNR-LESVPE-TLSKCVH-LNEFNVEGCALSSLPDGL---LSSLTSINNITL 339
N+ L + + + +V ++++LP L L + N TL
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239
Score = 93.9 bits (234), Expect = 7e-22
Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 15/207 (7%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGN-KLASLPSQI-GYVTNLTCLGLAEN- 157
+ L L ++ + +P L ++ +Y+ + L L S ++ +T + +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 158 SLTSLP-DSLANLQQLRVLDLRHNKLNELP--MVVYKLTSLKILYLRFN-RIKTVHPDI- 212
+LT + D+L L L+ L + + L P VY IL + N + ++ +
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 213 QYLSNLSM-LSMRDNKIRELPPELGELKNLVTLDLAHN-HLEELPKEI--GNCTMLVTLD 268
Q L N ++ L + +N + L + L N +L + K+ G + LD
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211
Query: 269 LQHNELVNIPDMLGNLINLTRLRLSYN 295
+ + +P L +L L
Sbjct: 212 VSQTSVTALPS--KGLEHLKELIARNT 236
Score = 87.8 bits (218), Expect = 9e-20
Identities = 44/246 (17%), Positives = 81/246 (32%), Gaps = 36/246 (14%)
Query: 336 NITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSL 395
+ ++ PS P S ++ + IP FS N+S++ + +
Sbjct: 15 DFRVTCKDIQRIPSLPP----STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID----- 65
Query: 396 PLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNN-LLKKLPSSI-GNLRKLK 452
+ +L NL + + + N L + L LK
Sbjct: 66 -----------------VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108
Query: 453 CLDLEENKLESLPNEIGF--LKELQRLILQSN-QLVSLP-RAIGHLTNLS-YLSVGENNL 507
L + L+ P+ L + N + S+P A L N + L + N
Sbjct: 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168
Query: 508 QSIPEEIGTLENLHTLYLNDNTCLNNIPFEL--ALCSNLQIMSLDNCPLSQIPSEIVVGG 565
S+ L +YLN N L I + + S ++ + ++ +PS+ +
Sbjct: 169 TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228
Query: 566 PSLIIR 571
LI R
Sbjct: 229 KELIAR 234
Score = 84.7 bits (210), Expect = 1e-18
Identities = 40/252 (15%), Positives = 78/252 (30%), Gaps = 37/252 (14%)
Query: 261 CTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEG-C 318
C + ++ IP + + L+L L ++P S +++ V
Sbjct: 10 CHQEEDFRVTCKDIQRIPSLPP---STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 319 ALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSR 378
L L +L+ + +I + + I
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNT-----------------------RNLTYIDPDALKE 103
Query: 379 AKNLSKVNMKDNLLTSLPLD--LGTWVGLTELNLGTN-QISKLSEDI-QNLVN-LEVLVL 433
L + + + L P + + L + N ++ + + Q L N L L
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163
Query: 434 SNNLLKKLPSSIGNLRKLKCLDLEENK-LESLPNEI--GFLKELQRLILQSNQLVSLP-R 489
NN + N KL + L +NK L + + G L + + +LP +
Sbjct: 164 YNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223
Query: 490 AIGHLTNLSYLS 501
+ HL L +
Sbjct: 224 GLEHLKELIARN 235
Score = 81.6 bits (202), Expect = 1e-17
Identities = 40/275 (14%), Positives = 78/275 (28%), Gaps = 57/275 (20%)
Query: 216 SNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHN-E 273
+ I+ +P + TL L HL +P N + + + +
Sbjct: 11 HQEEDFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 274 LVNIP-DMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLT 332
L + NL +T + + R L+ + L L
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRN----------------------LTYIDPDALKELP 105
Query: 333 SINNITLSRNKFTAYPSGG-PTQFTSVYSINFEHN-QIDKIPYGIFSRAKNLSKVNMKDN 390
+ + + +P + + N + IP F N
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------- 157
Query: 391 LLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLS-NNLLKKLPSSI--GN 447
L L N + + N L+ + L+ N L + G
Sbjct: 158 --------------TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203
Query: 448 LRKLKCLDLEENKLESLPNEIGFLKELQRLILQSN 482
LD+ + + +LP++ L+ L+ LI ++
Sbjct: 204 YSGPSLLDVSQTSVTALPSKG--LEHLKELIARNT 236
Score = 77.0 bits (190), Expect = 4e-16
Identities = 30/159 (18%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 102 NILNLDLSKS-SITHLPPSV-EKLTHLEELYLYGNKLASLP--SQIGYVTNLTCLGLAEN 157
+ ++++ + ++T++ P ++L L+ L ++ L P +++ L + +N
Sbjct: 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140
Query: 158 S-LTSLP-DSLANLQ-QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNR-IKTVHPDI- 212
+TS+P ++ L + L L +N + + T L +YL N+ + + D
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200
Query: 213 -QYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNH 250
S S+L + + LP + L++L L +
Sbjct: 201 GGVYSGPSLLDVSQTSVTALPSKG--LEHLKELIARNTW 237
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 95.1 bits (237), Expect = 2e-22
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSED--IQNLVNLEVLVLSNNLLKKLPSSI-GNL 448
L +P + EL L N+ + L + L L + SNN + +
Sbjct: 23 LNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80
Query: 449 RKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGEN 505
+ + L N+LE++ +++ F L+ L+ L+L+SN++ + + L+++ LS+ +N
Sbjct: 81 SGVNEILLTSNRLENVQHKM-FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139
Query: 506 NLQSIPEEI-GTLENLHTLYLNDN 528
+ ++ TL +L TL L N
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLAN 163
Score = 87.8 bits (218), Expect = 5e-20
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 124 THLEELYLYGNKLASLPSQIGY--VTNLTCLGLAENSLTSLPD-SLANLQQLRVLDLRHN 180
+ EL L N+ L + + + L + + N +T + + + + + L N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 181 KLNELP-MVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPE-LGE 237
+L + + L SLK L LR NRI V D LS++ +LS+ DN+I + P
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 238 LKNLVTLDLAHN 249
L +L TL+L N
Sbjct: 152 LHSLSTLNLLAN 163
Score = 87.8 bits (218), Expect = 6e-20
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLD--LGTWVGLTELNLGTNQISKLSEDI-QNLVN 427
IP I L + +N T L L ++N N+I+ + E +
Sbjct: 26 IPEHIPQYTAEL---RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82
Query: 428 LEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQL 484
+ ++L++N L+ + + L LK L L N++ + N+ F L ++ L L NQ+
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQI 141
Query: 485 VSLPR-AIGHLTNLSYLSVGEN 505
++ A L +LS L++ N
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLAN 163
Score = 87.4 bits (217), Expect = 8e-20
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 105 NLDLSKSSITHLPPSVE--KLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTS 161
L L+ + T L + KL L ++ NK+ + + + + L N L +
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 162 LPDSL-ANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPDI-QYLSNL 218
+ + L+ L+ L LR N++ + L+S+++L L N+I TV P L +L
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 219 SMLSMRDN 226
S L++ N
Sbjct: 156 STLNLLAN 163
Score = 78.9 bits (195), Expect = 6e-17
Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 28/155 (18%)
Query: 193 TSLKILYLRFNRIKTVHPD--IQYLSNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHN 249
L L N + + L L ++ +NKI ++ + + L N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 250 HLEELPKEI-GNCTMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYNRLESVPETLSKC 307
LE + ++ L TL L+ N + + D L ++ L L N+
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ----------- 140
Query: 308 VHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRN 342
++++ G +L S++ + L N
Sbjct: 141 ------------ITTVAPGAFDTLHSLSTLNLLAN 163
Score = 72.0 bits (177), Expect = 2e-14
Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
Query: 243 TLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIP--DMLGNLINLTRLRLSYNRLESV 300
T+D ++ L ++P+ I T L L +NE + + L L ++ S N++ +
Sbjct: 15 TVDCSNQKLNKIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72
Query: 301 PE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVY 359
E +NE + L ++ + L S+ + L N+ T + +SV
Sbjct: 73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 360 SINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
++ NQI + G F +LS +N+ N
Sbjct: 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 58.9 bits (143), Expect = 5e-10
Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
+ + L+ + + ++ + + L L+ L L N++ + + ++++ L L +N +
Sbjct: 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141
Query: 160 TSLPD-SLANLQQLRVLDLRHN 180
T++ + L L L+L N
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLAN 163
Score = 53.1 bits (128), Expect = 4e-08
Identities = 14/111 (12%), Positives = 41/111 (36%), Gaps = 26/111 (23%)
Query: 454 LDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGENNLQSI 510
L L N+ L F L +L+++ +N++ + A + ++ + + N L+++
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 511 PEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPSEI 561
+ L +L+ + L + ++ + ++
Sbjct: 97 QH--KMFKGL---------------------ESLKTLMLRSNRITCVGNDS 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 100 bits (250), Expect = 2e-22
Identities = 45/275 (16%), Positives = 89/275 (32%), Gaps = 30/275 (10%)
Query: 248 HNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKC 307
L + L R LS + + L C
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESC 371
Query: 308 VHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQ 367
L E E LL+ + + + Y F+++ +++
Sbjct: 372 KELQELEPEN------KWCLLTIILLMRAL-----DPLLYEKETLQYFSTLKAVDPMRAA 420
Query: 368 IDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVN 427
+++ L + + + L+L ++ L ++ L+
Sbjct: 421 YLD---------------DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLL 464
Query: 428 LEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSL 487
+ L LS+N L+ LP ++ LR L+ L +N LE++ + L LQ L+L +N+L
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQS 523
Query: 488 P--RAIGHLTNLSYLSVGENNLQSIPEEIGTLENL 520
+ + L L++ N+L L +
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
Score = 86.0 bits (212), Expect = 7e-18
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 113 ITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQL 172
+ + + L+L L L + + +T L L+ N L +LP +LA L+ L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCL 488
Query: 173 RVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLS---NLSMLSMRDNKIR 229
VL N L + V L L+ L L NR++ IQ L L +L+++ N +
Sbjct: 489 EVLQASDNALENVDG-VANLPRLQELLLCNNRLQQS-AAIQPLVSCPRLVLLNLQGNSLC 546
Query: 230 ELPPELGELKNL 241
+ L +
Sbjct: 547 QEEGIQERLAEM 558
Score = 84.0 bits (207), Expect = 3e-17
Identities = 40/257 (15%), Positives = 80/257 (31%), Gaps = 7/257 (2%)
Query: 307 CVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHN 366
L ++ + + S L +++ + ++
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVE 359
Query: 367 QIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLV 426
+ + + S + L ++ L + L S L + + +
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL-KAVDPMR 418
Query: 427 NLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVS 486
+ L + L + ++ L L L L + + L + L L N+L +
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA 477
Query: 487 LPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIP--FELALCSNL 544
LP A+ L L L +N L+++ + L L L L +N L L C L
Sbjct: 478 LPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRL 535
Query: 545 QIMSLDNCPLSQIPSEI 561
+++L L Q
Sbjct: 536 VLLNLQGNSLCQEEGIQ 552
Score = 73.6 bits (180), Expect = 6e-14
Identities = 53/297 (17%), Positives = 87/297 (29%), Gaps = 30/297 (10%)
Query: 290 LRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPS 349
R R E V E + C L G + + P
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291
Query: 350 GGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT----SLPLDLGTWVGL 405
G + D++P F S + LL D T L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351
Query: 406 TELNLGTNQISKLSEDIQNLVNLEVLVLSNNL--------------LKKLPSSIGNLRKL 451
L + + L ++++ L+ L N L ++ L
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411
Query: 452 KCLD---------LEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSV 502
K +D L L +++ L L L L + L +++L +
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDL 470
Query: 503 GENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQIPS 559
N L+++P + L L L +DN L N+ +A LQ + L N L Q +
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAA 525
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 94.4 bits (235), Expect = 3e-22
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLR 449
S+P G L L NQI+KL + +L+NL+ L L +N L LP + +L
Sbjct: 31 HASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88
Query: 450 KLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNL 507
+L LDL N+L LP+ + F L L+ L + N+L LPR I LT+L++L++ +N L
Sbjct: 89 QLTVLDLGTNQLTVLPSAV-FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Query: 508 QSIPEEI-GTLENLHTLYLNDN 528
+SIP L +L YL N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169
Score = 87.1 bits (216), Expect = 1e-19
Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 10/129 (7%)
Query: 105 NLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL 162
L L + IT L P V + L +L+ELYL N+L +LP + +T LT L L N LT L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 163 P----DSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTV-HPDIQYLSN 217
P D L +L++L + NKL ELP + +LT L L L N++K++ H LS+
Sbjct: 104 PSAVFDRLVHLKEL---FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 218 LSMLSMRDN 226
L+ + N
Sbjct: 161 LTHAYLFGN 169
Score = 74.3 bits (183), Expect = 3e-15
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 127 EELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP----DSLANLQQLRVLDLRHNK 181
+ LYL+ N++ L + + NL L L N L +LP DSL L L L N+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD---LGTNQ 99
Query: 182 LNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPE-LGELK 239
L LP V+ +L LK L++ N++ + I+ L++L+ L++ N+++ +P L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 240 NLVTLDLAHN 249
+L L N
Sbjct: 160 SLTHAYLFGN 169
Score = 70.5 bits (173), Expect = 7e-14
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 135 KLASLPSQIGYVTNLTCLGLAENSLTSLPDSL-ANLQQLRVLDLRHNKLNELPMVVY-KL 192
+ AS+P+ I TN L L +N +T L + +L L+ L L N+L LP+ V+ L
Sbjct: 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87
Query: 193 TSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHL 251
T L +L L N++ + + L +L L M NK+ ELP + L +L L L N L
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Query: 252 EELPKEI-GNCTMLVTLDLQHN 272
+ +P + L L N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169
Score = 70.1 bits (172), Expect = 9e-14
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 24/152 (15%)
Query: 193 TSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNH 250
T+ +ILYL N+I + P + L NL L + N++ LP + L L LDL N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 251 LEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHL 310
L LP + L++L L + N+L +P + + HL
Sbjct: 100 LTVLP----------------------SAVFDRLVHLKELFMCCNKLTELPRGIERLTHL 137
Query: 311 NEFNVEGCALSSLPDGLLSSLTSINNITLSRN 342
++ L S+P G L+S+ + L N
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 64.7 bits (158), Expect = 5e-12
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 293 SYNRLESVP-----ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAY 347
R SVP +H N ++ L G+ SL ++ + L N+ A
Sbjct: 27 RSKRHASVPAGIPTNAQILYLHDN-------QITKLEPGVFDSLINLKELYLGSNQLGAL 79
Query: 348 PSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTE 407
P G T + ++ NQ+ +P +F R +L ++ M N LT LP + LT
Sbjct: 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139
Query: 408 LNLGTNQISKLSEDI-QNLVNLEVLVLSNN 436
L L NQ+ + L +L L N
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 59.3 bits (144), Expect = 4e-10
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ LDL + +T LP +V ++L HL+EL++ NKL LP I +T+LT L L +N L
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Query: 161 SLP----DSLANLQQL 172
S+P D L++L
Sbjct: 149 SIPHGAFDRLSSLTHA 164
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 90.0 bits (224), Expect = 6e-21
Identities = 33/201 (16%), Positives = 75/201 (37%), Gaps = 28/201 (13%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
+ LN L +SS + ++ L + L + L + I Y N+ L + T
Sbjct: 23 KAYLNGLLGQSSTA--NITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHAT 79
Query: 161 SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM 220
+ + ++ L L L + + TS KI P++ L++L++
Sbjct: 80 NY-NPISGLSNLERLRIMGKDV----------TSDKI------------PNLSGLTSLTL 116
Query: 221 LSMRDNKIRELPPE-LGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPD 279
L + + + + L + ++DL++N + L +L++Q + + +
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG 176
Query: 280 MLGNLINLTRLRLSYNRLESV 300
+ + L +L +
Sbjct: 177 -IEDFPKLNQLYAFSQTIGGK 196
Score = 82.7 bits (205), Expect = 2e-18
Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 6/155 (3%)
Query: 405 LTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESL 464
LT + L ++ L+ I+ N++ L ++N + I L L+ L + + S
Sbjct: 46 LTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSD 103
Query: 465 -PNEIGFLKELQRLILQSNQL-VSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHT 522
+ L L L + + S+ I L ++ + + N + + TL L +
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163
Query: 523 LYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQI 557
L + + +++ + L + + +
Sbjct: 164 LNIQFDG-VHDYRG-IEDFPKLNQLYAFSQTIGGK 196
Score = 68.1 bits (167), Expect = 3e-13
Identities = 22/173 (12%), Positives = 64/173 (36%), Gaps = 6/173 (3%)
Query: 264 LVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSL 323
+ L + NI + + +LT + L+ + + + ++ + + ++
Sbjct: 25 YLNGLLGQSSTANITE--AQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY 81
Query: 324 PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
+S L+++ + + T+ + TS+ ++ H+ D + ++
Sbjct: 82 NP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139
Query: 384 KVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNN 436
+++ N + + L T L LN+ + + I++ L L +
Sbjct: 140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191
Score = 64.6 bits (158), Expect = 3e-12
Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 35/218 (16%)
Query: 272 NELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSL 331
+ VNIPD L + ++ T ++ L + ++ L +
Sbjct: 12 QDNVNIPD--STFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANINVTDLTG--IEYA 65
Query: 332 TSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNL 391
+I ++T++ T Y S NL ++ +
Sbjct: 66 HNIKDLTINNIHATNYNP--------------------------ISGLSNLERLRIMGKD 99
Query: 392 LTSLPL-DLGTWVGLTELNLGTNQISKLS-EDIQNLVNLEVLVLSNNLLKKLPSSIGNLR 449
+TS + +L LT L++ + I L + + LS N + L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159
Query: 450 KLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSL 487
+LK L+++ + + I +L +L S +
Sbjct: 160 ELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQTIGGK 196
Score = 59.6 bits (145), Expect = 2e-10
Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 5/139 (3%)
Query: 424 NLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQ 483
+L + + + + L + L + L I + ++ L + +
Sbjct: 21 TFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIH 77
Query: 484 LVSLPRAIGHLTNLSYLSVGENNLQSI-PEEIGTLENLHTLYLNDNTCLNNIPFELALCS 542
+ I L+NL L + ++ S + L +L L ++ + ++I ++
Sbjct: 78 ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 543 NLQIMSLDNCPLSQIPSEI 561
+ + L +
Sbjct: 137 KVNSIDLSYNGAITDIMPL 155
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 87.4 bits (217), Expect = 6e-20
Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 385 VNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPS 443
V TS+P G T L+L TN + L + L +L L L N L+ LP+
Sbjct: 12 VECYSQGRTSVPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69
Query: 444 SIGN-LRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLP-RAIGHLTNLSY 499
+ N L L L+L N+L+SLPN + F L +L+ L L +NQL SLP LT L
Sbjct: 70 GVFNKLTSLTYLNLSTNQLQSLPNGV-FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128
Query: 500 LSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
L + +N L+S+P+ + L +L ++L+DN
Sbjct: 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 81.6 bits (202), Expect = 5e-18
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 13/131 (9%)
Query: 105 NLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL 162
LDL +S+ LP V ++LT L +LYL GNKL SLP+ + +T+LT L L+ N L SL
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 163 P----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPD--IQYL 215
P D L L++ L L N+L LP V+ KLT LK L L N++K+V PD L
Sbjct: 92 PNGVFDKLTQLKE---LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRL 147
Query: 216 SNLSMLSMRDN 226
++L + + DN
Sbjct: 148 TSLQYIWLHDN 158
Score = 81.6 bits (202), Expect = 6e-18
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTW-VGLTELNLGTNQISKLSEDI-QNLVNL 428
+P GI ++ L +++ N L SLP + LT+L LG N++ L + L +L
Sbjct: 22 VPTGIPAQTTYL---DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 429 EVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLV 485
L LS N L+ LP+ + L +LK L L N+L+SLP+ + F L +L+ L L NQL
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV-FDKLTQLKDLRLYQNQLK 137
Query: 486 SLPR-AIGHLTNLSYLSVGEN 505
S+P LT+L Y+ + +N
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDN 158
Score = 77.0 bits (190), Expect = 2e-16
Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 429 EVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQLVS 486
L L N LK LP+ + L L L L NKL+SLPN + L L L L +NQL S
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 487 LPRAI-GHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIP 535
LP + LT L L++ N LQS+P+ + L L L L N L ++P
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVP 140
Score = 74.3 bits (183), Expect = 2e-15
Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
L L + + LP V KLT L L L N+L SLP+ + +T L L L N L SLP
Sbjct: 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
Query: 164 ----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSN 217
D L L+ L L N+L +P V+ +LTSL+ ++L N P I+YLS
Sbjct: 117 DGVFDKLTQLKD---LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSE 172
Score = 66.2 bits (162), Expect = 1e-12
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 107 DLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP-- 163
+ T +P + T L L N L SLP+ + +T+LT L L N L SLP
Sbjct: 13 ECYSQGRTSVPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70
Query: 164 --DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSNLS 219
+ L +L L L N+L LP V+ KLT LK L L N+++++ + L+ L
Sbjct: 71 VFNKLTSLTYLN---LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127
Query: 220 MLSMRDNKIRELPPE-LGELKNLVTLDLAHN 249
L + N+++ +P L +L + L N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 65.9 bits (161), Expect = 2e-12
Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNELP-MVVYKLTSLKILYLRFNRIKTVHPDI-QYL 215
TS+P + LDL N L LP V +LTSL LYL N+++++ + L
Sbjct: 18 GRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75
Query: 216 SNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNE 273
++L+ L++ N+++ LP + +L L L L N L+ LP + T L L L N+
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135
Query: 274 LVNIPD-MLGNLINLTRLRLSYN 295
L ++PD + L +L + L N
Sbjct: 136 LKSVPDGVFDRLTSLQYIWLHDN 158
Score = 61.6 bits (150), Expect = 5e-11
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 193 TSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNH 250
L L N +K++ + L++L+ L + NK++ LP + +L +L L+L+ N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 251 LEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE-TLSKCVH 309
L+ LP + L L L L+ N+L+S+P+ K
Sbjct: 88 LQSLP----------------------NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125
Query: 310 LNEFNVEGCALSSLPDGLLSSLTSINNITLSRN 342
L + + L S+PDG+ LTS+ I L N
Sbjct: 126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 60.1 bits (146), Expect = 2e-10
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 293 SYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGP 352
SVP + ++E +L SLP+G+ LTS+ + L NK + P+G
Sbjct: 15 YSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72
Query: 353 TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGT 412
+ TS+ +N NQ+ +P G+F + LT L EL L T
Sbjct: 73 NKLTSLTYLNLSTNQLQSLPNGVFDK-------------LTQ----------LKELALNT 109
Query: 413 NQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEEN 459
NQ+ L + + L L+ L L N LK +P + L L+ + L +N
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 55.5 bits (134), Expect = 6e-09
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
++ L+LS + + LP V +KLT L+EL L N+L SLP + +T L L L +N L
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 160 TSLP----DSLANLQQL 172
S+P D L +LQ +
Sbjct: 137 KSVPDGVFDRLTSLQYI 153
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 87.4 bits (217), Expect = 8e-20
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 101 ENILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSL 159
E I + L +++I +PP L + L N+++ L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA------------------- 72
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPDI-QYLSN 217
PD+ L+ L L L NK+ ELP + L SL++L L N+I + D Q L N
Sbjct: 73 ---PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 218 LSMLSMRDNKIRELPPE-LGELKNLVTLDLAHN 249
L++LS+ DNK++ + L+ + T+ LA N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 87.4 bits (217), Expect = 8e-20
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 133 GNKLASLPSQIGYVTNLTCLGLAENSLTSLP-DSLANLQQLRVLDLRHNKLNELPM-VVY 190
G L +P+ + +T + L +N++ +P + + ++LR +DL +N+++EL
Sbjct: 20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 191 KLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAH 248
L SL L L N+I + + + L +L +L + NKI L + +L NL L L
Sbjct: 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137
Query: 249 NHLEELPKEI-GNCTMLVTLDLQHN 272
N L+ + K + T+ L N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 82.4 bits (204), Expect = 4e-18
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 426 VNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSN 482
+ + L N +K +P +KL+ +DL N++ L + F L+ L L+L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGN 90
Query: 483 QLVSLPRAI-GHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIPFE-LA 539
++ LP+++ L +L L + N + + + L NL+ L L DN L I +
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFS 149
Query: 540 LCSNLQIMSLDNCPL 554
+Q M L P
Sbjct: 150 PLRAIQTMHLAQNPF 164
Score = 77.8 bits (192), Expect = 1e-16
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 29/166 (17%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
L+ +P L ++T I L +N P G + + + I+ +NQI ++ F
Sbjct: 23 LTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 380 KNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLL 438
++ L L L N+I++L + + + L +L++L+L+ N +
Sbjct: 80 RS-----------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 439 KKLPSSI-GNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSN 482
L +L L L L +NKL+++ L+ +Q + L N
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 77.8 bits (192), Expect = 2e-16
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 106 LDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
+DLS + I+ L P + L L L LYGNK+ LP + + +L L L N + L
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120
Query: 164 -DSLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHP-----DIQYLS 216
D+ +L L +L L NKL + L +++ ++L N P +++L+
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN------PFICDCHLKWLA 174
Query: 217 N 217
+
Sbjct: 175 D 175
Score = 71.2 bits (175), Expect = 3e-14
Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 266 TLDLQHNELVNIPDM-LGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSL 323
+ L+ N + IP L R+ LS N++ + LN + G ++ L
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 324 PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
P L L S+ + L+ NK ++ ++ N++ I G FS + +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 384 KVNMKDN 390
+++ N
Sbjct: 156 TMHLAQN 162
Score = 68.1 bits (167), Expect = 3e-13
Identities = 32/179 (17%), Positives = 60/179 (33%), Gaps = 47/179 (26%)
Query: 193 TSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNH 250
++ + L N IK + P L + + +N+I EL P+ L++L +L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 251 LEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHL 310
+ ELP + L +L L L+ N++
Sbjct: 92 ITELP----------------------KSLFEGLFSLQLLLLNANKINC----------- 118
Query: 311 NEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID 369
L L ++N ++L NK G + ++ +++ N
Sbjct: 119 ------------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 86.7 bits (215), Expect = 3e-19
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 12/154 (7%)
Query: 105 NLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL 162
LDL + + L + LT L L L N+L +L + + +T L LGLA N L SL
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 163 P----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLS 216
P D L L + L L N+L LP V+ +LT LK L L N+++++ L+
Sbjct: 99 PLGVFDHLTQLDK---LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 217 NLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHN 249
NL LS+ N+++ +P L L T+ L N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 79.4 bits (196), Expect = 8e-17
Identities = 54/155 (34%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 426 VNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEI-GFLKELQRLILQSNQ 483
+ E L L + L L + L KL L+L+ N+L++L + L EL L L +NQ
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 484 LVSLPRAI-GHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDNTCLNNIP---FEL 538
L SLP + HLT L L +G N L+S+P + L L L LN N L +IP F+
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFD- 152
Query: 539 ALCSNLQIMSLDNCPLSQIPSEIVVGGPSLIIRYL 573
L +NLQ +SL L +P L L
Sbjct: 153 KL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 78.2 bits (193), Expect = 2e-16
Identities = 46/174 (26%), Positives = 68/174 (39%), Gaps = 27/174 (15%)
Query: 127 EELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNEL 185
E+L L LA+L +T LT L L N L +L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS---------------------- 75
Query: 186 PMVVYKLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVT 243
V LT L L L N++ ++ + +L+ L L + N+++ LP + L L
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 244 LDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYN 295
L L N L+ +P T L TL L N+L ++P L L + L N
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 76.3 bits (188), Expect = 8e-16
Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 32/187 (17%)
Query: 276 NIPDMLGNLINLTRLRLSYNRLESVPET-LSKCVHLNEFNVEGCALSSLPDGLLSSLTSI 334
IP + +L L L ++ + L N++ L +L G+ LT +
Sbjct: 32 GIPA------DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 335 NNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTS 394
+ L+ N+ + P G T + + NQ+ +P G+F D L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF------------DRL--- 130
Query: 395 LPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLK 452
L EL L TNQ+ + L NL+ L LS N L+ +P L KL+
Sbjct: 131 --------TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Query: 453 CLDLEEN 459
+ L N
Sbjct: 183 TITLFGN 189
Score = 70.9 bits (174), Expect = 6e-14
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 105 NLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL 162
L L+ + + LP V + LT L++LYL GN+L SLPS + +T L L L N L S+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 163 PDSL-ANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSN 217
P L L+ L L N+L +P + +L L+ + L N+ +I YLS
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ 203
Score = 66.3 bits (162), Expect = 2e-12
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 27/181 (14%)
Query: 193 TSLKILYLRFNRIKTVHP-DIQYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNH 250
+ L L+ + T+ + L+ L+ L++ N+++ L + +L L TL LA+N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 251 LEELPKEI-GNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESVPETLSKCV 308
L LP + + T L L L N+L ++P + L L LRL+ N+L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL----------- 143
Query: 309 HLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQI 368
S+P G LT++ ++LS N+ + P G + + +I NQ
Sbjct: 144 ------------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Query: 369 D 369
D
Sbjct: 192 D 192
Score = 55.1 bits (133), Expect = 1e-08
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
+ L L + + LP V ++LT L+EL L N+L S+P+ +TNL L L+ N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 160 TSLPD-SLANLQQLRVLDLRHN 180
S+P + L +L+ + L N
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGN 189
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 83.8 bits (207), Expect = 7e-18
Identities = 47/276 (17%), Positives = 87/276 (31%), Gaps = 25/276 (9%)
Query: 253 ELPKEIGNCTMLVTLDLQHNELVNIPDMLGNL----INLTRLRLSYNRLESVPETLSKCV 308
EL + L+ +L D++ +L + + R+ L L
Sbjct: 37 ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG-IS 95
Query: 309 HLNEFNVEGCALS--SLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQF----TSVYSIN 362
L E +E ++ + P L ++ +N + L + + + ++
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155
Query: 363 FEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLP-----LDLGTWVGLTELNLGTNQISK 417
LS +++ DN L + L L L +
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215
Query: 418 LSEDI----QNLVNLEVLVLSNNLLKKLPSSIG--NLRKLKCLDLEENKLESLPNEIGFL 471
S V L+ L LS+N L+ + +L L+L L+ +P +
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--P 273
Query: 472 KELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNL 507
+L L L N+L P L + LS+ N
Sbjct: 274 AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308
Score = 82.6 bits (204), Expect = 1e-17
Identities = 53/242 (21%), Positives = 84/242 (34%), Gaps = 24/242 (9%)
Query: 96 LRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKL---ASLPSQIGYVTNLTCL 152
L K + + + V ++ L+EL L ++ A P +L L
Sbjct: 68 LSLKRLTVRAARIPSRILFGAL-RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126
Query: 153 GLAENSLTSLPDSLANLQQ-----LRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIK 206
L S + LA LQQ L+VL + V +L L L N
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186
Query: 207 TVHPDI-----QYLSNLSMLSMRDNKIRELPPE----LGELKNLVTLDLAHNHLEELPKE 257
I L +L++R+ + L LDL+HN L +
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
Query: 258 IG--NCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNV 315
+ L +L+L L +P L L+ L LSYNRL+ P + + ++
Sbjct: 247 PSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLDRNPSPD-ELPQVGNLSL 303
Query: 316 EG 317
+G
Sbjct: 304 KG 305
Score = 82.3 bits (203), Expect = 2e-17
Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 20/204 (9%)
Query: 90 NIEKEFLRCKEENILNLDLSKSSITHLPPSVEKL-----THLEELYLYGNKLASLP-SQI 143
L ++ L+L S + +L L+ L + + Q+
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169
Query: 144 GYVTNLTCLGLAENSLTSLP-----DSLANLQQLRVLDLRHNKLNELPMVVY----KLTS 194
L+ L L++N L+VL LR+ + V
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229
Query: 195 LKILYLRFNRIKTVHPDI--QYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLE 252
L+ L L N ++ + S L+ L++ ++++P L L LDL++N L+
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLD 287
Query: 253 ELPKEIGNCTMLVTLDLQHNELVN 276
P + L L+ N ++
Sbjct: 288 RNPS-PDELPQVGNLSLKGNPFLD 310
Score = 74.9 bits (184), Expect = 6e-15
Identities = 36/179 (20%), Positives = 57/179 (31%), Gaps = 15/179 (8%)
Query: 85 IQADLNIEKEFLRCKEENILNLDLSKSSITHLP-PSVEKLTHLEELYLYGNKLASLPSQI 143
E + + + L ++++ + V L L L N I
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192
Query: 144 -----GYVTNLTCLGLAENSLTSLPD----SLANLQQLRVLDLRHNKLNELPMVV--YKL 192
L L L + + A QL+ LDL HN L +
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252
Query: 193 TSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHL 251
+ L L L F +K V + + LS+L + N++ P EL + L L N
Sbjct: 253 SQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPD-ELPQVGNLSLKGNPF 308
Score = 73.0 bits (179), Expect = 3e-14
Identities = 53/345 (15%), Positives = 101/345 (29%), Gaps = 67/345 (19%)
Query: 147 TNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIK 206
+ CLG A+ L SL L + + + ++ + SL + L +
Sbjct: 26 SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDI------IKSLSLKRLTVRAAR 79
Query: 207 TVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVT 266
P L +L + L+ L +L P L
Sbjct: 80 I--PSRILFGALRVLGIS------------GLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 267 LDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDG 326
L+L++ L L + L ++ +
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKP------------------GLKVLSIAQAHSLNFSCE 167
Query: 327 LLSSLTSINNITLSRNKFTA----YPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNL 382
+ +++ + LS N + P +F ++ + + ++ + A
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 383 SKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI--QNLVNLEVLVLSNNLLKK 440
+ L L+L N + + L L LS LK+
Sbjct: 228 VQ--------------------LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267
Query: 441 LPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLV 485
+P + KL LDL N+L+ P L ++ L L+ N +
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFL 309
Score = 66.8 bits (163), Expect = 3e-12
Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 20/203 (9%)
Query: 376 FSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVN-----LEV 430
S + L+ N++ PL T L LNL + + L L+V
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 431 LVLSNNLLKKLP-SSIGNLRKLKCLDLEENKLESLPNEI-----GFLKELQRLILQSNQL 484
L ++ + L LDL +N I LQ L L++ +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 485 VSLP----RAIGHLTNLSYLSVGENNLQSIPEEIGT--LENLHTLYLNDNTCLNNIPFEL 538
+ L L + N+L+ L++L L+ L +P L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL 272
Query: 539 ALCSNLQIMSLDNCPLSQIPSEI 561
+ L ++ L L + PS
Sbjct: 273 P--AKLSVLDLSYNRLDRNPSPD 293
Score = 59.1 bits (143), Expect = 9e-10
Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 25/220 (11%)
Query: 366 NQIDKIPYGIFSRAKNLSKVNMKDNLLTSL----PLDLGTWVGLTELNLGTNQISK---L 418
+ D + ++ +L ++ ++ + S L + GL EL L +++
Sbjct: 54 TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113
Query: 419 SEDIQNLVNLEVLVLSNNLLKKLPSSIGNL-----RKLKCLDLEENKLESLP-NEIGFLK 472
+L +L L N + + L LK L + + + ++
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173
Query: 473 ELQRLILQSNQLVSLPRAI-----GHLTNLSYLSVGENNLQSIPEEIGTL----ENLHTL 523
L L L N + I L L++ +++ L L L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
Query: 524 YLNDNTCLNNIPFEL--ALCSNLQIMSLDNCPLSQIPSEI 561
L+ N L + S L ++L L Q+P +
Sbjct: 234 DLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272
Score = 48.7 bits (116), Expect = 2e-06
Identities = 30/184 (16%), Positives = 50/184 (27%), Gaps = 21/184 (11%)
Query: 405 LTELNLGTNQISKLSED----IQNLVNLEVLVLSNN-LLKKLPSSIGNL--RKLKCLDLE 457
L L + +I + + L+ L L N + P + L L+L
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129
Query: 458 ENKLESLPNEIGFL-----KELQRLILQSNQLVSLP-RAIGHLTNLSYLSVGENNLQSIP 511
+ + L L+ L + ++ + LS L + +N
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189
Query: 512 EEI-----GTLENLHTLYLNDN---TCLNNIPFELALCSNLQIMSLDNCPLSQIPSEIVV 563
I L L L + T A LQ + L + L
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249
Query: 564 GGPS 567
PS
Sbjct: 250 DWPS 253
Score = 31.8 bits (72), Expect = 0.56
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 14/152 (9%)
Query: 424 NLVNLEVLVLSNNLLKKLPSSIGNLR--KLKCLDLEENKL--ESLPNEIGFLK--ELQRL 477
+LE L+ + L ++ LK L + ++ L + L LQ L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 478 ILQSNQL---VSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTL-----ENLHTLYLNDNT 529
L++ ++ P +L+ L++ + + + L L L +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 530 CLNNIPFELALCSNLQIMSLDNCPLSQIPSEI 561
LN ++ + L + L + P I
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 80.4 bits (199), Expect = 1e-17
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 429 EVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVS 486
L L N +P + N + L +DL N++ +L N+ F + +L LIL N+L
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLRC 92
Query: 487 LP-RAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
+P R L +L LS+ N++ +PE L L L + N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 77.3 bits (191), Expect = 2e-16
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSI-GNLRK 450
L LP + +TEL L NQ + + +++ N +L ++ LSNN + L + N+ +
Sbjct: 22 LKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79
Query: 451 LKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGEN 505
L L L N+L +P F LK L+ L L N + +P A L+ LS+L++G N
Sbjct: 80 LLTLILSYNRLRCIPPRT-FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 74.6 bits (184), Expect = 1e-15
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLE 429
+P GI L + N T +P +L + LT ++L N+IS LS N+ L
Sbjct: 25 LPKGIPRDVTEL---YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 430 VLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQL 484
L+LS N L+ +P L+ L+ L L N + +P F L L L + +N L
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA-FNDLSALSHLAIGANPL 138
Score = 74.6 bits (184), Expect = 1e-15
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 127 EELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSL-ANLQQLRVLDLRHNKLNEL 185
ELYL GN+ +P ++ +LT + L+ N +++L + +N+ QL L L +N+L +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 186 PMVVY-KLTSLKILYLRFNRIKTVHPD--IQYLSNLSMLSMRDN 226
P + L SL++L L N I V P+ LS LS L++ N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGAN 136
Score = 70.4 bits (173), Expect = 4e-14
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 105 NLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP 163
L L + T +P + HL + L N++++L +Q +T L L L+ N L +P
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 164 DSL-ANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHP-----DIQYLS 216
L+ LR+L L N ++ +P + L++L L + N P ++Q+LS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN------PLYCDCNMQWLS 148
Query: 217 N 217
+
Sbjct: 149 D 149
Score = 64.6 bits (158), Expect = 4e-12
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 135 KLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVY-KLT 193
L LP I ++T L L N T +P L+N + L ++DL +N+++ L + +T
Sbjct: 21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 194 SLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHN 249
L L L +NR++ + P L +L +LS+ N I +P +L L L + N
Sbjct: 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 61.9 bits (151), Expect = 3e-11
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 288 TRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAY 347
T L L N+ VP+ LS HL ++ +S+L + S++T + + LS N+
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 348 PSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD 398
P S+ ++ N I +P G F+ LS + + N PL
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN-----PLY 139
Score = 61.5 bits (150), Expect = 3e-11
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 23/123 (18%)
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
L + N+ +P EL K+L +DL++N + L
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS----------------------NQS 73
Query: 281 LGNLINLTRLRLSYNRLESVPE-TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITL 339
N+ L L LSYNRL +P T L ++ G +S +P+G + L++++++ +
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133
Query: 340 SRN 342
N
Sbjct: 134 GAN 136
Score = 53.5 bits (129), Expect = 2e-08
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 460 KLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEI-GTLE 518
L+ LP I +++ L L NQ +P+ + + +L+ + + N + ++ + +
Sbjct: 21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 519 NLHTLYLNDN--TCLNNIPFE-LALCSNLQIMSLDNCPLSQIP 558
L TL L+ N C+ F+ L +L+++SL +S +P
Sbjct: 79 QLLTLILSYNRLRCIPPRTFDGL---KSLRLLSLHGNDISVVP 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 78.2 bits (193), Expect = 8e-17
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 405 LTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESL 464
EL+ I K+ + L + L LS N ++K+ SS+ + L+ L L N ++ +
Sbjct: 27 KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKI 85
Query: 465 PNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPE--EIGTLENLHT 522
N L+ L + NQ+ SL I L NL L + N + + E ++ L+ L
Sbjct: 86 ENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144
Query: 523 LYLNDNTCLNNIPFE 537
L L N N+
Sbjct: 145 LLLAGNPLYNDYKEN 159
Score = 75.9 bits (187), Expect = 5e-16
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 121 EKLTHLEELYLYG--NKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLR 178
T E++ L+G + + + + + L L+ N++ + SL+ ++ LR+L L
Sbjct: 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLG 78
Query: 179 HNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPP--ELG 236
N + ++ + +L+ L++ +N+I ++ I+ L NL +L M +NKI +L
Sbjct: 79 RNLIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLA 137
Query: 237 ELKNLVTLDLAHNHLEELPKE 257
L L L LA N L KE
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKE 158
Score = 70.1 bits (172), Expect = 4e-14
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 198 LYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKE 257
L+ I+ + + L L++ N I ++ L ++NL L L N ++++
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENL 88
Query: 258 IGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE--TLSKCVHLNEFNV 315
L L + +N++ ++ + L+NL L +S N++ + E L+ L + +
Sbjct: 89 DAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147
Query: 316 EG 317
G
Sbjct: 148 AG 149
Score = 50.8 bits (122), Expect = 2e-07
Identities = 38/218 (17%), Positives = 66/218 (30%), Gaps = 64/218 (29%)
Query: 251 LEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHL 310
EE + V L + + L L L LS N +E + +LS +L
Sbjct: 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENL 72
Query: 311 NEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDK 370
++ + + + L + ++ + +S +NQI
Sbjct: 73 RILSLGRNLIKKI-ENLDAVADTLEELWIS------------------------YNQIAS 107
Query: 371 IPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSE--DIQNLVNL 428
+ + K L + L L + N+I+ E + L L
Sbjct: 108 L--------SGIEK-------LVN----------LRVLYMSNNKITNWGEIDKLAALDKL 142
Query: 429 EVLVLSNNLLKKLPSS-----------IGNLRKLKCLD 455
E L+L+ N L + L LK LD
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 75.8 bits (187), Expect = 3e-16
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 105 NLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL 162
L+L + + LP V +KLT L +L L N++ SLP + +T LT L L EN L SL
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 163 P----DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSN 217
P D L L++ L L N+L +P ++ +LTSL+ ++L N P I YLS
Sbjct: 92 PNGVFDKLTQLKE---LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 148
Score = 75.4 bits (186), Expect = 5e-16
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 426 VNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSN 482
+ L L +N L+ LP + L +L L L +N+++SLP+ + F L +L L L N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-FDKLTKLTILYLHEN 86
Query: 483 QLVSLPRAI-GHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
+L SLP + LT L L++ N L+S+P+ I L +L ++L+ N
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 73.5 bits (181), Expect = 2e-15
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 406 TELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLES 463
T L L +N++ L + L L L LS N ++ LP + L KL L L ENKL+S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 464 LPNEIGF--LKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGEN 505
LPN + F L +L+ L L +NQL S+P LT+L + + N
Sbjct: 91 LPNGV-FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 68.8 bits (169), Expect = 9e-14
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 127 EELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP----DSLANLQQLRVLDLRHNK 181
L L NKL SLP + +T LT L L++N + SLP D L L L L NK
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI---LYLHENK 87
Query: 182 LNELPMVVY-KLTSLKILYLRFNRIKTV-HPDIQYLSNLSMLSMRDN 226
L LP V+ KLT LK L L N++K+V L++L + + N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 63.4 bits (155), Expect = 7e-12
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 454 LDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSI 510
L+LE NKL+SLP+ + F L +L +L L NQ+ SLP + LT L+ L + EN LQS+
Sbjct: 33 LELESNKLQSLPHGV-FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 511 PEEI-GTLENLHTLYLNDNTCLNNIP 535
P + L L L L+ N L ++P
Sbjct: 92 PNGVFDKLTQLKELALDTNQ-LKSVP 116
Score = 58.0 bits (141), Expect = 4e-10
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 127 EELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP----DSLANLQQLRVLDLRHNKL 182
E+ L S+P+ I ++ T L L N L SLP D L L + L L N++
Sbjct: 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTK---LSLSQNQI 64
Query: 183 NELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPE-LGELK 239
LP V+ KLT L ILYL N+++++ + L+ L L++ N+++ +P L
Sbjct: 65 QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124
Query: 240 NLVTLDLAHN 249
+L + L N
Sbjct: 125 SLQKIWLHTN 134
Score = 55.7 bits (135), Expect = 3e-09
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 276 NIPDMLGNLINLTRLRLSYNRLESVPETL-SKCVHLNEFNVEGCALSSLPDGLLSSLTSI 334
IP + TRL L N+L+S+P + K L + ++ + SLPDG+ LT +
Sbjct: 25 GIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 335 NNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
+ L NK + P+G + T + + + NQ+ +P GIF R +L K+ + N
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 55.3 bits (134), Expect = 3e-09
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 193 TSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNH 250
+S L L N+++++ + L+ L+ LS+ N+I+ LP + +L L L L N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 251 LEELPKEI-GNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYN 295
L+ LP + T L L L N+L ++PD + L +L ++ L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 54.2 bits (131), Expect = 1e-08
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
+ L LS++ I LP V +KLT L LYL+ NKL SLP+ + +T L L L N L
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Query: 160 TSLP----DSLANLQQL 172
S+P D L +LQ++
Sbjct: 113 KSVPDGIFDRLTSLQKI 129
Score = 53.4 bits (129), Expect = 2e-08
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 26/125 (20%)
Query: 221 LSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIP 278
L + NK++ LP + +L L L L+ N ++ LP + T L L L N+L ++P
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 279 D-MLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNI 337
+ + L L L L N+L+SV PDG+ LTS+ I
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSV-----------------------PDGIFDRLTSLQKI 129
Query: 338 TLSRN 342
L N
Sbjct: 130 WLHTN 134
Score = 50.7 bits (122), Expect = 2e-07
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
L+S+P G+ SS T + L NK + P G + T + ++ NQI +P G+F +
Sbjct: 19 LTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 380 KNLSKVNMKDNLLTSLP---LDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSN 435
L+ + + +N L SLP D T L EL L TNQ+ + + I L +L+ + L
Sbjct: 76 TKLTILYLHENKLQSLPNGVFDKLT--QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133
Query: 436 N 436
N
Sbjct: 134 N 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 76.2 bits (188), Expect = 3e-16
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 429 EVLVLSNNLLKKLPSS--IGNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQL 484
L+L++N L ++ S G L L L+L+ N+L + F +Q L L N++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKI 90
Query: 485 VSLPRAI-GHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
+ + L L L++ +N + + L +L +L L N
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 74.7 bits (184), Expect = 1e-15
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSED--IQNLVNLEVLVLSNNLLKKLPSSI-GNL 448
L +P D+ TEL L N++ ++S D L +L L L N L + +
Sbjct: 20 LKEIPRDIPLHT--TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 449 RKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPR-AIGHLTNLSYLSVGEN 505
++ L L ENK++ + N++ F L +L+ L L NQ+ + + HL +L+ L++ N
Sbjct: 78 SHIQELQLGENKIKEISNKM-FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 71.6 bits (176), Expect = 1e-14
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 124 THLEELYLYGNKLASLPSQ--IGYVTNLTCLGLAENSLTSLP----DSLANLQQLRVLDL 177
H EL L N+L + S G + +L L L N LT + + +++Q+ L L
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE---LQL 85
Query: 178 RHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDN 226
NK+ E+ ++ L LK L L N+I V P ++L++L+ L++ N
Sbjct: 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 66.6 bits (163), Expect = 7e-13
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 105 NLDLSKSSITHLPPS--VEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTS 161
L L+ + + + +L HL +L L N+L + +++ L L EN +
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 162 LPDSL-ANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHP-----DIQY 214
+ + + L QL+ L+L N+++ + + L SL L L N P + +
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN------PFNCNCHLAW 146
Query: 215 LSN 217
+
Sbjct: 147 FAE 149
Score = 58.9 bits (143), Expect = 3e-10
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 102 NILNLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSL 159
+++ L+L ++ +T + P+ E +H++EL L NK+ + +++ + L L L +N +
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 160 TSLP----DSLANLQQL 172
+ + + L +L L
Sbjct: 115 SCVMPGSFEHLNSLTSL 131
Score = 58.9 bits (143), Expect = 3e-10
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 288 TRLRLSYNRLESVPET--LSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345
T L L+ N L + + HL + ++ L+ + + I + L NK
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 346 AYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLD------- 398
+ + ++N NQI + G F +L+ +N+ N P +
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-----PFNCNCHLAW 146
Query: 399 LGTWVG 404
W+
Sbjct: 147 FAEWLR 152
Score = 57.3 bits (139), Expect = 1e-09
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 193 TSLKILYLRFNRIKTVHPD--IQYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHN 249
L L N + + D L +L L ++ N++ + P ++ L L N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 250 HLEELPKEI-GNCTMLVTLDLQHNELVNIPDMLG---NLINLTRLRLSYN 295
++E+ ++ L TL+L N++ + G +L +LT L L+ N
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASN 136
Score = 55.8 bits (135), Expect = 3e-09
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGP-TQFTSVYSINFEHNQIDKIPYGIFSR 378
L +P + T + L+ N+ S G + + + + NQ+ I F
Sbjct: 20 LKEIPRDIPLHTTELL---LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76
Query: 379 AKNLSKVNMKDNLLTSLPLDLGTWVGLTE---LNLGTNQISKLSEDI-QNLVNLEVLVLS 434
A ++ ++ + +N + + ++GL + LNL NQIS + ++L +L L L+
Sbjct: 77 ASHIQELQLGENKIKEIS--NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Query: 435 NN 436
+N
Sbjct: 135 SN 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 75.8 bits (187), Expect = 9e-15
Identities = 66/409 (16%), Positives = 131/409 (32%), Gaps = 70/409 (17%)
Query: 124 THLEELYLYGNKL--ASLPSQIGYVTNLTCLGLAENSLT-----SLPDSLANLQQLRVLD 176
++ L + +L A + + + L + LT + +L L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 177 LRHNKLNE------LPMVVYKLTSLKILYLRFNRI-----KTVHPDIQYLSNLSMLSMRD 225
LR N+L + L + ++ L L+ + + ++ L L L + D
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 226 NKIRE------LPPELGELKNLVTLDLAHNHL-----EELPKEIGNCTMLVTLDLQHNEL 274
N + + L L L L + L E L + L + +N++
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 275 -----VNIPDMLG-NLINLTRLRLSYNRL-----ESVPETLSKCVHLNEFNVEGCALS-- 321
+ L + L L+L + + ++ L E + L
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242
Query: 322 ---SLPDGLLSSLTSINNITLSRNKFTA----YPSGGPTQFTSVYSINFEHNQID----- 369
L GLL + + + + TA S+ ++ N++
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302
Query: 370 KIPYGIFSRAKNLSKVNMKDNLLTS-----LPLDLGTWVGLTELNLGTNQIS-----KLS 419
+ + L + +K T+ L L EL + N++ +L
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362
Query: 420 EDI-QNLVNLEVLVLSNNLL-----KKLPSSIGNLRKLKCLDLEENKLE 462
+ + Q L VL L++ + L +++ L+ LDL N L
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
Score = 72.7 bits (179), Expect = 1e-13
Identities = 75/429 (17%), Positives = 141/429 (32%), Gaps = 82/429 (19%)
Query: 97 RCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKL-----ASLPSQIGYV-TNLT 150
+C+ + + L+++ + ++ L EL L N+L + + +
Sbjct: 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88
Query: 151 CLGLAENSLT-----SLPDSLANLQQLRVLDLRHNKLNE------LPMVVYKLTSLKILY 199
L L LT L +L L L+ L L N L + ++ L+ L
Sbjct: 89 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148
Query: 200 LRFNRI-----KTVHPDIQYLSNLSMLSMRDNKI-----RELPPELGELK-NLVTLDLAH 248
L + + + + ++ + L++ +N I R L L + L L L
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208
Query: 249 NHL-----EELPKEIGNCTMLVTLDLQHNELVN------IPDMLGNLINLTRLRLSYNRL 297
+ +L + + L L L N+L + P +L L L + +
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268
Query: 298 -----ESVPETLSKCVHLNEFNVEGCALS-----SLPDGLLSSLTSINNITLSRNKFTA- 346
+ L L E ++ G L L + LL + ++ + FTA
Sbjct: 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328
Query: 347 ---YPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWV 403
+ S Q + + +N+++ G+ + L +
Sbjct: 329 CCSHFSSVLAQNRFLLELQISNNRLE--DAGVRELCQGLGQPGSV--------------- 371
Query: 404 GLTELNLGTNQISK-----LSEDIQNLVNLEVLVLSNNLL-----KKLPSSI-GNLRKLK 452
L L L +S L+ + +L L LSNN L +L S+ L+
Sbjct: 372 -LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 430
Query: 453 CLDLEENKL 461
L L +
Sbjct: 431 QLVLYDIYW 439
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 70.8 bits (174), Expect = 2e-14
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 8/134 (5%)
Query: 164 DSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSM 223
N + R LDLR K+ + + L + N I+ + L L L +
Sbjct: 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71
Query: 224 RDNKIRELPPELGE-LKNLVTLDLAHNHLEELP--KEIGNCTMLVTLDLQHNELVNIPD- 279
+N+I + L + L +L L L +N L EL + + L L + N + N
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131
Query: 280 ---MLGNLINLTRL 290
++ + + L
Sbjct: 132 RLYVIYKVPQVRVL 145
Score = 69.7 bits (171), Expect = 4e-14
Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 408 LNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNE 467
+ L I + ++ N V L L + + + L + +D +N++ L
Sbjct: 2 VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG- 59
Query: 468 IGFLKELQRLILQSNQLVSLPRAIGH-LTNLSYLSVGENNLQSIPE--EIGTLENLHTLY 524
L+ L+ L++ +N++ + + L +L+ L + N+L + + + +L++L L
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119
Query: 525 LNDNTC 530
+ N
Sbjct: 120 ILRNPV 125
Score = 65.8 bits (161), Expect = 8e-13
Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 6/132 (4%)
Query: 430 VLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPR 489
++ L+ L+++ N + + LDL K+ + N L + + N++ L
Sbjct: 1 MVKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-D 58
Query: 490 AIGHLTNLSYLSVGENNLQSIPEEIGT-LENLHTLYLNDN--TCLNNIPFELALCSNLQI 546
L L L V N + I E + L +L L L +N L ++ LA +L
Sbjct: 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD-PLASLKSLTY 117
Query: 547 MSLDNCPLSQIP 558
+ + P++
Sbjct: 118 LCILRNPVTNKK 129
Score = 60.8 bits (148), Expect = 5e-11
Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 7/131 (5%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDS 165
+ L+ I EL L G K+ + + + + ++N + L D
Sbjct: 2 VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59
Query: 166 LANLQQLRVLDLRHNKLNEL-PMVVYKLTSLKILYLRFNRIKTVHPDIQYLS---NLSML 221
L++L+ L + +N++ + + L L L L N + + D+ L+ +L+ L
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-DLDPLASLKSLTYL 118
Query: 222 SMRDNKIRELP 232
+ N +
Sbjct: 119 CILRNPVTNKK 129
Score = 56.6 bits (137), Expect = 1e-09
Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 10/138 (7%)
Query: 101 ENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLT 160
LDL I + L + + N++ L + L L + N +
Sbjct: 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC 77
Query: 161 SLPDSLA-NLQQLRVLDLRHNKLNELPMVVY--KLTSLKILYLRFNRIKTVHPD-----I 212
+ + L L L L L +N L EL + L SL L + N + T I
Sbjct: 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVI 136
Query: 213 QYLSNLSMLSMRDNKIRE 230
+ + +L + K++E
Sbjct: 137 YKVPQVRVLDFQKVKLKE 154
Score = 53.9 bits (130), Expect = 1e-08
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 244 LDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPET 303
+ L +E+ + N LDL+ ++ I ++ L + S N + + +
Sbjct: 2 VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59
Query: 304 LSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNK 343
L V + + +GL +L + + L+ N
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99
Score = 53.9 bits (130), Expect = 1e-08
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 4/114 (3%)
Query: 215 LSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNEL 274
L +R KI + L +D + N + +L L TL + +N +
Sbjct: 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRI 76
Query: 275 VNIPDMLG-NLINLTRLRLSYNRLESVPE--TLSKCVHLNEFNVEGCALSSLPD 325
I + L L +LT L L+ N L + + L+ L + +++
Sbjct: 77 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130
Score = 42.7 bits (101), Expect = 7e-05
Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 33/179 (18%)
Query: 290 LRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPS 349
++L+ +E + + V E ++ G + + + L ++L + I S N+
Sbjct: 2 VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR--KL 57
Query: 350 GGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELN 409
G + ++ +N+I +I + L +LP LTEL
Sbjct: 58 DGFPLLRRLKTLLVNNNRICRIG----------------EGLDQALPD-------LTELI 94
Query: 410 LGTNQISKLSE--DIQNLVNLEVLVLSNNLLKKLPS----SIGNLRKLKCLDLEENKLE 462
L N + +L + + +L +L L + N + I + +++ LD ++ KL+
Sbjct: 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 72.1 bits (177), Expect = 1e-13
Identities = 54/313 (17%), Positives = 99/313 (31%), Gaps = 72/313 (23%)
Query: 103 ILNLDLSKSSIT-----HLPPSVEKLTHLEELYLYGNKL-----ASLPSQIGYVTNLTCL 152
I L +IT + + + ++E+ L GN + L I +L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 153 GLAENS-----------LTSLPDSLANLQQLRVLDLRHNKLNE-----LPMVVYKLTSLK 196
++ L L +L +L + L N L + K T L+
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 197 ILYLRFNRI--------------KTVHPDIQYLSNLSMLSMRDNKIRE-----LPPELGE 237
LYL N + V+ + L + N++
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185
Query: 238 LKNLVTLDLAHNHLEE------LPKEIGNCTMLVTLDLQHNEL-----VNIPDMLGNLIN 286
+ L T+ + N + L + + C L LDLQ N + L + N
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245
Query: 287 LTRLRLSYNRL-----ESVPETLSKCVHL---------NEFNVEGCALSSLPDGLLSSLT 332
L L L+ L +V + SK ++ NE ++ +L + +
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV--RTLKTVIDEKMP 303
Query: 333 SINNITLSRNKFT 345
+ + L+ N+F+
Sbjct: 304 DLLFLELNGNRFS 316
Score = 62.8 bits (153), Expect = 9e-11
Identities = 61/361 (16%), Positives = 107/361 (29%), Gaps = 99/361 (27%)
Query: 149 LTCLGLAENSLTS-----LPDSLANLQQLRVLDLRHNKLNE-----LPMVVYKLTSLKIL 198
+ L +++T+ + L ++ + L N + L + L+I
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 199 YLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHL-----EE 253
V +I L +L L + L T+ L+ N E
Sbjct: 66 EFSDIFTGRVKDEI--PEALRLLL----------QALLKCPKLHTVRLSDNAFGPTAQEP 113
Query: 254 LPKEIGNCTMLVTLDLQHNEL-----VNIPDMLGNLI---------NLTRLRLSYNRLES 299
L + T L L L +N L I L L L + NRLE+
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173
Query: 300 VPETLSKCVHLNEFNVEGC-ALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSV 358
+ S ++ + + +N P G
Sbjct: 174 ----------------GSMKEWAKT----FQSHRLLHTVKMVQNGIR--PEGIEHLLLEG 211
Query: 359 YSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLT-----SLPLDLGTWVGLTELNLGTN 413
+ + L ++++DN T +L + L +W L EL L
Sbjct: 212 LAYC-----------------QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254
Query: 414 QIS-----KLSEDIQNLVN--LEVLVLSNNLL-----KKLPSSIG-NLRKLKCLDLEENK 460
+S + + L N L+ L L N + + L + I + L L+L N+
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314
Query: 461 L 461
Sbjct: 315 F 315
Score = 55.5 bits (134), Expect = 2e-08
Identities = 47/324 (14%), Positives = 96/324 (29%), Gaps = 81/324 (25%)
Query: 241 LVTLDLAHNHL-----EELPKEIGNCTMLVTLDLQHNEL-----VNIPDMLGNLINLTRL 290
+ L + + + + + + + L N + + + + + +L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 291 RLSYNRL-ESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPS 349
S E L + L ++ + LS N F P+
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFG--PT 109
Query: 350 GGP------TQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWV 403
++ T + + +N + P A+ L ++ + +
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLG--PQAGAKIARALQELAVNKKAKNAP-------- 159
Query: 404 GLTELNLGTNQI-----SKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGN--LRKLKCLDL 456
L + G N++ + ++ Q+ L + + N I + L L
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-------GIRPEGIEHLLLEGL 212
Query: 457 EENKLESLPNEIGFLKELQRLILQSNQL-----VSLPRAIGHLTNLSYLSVGENNL---- 507
+ EL+ L LQ N +L A+ NL L + + L
Sbjct: 213 AYCQ------------ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260
Query: 508 -QSIPEEIGTLEN--LHTLYLNDN 528
++ + LEN L TL L N
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYN 284
Score = 46.6 bits (111), Expect = 1e-05
Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 45/196 (22%)
Query: 405 LTELNLGTNQISK-----------LSEDIQNLVNLEVLVLSNNLL-----KKLPSSIGNL 448
L + L + + L + LS+N + L +
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121
Query: 449 RKLKCLDLEENKL---------ESLPNEIGFLKE-----LQRLILQSNQL-----VSLPR 489
L+ L L N L +L K L+ +I N+L +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181
Query: 490 AIGHLTNLSYLSVGENNLQS------IPEEIGTLENLHTLYLNDNT----CLNNIPFELA 539
L + + +N ++ + E + + L L L DNT + + L
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241
Query: 540 LCSNLQIMSLDNCPLS 555
NL+ + L++C LS
Sbjct: 242 SWPNLRELGLNDCLLS 257
Score = 33.9 bits (78), Expect = 0.14
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 49/165 (29%)
Query: 405 LTELNLGTNQIS-----KLSEDIQNLVNLEVLVLSNNLL-----KKLPSSIGNLRKLKCL 454
+ +L + I+ + + +++ +VLS N + + L +I + + L+
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 455 DLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEI 514
+ + + +EI L+ + + +
Sbjct: 66 EFSDIFTGRVKDEI-----------------------------------PEALRLLLQAL 90
Query: 515 GTLENLHTLYLNDN----TCLNNIPFELALCSNLQIMSLDNCPLS 555
LHT+ L+DN T + L+ + L+ + L N L
Sbjct: 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135
Score = 33.5 bits (77), Expect = 0.20
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 18/101 (17%)
Query: 102 NILNLDLSKSSIT-----HLPPSVEKLTHLEELYLYGNKL-----ASLPSQIGYVTN--L 149
+ LDL ++ T L +++ +L EL L L A++ + N L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276
Query: 150 TCLGLAENSLT-----SLPDSLA-NLQQLRVLDLRHNKLNE 184
L L N + +L + + L L+L N+ +E
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 67.5 bits (164), Expect = 2e-12
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 24/135 (17%)
Query: 97 RCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAE 156
C L ++ + +L ELY+
Sbjct: 4 ACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ---------------------- 41
Query: 157 NSLTSLPD-SLANLQQLRVLDLRHNKLNELPM-VVYKLTSLKILYLRFNRIKTVHPDIQY 214
L L L L +LR L + + L + + L L L FN ++++
Sbjct: 42 QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101
Query: 215 LSNLSMLSMRDNKIR 229
+L L + N +
Sbjct: 102 GLSLQELVLSGNPLH 116
Score = 67.5 bits (164), Expect = 2e-12
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 147 TNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNK-LNELP-MVVYKLTSLKILYLRFNR 204
+ L C + L + L L + + + L L + L L+ L + +
Sbjct: 11 SGLRCT---RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 205 IKTVHPDI-QYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHL 251
++ V PD + LS L++ N + L + + +L L L+ N L
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Score = 65.1 bits (158), Expect = 2e-11
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 434 SNNLLKKLPSSIGNLRKLKCLDLEENK-LESLPNE-IGFLKELQRLILQSNQLVSLPR-A 490
+ + + L L +E + L+ L + L EL+ L + + L + A
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 491 IGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDN 528
LS L++ N L+S+ + +L L L+ N
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 60.1 bits (145), Expect = 6e-10
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 420 EDIQNLVNLEVLVLS-NNLLKKLPS-SIGNLRKLKCLDLEENKLESLPNEI-GFLKELQR 476
+ NL L + L+ L + L +L+ L + ++ L + + F L R
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 477 LILQSNQLVSLPRAIGHLTNLSYLSVGENNLQ 508
L L N L SL +L L + N L
Sbjct: 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 59.8 bits (144), Expect = 7e-10
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
Query: 380 KNLSKVNMKDNLLTSLPLDLGTWVGLTELNL-GTNQISKL-SEDIQNLVNLEVLVLSNNL 437
S + + L LTEL + + L D++ L L L + +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 438 LKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLV 485
L+ + +L L+L N LESL + LQ L+L N L
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 56.7 bits (136), Expect = 7e-09
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 210 PDIQYLSNLSMLSMRDNK-IRELPPE-LGELKNLVTLDLAHNHLEELPKEI-GNCTMLVT 266
+ NL+ L + + + ++ L L L L L + + L + + L
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 267 LDLQHNELVNIPDMLGNLINLTRLRLSYNRL 297
L+L N L ++ ++L L LS N L
Sbjct: 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Score = 56.3 bits (135), Expect = 1e-08
Identities = 25/153 (16%), Positives = 40/153 (26%), Gaps = 46/153 (30%)
Query: 261 CTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCAL 320
L + ++ L NLT L + + L
Sbjct: 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQH----------------------L 44
Query: 321 SSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAK 380
L L L + N+T+ + + + F
Sbjct: 45 QHLELRDLRGLGELRNLTIV------------------------KSGLRFVAPDAFHFTP 80
Query: 381 NLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTN 413
LS++N+ N L SL + L EL L N
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 50.9 bits (121), Expect = 5e-07
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 454 LDLEENKLESLPNEIGFLKELQRLILQSNQ-LVSLPR-AIGHLTNLSYLSVGENNLQSIP 511
L + + + + L L +++ Q L L + L L L++ ++ L+ +
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72
Query: 512 EEIGT-LENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPL 554
+ L L L+ N L ++ ++ +LQ + L PL
Sbjct: 73 PDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115
Score = 42.8 bits (100), Expect = 2e-04
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 504 ENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCPLSQIPSEIV 562
+ + ENL LY+ + L ++ L L+ +++ L + +
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 563 VGGPSLIIRYLKMQG 577
P L L +
Sbjct: 77 HFTPRL--SRLNLSF 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 64.0 bits (156), Expect = 3e-12
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 10/152 (6%)
Query: 89 LNIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTN 148
+++E L LD KS+ + + +LE L L L S+ S + +
Sbjct: 14 IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPK 72
Query: 149 LTCLGLAENSLTSLPDSLA-NLQQLRVLDLRHNKLNELPMVVY--KLTSLKILYLRFNRI 205
L L L+EN + D LA L L L+L NKL ++ + KL LK L L +
Sbjct: 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
Query: 206 KTVHPD-----IQYLSNLSMLSMRDNKIRELP 232
T D + L L+ L D + +E P
Sbjct: 133 -TNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163
Score = 54.0 bits (130), Expect = 1e-08
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 404 GLTELNLGTNQ--ISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKL 461
+ EL L + K+ VNLE L L N L + S++ L KLK L+L EN++
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRI 83
Query: 462 ESLPNEIG-FLKELQRLILQSNQLVSLP--RAIGHLTNLSYLSVGENNLQSIPE 512
+ + L L L L N+L + + L L L + + ++ +
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 50.9 bits (122), Expect = 1e-07
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
L + ++ E NL L L + L + + L L+L N + DM
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRIFGGLDM 89
Query: 281 LG-NLINLTRLRLSYNRLESVPE--TLSKCVHLNEFNVEGCALSSLPD 325
L L NLT L LS N+L+ + L K L ++ C +++L D
Sbjct: 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 49.7 bits (119), Expect = 3e-07
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 16/141 (11%)
Query: 421 DIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQ 480
D++ ++LE+ + +++L LD ++ + L+ L L
Sbjct: 9 DMKRRIHLELRNRTPAAVREL-----------VLDNCKSNDGKIEGLTAEFVNLEFLSLI 57
Query: 481 SNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGT-LENLHTLYLNDN--TCLNNIPFE 537
+ L+S+ + L L L + EN + + + L NL L L+ N ++ +
Sbjct: 58 NVGLISVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EP 115
Query: 538 LALCSNLQIMSLDNCPLSQIP 558
L L+ + L NC ++ +
Sbjct: 116 LKKLECLKSLDLFNCEVTNLN 136
Score = 42.8 bits (101), Expect = 6e-05
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 237 ELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNR 296
++K + L+L + + +E+ LD + I + +NL L L
Sbjct: 9 DMKRRIHLELRNRTPAAV-REL-------VLDNCKSNDGKIEGLTAEFVNLEFLSLINVG 60
Query: 297 LESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345
L SV L K L + + + D L L ++ ++ LS NK
Sbjct: 61 LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
Score = 37.4 bits (87), Expect = 0.004
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 454 LDLEENKLESLPN-EIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPE 512
+D++ L N ++EL L + + NL +LS+ L S+
Sbjct: 8 MDMKRRIHLELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S 65
Query: 513 EIGTLENLHTLYLNDNTCLNNIPFELALCSNLQIMSLDNCPLSQI 557
+ L L L L++N + NL ++L L I
Sbjct: 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
Score = 34.3 bits (79), Expect = 0.047
Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 55/179 (30%)
Query: 290 LRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPS 349
L + + ++ V+L ++ L S+ + L L + + LS
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS--------- 79
Query: 350 GGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELN 409
N+I D L LP LT LN
Sbjct: 80 ---------------ENRIFGGL----------------DMLAEKLPN-------LTHLN 101
Query: 410 LGTNQISKLSE--DIQNLVNLEVLVLSNNLLKKLP----SSIGNLRKLKCLDLEENKLE 462
L N++ +S ++ L L+ L L N + L S L +L LD + + +
Sbjct: 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 63.0 bits (154), Expect = 8e-12
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 434 SNNLLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAI 491
S L +P+ I + L L +N++ L + F L +L RL L +NQL LP +
Sbjct: 17 SGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGV 73
Query: 492 -GHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
LT L+ LS+ +N L+SIP L++L ++L +N
Sbjct: 74 FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 62.6 bits (153), Expect = 1e-11
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP- 163
+D S S+ +P + T + LYLY N++ L + +T LT L L N LT LP
Sbjct: 14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71
Query: 164 ---DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSN 217
D L L Q L L N+L +P + L SL ++L N DI YLS
Sbjct: 72 GVFDKLTQLTQ---LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSR 126
Score = 61.9 bits (151), Expect = 2e-11
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 127 EELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP----DSLANLQQLRVLDLRHNKL 182
+ G LAS+P+ I T L L +N +T L D L L +L DL +N+L
Sbjct: 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRL---DLDNNQL 66
Query: 183 NELPMVVY-KLTSLKILYLRFNRIKTV 208
LP V+ KLT L L L N++K++
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Score = 59.2 bits (144), Expect = 2e-10
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 105 NLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL 162
L L + IT L P V ++LT L L L N+L LP+ + +T LT L L +N L S+
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 163 P----DSLANLQQL 172
P D+L +L +
Sbjct: 94 PRGAFDNLKSLTHI 107
Score = 58.4 bits (142), Expect = 3e-10
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 385 VNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPS 443
V+ L S+P G L L NQI+KL + L L L L NN L LP+
Sbjct: 14 VDCSGKSLASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71
Query: 444 SI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSN 482
+ L +L L L +N+L+S+P F LK L + L +N
Sbjct: 72 GVFDKLTQLTQLSLNDNQLKSIPRGA-FDNLKSLTHIWLLNN 112
Score = 57.2 bits (139), Expect = 6e-10
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 426 VNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSN 482
+VL L +N + KL + L +L LDL+ N+L LP + F L +L +L L N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV-FDKLTQLTQLSLNDN 88
Query: 483 QLVSLPR-AIGHLTNLSYLSVGEN 505
QL S+PR A +L +L+++ + N
Sbjct: 89 QLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 54.2 bits (131), Expect = 7e-09
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 454 LDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIPE 512
+D L S+P I Q L L NQ+ L + LT L+ L + N L +P
Sbjct: 14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71
Query: 513 EI-GTLENLHTLYLNDNTCLNNIP 535
+ L L L LNDN L +IP
Sbjct: 72 GVFDKLTQLTQLSLNDNQ-LKSIP 94
Score = 44.1 bits (105), Expect = 2e-05
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 216 SNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNE 273
+ +L + DN+I +L P + L L LDL +N L LP + T L L L N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 274 LVNIPD-MLGNLINLTRLRLSYN 295
L +IP NL +LT + L N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 42.6 bits (101), Expect = 6e-05
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
L+S+P G+ ++ + L N+ T G + T + ++ ++NQ+ +P G+F +
Sbjct: 21 LASVPTGIPTTTQVLY---LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 380 KNLSKVNMKDNLLTSLP 396
L+++++ DN L S+P
Sbjct: 78 TQLTQLSLNDNQLKSIP 94
Score = 41.4 bits (98), Expect = 2e-04
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 27/126 (21%)
Query: 266 TLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETL-SKCVHLNEFNVEGCALSSLP 324
T+D L ++P G L L N++ + + + L +++ L+ LP
Sbjct: 13 TVDCSGKSLASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 325 DGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSK 384
G+ LT + ++L+ NQ+ IP G F K+L+
Sbjct: 71 AGVFDKLTQLTQLSLND------------------------NQLKSIPRGAFDNLKSLTH 106
Query: 385 VNMKDN 390
+ + +N
Sbjct: 107 IWLLNN 112
Score = 41.1 bits (97), Expect = 2e-04
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 25/101 (24%)
Query: 244 LDLAHNHLEELPKEI-GNCTMLVTLDLQHNELVNIPD-MLGNLINLTRLRLSYNRLESVP 301
L L N + +L + T L LDL +N+L +P + L LT+L L+ N+L+S+
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI- 93
Query: 302 ETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRN 342
P G +L S+ +I L N
Sbjct: 94 ----------------------PRGAFDNLKSLTHIWLLNN 112
Score = 38.0 bits (89), Expect = 0.003
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 193 TSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNH 250
T+ ++LYL N+I + P + L+ L+ L + +N++ LP + +L L L L N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 251 LEELPKEI-GNCTMLVTLDLQHN 272
L+ +P+ N L + L +N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 62.7 bits (153), Expect = 1e-11
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 454 LDLEENKLESLPNEIGF--LKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSI 510
L L N++ L + F L LQ+L SN+L ++P + LT L+ L + +N+L+SI
Sbjct: 38 LWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 511 PEEI-GTLENLHTLYLNDN 528
P L++L +YL +N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 61.9 bits (151), Expect = 2e-11
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 106 LDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSLP- 163
++ + +P + T + L+L N++ L + ++ NL L N LT++P
Sbjct: 17 VNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74
Query: 164 ---DSLANLQQLRVLDLRHNKLNELPMVVY-KLTSLKILYLRFNRIKTVHPDIQYLSN 217
D L L Q LDL N L +P + L SL +YL N DI YL N
Sbjct: 75 GVFDKLTQLTQ---LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRN 129
Score = 61.1 bits (149), Expect = 4e-11
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 127 EELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLP----DSLANLQQLRVLDLRHNKL 182
+ +LAS+P+ I T+ L L N +T L D L NLQQL NKL
Sbjct: 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQL---YFNSNKL 69
Query: 183 NELPMVVY-KLTSLKILYLRFNRIKTV 208
+P V+ KLT L L L N +K++
Sbjct: 70 TAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Score = 60.3 bits (147), Expect = 7e-11
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 105 NLDLSKSSITHLPPSV-EKLTHLEELYLYGNKLASLPSQI-GYVTNLTCLGLAENSLTSL 162
L L+ + IT L P V + L +L++LY NKL ++P+ + +T LT L L +N L S+
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 163 P----DSLANLQQL 172
P D+L +L +
Sbjct: 97 PRGAFDNLKSLTHI 110
Score = 58.8 bits (143), Expect = 2e-10
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 385 VNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNNLLKKLPS 443
VN ++ L S+P G L L NQI+KL + +LVNL+ L ++N L +P+
Sbjct: 17 VNCQNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74
Query: 444 SI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSN 482
+ L +L LDL +N L+S+P F LK L + L +N
Sbjct: 75 GVFDKLTQLTQLDLNDNHLKSIPRGA-FDNLKSLTHIYLYNN 115
Score = 57.3 bits (139), Expect = 9e-10
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 426 VNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEENKLESLPNEIGF--LKELQRLILQSN 482
+ + L L+NN + KL + +L L+ L NKL ++P + F L +L +L L N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV-FDKLTQLTQLDLNDN 91
Query: 483 QLVSLPR-AIGHLTNLSYL 500
L S+PR A +L +L+++
Sbjct: 92 HLKSIPRGAFDNLKSLTHI 110
Score = 52.6 bits (127), Expect = 3e-08
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 454 LDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQSIPE 512
++ + +L S+P I + QRL L +NQ+ L + HL NL L N L +IP
Sbjct: 17 VNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74
Query: 513 EI-GTLENLHTLYLNDNTCLNNIP 535
+ L L L LNDN L +IP
Sbjct: 75 GVFDKLTQLTQLDLNDNH-LKSIP 97
Score = 44.2 bits (105), Expect = 2e-05
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 216 SNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNHLEELPKEI-GNCTMLVTLDLQHNE 273
++ L + +N+I +L P + L NL L N L +P + T L LDL N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 274 LVNIPD-MLGNLINLTRLRLSYN 295
L +IP NL +LT + L N
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
Score = 41.5 bits (98), Expect = 2e-04
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 320 LSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRA 379
L+S+P G+ + + L+ N+ T G ++ + F N++ IP G+F +
Sbjct: 24 LASVPAGIPTDKQRLW---LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80
Query: 380 KNLSKVNMKDNLLTSLP 396
L+++++ DN L S+P
Sbjct: 81 TQLTQLDLNDNHLKSIP 97
Score = 40.7 bits (96), Expect = 3e-04
Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 266 TLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETL-SKCVHLNEFNVEGCALSSLP 324
++ Q+ L ++P G + RL L+ N++ + + V+L + L+++P
Sbjct: 16 LVNCQNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 325 DGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSK 384
G+ LT + + L+ N + IP G F K+L+
Sbjct: 74 TGVFDKLTQLTQLDLND------------------------NHLKSIPRGAFDNLKSLTH 109
Query: 385 VNMKDN 390
+ + +N
Sbjct: 110 IYLYNN 115
Score = 38.0 bits (89), Expect = 0.003
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 193 TSLKILYLRFNRIKTVHPDI-QYLSNLSMLSMRDNKIRELPPEL-GELKNLVTLDLAHNH 250
T + L+L N+I + P + +L NL L NK+ +P + +L L LDL NH
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 251 LEELPK 256
L+ +P+
Sbjct: 93 LKSIPR 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 2e-11
Identities = 70/418 (16%), Positives = 124/418 (29%), Gaps = 112/418 (26%)
Query: 88 DLNIEKEF-LRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYV 146
+ F L CK IL K L + L+ +
Sbjct: 255 NAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSM--------------- 296
Query: 147 TNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKL--TSLKILYLRFNR 204
L + + SL L R DL L P + + S++ ++
Sbjct: 297 ------TLTPDEVKSL---LLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDN 346
Query: 205 IKTVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTML 264
K V+ D + ++ ++ + L P E + + + L P
Sbjct: 347 WKHVNCD-------KLTTIIESSLNVLEPA--EYRKM------FDRLSVFPPS------- 384
Query: 265 VTLDLQHNELVNIPDMLGNLINLTRL--RLSYNRLESVPETLSKCVHLNEFNVEGCALSS 322
+IP +L L+ + + + + V L K + + E S
Sbjct: 385 ----------AHIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES--TIS 427
Query: 323 LPDGLLSSLTSINN-ITLSRNKFTAYPSGGPTQFTSVYSIN-FEHNQIDKIPYGIFSR-A 379
+P L + N L R+ Y + + +D+ Y +S
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHY------NIPKTFDSDDLIPPYLDQ--Y-FYSHIG 478
Query: 380 KNLSKVNM--KDNLLTSLPLDLGTWVG--LTELNLGTNQISKLSEDIQNLVN-------- 427
+L + + L + LD ++ + + N + +Q L
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 428 ---LEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLE-SLPNEIGFL-----KELQR 476
E LV N +L LP NL K DL L +L E + K++QR
Sbjct: 538 DPKYERLV--NAILDFLPKIEENLICSKYTDL----LRIALMAEDEAIFEEAHKQVQR 589
Score = 51.0 bits (121), Expect = 9e-07
Identities = 57/400 (14%), Positives = 126/400 (31%), Gaps = 90/400 (22%)
Query: 209 HPDIQYLSNLSMLSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLD 268
H D + + +++ V + ++++PK I L +
Sbjct: 6 HMDFE-------TGEHQYQYKDILSVF--EDAFVD-NFDCKDVQDMPKSI-----LSKEE 50
Query: 269 LQHNELVNIPDMLGNLINLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLL 328
+ H ++ D ++ + L S E + + +F VE L L+
Sbjct: 51 IDH--IIMSKD------AVSGTLRLFWTLLSKQEEMVQ-----KF-VEE-VLRINYKFLM 95
Query: 329 SSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMK 388
S + + PS + + NQ+ Y + SR + K+ +
Sbjct: 96 SPIKTEQRQ----------PSMMTRMYIEQRDRLYNDNQVFA-KYNV-SRLQPYLKL--R 141
Query: 389 DNLLTSLPLDLGTWVGL--------TELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKK 440
LL L V + T + + S +Q ++ ++ L+
Sbjct: 142 QALLE---LRPAKNVLIDGVLGSGKTWV---ALDVCL-SYKVQCKMDFKIFWLNLKNCNS 194
Query: 441 LPSSIGNLRKLKCLDLEEN------KLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHL 494
+ + L+KL ++ N ++ I ++ R +L+S + L
Sbjct: 195 PETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLVL 250
Query: 495 TNLSYLSVGEN-NLQ----------SIPEEIGTLENLHTLYLNDNTCLNNIPFELALCSN 543
N+ NL + + + H + L+ + ++ +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHH----SMTLTPDEVKS 305
Query: 544 LQIMSLDNCPLSQIPSEIVVGGP---SLIIRYLKMQGPYR 580
L + L +C +P E++ P S+I ++ G
Sbjct: 306 LLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIR-DGLAT 343
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 59.7 bits (145), Expect = 7e-11
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 89 LNIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTN 148
+++E + L LD S+S+ L ++ LE L L S+ + + +
Sbjct: 7 IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNK 65
Query: 149 LTCLGLAENSLTSLPDSLA-NLQQLRVLDLRHNKLNELPMVVY--KLTSLKILYLRFN 203
L L L++N ++ + LA L L+L NK+ +L + KL +LK L L
Sbjct: 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 51.2 bits (123), Expect = 7e-08
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 405 LTELNLGTNQIS--KLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRKLKCLDLEENKLE 462
+ EL L ++ + KL LE L N L + +++ L KLK L+L +N++
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVS 77
Query: 463 SLPNEIG-FLKELQRLILQSNQLVSLP--RAIGHLTNLSYLSVGENNLQSIPE 512
+ L L L N++ L + L NL L + + ++ +
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 50.8 bits (122), Expect = 9e-08
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 447 NLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENN 506
++++L LD + L +EL+ L + L S+ + L L L + +N
Sbjct: 18 DVKEL-VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNR 75
Query: 507 LQSIPEEIGT-LENLHTLYLNDN--TCLNNIPFELALCSNLQIMSLDNCPLSQIP 558
+ E + NL L L+ N L+ I L NL+ + L NC ++ +
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVTNLN 129
Score = 50.4 bits (121), Expect = 1e-07
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 221 LSMRDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDM 280
L + +L E + L L + L + + L L+L N + ++
Sbjct: 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82
Query: 281 LG-NLINLTRLRLSYNRLESVPE--TLSKCVHLNEFNVEGCALSSLPD 325
L NLT L LS N+++ + L K +L ++ C +++L D
Sbjct: 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 42.7 bits (101), Expect = 5e-05
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 237 ELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNR 296
E+ + L+L + ++ KE+ LD + + + L L
Sbjct: 2 EMGRRIHLELRNRTPSDV-KEL-------VLDNSRSNEGKLEGLTDEFEELEFLSTINVG 53
Query: 297 LESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFT 345
L S+ L K L + + +S + L ++ ++ LS NK
Sbjct: 54 LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
Score = 36.6 bits (85), Expect = 0.006
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 102 NILNLDLSKSSITHLPPS-VEKLTHLEELYLYGNKLASLPS--QIGYVTNLTCLGLAENS 158
+ L+LS + ++ EK +L L L GNK+ L + + + NL L L
Sbjct: 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
Query: 159 LTSLPD----SLANLQQLRVLD 176
+T+L D L QL LD
Sbjct: 125 VTNLNDYRENVFKLLPQLTYLD 146
Score = 31.2 bits (71), Expect = 0.38
Identities = 31/172 (18%), Positives = 51/172 (29%), Gaps = 55/172 (31%)
Query: 290 LRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPS 349
L S + + + L + L+S+ + L L + + LS
Sbjct: 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELS--------- 72
Query: 350 GGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELN 409
N++ + + N LT LN
Sbjct: 73 ---------------DNRVSGGLEVLAEKCPN-----------------------LTHLN 94
Query: 410 LGTNQISKLSE--DIQNLVNLEVLVLSNNLLKKLP----SSIGNLRKLKCLD 455
L N+I LS ++ L NL+ L L N + L + L +L LD
Sbjct: 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 60.0 bits (145), Expect = 1e-09
Identities = 73/512 (14%), Positives = 148/512 (28%), Gaps = 82/512 (16%)
Query: 102 NILNLDLSKSSITH---LPPSVEKLTHLEELYLYGNKL---ASLPSQIGYVTNLTCLGLA 155
+ ++ + ++ + + LE L L L S + + + L +
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172
Query: 156 ENSLTSLPDS-----LANLQQLRVLDLRHNKLNE-----LPMVVYKLTSLKILYLRFNRI 205
E+S + + L VL+ + + L + SL + + I
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232
Query: 206 KTVHPDIQYLSNLSMLSM----RDNKIRELPPELGELKNLVTLDLAHNHLEELPKEIGNC 261
+ + +NL D + E L + L L L++ E+P
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292
Query: 262 TMLVTLDLQHNELV--NIPDMLGNLINLTRLRLSYN-RLESVPETLSKCVHLNEFNVEGC 318
+ LDL + L + ++ NL L + C L +E
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352
Query: 319 ALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQI-DKIPYGIFS 377
A + ++ I L++ + + + I ++ I +
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQG------------CQELEYMAVYVSDITNESLESIGT 400
Query: 378 RAKNLSKVNMKD----NLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVL 433
KNL + +T LPLD G + L + L +
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNG--------------VRSLLIGCKKLRRFAFYLR 446
Query: 434 SNNLLKKLPSSIG-NLRKLKCLDLEENKL--ESLPNEIGFLKELQRLILQSNQLVSLPRA 490
L S IG ++ + L E L LQ+L
Sbjct: 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL------------- 493
Query: 491 IGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFELAL---CSNLQIM 547
+ E + + + L +L L++ + + N++++
Sbjct: 494 -----EMRGCCFSERAIAAA---VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545
Query: 548 SLDNCP-LSQIPSEIVVGGPSLIIRYLKMQGP 578
P ++Q + P+ I+ Y + G
Sbjct: 546 PSRRVPEVNQQGEIREMEHPAHILAYYSLAGQ 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 5e-08
Identities = 95/529 (17%), Positives = 153/529 (28%), Gaps = 198/529 (37%)
Query: 75 PKPT---TKKKEPI-QADLNIEKEFLRCKEENILNLDLSKSSITHLPPSVEK-LTHLEEL 129
P+PT EP A+L + FL ++ + S + + LT E
Sbjct: 42 PEPTEGFAADDEPTTPAELVGK--FL-----GYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 130 YLYGNKL----ASLPSQIG------------YVTNLTCLGLAENSLTSLPDSLANLQQLR 173
YL GN + A L + Y+T +S L R
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK---RPFDKKSNSA--L--FR 147
Query: 174 VLDLRHNKLNELPMVVYKLTSLKILYLRF----NRIKTVHPDIQYLSNLSMLSMRDNKIR 229
+ + + L F N Y L R
Sbjct: 148 AVGEGNAQ----------------LVAIFGGQGN-------TDDYFEEL----------R 174
Query: 230 EL----PPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVT--LDLQH--NELVNIPDML 281
+L +G+L + + L EL + + + T L++ N PD
Sbjct: 175 DLYQTYHVLVGDL-----IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 282 --------GNLINLTRLRLSY----NRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLS 329
LI + +L Y L P L + + GL++
Sbjct: 230 YLLSIPISCPLIGVIQL-AHYVVTAKLLGFTPGELRSYL---------KGATGHSQGLVT 279
Query: 330 SL-------------TSINNITLSRNKF-------TAYPS----------------GGPT 353
++ + IT+ F AYP+ G P+
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVL---FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 354 QFTSVYSINFEHNQ--IDKI-PYGIFSRAKNLSKVNMKDNL-LTSLPLDLGTWVGLTELN 409
S+ ++ E Q ++K + + +S VN NL ++ P L GL L
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL---YGL-NLT 392
Query: 410 L-------GTNQISK--LSEDIQNLVNLEVLVLSNNLLKKLP------SSIGNLR---KL 451
L G +Q S+ SE L SN LP S + L L
Sbjct: 393 LRKAKAPSGLDQ-SRIPFSE--------RKLKFSNRF---LPVASPFHSHL--LVPASDL 438
Query: 452 KCLDLEENKLESLPNEIGF----------LKELQRLILQS--NQLVSLP 488
DL +N + +I L+ L I + + ++ LP
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 50.8 bits (121), Expect = 1e-06
Identities = 90/562 (16%), Positives = 152/562 (27%), Gaps = 231/562 (41%)
Query: 106 LDLSKSSITH---LPPSVEKLTHLEELYLYGNKL-----ASLPSQIGYVTNLTCLGLA-E 156
L LS S+ H +P + + ++L LP T G A +
Sbjct: 9 LTLSHGSLEHVLLVPTA---------SFFIASQLQEQFNKILPE----PTE----GFAAD 51
Query: 157 NSLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLS 216
+ T+ + + + L + + + + L + F YL
Sbjct: 52 DEPTTPAELVG-----KFLGYVSSLVEPSKVGQFD-QVLNLCLTEFEN--------CYL- 96
Query: 217 NLSMLSMRDNKI----RELPPE----LGELKNLV------------TLDLAHNH--LEEL 254
N I +L E L + K L+ D N +
Sbjct: 97 -------EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 255 PKEI----------GNCTMLVTLDLQHNELVNI----PDMLGNLINLTRLRLSYNRLESV 300
+ GN + EL ++ ++G+LI + L + L
Sbjct: 150 GEGNAQLVAIFGGQGN--TDDYFE----ELRDLYQTYHVLVGDLIKFSAETL--SELIRT 201
Query: 301 PETLSKCVHLNEFNVEGCAL---SSLPDG--LLSSLTSINNITLSRNKFTAYPSGGPTQF 355
K V N+ L S+ PD LLS S I + Q
Sbjct: 202 TLDAEK-VFTQGLNILE-WLENPSNTPDKDYLLSIPISCPLIGV-------------IQL 246
Query: 356 TSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNL--LTSLPLDL---------GTWVG 404
H Y + ++ + ++ L T L +W
Sbjct: 247 A--------H-------YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-- 289
Query: 405 LTELNLGTNQISKLSED-IQNLVN-LEVLVLSNNLLKKLPSSIGNLRKLKC---LDLEEN 459
E ++ + VL IG +R + L +
Sbjct: 290 ---------------ESFFVSVRKAITVLFF-----------IG-VRCYEAYPNTSLPPS 322
Query: 460 KL-ESLPNEIGF-----------LKELQRLILQSNQLVSLPR----AIGHLTNLSYLSVG 503
L +SL N G +++Q + ++N LP I L N G
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS--HLPAGKQVEIS-LVN------G 373
Query: 504 ENNLQSI----PEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQ-IMSLDNCPLSQIP 558
NL + P+ +LY L L+ + S+IP
Sbjct: 374 AKNL--VVSGPPQ---------SLY--------------GLNLTLRKAKAPSGLDQSRIP 408
Query: 559 -SEIVVGGPSLIIRYLKMQGPY 579
SE R+L + P+
Sbjct: 409 FSE---RKLKFSNRFLPVASPF 427
Score = 40.4 bits (94), Expect = 0.002
Identities = 54/298 (18%), Positives = 89/298 (29%), Gaps = 91/298 (30%)
Query: 288 TR-LRLSYNRLE---SVPETL-SKCVHLNE-FNVEGCALSSLP---DGLLSSLTSINNIT 338
TR L LS+ LE VP L E F LP +G +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQF------NKILPEPTEGFAADDEPTTPAE 59
Query: 339 LSRNKFTAY-----PSGGPTQFTSVYSI---NFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
L KF Y QF V ++ FE+ + + ++
Sbjct: 60 LV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---------YLEGND---IHA--- 103
Query: 391 LLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKLPSSIGNLRK 450
L L + T + K E I+N + +++ K +S L
Sbjct: 104 LAAKLLQENDT------------TLVKTKELIKNY--ITARIMAKRPFDKKSNSA--L-- 145
Query: 451 LKCLDLEENKLESL-----PNEIGFLKELQRLILQSNQLVS--LPRAIGHLTNLSYLSVG 503
+ + +L ++ + + +EL+ L + LV + + L+ L
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTD-DYFEELRDLYQTYHVLVGDLIKFSAETLSELI----- 199
Query: 504 ENNLQSIPEEIGTLENLHTLYLNDNTCLNN---IPFELALCSNLQIMSLDNCPLSQIP 558
+ E + T LN L N P + L S P+S P
Sbjct: 200 -----RTTLDA---EKVFTQGLNILEWLENPSNTPDKDYLLS---------IPIS-CP 239
Score = 35.4 bits (81), Expect = 0.072
Identities = 46/247 (18%), Positives = 87/247 (35%), Gaps = 75/247 (30%)
Query: 289 RLRLSYNRL--ESVPETLSKCVHLNEFNVEGCALSSL----PDGLLSSLTSINN-----I 337
R+R +Y+ + E++ + K + F +S GLLS T
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYTFRSEKGLLS-ATQ--FTQPALT 1737
Query: 338 TLSRNKFTAYPSGGPTQFTSV--------YS--------INFEHNQID--KIPYGIFSRA 379
+ + F S G + Y+ ++ E ++ +F R
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE----SLVEV---VFYRG 1790
Query: 380 KNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNL------EVLVL 433
+ +D L S G+ +N G S E +Q +V ++ +
Sbjct: 1791 MTMQVAVPRDELGRSN-------YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 434 SN-NLLKKLPSSI----GNLRKLKCLDLEENKLESLPNEIGFLKELQRL-ILQSNQLVSL 487
N N+ + G+LR L +++ N + F+K LQ++ I++ + +SL
Sbjct: 1844 VNYNV----ENQQYVAAGDLRAL----------DTVTNVLNFIK-LQKIDIIELQKSLSL 1888
Query: 488 PRAIGHL 494
GHL
Sbjct: 1889 EEVEGHL 1895
Score = 30.4 bits (68), Expect = 2.2
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 11/35 (31%)
Query: 550 DNCPLSQIPSEIVVGGP-------SLIIRYLKMQG 577
N Q V G + ++ ++K+Q
Sbjct: 1846 YNVENQQ----YVAAGDLRALDTVTNVLNFIKLQK 1876
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 50.5 bits (121), Expect = 8e-07
Identities = 44/257 (17%), Positives = 94/257 (36%), Gaps = 57/257 (22%)
Query: 94 EFLRCKEENILNLDLSKSSITHLPPSVEKL--------THLEELYLYGNKL-----ASLP 140
+ ++ +L+LS +S+ + ++L ++ L L GN L L
Sbjct: 44 QAFANTPASVTSLNLSGNSLG--FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101
Query: 141 SQIGYV-TNLTCLGLAENSLTS-----LPDSLANL-QQLRVLDLRHNKLNEL------PM 187
+ + +T L L N +S + +NL + L+LR N L +
Sbjct: 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161
Query: 188 VVYKLTSLKILYLRFNRIKTVHPDIQYLS--------NLSMLSMRDNKIR-ELPPELGEL 238
+ ++ L LR N + + + L+ +++ L + N + + EL +
Sbjct: 162 LAAIPANVNSLNLRGNNLASK--NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219
Query: 239 -----KNLVTLDLAHNHL-----EELPKEIGNCTMLVTLDLQHNELVNIPD--------M 280
++V+L+L N L E L + L T+ L ++ + N+
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279
Query: 281 LGNLINLTRLRLSYNRL 297
N+ + + + +
Sbjct: 280 FPNIQKIILVDKNGKEI 296
Score = 48.2 bits (115), Expect = 4e-06
Identities = 63/368 (17%), Positives = 113/368 (30%), Gaps = 80/368 (21%)
Query: 166 LANLQQLRVLDLRHNKLNE------LPMVVYKLTSLKILYLRFNRIKTVHPDIQYL---- 215
+ + LDL N L + S+ L L N + + L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNSDELVQIL 75
Query: 216 ----SNLSMLSMRDNKI-----RELPPELGELK-NLVTLDLAHNHL-----EELPKEIGN 260
+N++ L++ N + EL L + + LDL N E + N
Sbjct: 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135
Query: 261 C-TMLVTLDLQHNEL-----VNIPDMLGNL-INLTRLRLSYNRLESVPETLSKCVHLNEF 313
+ +L+L+ N+L + +L + N+ L L N L S
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS-------------- 181
Query: 314 NVEGCALSSLPDGLLSSLTSINNITLSRNKFT-----AYPSGGPTQFTSVYSINFEHNQI 368
+ CA L L S S+ ++ LS N + V S+N N +
Sbjct: 182 --KNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237
Query: 369 DKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNL 428
+NL + L ++ LD N+ Q L N+ +
Sbjct: 238 HG------PSLENLKLLKDSLKHLQTVYLD-----YDIVKNMSKEQCKALGAAFPNIQKI 286
Query: 429 EVLVLSNN------------LLKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQR 476
++ + L+++L L + K ++ ++ EL+
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346
Query: 477 LILQSNQL 484
I L
Sbjct: 347 SIQTCKPL 354
Score = 40.8 bits (96), Expect = 8e-04
Identities = 53/322 (16%), Positives = 102/322 (31%), Gaps = 82/322 (25%)
Query: 260 NCTMLVTLDLQHNEL-----VNIPDML-GNLINLTRLRLSYNRLESVPETLSKCVHLNEF 313
+ +LDL N L V + ++T L LS N L
Sbjct: 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-------------- 65
Query: 314 NVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGG-------PTQFTSVYSINFEHN 366
+ L L + ++ ++ LS N + ++ ++ N
Sbjct: 66 --KNSD--ELVQILAAIPANVTSLNLSGNFLSY--KSSDELVKTLAAIPFTITVLDLGWN 119
Query: 367 QIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISK-----LSED 421
+ S + +T LNL N + L +
Sbjct: 120 DFSSK--SSSEFKQAFSNLPAS----------------ITSLNLRGNDLGIKSSDELIQI 161
Query: 422 IQNL-VNLEVLVLSNNLL-----KKLPSSIGNL-RKLKCLDLEENKLESLPNEIGFLKEL 474
+ + N+ L L N L +L + ++ + LDL N L + +
Sbjct: 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG----LKSYAELA 217
Query: 475 QRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNI 534
N +VSL NL + +L+++ +L++L T+YL+ + + N+
Sbjct: 218 YIFSSIPNHVVSL--------NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD-IVKNM 268
Query: 535 PFEL------ALCSNLQIMSLD 550
E A + +I+ +D
Sbjct: 269 SKEQCKALGAAFPNIQKIILVD 290
Score = 32.8 bits (75), Expect = 0.34
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 32/168 (19%)
Query: 94 EFLRCKEENILNLDLSKSSITHLPPSVEKL--------THLEELYLYGNKL-----ASLP 140
+FL ++ +LDLS + + S +L H+ L L N L +L
Sbjct: 189 KFLASIPASVTSLDLSANLLGL--KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246
Query: 141 SQIGYVTNLTCLGLAENSLT--------SLPDSLANLQQLRVLDLRHNKLNE-------- 184
+ +L + L + + +L + N+Q++ ++D +++
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306
Query: 185 -LPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIREL 231
+ + K +L + +I+ L+ L + L
Sbjct: 307 LIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 49.5 bits (118), Expect = 2e-06
Identities = 59/498 (11%), Positives = 147/498 (29%), Gaps = 98/498 (19%)
Query: 93 KEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCL 152
K + + + + + + + + L G + NL
Sbjct: 35 KSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD-------FNLVPD 87
Query: 153 GLAENSLTSLPDSLANLQQLRVLDLRHNKLNE--LPMVVYKLTSLKILYLRFNRIKTVHP 210
G + ++ L + L+ + + L ++ + K+L L
Sbjct: 88 GWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE------ 141
Query: 211 DIQYLSNLSMLSMRDN--KIRELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLD 268
S + ++ ++EL +L+ D++ + L P T LV+L+
Sbjct: 142 ---GFSTDGLAAIAATCRNLKEL-----DLRESDVDDVSGHWLSHFPD---TYTSLVSLN 190
Query: 269 LQ-HNELVN---IPDMLGNLINLTRLRLSYNR-LESVPETLSKCVHLNEFNVEGCALSSL 323
+ V+ + ++ NL L+L+ LE + L + L E G
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250
Query: 324 PDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
PD +++ R ++ + + ++S L+
Sbjct: 251 PDVYSGLSVALSGCKELR------------------CLSGFWDAVPAYLPAVYSVCSRLT 292
Query: 384 KVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNL-LKKLP 442
+N L+ + + + KL + L+ L + + + L
Sbjct: 293 TLN------------------LSYATVQSYDLVKL---LCQCPKLQRLWVLDYIEDAGLE 331
Query: 443 SSIGNLRKLKCLDLEENKLESLPNEIGF-----------LKELQRLILQSNQ-----LVS 486
+ L+ L + ++ + + +L+ ++ Q L++
Sbjct: 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391
Query: 487 LPRAIGHLTNLSYLSVGENNLQSIPEEIG---------TLENLHTLYLNDNTCLNNIPFE 537
+ R ++T + + E ++L L L+ +
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI 451
Query: 538 LALCSNLQIMSLDNCPLS 555
++++S+ S
Sbjct: 452 GTYAKKMEMLSVAFAGDS 469
Score = 39.9 bits (93), Expect = 0.002
Identities = 43/335 (12%), Positives = 97/335 (28%), Gaps = 68/335 (20%)
Query: 288 TRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAY 347
++ + S + + + ++G + + + +
Sbjct: 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA------ 99
Query: 348 PSGGPTQFTSVYSINFEHNQI-DKIPYGIFSRAKNLSKVNMK------DNLLTSLPLDLG 400
+ +T + I + + D I KN + + + L ++
Sbjct: 100 ---MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC- 155
Query: 401 TWVGLTELNLGTNQISKLSEDI-----QNLVNLEVLVLSN-------NLLKKLPSSIGNL 448
L EL+L + + +S +L L +S + L++L + NL
Sbjct: 156 --RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213
Query: 449 RKLK----------------CLDLEENKLESLPNEI--GFLKELQRLILQSNQLVSL--- 487
+ LK LEE E+ L + +L L
Sbjct: 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273
Query: 488 ----PRAIGHLT---------NLSYLSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNI 534
P + + NLSY +V +L + + L L++ D +
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL---LCQCPKLQRLWVLDYIEDAGL 330
Query: 535 PFELALCSNLQIMSLDNCPLSQIPSEIVVGGPSLI 569
+ C +L+ + + + + + L+
Sbjct: 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365
Score = 38.0 bits (88), Expect = 0.008
Identities = 33/230 (14%), Positives = 83/230 (36%), Gaps = 10/230 (4%)
Query: 102 NILNLDLSKSSIT--HLPPSVEKLTHLEELYLYGN-KLASLPSQIGYVTNLTCLGLAE-N 157
+ L+LS +++ L + + L+ L++ + A L +L L +
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE 349
Query: 158 SLTSLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSN 217
P+ Q L + + KL + ++T+ ++ + NR + +
Sbjct: 350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409
Query: 218 LSMLSMRDNKIRELPPELGE-LKNLVTLDLAHNHLEELPKEIG-NCTMLVTLDLQHNEL- 274
+ + + + E K+L L L+ +++ + IG + L +
Sbjct: 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS 469
Query: 275 -VNIPDMLGNLINLTRLRLSYNRL--ESVPETLSKCVHLNEFNVEGCALS 321
+ + +L +L +L + +++ SK + + C++S
Sbjct: 470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 44.5 bits (105), Expect = 6e-05
Identities = 37/256 (14%), Positives = 78/256 (30%), Gaps = 39/256 (15%)
Query: 97 RCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKL--ASLPSQIGYVTNLTCLGL 154
R + ++ +S + ++ + L + + ++L + + L L L
Sbjct: 66 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125
Query: 155 AENSLT-SLPDSLANLQQLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQ 213
L+ + ++LA L L+L + + L +
Sbjct: 126 EGLRLSDPIVNTLAKNSNLVRLNLSG---------CSGFSEFALQTL-----------LS 165
Query: 214 YLSNLSMLSMR------DNKIRELPPELGELKNLVTLDLAHNHL----EELPKEIGNCTM 263
S L L++ + ++ + + + L+L+ +L + C
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHV--SETITQLNLSGYRKNLQKSDLSTLVRRCPN 223
Query: 264 LVTLDLQHNELV--NIPDMLGNLINLTRLRLSYNRL--ESVPETLSKCVHLNEFNVEGCA 319
LV LDL + ++ + L L L LS L + L V G
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 283
Query: 320 LSSLPDGLLSSLTSIN 335
L +L +
Sbjct: 284 PDGTLQLLKEALPHLQ 299
Score = 38.3 bits (89), Expect = 0.006
Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 15/181 (8%)
Query: 389 DNLLTSLPLDLGTWVGLTELNLGTNQISK--LSEDIQNLVNLEVLVLSN-NLLKKLPSSI 445
+ + + + + ++L + I L + L+ L L L + +++
Sbjct: 79 RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138
Query: 446 GNLRKLKCLDLEENKL---ESLPNEIGFLKELQRLILQSNQLVS---LPRAIGHLT-NLS 498
L L+L +L + L L L + + A+ H++ ++
Sbjct: 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198
Query: 499 YLSVGENNL----QSIPEEIGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCP 553
L++ + + NL L L+D+ L N F+ + LQ +SL C
Sbjct: 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258
Query: 554 L 554
Sbjct: 259 D 259
Score = 33.7 bits (77), Expect = 0.15
Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 24/208 (11%)
Query: 381 NLSKVNMKDNLLTSLPLDLGTWVGLTELNL-GTNQISKLSEDIQNLVNLEVLVLS----- 434
+LS ++ + L + L L L+L G + + NL L LS
Sbjct: 99 DLSNSVIEVSTLHGI---LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155
Query: 435 -NNLLKKLPSSIGNLRKLK---CLDLEENKLESLPNEIGFLKELQRLILQS-NQLVS--- 486
L+ L SS L +L C D E ++ + + + +L L + +
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV--SETITQLNLSGYRKNLQKSD 213
Query: 487 LPRAIGHLTNLSYLSVGENNL---QSIPEEIGTLENLHTLYLNDNTCLNNIPFE-LALCS 542
L + NL +L + ++ + +E L L L L+ + L
Sbjct: 214 LSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272
Query: 543 NLQIMSLDNCPLSQIPSEIVVGGPSLII 570
L+ + + + P L I
Sbjct: 273 TLKTLQVFGIVPDGTLQLLKEALPHLQI 300
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 43.9 bits (104), Expect = 8e-05
Identities = 47/274 (17%), Positives = 86/274 (31%), Gaps = 60/274 (21%)
Query: 100 EENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSL 159
+L+ + S E L+ L +L L G ++ T + C +A L
Sbjct: 48 PSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRM----------TPVKCTVVAA-VL 96
Query: 160 TSLPDSLANLQQLRVLDLRHNKLNE------LPMVVYKLTSLKILYLRFNRIKTVHPDIQ 213
S L ++L +L+ LP+ + L L+ N + +
Sbjct: 97 GS------GRHALDEVNLASCQLDPAGLRTLLPV----FLRARKLGLQLNSLG--PEACK 144
Query: 214 YL--------SNLSMLSMRDNKIRE-----LPPELGELKNLVTLDLAHNHL-----EELP 255
L ++ L + +N + L L ++ L L H L E L
Sbjct: 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204
Query: 256 KEIGNCTMLVTLDLQHNEL-----VNIPDMLGNLINLTRLRLSYNR--------LESVPE 302
++ L L++ +N + + +L L L +N L +
Sbjct: 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGG 264
Query: 303 TLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINN 336
+ EG A+S +LS + N
Sbjct: 265 AAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLN 298
Score = 42.4 bits (100), Expect = 3e-04
Identities = 46/313 (14%), Positives = 95/313 (30%), Gaps = 77/313 (24%)
Query: 147 TNLTCLGLAENSLTS-----LPDSL-ANLQQLRVLDLRHNKLNE------LPMVVYKLTS 194
++L L LA +T + L + L ++L +L+ LP+
Sbjct: 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV----FLR 127
Query: 195 LKILYLRFNRIKTVHPDIQYL--------SNLSMLSMRDNKIRE-----LPPELGELKNL 241
+ L L+ N + + L ++ L + +N + L L ++
Sbjct: 128 ARKLGLQLNSLG--PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185
Query: 242 VTLDLAHNHL-----EELPKEIGNCTMLVTLDLQHNEL-----VNIPDMLGNLINLTRLR 291
L L H L E L ++ L L++ +N + + +L L
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245
Query: 292 LSYNR--------LESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNK 343
L +N L + + EG A+S +LS + N + R +
Sbjct: 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQR-NLNSWDRAR 304
Query: 344 FTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWV 403
+ + + E ++ + + +A+ L +V +
Sbjct: 305 VQ--------RHLELLLRDLEDSRGATL--NPWRKAQLL-RVEGE--------------- 338
Query: 404 GLTELNLGTNQIS 416
+ L
Sbjct: 339 -VRALLEQLGSSG 350
Score = 40.1 bits (94), Expect = 0.002
Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 40/236 (16%)
Query: 94 EFLRCKEENILNLDLSKSSITH--LPPSVEKLTHLEELYLYGNKL---------ASLPSQ 142
L + ++L+ + L + +L L N L L
Sbjct: 94 AVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153
Query: 143 IGYVTNLTCLGLAENSLTS-----LPDSLANLQQLRVLDLRHNKLNE-----LPMVVYKL 192
+T L L+ N LT+ L + LA + L L H L + L + +
Sbjct: 154 ---QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210
Query: 193 TSLKILYLRFNRIK-----------TVHPDIQYLSNLSMLSMRDNKIRELPPELGELKNL 241
L+ L + +N HP ++ L +L + + L G +
Sbjct: 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELL-HLYFNELSSEGRQVLRDLGGAAEGG 269
Query: 242 VTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRL 297
+ ++ + + +++++ ++ + + +L L L +R
Sbjct: 270 ARVVVSLTEGTAVSEY---WSVILSEVQRNLNSWDRARVQRHL-ELLLRDLEDSRG 321
Score = 40.1 bits (94), Expect = 0.002
Identities = 52/328 (15%), Positives = 98/328 (29%), Gaps = 90/328 (27%)
Query: 229 RELPPELGELKNLVTLDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLT 288
+L + L L L +L +++ + L+ H E N L +L
Sbjct: 16 AQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLR 75
Query: 289 RLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYP 348
+L L+ R+ C + + L S +++ + L+ + P
Sbjct: 76 QLNLAGVRMTP----------------VKC--TVVAAVLGSGRHALDEVNLASCQLD--P 115
Query: 349 SGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTEL 408
+G + L V ++ +L
Sbjct: 116 AG----------------------------LRTLLPVFLR----------------ARKL 131
Query: 409 NLGTNQIS-----KLSEDIQ-NLVNLEVLVLSNNLL-----KKLPSSIGNLRKLKCLDLE 457
L N + L + + + + L LSNN L L + + L L
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191
Query: 458 ENKL-----ESLPNEIGFLKELQRLILQSNQL-----VSLPRAIGHLTNLSYLSVGENNL 507
L E L ++ ++LQ L + N ++L RA +L L + N L
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251
Query: 508 -----QSIPEEIGTLENLHTLYLNDNTC 530
Q + + G E + ++
Sbjct: 252 SSEGRQVLRDLGGAAEGGARVVVSLTEG 279
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 43.0 bits (100), Expect = 2e-04
Identities = 36/272 (13%), Positives = 80/272 (29%), Gaps = 26/272 (9%)
Query: 4 NKPKARSSSESRIAAERLASYREESSTALLNSDSSRSDEYGYFEDMPEKDNKKCGVDVKK 63
K A + + + + + ++E D KD K +
Sbjct: 54 GKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQIT 113
Query: 64 TVTVKHPESNKPKPTTKKKEPIQADLNIEKEFLRCKEENILNLDLSKSSITHLPPSVEKL 123
+ + E + + E F + ++S L P ++ +
Sbjct: 114 IGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFE--EQEISWIEQVDLSPVLDAM 171
Query: 124 THLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTS---LPDSLANLQQLRVLDLRHN 180
L L + G S+ + NL L + L ++L L L L
Sbjct: 172 PLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG 229
Query: 181 KLNELP----------MVVYKLTSLKILYLRFNRIKT----VHPDIQYLSNLSMLSMRDN 226
+ + +LK L + + + + L L + +
Sbjct: 230 VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289
Query: 227 KI-----RELPPELGELKNLVTLDLAHNHLEE 253
+ R L + ++K+L +++ +N+L +
Sbjct: 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
Score = 36.9 bits (84), Expect = 0.015
Identities = 27/188 (14%), Positives = 56/188 (29%), Gaps = 28/188 (14%)
Query: 285 INLTRLRLSYNRLESVPETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKF 344
I+ +S+ + L LN ++G S+ +L S+ I+
Sbjct: 149 IDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIIS------ 202
Query: 345 TAYPSGGPTQFTSVYSINFEHNQID--KIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTW 402
P N E + YG + +
Sbjct: 203 GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-----------FSKDRF 251
Query: 403 VGLTELNLGTNQIS----KLSEDIQNLVNLEVLVLSNNLL-----KKLPSSIGNLRKLKC 453
L L + + ++ + L LE + +S +L + L + ++ LK
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311
Query: 454 LDLEENKL 461
++++ N L
Sbjct: 312 INMKYNYL 319
Score = 34.5 bits (78), Expect = 0.090
Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 28/161 (17%)
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNN-----LLKKLPSSIG 446
L L L L + LS + NL+ L + + +++ + S
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNN--LSIGKKPRPNLKSLEIISGGLPDSVVEDILGS-- 216
Query: 447 NLRKLKCLDLEENKLESLPN----------EIGFLKELQRLILQSNQLVS-LPRAIGH-- 493
+L L+ L L + + L+ L + + + +
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276
Query: 494 -LTNLSYLSVGENNL-----QSIPEEIGTLENLHTLYLNDN 528
L L + + L + + + + +++L + + N
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317
Score = 33.4 bits (75), Expect = 0.18
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 33/140 (23%)
Query: 392 LTSLPLDLGTWVGLTELNLGTNQISKLSE--DIQNLVNLEVLVLSNN-----LLKKLPSS 444
L L L +G E ++ NL+ L + + +++ S
Sbjct: 221 LEKLVLYVGV-----EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275
Query: 445 IGNLRKLKCLDLEENKL-----ESLPNEIGFLKELQRLILQSNQL-----VSLPRAIGHL 494
L +L+ +D+ L L + + +K L+ + ++ N L L +++
Sbjct: 276 D-ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK 334
Query: 495 TNLS----------YLSVGE 504
++S Y + E
Sbjct: 335 IDVSDSQEYDDDYSYPMITE 354
Score = 29.2 bits (64), Expect = 3.6
Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 24/174 (13%)
Query: 358 VYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDNLLTSLPLDLGTWV--GLTELNLGTNQI 415
I+FE +I I S + + + + L +G L L + + +
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205
Query: 416 SK------LSEDIQNLVNLEVLVLSNNL-----LKKLPS--SIGNLRKLKCLDLEENKLE 462
L D+ NL L + V + + S LK L + + + +
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265
Query: 463 SLP----NEIGFLKELQRLILQSNQL-----VSLPRAIGHLTNLSYLSVGENNL 507
++ E L +L+ + + + L L + + +L ++++ N L
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 41.5 bits (97), Expect = 4e-04
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 10/164 (6%)
Query: 329 SSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKV-NM 387
S+L ++N L R + + Q++++ + R + ++
Sbjct: 75 SALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDL 134
Query: 388 KDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDIQNLVNLEVLVLSNNLLKKL---PSS 444
K + V L + + + E N+ L L LSNN L +L S
Sbjct: 135 KGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE---NIPELLSLNLSNNRLYRLDDMSSI 191
Query: 445 IGNLRKLKCLDLEENKLESLPNEIGFLK--ELQRLILQSNQLVS 486
+ LK L+L N+L+S E+ +K +L+ L L N L
Sbjct: 192 VQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCD 234
Score = 38.8 bits (90), Expect = 0.003
Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 15/152 (9%)
Query: 107 DLSKSSITHLPPSVEKLTHLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSL 166
+L + L + K + L L S P + L +L
Sbjct: 108 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA-QNIDVVLNRRSCMAATLRIIE 166
Query: 167 ANLQQLRVLDLRHNK---LNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSM--L 221
N+ +L L+L +N+ L+++ +V K +LKIL L N +K+ ++ + L + L
Sbjct: 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEEL 225
Query: 222 SMRDNKIRELPPELGE--------LKNLVTLD 245
+ N + + + L+ LD
Sbjct: 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
Score = 32.7 bits (74), Expect = 0.30
Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 14/122 (11%)
Query: 90 NIEKEFLRCKEENILNLDLSKSSITHLPPSVEKLTHLEELYLYGNKLASL---PSQIGYV 146
+ + + + L+ L E + L L L N+L L S +
Sbjct: 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 195
Query: 147 TNLTCLGLAENSLTSLPDSLANLQQ--LRVLDLRHNKLNELPM--------VVYKLTSLK 196
NL L L+ N L S L ++ L L L N L + + + L
Sbjct: 196 PNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLL 254
Query: 197 IL 198
L
Sbjct: 255 RL 256
Score = 32.3 bits (73), Expect = 0.38
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 171 QLRVLDLRHNKLNELPMVVYKLTSLKILYLRFNRIKTVHPDIQYLSNLSMLSMRDNKIRE 230
+ LDL+ + + + L ++ + + + L L++ +N++
Sbjct: 128 SQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE---ENIPELLSLNLSNNRLYR 184
Query: 231 LPP---ELGELKNLVTLDLAHNHLEELPK-EIGNCTMLVTLDLQHNELVN 276
L + + NL L+L+ N L+ + + L L L N L +
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234
Score = 29.6 bits (66), Expect = 3.0
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 10/115 (8%)
Query: 244 LDLAHNHLEELPKEIGNCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLES---V 300
LDL + + V L+ + + + N+ L L LS NRL +
Sbjct: 132 LDLKGLRSDPDLVAQN---IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDM 188
Query: 301 PETLSKCVHLNEFNVEGCALSSLPDGLLSSLTSIN--NITLSRNKFTAYPSGGPT 353
+ K +L N+ G L S + L + + + L N T
Sbjct: 189 SSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGNSLCDTFRDQST 241
Score = 29.6 bits (66), Expect = 3.0
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 452 KCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIGHLTNLSYLSVGENNLQSI- 510
+ LDL+ + + L R S +L ++ L L++ N L +
Sbjct: 130 QALDLKGLRSDPDLVAQNIDVVLNRR---SCMAATLRIIEENIPELLSLNLSNNRLYRLD 186
Query: 511 --PEEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQI--MSLDNCPLSQIPSE 560
+ NL L L+ N L + EL L++ + LD L +
Sbjct: 187 DMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRD 238
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 35.9 bits (83), Expect = 0.008
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 16/77 (20%)
Query: 105 NLDLSKSSITHLPPSV-EKLTHLEELYLYGN------KLASLP------SQIGYVTNLTC 151
L L+ +++T LPP + + L L +L N +L L + +L C
Sbjct: 35 ELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRC 94
Query: 152 LG---LAENSLTSLPDS 165
+ L L L +
Sbjct: 95 VAPPALRGRLLPYLAED 111
Score = 35.2 bits (81), Expect = 0.013
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 388 KDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLVLSNN 436
+ SLP TEL L N ++ L + L L L N
Sbjct: 18 RGLTWASLPTAFPV--DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 34.4 bits (79), Expect = 0.029
Identities = 15/60 (25%), Positives = 16/60 (26%), Gaps = 22/60 (36%)
Query: 124 THLEELYLYGNKLASLPSQIGYVTNLTCLGLAENSLTSLPDSLANLQQLRVLDLRHNKLN 183
EL L GN L +LP P L L LR L N
Sbjct: 31 VDTTELVLTGNNLTALP----------------------PGLLDALPALRTAHLGANPWR 68
Score = 33.6 bits (77), Expect = 0.057
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 463 SLPNEIGFLKELQRLILQSNQLVSLPRAI-GHLTNLSYLSVGENNLQ 508
SLP F + L+L N L +LP + L L +G N +
Sbjct: 24 SLPT--AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 33.2 bits (76), Expect = 0.070
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 480 QSNQLVSLPRAIGHLTNLSYLSVGENNLQSIPEEI-GTLENLHTLYLNDN 528
+ SLP A + + L + NNL ++P + L L T +L N
Sbjct: 18 RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 31.7 bits (72), Expect = 0.20
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 426 VNLEVLVLSNNLLKKLPSSI-GNLRKLKCLDLEEN 459
V+ LVL+ N L LP + L L+ L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 31.3 bits (71), Expect = 0.33
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 216 SNLSMLSMRDNKIRELPPE-LGELKNLVTLDLAHNHL 251
+ + L + N + LPP L L L T L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 29.4 bits (66), Expect = 1.6
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 348 PSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLSKVNMKDN 390
P+ P + N + +P G+ L ++ N
Sbjct: 26 PTAFPV---DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 28.2 bits (63), Expect = 3.5
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 262 TMLVTLDLQHNELVNIP-DMLGNLINLTRLRLSYN 295
L L N L +P +L L L L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 32.9 bits (75), Expect = 0.14
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 102 NILNLDLSKSSITHL-PPSVEKLTHLEELYLYGNK------LASLPSQIGYVTNLTCLGL 154
I +D + S I + +E L ++E++ L L L ++ + +
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 155 AENSLTSLPD----SLANLQQLRVLDLRH-NKLNELPMVVYKL-TSLKILYLRFN 203
+ D +L + + L+ L L + E +V TSL L L+ +
Sbjct: 122 ISCGNVT--DKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKLD 174
Score = 32.1 bits (73), Expect = 0.26
Identities = 15/115 (13%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 441 LPSSIGNLRKLKCLDLEENKLESLPNEIGF-LKELQRLILQSNQLVSLPRAIGHLTNLSY 499
LP+ + K++ +D ++ + S+ + L+ ++++ L + + L+ L
Sbjct: 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLEN 111
Query: 500 LSVGENNLQSIPEEIGTLENLHTLYLNDNTCLNNIPFE-LALCSNLQIMSLDNCP 553
L +++ + + + + L NL+ + L + P
Sbjct: 112 LQ----------------KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 33.6 bits (77), Expect = 0.16
Identities = 25/204 (12%), Positives = 64/204 (31%), Gaps = 27/204 (13%)
Query: 328 LSSLTSIN----NITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPYGIFSRAKNLS 383
SL ++ I + K YP+G + + + + G+ + L
Sbjct: 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA---YAFSNVVNGVTKGKQTLE 104
Query: 384 KVNMKDNLLTSLPLDLGTWV-----GLTELNLGTN-QISKLSEDIQNLVNLEVLVLSNNL 437
KV + + + + L + + L E + + V + L ++
Sbjct: 105 KVILSEKIKN-----IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD 159
Query: 438 LKKLPSSIGNLRKLKCLDLEENKLESLPNEIGFLKELQRLILQSNQLVSLPRAIG----- 492
+ + + ++ LE ++ L + +++ +
Sbjct: 160 AYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFK 219
Query: 493 ----HLTNLSYLSVGENNLQSIPE 512
++ NL L + + N +IP+
Sbjct: 220 LIRDYMPNLVSLDISKTNATTIPD 243
Score = 32.1 bits (73), Expect = 0.44
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 15/150 (10%)
Query: 256 KEIG-----NCTMLVTLDLQHNELVNI-PDMLGNLINLTRLRLSYNRLESVPETL----- 304
K I C L ++ N+ P+ L + + + L +
Sbjct: 113 KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172
Query: 305 SKCVHLNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQF---TSVYSI 361
+ L G A+ L D ++ + +I + + ++ S+
Sbjct: 173 IEGEPLETTIQVG-AMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL 231
Query: 362 NFEHNQIDKIPYGIFSRAKNLSKVNMKDNL 391
+ IP F++ K L K+ + NL
Sbjct: 232 DISKTNATTIPDFTFAQKKYLLKIKLPHNL 261
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 32.3 bits (73), Expect = 0.55
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 551 NCPLSQIPSEIVVGGPSLIIRYLKMQ 576
+ PL P EIV G + +Y +
Sbjct: 1 DNPLESPPPEIVKQGKEAVRQYFQSI 26
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 30.1 bits (68), Expect = 2.3
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 28/135 (20%)
Query: 316 EGCALSS--LPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQIDKIPY 373
++ L L SI ++ + I F + ++++
Sbjct: 133 RNSQIAKVVLN----EGLKSIGDMAFFNSTVQ--------------EIVF-PSTLEQLKE 173
Query: 374 GIFSRAKNLSKVNMKDNLLTSLPLDLGTWVGLTELNLGTNQISKLSEDI-QNLVNLEVLV 432
IF NL K ++ +T LP + G+ E+ L + ++ L+ +
Sbjct: 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232
Query: 433 LSNNLLKKLPSSIGN 447
+ N+ S+IG
Sbjct: 233 IPENV-----STIGQ 242
Score = 28.1 bits (63), Expect = 8.7
Identities = 18/148 (12%), Positives = 41/148 (27%), Gaps = 34/148 (22%)
Query: 256 KEIG-----NCTMLVTLDLQHNELVNIPDMLGNLINLTRLRLSYNRLESVPE-TLSKCVH 309
+++ C L DL ++ +P + + L L+ + K
Sbjct: 169 EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQ 227
Query: 310 LNEFNVEGCALSSLPDGLLSSLTSINNITLSRNKFTAYPSGGPTQFTSVYSINFEHNQID 369
L +P+ ++++I + T ++ N +
Sbjct: 228 LKTIE--------IPE----NVSTIGQEAFRESGIT--------------TVKL-PNGVT 260
Query: 370 KIPYGIFSRAKNLSKVNMKDNLLTSLPL 397
I F L++V + P
Sbjct: 261 NIASRAFYYCPELAEVTTYGSTFNDDPE 288
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 29.2 bits (66), Expect = 2.8
Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 124 THLEELYLYGNKLASLPSQ-IGYV----TNLTCLGLAENSLT-----SLPDSLANLQQLR 173
T++++ + G + + + + L L + N ++ +L ++L + L
Sbjct: 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLI 124
Query: 174 VLDLRHNKLN-------ELPMVVYKLTSLKILYLRFNRI 205
L + + E+ ++ K T+L F +
Sbjct: 125 ELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 4.2
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 8/35 (22%)
Query: 512 EEIGTLENLHTLYLNDNTCLNNIPFELALCSNLQI 546
+ + L+ LY +D+ P AL +
Sbjct: 20 QALKKLQASLKLYADDSA-----P---ALAIKATM 46
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 28.1 bits (63), Expect = 7.9
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 446 GNLRKLKCLDLEENKLESLPNEIGFLKELQ 475
+K + E KL ++ +E+ L L
Sbjct: 31 SRYYAIKKIRHTEEKLSTILSEVMLLASLN 60
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 26.8 bits (60), Expect = 9.9
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 445 IGNLRK------LKCLDLEENKLESLPNEIGFLKEL 474
+ + R+ L LDLE K+ESL EI FLK+L
Sbjct: 71 LQSFRQDVDNASLARLDLE-RKVESLQEEIAFLKKL 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.371
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,250,300
Number of extensions: 485220
Number of successful extensions: 10611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1110
Number of HSP's successfully gapped: 588
Length of query: 582
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 483
Effective length of database: 3,937,614
Effective search space: 1901867562
Effective search space used: 1901867562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.7 bits)