Query psy10958
Match_columns 321
No_of_seqs 351 out of 1551
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:48:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12346 transaldolase A; Prov 100.0 1.8E-67 4E-72 503.0 25.7 227 1-281 73-316 (316)
2 TIGR00874 talAB transaldolase. 100.0 6.3E-67 1.4E-71 499.9 25.3 229 1-281 72-317 (317)
3 PTZ00411 transaldolase-like pr 100.0 8.6E-67 1.9E-71 501.8 26.3 231 1-283 84-332 (333)
4 cd00957 Transaldolase_TalAB Tr 100.0 2.9E-65 6.3E-70 488.2 24.1 225 1-277 72-313 (313)
5 PRK12309 transaldolase/EF-hand 100.0 1.2E-64 2.7E-69 497.1 27.5 231 1-283 78-325 (391)
6 KOG2772|consensus 100.0 3E-65 6.4E-70 475.0 17.0 232 1-284 86-335 (337)
7 PRK05269 transaldolase B; Prov 100.0 4.8E-64 1E-68 481.3 25.2 228 1-282 74-318 (318)
8 PF00923 Transaldolase: Transa 100.0 2.6E-48 5.6E-53 368.5 12.1 211 1-227 58-286 (287)
9 PRK03343 transaldolase; Valida 100.0 3.6E-47 7.9E-52 369.6 16.6 214 2-232 90-363 (368)
10 COG0176 MipB Transaldolase [Ca 100.0 2.3E-46 5E-51 344.1 17.8 178 3-220 47-231 (239)
11 cd00955 Transaldolase_like Tra 100.0 2.7E-45 5.8E-50 353.4 16.1 205 2-220 77-337 (338)
12 cd00439 Transaldolase Transald 100.0 1.8E-43 3.9E-48 330.0 18.3 156 2-163 67-241 (252)
13 PRK03903 transaldolase; Provis 100.0 1.7E-43 3.7E-48 332.1 17.1 198 15-227 40-273 (274)
14 TIGR00875 fsa_talC_mipB fructo 100.0 3E-41 6.4E-46 307.9 18.1 153 5-168 39-197 (213)
15 PRK01362 putative translaldola 100.0 8.4E-41 1.8E-45 305.0 18.4 153 5-168 39-197 (214)
16 PRK12656 fructose-6-phosphate 100.0 6.1E-40 1.3E-44 300.6 18.4 154 5-168 40-201 (222)
17 PRK12655 fructose-6-phosphate 100.0 8.3E-40 1.8E-44 299.6 17.8 151 7-168 41-199 (220)
18 PRK12653 fructose-6-phosphate 100.0 2.8E-39 6.1E-44 296.1 18.1 150 7-167 41-198 (220)
19 TIGR00876 tal_mycobact transal 100.0 1.1E-39 2.5E-44 314.4 14.8 209 2-226 80-349 (350)
20 PRK09533 bifunctional transald 100.0 1.9E-37 4.1E-42 330.1 16.7 206 11-231 97-370 (948)
21 PRK12376 putative translaldola 100.0 7.2E-37 1.6E-41 282.5 18.2 149 5-165 45-208 (236)
22 cd00956 Transaldolase_FSA Tran 100.0 3.6E-36 7.7E-41 274.2 18.3 152 5-167 39-196 (211)
23 TIGR02134 transald_staph trans 100.0 5.1E-36 1.1E-40 276.6 17.5 149 5-165 45-208 (236)
24 KOG2772|consensus 99.1 1.4E-10 2.9E-15 109.6 5.8 54 268-321 59-112 (337)
25 PRK12346 transaldolase A; Prov 98.4 6.1E-07 1.3E-11 86.8 6.3 48 274-321 52-99 (316)
26 PTZ00411 transaldolase-like pr 98.3 1.8E-06 3.9E-11 84.2 8.4 36 286-321 75-110 (333)
27 TIGR00874 talAB transaldolase. 98.3 1.5E-06 3.2E-11 84.3 6.2 48 274-321 51-98 (317)
28 cd00957 Transaldolase_TalAB Tr 98.2 1.9E-06 4.1E-11 83.4 6.3 50 272-321 49-98 (313)
29 PRK05269 transaldolase B; Prov 98.2 2.4E-06 5.2E-11 82.9 5.7 38 284-321 63-100 (318)
30 PRK12309 transaldolase/EF-hand 98.0 8.2E-06 1.8E-10 81.2 6.3 38 284-321 67-104 (391)
31 PRK03343 transaldolase; Valida 97.4 0.00021 4.5E-09 70.7 5.7 113 160-283 251-365 (368)
32 TIGR00876 tal_mycobact transal 96.3 0.0059 1.3E-07 60.0 5.5 30 290-321 74-103 (350)
33 cd02809 alpha_hydroxyacid_oxid 96.2 0.38 8.3E-06 46.1 16.9 146 12-165 110-265 (299)
34 cd00955 Transaldolase_like Tra 96.1 0.0098 2.1E-07 58.4 5.6 31 289-321 70-100 (338)
35 cd00439 Transaldolase Transald 95.8 0.014 3E-07 55.1 5.1 47 275-321 46-94 (252)
36 TIGR01182 eda Entner-Doudoroff 95.7 0.17 3.7E-06 46.4 11.7 111 29-148 16-143 (204)
37 PRK06015 keto-hydroxyglutarate 95.7 0.15 3.3E-06 46.6 11.3 131 29-168 12-166 (201)
38 PRK07114 keto-hydroxyglutarate 95.5 0.2 4.3E-06 46.5 11.3 112 29-149 23-154 (222)
39 COG5016 Pyruvate/oxaloacetate 95.1 0.3 6.5E-06 49.1 11.9 89 10-106 135-235 (472)
40 PF00923 Transaldolase: Transa 95.0 0.031 6.8E-07 53.4 4.7 33 289-321 52-86 (287)
41 PF01081 Aldolase: KDPG and KH 94.9 0.17 3.8E-06 46.0 9.1 131 29-168 16-170 (196)
42 PRK06552 keto-hydroxyglutarate 94.5 0.59 1.3E-05 43.0 11.7 71 29-106 21-96 (213)
43 PRK05718 keto-hydroxyglutarate 94.4 0.65 1.4E-05 42.7 11.5 70 29-106 23-95 (212)
44 COG0176 MipB Transaldolase [Ca 93.9 0.04 8.6E-07 51.7 2.6 36 285-321 34-70 (239)
45 COG0800 Eda 2-keto-3-deoxy-6-p 93.8 0.89 1.9E-05 42.0 11.2 130 29-167 21-174 (211)
46 CHL00162 thiG thiamin biosynth 93.6 3.2 6.9E-05 39.5 14.5 145 12-159 62-221 (267)
47 PRK00208 thiG thiazole synthas 93.3 4.2 9.2E-05 38.5 14.9 140 11-160 53-208 (250)
48 TIGR03128 RuMP_HxlA 3-hexulose 93.1 1.8 3.8E-05 38.7 11.9 99 56-157 26-134 (206)
49 PLN02535 glycolate oxidase 93.0 1.3 2.7E-05 44.2 11.5 102 61-165 209-316 (364)
50 cd04728 ThiG Thiazole synthase 92.8 5.5 0.00012 37.7 14.9 139 12-160 54-208 (248)
51 PF03437 BtpA: BtpA family; I 92.4 3.4 7.5E-05 39.1 13.2 138 18-155 7-178 (254)
52 PRK09140 2-dehydro-3-deoxy-6-p 92.0 3.5 7.7E-05 37.6 12.5 118 29-165 18-146 (206)
53 PF01070 FMN_dh: FMN-dependent 92.0 1.9 4.2E-05 42.6 11.5 101 62-165 212-318 (356)
54 PF05690 ThiG: Thiazole biosyn 90.7 9.5 0.00021 36.0 13.8 140 11-159 53-207 (247)
55 PTZ00314 inosine-5'-monophosph 90.7 7.6 0.00016 40.2 14.6 116 35-158 242-375 (495)
56 PRK07107 inosine 5-monophospha 90.1 5.8 0.00013 41.1 13.2 118 32-158 240-383 (502)
57 cd04737 LOX_like_FMN L-Lactate 89.7 5.7 0.00012 39.3 12.3 101 62-165 208-314 (351)
58 cd03332 LMO_FMN L-Lactate 2-mo 89.2 5.8 0.00013 39.8 12.0 101 62-165 240-346 (383)
59 PRK06806 fructose-bisphosphate 88.6 13 0.00028 35.6 13.6 138 8-163 89-237 (281)
60 PRK11858 aksA trans-homoaconit 88.5 11 0.00024 37.5 13.5 123 26-156 19-165 (378)
61 cd02922 FCB2_FMN Flavocytochro 88.5 6.5 0.00014 38.8 11.7 97 69-165 204-309 (344)
62 TIGR01302 IMP_dehydrog inosine 88.4 11 0.00024 38.3 13.8 118 33-158 223-358 (450)
63 PRK11197 lldD L-lactate dehydr 88.3 6.5 0.00014 39.4 11.7 102 62-166 232-339 (381)
64 cd00452 KDPG_aldolase KDPG and 88.1 12 0.00026 33.2 12.4 108 29-155 12-123 (190)
65 cd04726 KGPDC_HPS 3-Keto-L-gul 86.7 11 0.00024 33.3 11.2 112 31-155 11-132 (202)
66 cd07939 DRE_TIM_NifV Streptomy 86.4 19 0.00042 33.6 13.1 123 27-156 14-159 (259)
67 PLN02979 glycolate oxidase 86.0 13 0.00028 37.2 12.2 102 62-166 210-317 (366)
68 PRK05848 nicotinate-nucleotide 85.8 9.2 0.0002 36.6 10.7 87 68-158 170-259 (273)
69 TIGR02660 nifV_homocitr homoci 85.7 18 0.00039 35.7 13.2 123 27-156 17-162 (365)
70 cd00452 KDPG_aldolase KDPG and 85.4 17 0.00037 32.2 11.8 97 60-165 82-180 (190)
71 cd04741 DHOD_1A_like Dihydroor 84.6 14 0.0003 35.4 11.5 121 4-126 144-292 (294)
72 PRK12331 oxaloacetate decarbox 84.1 13 0.00028 38.1 11.6 105 18-132 141-257 (448)
73 PRK05692 hydroxymethylglutaryl 83.9 21 0.00045 34.2 12.3 123 27-156 20-175 (287)
74 TIGR02151 IPP_isom_2 isopenten 83.9 15 0.00033 35.8 11.6 96 68-164 169-291 (333)
75 TIGR02708 L_lactate_ox L-lacta 83.9 16 0.00036 36.4 11.9 99 62-166 215-322 (367)
76 cd04740 DHOD_1B_like Dihydroor 83.7 35 0.00076 32.2 13.8 118 3-130 140-287 (296)
77 cd02811 IDI-2_FMN Isopentenyl- 83.5 36 0.00078 33.1 14.0 97 68-165 168-293 (326)
78 PRK05567 inosine 5'-monophosph 83.4 25 0.00053 36.2 13.4 117 34-158 228-362 (486)
79 TIGR01037 pyrD_sub1_fam dihydr 83.3 26 0.00056 33.3 12.7 117 4-130 144-290 (300)
80 PRK13398 3-deoxy-7-phosphohept 83.0 10 0.00022 36.1 9.6 76 18-102 26-113 (266)
81 PLN02746 hydroxymethylglutaryl 82.8 26 0.00055 34.8 12.7 124 26-156 61-217 (347)
82 PRK01130 N-acetylmannosamine-6 82.6 16 0.00035 33.1 10.6 124 19-155 8-145 (221)
83 cd07945 DRE_TIM_CMS Leptospira 82.5 34 0.00073 32.6 13.1 127 25-156 11-167 (280)
84 PLN02493 probable peroxisomal 82.2 23 0.00049 35.4 12.2 102 61-165 210-317 (367)
85 PRK09533 bifunctional transald 81.8 2.4 5.2E-05 47.1 5.6 30 290-321 84-113 (948)
86 cd07948 DRE_TIM_HCS Saccharomy 81.8 40 0.00087 31.8 13.2 123 27-156 16-161 (262)
87 cd03321 mandelate_racemase Man 81.6 23 0.0005 34.6 11.9 116 6-131 173-291 (355)
88 cd03315 MLE_like Muconate lact 81.6 37 0.00079 31.6 12.8 120 6-134 116-237 (265)
89 PRK12330 oxaloacetate decarbox 81.5 15 0.00033 38.1 11.0 107 16-132 140-260 (499)
90 cd03174 DRE_TIM_metallolyase D 81.2 36 0.00078 31.1 12.5 123 28-157 14-167 (265)
91 PRK00366 ispG 4-hydroxy-3-meth 80.4 36 0.00078 33.9 12.6 107 19-133 27-135 (360)
92 PRK12755 phospho-2-dehydro-3-d 80.2 11 0.00025 37.3 9.1 90 8-98 43-157 (353)
93 TIGR00612 ispG_gcpE 1-hydroxy- 79.9 32 0.0007 34.0 12.0 105 19-133 19-126 (346)
94 TIGR00977 LeuA_rel 2-isopropyl 79.7 18 0.00038 37.8 10.9 124 26-156 16-174 (526)
95 TIGR00259 thylakoid_BtpA membr 79.2 59 0.0013 30.9 14.2 146 18-165 6-196 (257)
96 PF01645 Glu_synthase: Conserv 79.2 20 0.00043 35.8 10.6 126 10-163 164-310 (368)
97 PRK11840 bifunctional sulfur c 79.0 70 0.0015 31.6 14.1 139 12-159 128-281 (326)
98 TIGR01859 fruc_bis_ald_ fructo 78.9 62 0.0013 31.0 16.1 132 18-165 97-239 (282)
99 PRK12457 2-dehydro-3-deoxyphos 77.5 27 0.00059 33.6 10.5 81 19-104 16-111 (281)
100 cd04729 NanE N-acetylmannosami 77.5 24 0.00051 31.9 9.9 123 19-155 12-149 (219)
101 PRK09389 (R)-citramalate synth 77.4 42 0.00091 34.7 12.7 124 26-156 17-163 (488)
102 PRK05437 isopentenyl pyrophosp 76.5 46 0.001 32.8 12.3 97 68-165 176-299 (352)
103 PRK09261 phospho-2-dehydro-3-d 75.4 20 0.00043 35.7 9.2 91 7-98 41-156 (349)
104 cd00381 IMPDH IMPDH: The catal 75.3 84 0.0018 30.6 14.3 117 35-160 95-230 (325)
105 TIGR02090 LEU1_arch isopropylm 74.9 71 0.0015 31.5 13.2 123 26-155 15-160 (363)
106 PRK14040 oxaloacetate decarbox 74.9 24 0.00052 37.4 10.4 79 17-103 141-227 (593)
107 PRK07259 dihydroorotate dehydr 74.7 66 0.0014 30.5 12.6 118 3-130 143-290 (301)
108 PLN02274 inosine-5'-monophosph 74.7 65 0.0014 33.5 13.3 119 34-160 248-384 (505)
109 PRK07428 nicotinate-nucleotide 74.6 16 0.00034 35.3 8.2 70 85-158 202-273 (288)
110 cd07937 DRE_TIM_PC_TC_5S Pyruv 74.4 67 0.0015 30.4 12.5 120 28-156 16-169 (275)
111 PF03740 PdxJ: Pyridoxal phosp 74.2 19 0.0004 34.0 8.3 134 11-162 57-220 (239)
112 PRK14041 oxaloacetate decarbox 73.7 29 0.00062 35.8 10.3 82 17-106 139-232 (467)
113 PF01729 QRPTase_C: Quinolinat 73.3 12 0.00025 33.3 6.5 98 54-157 51-156 (169)
114 cd02810 DHOD_DHPD_FMN Dihydroo 72.7 40 0.00087 31.6 10.5 95 4-106 149-272 (289)
115 PRK06552 keto-hydroxyglutarate 72.6 52 0.0011 30.2 10.9 78 77-160 108-187 (213)
116 PRK08446 coproporphyrinogen II 71.8 44 0.00096 32.7 10.8 114 5-130 70-222 (350)
117 PF04131 NanE: Putative N-acet 71.6 35 0.00076 31.1 9.2 108 35-158 53-175 (192)
118 PRK12822 phospho-2-dehydro-3-d 71.2 20 0.00042 35.7 8.1 79 8-90 42-148 (356)
119 cd00003 PNPsynthase Pyridoxine 70.7 17 0.00038 34.1 7.2 80 11-106 56-151 (234)
120 PRK12581 oxaloacetate decarbox 70.5 35 0.00075 35.3 10.0 107 17-133 149-267 (468)
121 PRK14042 pyruvate carboxylase 70.2 27 0.00058 37.2 9.4 80 16-103 139-226 (596)
122 TIGR01108 oadA oxaloacetate de 70.2 35 0.00076 36.1 10.2 78 18-103 136-221 (582)
123 PRK00915 2-isopropylmalate syn 69.7 91 0.002 32.4 13.1 123 27-156 20-169 (513)
124 cd04736 MDH_FMN Mandelate dehy 69.6 79 0.0017 31.5 12.1 94 69-166 227-328 (361)
125 PRK05660 HemN family oxidoredu 69.6 1E+02 0.0022 30.5 12.9 90 5-106 77-194 (378)
126 cd07943 DRE_TIM_HOA 4-hydroxy- 69.3 99 0.0021 28.8 13.4 123 26-156 15-161 (263)
127 TIGR03128 RuMP_HxlA 3-hexulose 69.0 63 0.0014 28.6 10.4 100 54-160 77-190 (206)
128 cd02803 OYE_like_FMN_family Ol 68.7 44 0.00096 31.9 10.0 102 3-106 192-311 (327)
129 PRK13307 bifunctional formalde 68.7 85 0.0018 31.7 12.2 111 37-156 185-306 (391)
130 PRK07379 coproporphyrinogen II 68.5 41 0.00089 33.6 10.0 90 5-106 85-202 (400)
131 cd07938 DRE_TIM_HMGL 3-hydroxy 67.0 85 0.0018 29.8 11.4 124 26-156 13-169 (274)
132 COG0167 PyrD Dihydroorotate de 66.9 94 0.002 30.4 11.7 122 4-130 148-298 (310)
133 PRK05198 2-dehydro-3-deoxyphos 66.9 72 0.0016 30.6 10.6 82 18-104 9-105 (264)
134 cd02932 OYE_YqiM_FMN Old yello 66.6 44 0.00096 32.4 9.6 97 3-105 205-319 (336)
135 cd07941 DRE_TIM_LeuA3 Desulfob 66.6 1.2E+02 0.0025 28.7 12.6 123 27-156 14-171 (273)
136 cd03319 L-Ala-DL-Glu_epimerase 66.4 1.2E+02 0.0027 28.8 12.6 119 6-134 165-285 (316)
137 PRK09057 coproporphyrinogen II 66.3 78 0.0017 31.3 11.4 90 5-106 74-190 (380)
138 PF09370 TIM-br_sig_trns: TIM- 66.1 12 0.00027 35.7 5.3 122 3-135 66-219 (268)
139 PRK05265 pyridoxine 5'-phospha 65.6 45 0.00097 31.5 8.9 80 11-106 59-154 (239)
140 cd07943 DRE_TIM_HOA 4-hydroxy- 65.4 74 0.0016 29.7 10.5 108 19-132 127-245 (263)
141 cd03326 MR_like_1 Mandelate ra 65.3 90 0.0019 31.1 11.6 117 6-131 192-314 (385)
142 COG0119 LeuA Isopropylmalate/h 64.8 85 0.0018 31.8 11.4 124 25-155 16-165 (409)
143 TIGR01304 IMP_DH_rel_2 IMP deh 64.3 1.6E+02 0.0035 29.4 15.7 96 70-165 180-293 (369)
144 TIGR00559 pdxJ pyridoxine 5'-p 64.1 29 0.00064 32.6 7.3 80 11-106 56-151 (237)
145 PRK09282 pyruvate carboxylase 63.9 67 0.0015 34.1 10.9 82 17-106 140-233 (592)
146 PRK07455 keto-hydroxyglutarate 63.9 40 0.00086 30.1 8.0 139 6-160 27-184 (187)
147 PRK07455 keto-hydroxyglutarate 63.8 80 0.0017 28.2 10.0 127 18-165 12-148 (187)
148 PRK08385 nicotinate-nucleotide 63.2 35 0.00076 32.8 7.9 69 85-157 188-260 (278)
149 cd03174 DRE_TIM_metallolyase D 63.2 93 0.002 28.4 10.6 87 65-153 116-219 (265)
150 TIGR01417 PTS_I_fam phosphoeno 63.2 1.1E+02 0.0024 32.2 12.3 143 18-165 383-534 (565)
151 cd03328 MR_like_3 Mandelate ra 63.1 1.4E+02 0.003 29.2 12.3 120 6-134 169-292 (352)
152 COG1891 Uncharacterized protei 62.7 17 0.00038 33.0 5.3 98 55-153 23-148 (235)
153 TIGR01361 DAHP_synth_Bsub phos 62.6 1.4E+02 0.003 28.2 13.7 79 18-102 24-111 (260)
154 PRK09140 2-dehydro-3-deoxy-6-p 62.6 60 0.0013 29.5 9.1 94 60-161 89-184 (206)
155 TIGR01362 KDO8P_synth 3-deoxy- 62.1 63 0.0014 30.9 9.2 76 24-104 7-97 (258)
156 cd04729 NanE N-acetylmannosami 62.0 1.2E+02 0.0026 27.3 12.8 86 68-160 113-210 (219)
157 PRK07896 nicotinate-nucleotide 61.9 76 0.0016 30.7 10.0 85 68-157 188-275 (289)
158 COG2022 ThiG Uncharacterized e 61.6 1.5E+02 0.0032 28.2 13.1 95 61-157 114-212 (262)
159 TIGR01303 IMP_DH_rel_1 IMP deh 61.0 82 0.0018 32.5 10.7 117 34-158 225-359 (475)
160 cd02810 DHOD_DHPD_FMN Dihydroo 60.8 1.5E+02 0.0032 27.8 13.5 141 17-160 98-276 (289)
161 PRK13523 NADPH dehydrogenase N 60.8 48 0.001 32.5 8.6 101 3-105 193-304 (337)
162 PRK12344 putative alpha-isopro 60.5 1.1E+02 0.0024 31.9 11.7 124 26-156 20-178 (524)
163 cd04730 NPD_like 2-Nitropropan 60.3 1.3E+02 0.0028 27.0 15.0 98 60-164 86-193 (236)
164 PRK07807 inosine 5-monophospha 59.4 74 0.0016 32.9 10.0 117 35-159 228-362 (479)
165 PRK01130 N-acetylmannosamine-6 59.4 1.4E+02 0.0029 27.0 12.0 86 68-160 109-206 (221)
166 PRK06294 coproporphyrinogen II 59.4 96 0.0021 30.6 10.6 89 6-106 78-190 (370)
167 cd07947 DRE_TIM_Re_CS Clostrid 58.3 1.7E+02 0.0038 27.9 13.4 97 31-135 19-135 (279)
168 cd02801 DUS_like_FMN Dihydrour 57.8 1.3E+02 0.0028 26.9 10.4 92 4-105 110-212 (231)
169 PRK06843 inosine 5-monophospha 57.4 2.2E+02 0.0048 28.9 14.4 119 33-159 152-288 (404)
170 PRK09058 coproporphyrinogen II 57.3 1E+02 0.0022 31.3 10.6 77 18-106 150-250 (449)
171 cd07940 DRE_TIM_IPMS 2-isoprop 57.1 1.7E+02 0.0037 27.3 13.9 122 28-156 15-163 (268)
172 PLN03033 2-dehydro-3-deoxyphos 56.9 2E+02 0.0042 28.0 14.7 109 17-130 14-159 (290)
173 PRK11061 fused phosphoenolpyru 56.6 1.6E+02 0.0036 32.1 12.5 78 88-165 621-701 (748)
174 PRK07028 bifunctional hexulose 56.4 1.6E+02 0.0034 29.6 11.7 118 30-158 13-140 (430)
175 PRK06582 coproporphyrinogen II 56.1 1.6E+02 0.0034 29.4 11.6 77 18-106 98-197 (390)
176 cd03316 MR_like Mandelate race 55.9 1.9E+02 0.0041 27.9 11.8 117 5-130 175-293 (357)
177 cd03324 rTSbeta_L-fuconate_deh 55.9 1.7E+02 0.0036 29.6 11.7 119 6-133 227-350 (415)
178 PF00218 IGPS: Indole-3-glycer 55.8 1.9E+02 0.004 27.4 14.4 153 6-161 71-243 (254)
179 TIGR01163 rpe ribulose-phospha 55.6 1.4E+02 0.0031 26.1 12.8 118 28-155 6-132 (210)
180 cd03325 D-galactonate_dehydrat 55.6 1.8E+02 0.004 28.3 11.8 118 6-132 163-282 (352)
181 TIGR03217 4OH_2_O_val_ald 4-hy 54.9 2.2E+02 0.0047 27.9 13.6 119 27-155 18-162 (333)
182 PRK00043 thiE thiamine-phospha 54.5 1.5E+02 0.0033 26.0 11.4 104 33-156 21-131 (212)
183 cd01573 modD_like ModD; Quinol 54.5 1.1E+02 0.0025 29.0 9.8 86 67-157 171-259 (272)
184 PF04131 NanE: Putative N-acet 54.3 34 0.00073 31.3 5.8 61 88-153 53-116 (192)
185 cd07944 DRE_TIM_HOA_like 4-hyd 53.8 2E+02 0.0043 27.1 14.1 122 26-155 13-157 (266)
186 PRK01362 putative translaldola 53.6 9.1 0.0002 35.3 2.1 21 301-321 41-61 (214)
187 PRK08091 ribulose-phosphate 3- 53.4 40 0.00086 31.5 6.3 128 30-160 71-211 (228)
188 cd02933 OYE_like_FMN Old yello 53.4 1.6E+02 0.0036 28.7 11.0 97 3-105 203-313 (338)
189 PLN02591 tryptophan synthase 53.4 2E+02 0.0043 27.1 12.0 123 40-165 96-227 (250)
190 PRK05904 coproporphyrinogen II 53.4 1.1E+02 0.0023 30.2 9.7 89 6-106 76-190 (353)
191 cd06556 ICL_KPHMT Members of t 53.1 2E+02 0.0043 26.9 11.8 116 6-137 61-200 (240)
192 COG0821 gcpE 1-hydroxy-2-methy 53.0 2.5E+02 0.0054 28.1 12.1 105 18-132 20-127 (361)
193 cd04734 OYE_like_3_FMN Old yel 52.9 82 0.0018 30.8 8.8 97 3-105 192-314 (343)
194 cd00564 TMP_TenI Thiamine mono 52.0 1.5E+02 0.0033 25.3 15.0 133 18-161 25-183 (196)
195 PRK07565 dihydroorotate dehydr 52.0 2.2E+02 0.0047 27.6 11.5 117 5-131 153-297 (334)
196 smart00052 EAL Putative diguan 51.7 1.7E+02 0.0036 25.7 14.0 129 18-153 85-228 (241)
197 PRK00507 deoxyribose-phosphate 51.2 2E+02 0.0044 26.5 13.7 154 5-163 45-217 (221)
198 cd03329 MR_like_4 Mandelate ra 51.0 2.5E+02 0.0054 27.5 12.9 120 5-133 175-297 (368)
199 TIGR00736 nifR3_rel_arch TIM-b 51.0 1.9E+02 0.0041 27.0 10.4 93 4-105 122-219 (231)
200 TIGR01334 modD putative molybd 50.9 1.5E+02 0.0032 28.5 9.9 68 86-157 195-264 (277)
201 cd03322 rpsA The starvation se 50.7 2.5E+02 0.0055 27.5 12.7 122 6-136 150-273 (361)
202 PRK10605 N-ethylmaleimide redu 50.7 1.1E+02 0.0024 30.2 9.4 98 3-105 210-320 (362)
203 cd02911 arch_FMN Archeal FMN-b 50.6 1.7E+02 0.0037 27.0 10.1 88 4-105 127-219 (233)
204 TIGR00034 aroFGH phospho-2-deh 50.5 79 0.0017 31.4 8.2 79 7-89 36-142 (344)
205 cd04739 DHOD_like Dihydroorota 50.5 2.5E+02 0.0053 27.3 13.1 126 4-131 150-295 (325)
206 PRK11177 phosphoenolpyruvate-p 50.4 1.3E+02 0.0029 31.8 10.3 144 17-165 383-535 (575)
207 PRK06096 molybdenum transport 50.3 1.8E+02 0.004 28.0 10.5 85 68-157 178-265 (284)
208 PRK09282 pyruvate carboxylase 49.6 3.5E+02 0.0076 28.8 14.6 61 45-106 104-174 (592)
209 KOG2335|consensus 49.5 1.5E+02 0.0033 29.6 9.9 89 3-101 127-228 (358)
210 PRK15072 bifunctional D-altron 49.0 2.9E+02 0.0062 27.6 12.4 120 6-135 193-315 (404)
211 PRK12999 pyruvate carboxylase; 48.8 1.3E+02 0.0029 34.5 10.6 80 18-103 672-763 (1146)
212 cd03327 MR_like_2 Mandelate ra 48.3 2.6E+02 0.0056 27.1 11.5 117 6-131 158-276 (341)
213 cd01568 QPRTase_NadC Quinolina 48.2 1.8E+02 0.004 27.5 10.1 70 83-157 185-256 (269)
214 PRK05742 nicotinate-nucleotide 47.9 1.3E+02 0.0028 28.9 9.0 94 54-157 161-262 (277)
215 PRK12756 phospho-2-dehydro-3-d 47.9 85 0.0018 31.2 7.9 73 8-84 41-141 (348)
216 PRK12331 oxaloacetate decarbox 47.7 3.3E+02 0.0071 27.9 14.9 60 46-106 105-174 (448)
217 TIGR00973 leuA_bact 2-isopropy 47.2 3.5E+02 0.0075 28.1 13.6 124 26-156 16-166 (494)
218 PRK08208 coproporphyrinogen II 47.2 1.7E+02 0.0037 29.5 10.3 76 19-106 129-228 (430)
219 COG1709 Predicted transcriptio 47.2 24 0.00053 32.9 3.8 41 86-126 38-82 (241)
220 cd07938 DRE_TIM_HMGL 3-hydroxy 47.1 2.3E+02 0.0049 26.9 10.6 92 31-131 147-258 (274)
221 PF00563 EAL: EAL domain; Int 47.1 1.1E+02 0.0023 26.9 7.9 127 17-153 87-228 (236)
222 COG1902 NemA NADH:flavin oxido 46.9 99 0.0022 30.8 8.4 100 3-104 200-316 (363)
223 cd02808 GltS_FMN Glutamate syn 46.9 2.7E+02 0.0059 27.8 11.5 52 112-163 265-321 (392)
224 PRK02506 dihydroorotate dehydr 46.9 1.1E+02 0.0023 29.6 8.5 121 5-131 145-299 (310)
225 PRK08195 4-hyroxy-2-oxovalerat 46.7 2.9E+02 0.0063 27.0 12.2 120 26-155 18-163 (337)
226 cd01948 EAL EAL domain. This d 46.4 2E+02 0.0044 25.1 12.7 131 16-153 82-227 (240)
227 cd00331 IGPS Indole-3-glycerol 46.0 2E+02 0.0043 25.7 9.6 122 19-154 12-146 (217)
228 PRK00043 thiE thiamine-phospha 45.5 2.1E+02 0.0046 25.1 15.4 122 30-160 45-192 (212)
229 TIGR01108 oadA oxaloacetate de 45.0 4.1E+02 0.0089 28.2 15.0 87 18-105 34-168 (582)
230 TIGR01949 AroFGH_arch predicte 44.9 2E+02 0.0044 26.6 9.8 66 89-161 158-232 (258)
231 PRK08673 3-deoxy-7-phosphohept 44.9 1.7E+02 0.0036 29.0 9.5 80 17-102 91-179 (335)
232 cd03318 MLE Muconate Lactonizi 44.0 3.1E+02 0.0068 26.6 12.3 118 6-132 175-294 (365)
233 PRK13347 coproporphyrinogen II 43.9 71 0.0015 32.4 7.0 90 5-106 122-239 (453)
234 PRK08898 coproporphyrinogen II 43.9 2.1E+02 0.0046 28.4 10.3 90 5-106 92-208 (394)
235 PRK00694 4-hydroxy-3-methylbut 43.7 4.1E+02 0.0089 28.4 12.4 76 19-101 30-110 (606)
236 PRK08072 nicotinate-nucleotide 43.5 1.9E+02 0.0042 27.7 9.5 96 54-158 159-262 (277)
237 PRK09016 quinolinate phosphori 43.2 1.8E+02 0.004 28.2 9.3 96 54-157 180-281 (296)
238 TIGR00742 yjbN tRNA dihydrouri 42.9 2.4E+02 0.0053 27.4 10.3 104 4-113 110-231 (318)
239 PRK09249 coproporphyrinogen II 42.7 2.1E+02 0.0045 29.0 10.1 90 5-106 121-238 (453)
240 PF00682 HMGL-like: HMGL-like 42.5 1.7E+02 0.0037 26.4 8.7 103 18-126 122-235 (237)
241 TIGR02320 PEP_mutase phosphoen 42.3 3.2E+02 0.0069 26.3 12.4 149 7-164 68-248 (285)
242 PRK07565 dihydroorotate dehydr 41.8 3.3E+02 0.0072 26.3 15.4 140 11-161 95-273 (334)
243 TIGR00970 leuA_yeast 2-isoprop 41.8 2.8E+02 0.0062 29.3 11.2 110 22-133 171-298 (564)
244 cd02940 DHPD_FMN Dihydropyrimi 41.3 3E+02 0.0066 26.1 10.6 41 67-107 239-282 (299)
245 cd00381 IMPDH IMPDH: The catal 40.1 1.4E+02 0.0031 29.0 8.2 66 88-155 95-162 (325)
246 cd04728 ThiG Thiazole synthase 39.9 3E+02 0.0065 26.2 9.9 90 7-106 83-204 (248)
247 PRK15440 L-rhamnonate dehydrat 39.7 4E+02 0.0087 26.7 12.0 118 6-133 195-317 (394)
248 PRK05799 coproporphyrinogen II 39.5 3.7E+02 0.0081 26.2 12.6 76 19-106 87-186 (374)
249 PRK06267 hypothetical protein; 39.4 1.8E+02 0.0038 28.6 8.8 89 65-154 154-263 (350)
250 PRK02048 4-hydroxy-3-methylbut 39.4 4.4E+02 0.0096 28.3 12.0 76 19-101 26-106 (611)
251 TIGR00078 nadC nicotinate-nucl 39.1 2.1E+02 0.0045 27.2 8.9 83 66-157 167-251 (265)
252 PRK11750 gltB glutamate syntha 39.0 1.5E+02 0.0033 34.9 9.2 128 10-163 957-1103(1485)
253 KOG2666|consensus 38.8 1.2E+02 0.0027 30.3 7.3 78 11-98 139-221 (481)
254 PRK05286 dihydroorotate dehydr 38.7 2.7E+02 0.0058 27.2 9.9 97 4-106 193-318 (344)
255 PRK05692 hydroxymethylglutaryl 38.7 1.7E+02 0.0038 27.9 8.4 97 30-133 152-266 (287)
256 cd00739 DHPS DHPS subgroup of 38.6 1.3E+02 0.0029 28.2 7.5 53 32-85 145-205 (257)
257 PRK10060 RNase II stability mo 38.5 2.7E+02 0.0059 29.5 10.6 126 19-153 494-636 (663)
258 cd02930 DCR_FMN 2,4-dienoyl-Co 38.4 1.9E+02 0.004 28.3 8.8 100 3-104 188-304 (353)
259 PRK05628 coproporphyrinogen II 38.4 3.8E+02 0.0083 26.2 11.0 76 19-106 96-195 (375)
260 cd07937 DRE_TIM_PC_TC_5S Pyruv 38.2 3.5E+02 0.0075 25.5 10.3 97 30-132 146-252 (275)
261 TIGR01235 pyruv_carbox pyruvat 38.0 2.1E+02 0.0045 33.0 10.0 82 16-103 668-761 (1143)
262 PRK06464 phosphoenolpyruvate s 38.0 4.5E+02 0.0098 29.0 12.4 55 111-165 724-782 (795)
263 PRK00278 trpC indole-3-glycero 38.0 2.6E+02 0.0057 26.2 9.4 114 41-157 74-188 (260)
264 TIGR02814 pfaD_fam PfaD family 37.9 4.3E+02 0.0094 27.2 11.5 93 55-155 137-252 (444)
265 PRK13561 putative diguanylate 37.9 4.9E+02 0.011 27.2 12.6 129 17-153 485-629 (651)
266 TIGR00875 fsa_talC_mipB fructo 37.6 25 0.00054 32.4 2.3 20 301-320 41-60 (213)
267 cd03320 OSBS o-Succinylbenzoat 37.5 3.4E+02 0.0073 25.1 11.0 117 6-133 114-232 (263)
268 cd04738 DHOD_2_like Dihydrooro 37.5 3.9E+02 0.0084 25.8 12.3 67 93-159 223-312 (327)
269 PRK11320 prpB 2-methylisocitra 37.4 3.9E+02 0.0085 25.8 10.9 120 19-151 152-278 (292)
270 PLN02424 ketopantoate hydroxym 37.3 2.5E+02 0.0055 27.8 9.3 69 6-82 84-155 (332)
271 TIGR01418 PEP_synth phosphoeno 37.2 4.7E+02 0.01 28.8 12.3 131 32-164 609-774 (782)
272 TIGR00737 nifR3_yhdG putative 36.9 3.8E+02 0.0083 25.6 10.9 39 67-105 181-221 (319)
273 COG2877 KdsA 3-deoxy-D-manno-o 36.9 1.3E+02 0.0029 28.7 6.9 76 19-98 17-107 (279)
274 cd04866 LigD_Pol_like_3 LigD_P 36.0 1.5E+02 0.0031 27.8 7.1 37 16-52 92-128 (223)
275 PRK10550 tRNA-dihydrouridine s 35.9 4.1E+02 0.0089 25.7 10.9 100 3-112 117-231 (312)
276 COG0502 BioB Biotin synthase a 35.7 77 0.0017 31.4 5.5 71 28-106 82-161 (335)
277 PRK00208 thiG thiazole synthas 35.7 4E+02 0.0086 25.4 10.0 88 7-104 83-202 (250)
278 PRK07695 transcriptional regul 35.6 3.1E+02 0.0068 24.2 9.3 129 18-160 27-181 (201)
279 TIGR03151 enACPred_II putative 35.4 3.8E+02 0.0082 25.8 10.2 84 68-158 100-192 (307)
280 cd07942 DRE_TIM_LeuA Mycobacte 35.1 4.1E+02 0.009 25.4 11.7 98 26-130 16-135 (284)
281 PRK08255 salicylyl-CoA 5-hydro 34.9 2.2E+02 0.0048 31.0 9.4 97 3-105 602-716 (765)
282 PRK14041 oxaloacetate decarbox 34.7 5.4E+02 0.012 26.6 13.2 56 47-105 105-172 (467)
283 COG1304 idi Isopentenyl diphos 34.6 1.7E+02 0.0036 29.2 7.8 91 78-168 218-314 (360)
284 PRK11815 tRNA-dihydrouridine s 34.4 3E+02 0.0064 26.8 9.4 96 4-105 120-232 (333)
285 COG0107 HisF Imidazoleglycerol 34.2 2.8E+02 0.0061 26.4 8.6 90 42-136 35-129 (256)
286 PRK14017 galactonate dehydrata 33.7 4.7E+02 0.01 25.7 11.8 119 6-133 164-284 (382)
287 TIGR00539 hemN_rel putative ox 33.6 1.8E+02 0.0039 28.4 7.8 77 18-106 87-187 (360)
288 PRK13396 3-deoxy-7-phosphohept 33.4 3.2E+02 0.0069 27.2 9.5 77 19-102 101-187 (352)
289 PRK12581 oxaloacetate decarbox 33.3 4.7E+02 0.01 27.1 10.9 62 44-106 112-183 (468)
290 PLN02495 oxidoreductase, actin 33.2 1.3E+02 0.0027 30.4 6.7 125 5-130 170-327 (385)
291 PRK14057 epimerase; Provisiona 33.1 1.6E+02 0.0035 28.0 7.0 128 30-160 78-225 (254)
292 PF04551 GcpE: GcpE protein; 32.5 5.3E+02 0.011 25.9 12.2 106 19-133 16-136 (359)
293 PRK14040 oxaloacetate decarbox 32.5 6.4E+02 0.014 26.9 16.5 87 18-105 40-174 (593)
294 TIGR02534 mucon_cyclo muconate 32.4 4.8E+02 0.01 25.4 12.7 117 6-131 174-292 (368)
295 PLN02898 HMP-P kinase/thiamin- 32.3 5.7E+02 0.012 26.2 11.7 143 8-160 312-479 (502)
296 PRK11059 regulatory protein Cs 31.5 6.4E+02 0.014 26.5 14.9 135 10-153 476-628 (640)
297 COG2200 Rtn c-di-GMP phosphodi 31.5 3.9E+02 0.0086 24.7 9.4 127 18-153 88-231 (256)
298 PLN02925 4-hydroxy-3-methylbut 31.4 7.4E+02 0.016 27.3 12.2 76 19-101 95-175 (733)
299 cd02911 arch_FMN Archeal FMN-b 31.0 4.3E+02 0.0092 24.4 9.7 129 17-156 72-220 (233)
300 PRK13585 1-(5-phosphoribosyl)- 30.9 2.3E+02 0.005 25.6 7.7 68 89-160 35-109 (241)
301 PRK08649 inosine 5-monophospha 30.9 1.7E+02 0.0036 29.3 7.1 86 68-155 122-214 (368)
302 PLN03228 methylthioalkylmalate 30.7 6.4E+02 0.014 26.3 12.4 126 25-156 98-259 (503)
303 PRK08883 ribulose-phosphate 3- 30.5 4.3E+02 0.0093 24.2 10.3 127 31-161 62-200 (220)
304 PRK13397 3-deoxy-7-phosphohept 30.5 4.8E+02 0.01 24.7 12.2 74 21-103 17-102 (250)
305 PLN02411 12-oxophytodienoate r 30.4 5.6E+02 0.012 25.6 11.3 103 3-105 216-341 (391)
306 cd04864 LigD_Pol_like_1 LigD_P 30.3 2E+02 0.0043 27.0 7.0 36 16-52 99-134 (228)
307 PRK14847 hypothetical protein; 30.1 60 0.0013 32.0 3.8 112 20-134 172-302 (333)
308 TIGR00693 thiE thiamine-phosph 30.1 3.7E+02 0.008 23.3 15.0 130 21-160 29-184 (196)
309 PRK07094 biotin synthase; Prov 30.0 2.2E+02 0.0048 27.1 7.6 101 61-162 161-288 (323)
310 PRK08645 bifunctional homocyst 29.5 3.4E+02 0.0074 28.8 9.6 77 19-103 324-413 (612)
311 TIGR03217 4OH_2_O_val_ald 4-hy 29.5 4.4E+02 0.0095 25.8 9.7 99 28-132 138-248 (333)
312 cd01572 QPRTase Quinolinate ph 29.0 4E+02 0.0087 25.2 9.1 66 83-155 186-253 (268)
313 PRK08318 dihydropyrimidine deh 28.6 6E+02 0.013 25.3 12.6 64 67-130 239-310 (420)
314 cd04862 PaeLigD_Pol_like PaeLi 28.5 2.3E+02 0.0049 26.6 7.1 37 16-52 97-133 (227)
315 PRK06256 biotin synthase; Vali 27.7 3.9E+02 0.0085 25.6 9.0 92 66-158 189-302 (336)
316 TIGR01927 menC_gamma/gm+ o-suc 27.3 5.6E+02 0.012 24.5 12.0 120 6-134 141-263 (307)
317 PRK12330 oxaloacetate decarbox 27.3 6.2E+02 0.014 26.5 10.7 120 28-156 22-175 (499)
318 PF00793 DAHP_synth_1: DAHP sy 26.8 1.1E+02 0.0023 29.3 4.7 110 14-128 11-158 (270)
319 cd00308 enolase_like Enolase-s 26.7 4.7E+02 0.01 23.5 12.6 119 6-133 81-201 (229)
320 cd04747 OYE_like_5_FMN Old yel 26.5 4.5E+02 0.0097 26.1 9.2 101 3-105 195-327 (361)
321 PLN02274 inosine-5'-monophosph 26.4 2.6E+02 0.0057 29.1 7.9 67 87-155 248-316 (505)
322 cd03323 D-glucarate_dehydratas 26.1 6.6E+02 0.014 25.0 12.6 117 6-135 201-319 (395)
323 PF00154 RecA: recA bacterial 26.1 2.8E+02 0.0061 27.3 7.6 59 5-76 70-129 (322)
324 PRK02615 thiamine-phosphate py 25.9 6.6E+02 0.014 24.9 15.2 135 18-160 170-326 (347)
325 PRK13802 bifunctional indole-3 25.8 9E+02 0.019 26.4 15.8 150 6-159 73-243 (695)
326 PRK05458 guanosine 5'-monophos 25.6 6.5E+02 0.014 24.7 13.1 118 34-160 97-234 (326)
327 cd07942 DRE_TIM_LeuA Mycobacte 25.3 2.1E+02 0.0044 27.5 6.4 55 78-132 213-269 (284)
328 cd00945 Aldolase_Class_I Class 25.2 4.2E+02 0.0091 22.4 14.4 140 7-156 35-201 (201)
329 PTZ00450 macrophage migration 25.2 1.9E+02 0.0041 23.8 5.4 32 31-62 70-102 (113)
330 TIGR02090 LEU1_arch isopropylm 25.1 5.6E+02 0.012 25.2 9.7 96 30-133 138-246 (363)
331 cd04733 OYE_like_2_FMN Old yel 25.0 6.3E+02 0.014 24.4 10.9 97 3-105 200-321 (338)
332 PTZ00170 D-ribulose-5-phosphat 25.0 3E+02 0.0064 25.3 7.2 104 19-131 4-117 (228)
333 PLN02460 indole-3-glycerol-pho 24.9 6.9E+02 0.015 24.8 13.4 155 6-161 142-322 (338)
334 PRK06559 nicotinate-nucleotide 24.7 2.6E+02 0.0056 27.1 6.9 96 54-157 168-270 (290)
335 cd04738 DHOD_2_like Dihydrooro 24.6 6.4E+02 0.014 24.3 10.4 40 67-106 267-309 (327)
336 PTZ00397 macrophage migration 24.5 2.1E+02 0.0045 23.1 5.5 33 30-62 69-102 (116)
337 TIGR01305 GMP_reduct_1 guanosi 24.2 7.2E+02 0.016 24.8 15.7 140 8-156 86-241 (343)
338 TIGR01496 DHPS dihydropteroate 24.0 3.5E+02 0.0075 25.4 7.6 54 31-85 142-203 (257)
339 TIGR00538 hemN oxygen-independ 23.9 2.6E+02 0.0057 28.3 7.3 89 6-106 122-238 (455)
340 TIGR01859 fruc_bis_ald_ fructo 23.9 5.3E+02 0.011 24.6 8.9 88 69-156 64-173 (282)
341 PRK13111 trpA tryptophan synth 23.5 6.3E+02 0.014 23.8 12.3 150 6-165 77-237 (258)
342 PRK02714 O-succinylbenzoate sy 23.4 6.6E+02 0.014 24.1 9.6 117 6-133 150-270 (320)
343 PRK06843 inosine 5-monophospha 23.4 2.5E+02 0.0053 28.6 6.8 66 87-154 153-220 (404)
344 cd04735 OYE_like_4_FMN Old yel 23.3 4.4E+02 0.0094 25.8 8.5 101 3-106 195-313 (353)
345 PF01207 Dus: Dihydrouridine s 23.2 3.1E+02 0.0067 26.3 7.3 87 4-101 109-208 (309)
346 COG0269 SgbH 3-hexulose-6-phos 22.5 6.4E+02 0.014 23.5 12.9 109 36-153 15-134 (217)
347 PLN02826 dihydroorotate dehydr 22.4 2.3E+02 0.0049 28.8 6.4 64 66-129 327-397 (409)
348 cd04824 eu_ALAD_PBGS_cysteine_ 22.2 1.7E+02 0.0038 28.8 5.2 49 83-135 138-188 (320)
349 PLN02746 hydroxymethylglutaryl 22.0 7.8E+02 0.017 24.4 10.8 135 18-162 180-335 (347)
350 TIGR03151 enACPred_II putative 22.0 3.5E+02 0.0075 26.1 7.3 80 65-155 52-135 (307)
351 PF02548 Pantoate_transf: Keto 22.0 5.1E+02 0.011 24.8 8.3 78 7-93 66-146 (261)
352 cd07941 DRE_TIM_LeuA3 Desulfob 21.9 6.6E+02 0.014 23.5 9.3 88 30-125 148-248 (273)
353 KOG4201|consensus 21.9 1.2E+02 0.0027 28.5 4.0 64 88-154 93-164 (289)
354 PLN02281 chlorophyllide a oxyg 21.8 2.3E+02 0.005 29.9 6.4 34 286-319 146-179 (536)
355 PLN02925 4-hydroxy-3-methylbut 21.7 1.1E+02 0.0023 33.4 4.0 58 17-76 232-291 (733)
356 cd02809 alpha_hydroxyacid_oxid 21.5 2.9E+02 0.0063 26.3 6.7 85 7-106 162-259 (299)
357 COG0352 ThiE Thiamine monophos 21.5 3E+02 0.0064 25.4 6.4 69 89-157 24-132 (211)
358 TIGR01302 IMP_dehydrog inosine 21.4 2.8E+02 0.0062 28.2 6.9 66 87-154 224-291 (450)
359 PRK08745 ribulose-phosphate 3- 21.3 6.5E+02 0.014 23.2 10.4 124 33-160 68-203 (223)
360 COG0113 HemB Delta-aminolevuli 21.2 3E+02 0.0064 27.2 6.5 48 84-135 148-196 (330)
361 PF01180 DHO_dh: Dihydroorotat 21.2 90 0.002 29.5 3.1 115 5-125 150-292 (295)
362 PRK05793 amidophosphoribosyltr 21.1 9.1E+02 0.02 24.8 11.3 122 36-164 275-440 (469)
363 PF12118 SprA-related: SprA-re 21.1 1.2E+02 0.0026 29.6 3.9 29 16-45 189-217 (294)
364 cd01948 EAL EAL domain. This d 21.1 2.5E+02 0.0055 24.5 5.8 48 57-104 170-228 (240)
365 PF14552 Tautomerase_2: Tautom 21.0 2.3E+02 0.005 22.0 4.9 45 17-61 27-72 (82)
366 PF00682 HMGL-like: HMGL-like 20.9 6.1E+02 0.013 22.7 11.8 123 28-156 9-157 (237)
367 PRK07445 O-succinylbenzoic aci 20.8 5.2E+02 0.011 25.6 8.6 69 27-96 17-88 (452)
368 PRK00979 tetrahydromethanopter 20.7 4.1E+02 0.0088 26.1 7.5 60 19-81 150-222 (308)
369 PRK09875 putative hydrolase; P 20.4 7.7E+02 0.017 23.7 14.4 158 2-166 99-272 (292)
370 TIGR01928 menC_lowGC/arch o-su 20.3 7.7E+02 0.017 23.6 12.7 116 7-133 162-279 (324)
371 cd00958 DhnA Class I fructose- 20.2 6.4E+02 0.014 22.7 11.8 122 29-160 72-218 (235)
372 PRK07535 methyltetrahydrofolat 20.2 3.5E+02 0.0076 25.5 6.8 55 29-83 130-194 (261)
373 PRK08599 coproporphyrinogen II 20.1 8.2E+02 0.018 23.9 12.8 90 5-106 70-187 (377)
374 cd07939 DRE_TIM_NifV Streptomy 20.1 7E+02 0.015 23.0 11.6 97 30-132 136-243 (259)
375 PRK06978 nicotinate-nucleotide 20.0 3.6E+02 0.0079 26.2 7.0 94 54-157 177-278 (294)
No 1
>PRK12346 transaldolase A; Provisional
Probab=100.00 E-value=1.8e-67 Score=503.01 Aligned_cols=227 Identities=63% Similarity=0.989 Sum_probs=210.6
Q ss_pred CcHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCce
Q psy10958 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 1 ~d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~ 80 (321)
+|++.+.||.++++++||+||+||||++++|+++||++|++|+++|++.||+++|++||||+||+||+|+++|+++ ||+
T Consensus 73 ~D~l~v~~g~ei~~~v~G~Vs~EVdp~la~d~e~~i~~A~~l~~l~~~~gi~~~~i~IKIPaT~eGi~A~~~L~~~-GI~ 151 (316)
T PRK12346 73 CDKLAVNFGAEILKSVPGRVSTEVDARLSFDREKSIEKARHLVDLYQQQGIDKSRILIKLASTWEGIRAAEELEKE-GIN 151 (316)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEccccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHHHHHHHC-CCc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecC-CCC----------------CCCchHHHHHHHHHHHhcCCceEEeecccCCHhH
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPY-APT----------------EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE 143 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf-~~~----------------~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~ 143 (321)
||+|+|||+.||.+|++|||+||||| +|+ ++||+.++++||++|+++||+|+||+|||||++|
T Consensus 152 ~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~q 231 (316)
T PRK12346 152 CNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQ 231 (316)
T ss_pred eeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHH
Confidence 99999999999999999999999999 332 5799999999999999999999999999999999
Q ss_pred HHHHhCCCeEEeCHHHHHHHhcCCCCcccccCchhhhhcccccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchhc
Q psy10958 144 ILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223 (321)
Q Consensus 144 v~~LaG~d~vTipp~~l~~l~~~~~~v~~~l~~~~~~~~~~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~K 223 (321)
|.+|+|||++||||+++++|.+++++++++|+++.+..
T Consensus 232 i~alaG~d~lTi~p~ll~~L~~~~~~~~~~l~~~~~~~------------------------------------------ 269 (316)
T PRK12346 232 ILALAGCDRLTISPNLLKELQESESPVERKLIPSSQTF------------------------------------------ 269 (316)
T ss_pred HHHHhCCCEEeCCHHHHHHHHhcCCCcccccChhhhcc------------------------------------------
Confidence 99999999999999999999998887777666421110
Q ss_pred hhhhhhhhcccCCcCCCChHHHHhHhccCchhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q psy10958 224 LTKTFSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRKLETLLKELI 281 (321)
Q Consensus 224 Ll~~laaka~~~~~~~~~e~~Fr~~~n~d~mA~ekL~egIr~F~~d~~~L~~~l~~~~ 281 (321)
..+.++||++|||+||+|+||+|||+||||+|++|+.+|+++|++++
T Consensus 270 -----------~~~~~~~e~~fr~~~~~d~mA~ekl~eGIr~F~~d~~~Le~~i~~~~ 316 (316)
T PRK12346 270 -----------PRPAPMSEAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL 316 (316)
T ss_pred -----------cCCCCCCHHHHHHHhCcCHhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 01246799999999999999999999999999999999999999875
No 2
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=100.00 E-value=6.3e-67 Score=499.87 Aligned_cols=229 Identities=68% Similarity=1.046 Sum_probs=212.1
Q ss_pred CcHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCce
Q psy10958 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 1 ~d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~ 80 (321)
+|++.+.||++|++.++|+||+||||++++|+++||++|++|+++|++.||+++|++||||+||+||+|+++|+++ ||+
T Consensus 72 ~D~l~v~~g~~i~~~i~G~VS~EVdprls~d~~~~i~~A~~l~~l~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~-GI~ 150 (317)
T TIGR00874 72 LDKLAVNFGLEILKIVPGRVSTEVDARLSFDTEATVEKARHLIKLYEDAGVDKKRILIKIASTWEGIRAAEELEKE-GIH 150 (317)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHHHHHHHC-CCc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecC-CCC--------C--------CCchHHHHHHHHHHHhcCCceEEeecccCCHhH
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPY-APT--------E--------DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE 143 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf-~~~--------~--------d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~ 143 (321)
||+|+|||+.||.+|++||++||||| +|. + +||+.++++||++|+++||+|+||+|||||++|
T Consensus 151 vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~q 230 (317)
T TIGR00874 151 CNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEE 230 (317)
T ss_pred eeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHH
Confidence 99999999999999999999999999 432 2 799999999999999999999999999999999
Q ss_pred HHHHhCCCeEEeCHHHHHHHhcCCCCcccccCchhhhhcccccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchhc
Q psy10958 144 ILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223 (321)
Q Consensus 144 v~~LaG~d~vTipp~~l~~l~~~~~~v~~~l~~~~~~~~~~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~K 223 (321)
|.+++|||++||||+++++|.+++++++++|+++.+..
T Consensus 231 v~~laG~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~------------------------------------------ 268 (317)
T TIGR00874 231 ILALAGCDRLTISPALLDELKESTGPVERKLDPESAKK------------------------------------------ 268 (317)
T ss_pred HHHHHCCCeEeCCHHHHHHHHhCCCCcCccCCcccccc------------------------------------------
Confidence 99999999999999999999999888887776532211
Q ss_pred hhhhhhhhcccCCcCCCChHHHHhHhccCchhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q psy10958 224 LTKTFSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRKLETLLKELI 281 (321)
Q Consensus 224 Ll~~laaka~~~~~~~~~e~~Fr~~~n~d~mA~ekL~egIr~F~~d~~~L~~~l~~~~ 281 (321)
.+..+..+||++|||+||+|+||+|||+||||+|++|+++||++|++++
T Consensus 269 ---------~~~~~~~~~e~~fr~~~~~d~ma~ekl~~gir~F~~d~~~Le~~i~~~~ 317 (317)
T TIGR00874 269 ---------VDKQPIILDESEFRFLHNEDAMATEKLAEGIRKFAADQEKLEKLLEEKL 317 (317)
T ss_pred ---------ccccCCCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 0112356799999999999999999999999999999999999999875
No 3
>PTZ00411 transaldolase-like protein; Provisional
Probab=100.00 E-value=8.6e-67 Score=501.81 Aligned_cols=231 Identities=69% Similarity=1.073 Sum_probs=213.7
Q ss_pred CcHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCce
Q psy10958 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 1 ~d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~ 80 (321)
+|+++|+||.+|++.++|+||+||||++++|+++|+++|++|+++|++.||+++|++||||+||+||+|+++|+++ ||+
T Consensus 84 ~d~l~v~~g~~i~~~i~G~VS~EVd~~ls~d~e~~i~~A~~l~~l~~~~gi~~~rilIKIPaT~eGi~Aa~~L~~e-GI~ 162 (333)
T PTZ00411 84 VDKLTVNFGVEILKIVPGRVSTEVDARLSFDKQAMVDKARKIIKMYEEAGISKDRILIKLASTWEGIQAAKALEKE-GIH 162 (333)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEccccccCHHHHHHHHHHHHHhhhhhcCCCCcEEEEeCCCHHHHHHHHHHHHC-CCc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecC-CCC----------------CCCchHHHHHHHHHHHhcCCceEEeecccCCHhH
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPY-APT----------------EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE 143 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf-~~~----------------~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~ 143 (321)
||+|+|||+.||.+|++||+.||||| +|. ++||+.++++||++|+++||+|+||+|||||++|
T Consensus 163 ~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~q 242 (333)
T PTZ00411 163 CNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGE 242 (333)
T ss_pred eeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHH
Confidence 99999999999999999999999999 432 6799999999999999999999999999999999
Q ss_pred HHHHhCCCeEEeCHHHHHHHhcCC-CCcccccCchhhhhcccccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchh
Q psy10958 144 ILALAGCDLMTIGPKLLEELENST-TPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNE 222 (321)
Q Consensus 144 v~~LaG~d~vTipp~~l~~l~~~~-~~v~~~l~~~~~~~~~~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~ 222 (321)
|.+++|||++||||+++++|..++ ++++++|++..+..
T Consensus 243 i~~laG~D~lTi~p~ll~~L~~~~~~~~~~~l~~~~~~~----------------------------------------- 281 (333)
T PTZ00411 243 ILELAGCDKLTISPKLLEELANTEDGPVERKLDPEKLTE----------------------------------------- 281 (333)
T ss_pred HHHHHCCCEEeCCHHHHHHHHhCCCcccCcccCcccccc-----------------------------------------
Confidence 999999999999999999999998 77877777532211
Q ss_pred chhhhhhhhcccCCcCCCChHHHHhHhccCchhhhhHHHHHhhHHHHHHHHHHHHHHHHhc
Q psy10958 223 KLTKTFSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRKLETLLKELILK 283 (321)
Q Consensus 223 KLl~~laaka~~~~~~~~~e~~Fr~~~n~d~mA~ekL~egIr~F~~d~~~L~~~l~~~~~~ 283 (321)
...++.++||++|||+||+|+||+|||+||||+|++|+.+||++|++++..
T Consensus 282 ----------~~~~~~~~~e~~fr~~~~~d~ma~ekl~~gir~F~~d~~~Le~~i~~~~~~ 332 (333)
T PTZ00411 282 ----------DTEKLPELTEKEFRWELNEDAMATEKLAEGIRNFAKDLEKLENVIRAKLTE 332 (333)
T ss_pred ----------cccccCCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 002235679999999999999999999999999999999999999998853
No 4
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=100.00 E-value=2.9e-65 Score=488.24 Aligned_cols=225 Identities=74% Similarity=1.124 Sum_probs=207.4
Q ss_pred CcHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCce
Q psy10958 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 1 ~d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~ 80 (321)
+|++.|++|++|++.++|+||+||||++++|+++||++|++|+++|++.||+++|++||||+||+||+|+++|+++ ||+
T Consensus 72 ~d~l~v~~~~~i~~~i~G~Vs~EVdp~la~d~~~~i~~A~~l~~~~~~~gi~~~~i~IKIPaT~eGi~A~~~L~~~-GI~ 150 (313)
T cd00957 72 LDKLLVNFGTEILKLIPGRVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKIAATWEGIQAAKQLEKE-GIH 150 (313)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHHHHHHHC-CCc
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecC-CCC----------------CCCchHHHHHHHHHHHhcCCceEEeecccCCHhH
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPY-APT----------------EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE 143 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf-~~~----------------~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~ 143 (321)
||+|+|||+.||.+|++||++||||| +|. .|||+.++++||++|+++||+|+||+|||||+.|
T Consensus 151 vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~ 230 (313)
T cd00957 151 CNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQ 230 (313)
T ss_pred eeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHH
Confidence 99999999999999999999999999 432 4589999999999999999999999999999999
Q ss_pred HHHHhCCCeEEeCHHHHHHHhcCCCCcccccCchhhhhcccccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchhc
Q psy10958 144 ILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223 (321)
Q Consensus 144 v~~LaG~d~vTipp~~l~~l~~~~~~v~~~l~~~~~~~~~~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~K 223 (321)
|.+|+|||++|+||+++++|.+++++++++|++.....
T Consensus 231 v~~laG~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~------------------------------------------ 268 (313)
T cd00957 231 ILALAGCDYLTISPALLEELKNSTAKVERKLDPAASKA------------------------------------------ 268 (313)
T ss_pred HHHHhCCCeEEcCHHHHHHHHhCCCccccccCcccccc------------------------------------------
Confidence 99999999999999999999999888877776531110
Q ss_pred hhhhhhhhcccCCcCCCChHHHHhHhccCchhhhhHHHHHhhHHHHHHHHHHHH
Q psy10958 224 LTKTFSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRKLETLL 277 (321)
Q Consensus 224 Ll~~laaka~~~~~~~~~e~~Fr~~~n~d~mA~ekL~egIr~F~~d~~~L~~~l 277 (321)
....+..+||++|||+||+|+||+|||+||||+|++|+++|+++|
T Consensus 269 ---------~~~~~~~~~e~~fr~~~~~d~ma~ekl~~gir~F~~d~~~L~~~~ 313 (313)
T cd00957 269 ---------LDIHPNFLDESAFRWALNEDAMAVEKLSEGIRGFAKDAVKLEKLI 313 (313)
T ss_pred ---------cccccccCCHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 011234679999999999999999999999999999999999875
No 5
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=100.00 E-value=1.2e-64 Score=497.09 Aligned_cols=231 Identities=61% Similarity=0.993 Sum_probs=212.6
Q ss_pred CcHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCce
Q psy10958 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 1 ~d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~ 80 (321)
+|++.|.||++|++.++|+||+||||++++|+++|+++|++|+++|++.||+++|++||||+||+||+|+++|+++ ||+
T Consensus 78 ~d~l~v~~g~~i~~~i~G~Vs~EVdprl~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~-GI~ 156 (391)
T PRK12309 78 FDRLAVAFGLKILKIVPGRVSTEVDARLSYDTEATIAKARKLISLYEDAGISRDRVLIKIASTWEGIKAAEVLEKE-GIH 156 (391)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCCCHHHHHHHHHHHHC-CCc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecC-CCC----------------CCCchHHHHHHHHHHHhcCCceEEeecccCCHhH
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPY-APT----------------EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE 143 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf-~~~----------------~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~ 143 (321)
||+|+|||+.||.+|++||++||||| +|. .|||+..+++||++|+++||+|+||||||||+.|
T Consensus 157 ~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~ 236 (391)
T PRK12309 157 CNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGE 236 (391)
T ss_pred eeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHH
Confidence 99999999999999999999999999 442 2469999999999999999999999999999999
Q ss_pred HHHHhCCCeEEeCHHHHHHHhcCCCCcccccCchhhhhcccccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchhc
Q psy10958 144 ILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223 (321)
Q Consensus 144 v~~LaG~d~vTipp~~l~~l~~~~~~v~~~l~~~~~~~~~~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~K 223 (321)
|.+|+|||++||||+++++|.+++.++++.|+++.+.
T Consensus 237 v~~laG~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~------------------------------------------- 273 (391)
T PRK12309 237 IIELAGCDLLTISPKLLEQLRSTEAELPRKLDPANAA------------------------------------------- 273 (391)
T ss_pred HHHHHCCCeeeCCHHHHHHHHhcCCCcCcccChhhcc-------------------------------------------
Confidence 9999999999999999999999877777666652111
Q ss_pred hhhhhhhhcccCCcCCCChHHHHhHhccCchhhhhHHHHHhhHHHHHHHHHHHHHHHHhc
Q psy10958 224 LTKTFSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRKLETLLKELILK 283 (321)
Q Consensus 224 Ll~~laaka~~~~~~~~~e~~Fr~~~n~d~mA~ekL~egIr~F~~d~~~L~~~l~~~~~~ 283 (321)
..+.+++.+||++|||+||+|+||+|||+||||+|++|+.+|+++|++++..
T Consensus 274 --------~~~~~~~~~~e~~f~~~~~~~~ma~ekl~egi~~F~~d~~~L~~~i~~~~~~ 325 (391)
T PRK12309 274 --------GMEIEKIHMDRATFDKMHAEDRMASEKLDEGIKGFSKALETLEKLLAHRLAR 325 (391)
T ss_pred --------ccccccCCCCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012345779999999999999999999999999999999999999999973
No 6
>KOG2772|consensus
Probab=100.00 E-value=3e-65 Score=474.96 Aligned_cols=232 Identities=65% Similarity=1.007 Sum_probs=211.1
Q ss_pred CcHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCce
Q psy10958 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 1 ~d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~ 80 (321)
+|++.|+||.+|++.+|||||+||||||++||.+||+.|++|+++|++.||+++||+||||+||+||+|+|.|+++ ||+
T Consensus 86 idr~~v~fg~dilk~vpGrVStEVdaRLsfDTq~tvekA~~Likly~~~gv~k~rvliKI~sTwegI~Aar~le~~-GIh 164 (337)
T KOG2772|consen 86 IDRACVLFGTDILKGVPGRVSTEVDARLSFDTQGTVEKARHLIKLYNEEGVPKERVLIKIASTWEGIQAARELEEE-GIH 164 (337)
T ss_pred HHHHHHHhChhhhhcCCCeeeeeecccccccchhHHHHHHHHHHHHHhcCCChheEEEecccccchhHHHHHHHhc-Cce
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecC-----------------CCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhH
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPY-----------------APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE 143 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf-----------------~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~ 143 (321)
||+|++||+.||++|++||+++|||| ...+|||+.+++.+|+||+++||+|.||+|||||..+
T Consensus 165 cnmTllFSfaQAVacAea~vtliSpFVgRi~dw~~~~t~~ka~~~~~dpgV~sv~~iYnyykKfgykt~Vm~asfrn~~e 244 (337)
T KOG2772|consen 165 CNMTLLFSFAQAVACAEAGVTLISPFVGRILDWYKANTGQKAYKAREDPGVASVKKIYNYYKKFGYKTLVMAASFRNTGE 244 (337)
T ss_pred eeeeehHHHHHHHHHHhcCCeeehhHHHHHHHHHHhccCchhccccCCchHHHHHHHHHHHHHhhHHHHHHHHHhhchhh
Confidence 99999999999999999999999999 2457899999999999999999999999999999999
Q ss_pred HHHHhCCCeEEeCHHHHHHHhcCCCCcccccCchhhhhcccccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchhc
Q psy10958 144 ILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223 (321)
Q Consensus 144 v~~LaG~d~vTipp~~l~~l~~~~~~v~~~l~~~~~~~~~~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~K 223 (321)
|..|+|||++||||.++++|.+++..++..+++.
T Consensus 245 ik~lag~D~ltisp~ll~~l~~s~~~~~~~l~a~---------------------------------------------- 278 (337)
T KOG2772|consen 245 IKNLAGVDYLTISPALLPQLVNSTEDQPLELSAS---------------------------------------------- 278 (337)
T ss_pred hhhcccCceeeecHHHHHHHhhCCCccchhhhhh----------------------------------------------
Confidence 9999999999999999999999654333222211
Q ss_pred hhhhhhhhcccCCcCC-CChHHHHhHhccCchhhhhHHHHHhhHHHHHHHHHHHHHHHHhcc
Q psy10958 224 LTKTFSAKKANLDKIT-LDESAFRWELNEDPMATEKLSDGIRKFAVDSRKLETLLKELILKK 284 (321)
Q Consensus 224 Ll~~laaka~~~~~~~-~~e~~Fr~~~n~d~mA~ekL~egIr~F~~d~~~L~~~l~~~~~~~ 284 (321)
.++..+.++++ .||+.|||.+|+|+||+|||+||||+|++|.++|+++|.+++...
T Consensus 279 -----~ak~~~~~k~~y~de~~fr~~lned~ma~eklseGI~~Fa~d~~~L~~ll~~k~~~~ 335 (337)
T KOG2772|consen 279 -----HAKLKDLEKVSYSDEEGFRWDLNEDAMATEKLSEGIRKFAKDAETLEKLLEKKANTL 335 (337)
T ss_pred -----hhhccCcccccccchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 12233344556 489999999999999999999999999999999999999988643
No 7
>PRK05269 transaldolase B; Provisional
Probab=100.00 E-value=4.8e-64 Score=481.30 Aligned_cols=228 Identities=68% Similarity=1.056 Sum_probs=210.8
Q ss_pred CcHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCce
Q psy10958 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 1 ~d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~ 80 (321)
+|++.+.||.+|+++++|+||+||||++++|+++||++|++|+++|++.||+++|++||||+||+||+|+++|+++ ||+
T Consensus 74 ~d~l~v~~g~ei~~~i~G~Vs~EVdp~l~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~-GI~ 152 (318)
T PRK05269 74 IDKLAVNFGLEILKLIPGRVSTEVDARLSFDTEATIAKARKLIALYEEAGISKDRILIKIASTWEGIRAAEQLEKE-GIN 152 (318)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHHHHHHHc-CCc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecC-CCC----------------CCCchHHHHHHHHHHHhcCCceEEeecccCCHhH
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPY-APT----------------EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE 143 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf-~~~----------------~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~ 143 (321)
||+|+|||+.||.+|++|||+||||| +|. ++||+.++++||++|+++|++|+||+|||||+.|
T Consensus 153 vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~ 232 (318)
T PRK05269 153 CNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQ 232 (318)
T ss_pred eeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHH
Confidence 99999999999999999999999999 332 4699999999999999999999999999999999
Q ss_pred HHHHhCCCeEEeCHHHHHHHhcCCCCcccccCchhhhhcccccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchhc
Q psy10958 144 ILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223 (321)
Q Consensus 144 v~~LaG~d~vTipp~~l~~l~~~~~~v~~~l~~~~~~~~~~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~K 223 (321)
|.+|+|||++||||+++++|.++++++.++|++..+.. ..
T Consensus 233 v~~laG~d~vTi~p~ll~~l~~~~~~~~~~l~~~~~~~-------------------------------------~~--- 272 (318)
T PRK05269 233 ILELAGCDRLTISPALLEELAASEGELERKLSPPGEAK-------------------------------------AR--- 272 (318)
T ss_pred HHHHhCCCeEECCHHHHHHHHhcCCCccccCCCccccc-------------------------------------cc---
Confidence 99999999999999999999998888877776511110 00
Q ss_pred hhhhhhhhcccCCcCCCChHHHHhHhccCchhhhhHHHHHhhHHHHHHHHHHHHHHHHh
Q psy10958 224 LTKTFSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRKLETLLKELIL 282 (321)
Q Consensus 224 Ll~~laaka~~~~~~~~~e~~Fr~~~n~d~mA~ekL~egIr~F~~d~~~L~~~l~~~~~ 282 (321)
+.+++|++|||++|+|+||+|||+||||+|++|+++|+++|++++.
T Consensus 273 -------------~~~~~e~~f~~~~~~d~ma~ekl~egi~~F~~~~~~L~~~i~~~~~ 318 (318)
T PRK05269 273 -------------PVPLTEAEFRWQHNEDAMATEKLAEGIRKFAKDQEKLEKLIAAKLA 318 (318)
T ss_pred -------------cccCCHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1356899999999999999999999999999999999999999873
No 8
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=100.00 E-value=2.6e-48 Score=368.52 Aligned_cols=211 Identities=42% Similarity=0.687 Sum_probs=185.6
Q ss_pred CcHHHHHHHHHHhccC--CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhC
Q psy10958 1 MDKLVILFGTEILNII--PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYG 78 (321)
Q Consensus 1 ~d~~~v~~~~~i~~~~--~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~G 78 (321)
+|++++++++++++.+ +|+||+||+|++++|+++|+++|++|+++++ ++|++||||+||+||+|+++|+++ |
T Consensus 58 ~~~l~~~~~~~~~~~lg~~G~vsvqv~p~~~~d~e~~i~~A~~l~~~~~-----r~~v~IKIPaT~~Gi~A~~~L~~~-G 131 (287)
T PF00923_consen 58 YDKLAVEDGREALDLLGKDGPVSVQVDPRLAYDAEEMIEEARRLHALFE-----RPNVVIKIPATEEGIKAIKELEAE-G 131 (287)
T ss_dssp HHHHHHHHHHHHHCCHTSSSEEEEE-SGGGTTSHHHHHHHHHHHHHHHH-----GGTEEEEEESSHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCCccccCHHHHHHHHHHHHHhcc-----ccCeeEECCCCHHHHHHHHHHhhC-C
Confidence 3789999999999999 9999999999999999999999999999975 789999999999999999999998 9
Q ss_pred ceeeeeeccCHHHHHHHHHhcCceeecC-CC---CC------------CCchHHHHHHHHHHHhcCCceEEeecccCCHh
Q psy10958 79 IHCNLTLLFAFAQAVACAEAGVTLISPY-AP---TE------------DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTG 142 (321)
Q Consensus 79 I~vn~TlvFS~~Qa~aaa~Aga~~iSpf-~~---~~------------d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~ 142 (321)
|+||+|+|||+.||.+|++||++||||| +| .. ++|++.++++|++|++++++|++|+||||++.
T Consensus 132 I~vn~T~vfs~~Qa~~aa~AGa~~isp~vgRld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~t~v~~as~r~~~ 211 (287)
T PF00923_consen 132 IPVNATLVFSVEQAIAAAQAGASYISPYVGRLDDWGKRLQGEDALKGEHDGVALAKEIYQYYRKYGYKTKVLAASFRNVQ 211 (287)
T ss_dssp -EEEEEEE-SHHHHHHHHHTT-SEEEEBHHHHHHHHHHHSCCHHCGGGSHHHHHHHHHHHHHHHHTESSEEEEBSSSSHH
T ss_pred ceEEEEecccHHHHHHHHhcccceEeeeHHHHHHHhhhhcccccccccccHHHHHHHHHHHHHHhCCCcceeccCcCCHH
Confidence 9999999999999999999999999999 22 12 69999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEeCHHHHHHHhcCCCCcccccCchhhhhcccccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchh
Q psy10958 143 EILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNE 222 (321)
Q Consensus 143 ~v~~LaG~d~vTipp~~l~~l~~~~~~v~~~l~~~~~~~~~~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~ 222 (321)
||..++|||++|+||+++++|.+++.+- ..++.. +. +. .+++.++++++.+.++++|+.+|+++|+++|.
T Consensus 212 ~v~~l~G~d~vTip~~~l~~l~~~~~~~-~~l~~~--~~---~~--~~~~~~~~~~~~~~~~~~l~~~gl~~f~~~~~-- 281 (287)
T PF00923_consen 212 QVLALAGADIVTIPPKVLEALLEHPLTE-ETLDKE--EA---EA--VLEALFELGIDLDPVAEELLAEGLEKFADDWD-- 281 (287)
T ss_dssp HHHHTTTSSEEEEEHHHHHHHHHHHHHH-HHHCTC--HH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHCCCeEECCHHHHHHHHhCCChH-hhhchh--hh---hh--hhHHHHHhCCChhHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999976542 334331 11 11 35677899999999999999999999999997
Q ss_pred chhhh
Q psy10958 223 KLTKT 227 (321)
Q Consensus 223 KLl~~ 227 (321)
+|+..
T Consensus 282 ~l~~~ 286 (287)
T PF00923_consen 282 KLLAS 286 (287)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 47654
No 9
>PRK03343 transaldolase; Validated
Probab=100.00 E-value=3.6e-47 Score=369.61 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=185.6
Q ss_pred cHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCcee
Q psy10958 2 DKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHC 81 (321)
Q Consensus 2 d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~v 81 (321)
|.+...| ++.++++|+||+||||++++|+++|+++|++|+++ ++++|++||||+||+|++|+++|+++ ||+|
T Consensus 90 D~L~p~~--e~~~g~~G~VS~EVdp~la~d~e~~i~eA~~L~~~-----~~~~nv~IKIPaT~~Gi~Ai~~L~~~-GI~v 161 (368)
T PRK03343 90 DVLRPVY--EATGGVDGRVSIEVSPRLAHDTEATIAEARRLWAA-----VDRPNLMIKIPATPEGLPAIEALIAE-GISV 161 (368)
T ss_pred HHHHHHH--HHhCCCCCeEEEEeccccccCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCHHHHHHHHHHHHC-CCce
Confidence 5566666 77788999999999999999999999999999998 78899999999999999999999998 9999
Q ss_pred eeeeccCHHHHHHHHHh-----------cC------ceeecC-C--------------------CCCCCchHHHHHHHHH
Q psy10958 82 NLTLLFAFAQAVACAEA-----------GV------TLISPY-A--------------------PTEDPGVVSVTKIYNY 123 (321)
Q Consensus 82 n~TlvFS~~Qa~aaa~A-----------ga------~~iSpf-~--------------------~~~d~Gi~~v~~i~~~ 123 (321)
|+|+|||+.||.+|++| |. +++||| + ..+++||.+++.+|++
T Consensus 162 n~TliFS~~Qa~a~~eA~~~Gl~~~~~~G~~~~~~~sviS~FVsRiD~~~d~~l~~~~~~~~~~l~g~~gVa~ak~~Y~~ 241 (368)
T PRK03343 162 NVTLIFSVERYRAVADAYLRGLEKRLAAGHDLSKIHSVASFFVSRVDTEVDKRLEAIGTDEALALRGKAAIANARLAYQA 241 (368)
T ss_pred eEeeecCHHHHHHHHHHHHHHHHHHHHcCCCcccCCeEEEeehhhhHhhhhhhhhhcCcchhhhhcCCHHHHHHHHHHHH
Confidence 99999999999999999 65 799999 1 1347899999999999
Q ss_pred HHhcC----C----------------ceEEeecccCCHhHHHHHhCCCeE-EeCHHHHHHHhcCCCCcccccCchhhhhc
Q psy10958 124 YKKFG----Y----------------KTVVMGASFRNTGEILALAGCDLM-TIGPKLLEELENSTTPVDQMLSEKSAKKA 182 (321)
Q Consensus 124 ~~~~~----~----------------~T~vl~AS~r~~~~v~~LaG~d~v-Tipp~~l~~l~~~~~~v~~~l~~~~~~~~ 182 (321)
|++++ | +|.++++|||++.||.+|+|||+| |+||++|++|.+ ++.+.++|+.+...+.
T Consensus 242 ~~~~~~~~~~~~l~~~ga~~qr~LwAsT~vk~~~~~~~~yV~~L~G~dtvnT~p~~tl~a~~~-~g~~~~~l~~~~~~a~ 320 (368)
T PRK03343 242 YEEVFASPRWAALAAAGARPQRPLWASTGTKNPAYSDTLYVDELVAPDTVNTMPEATLDAFAD-HGEVADTLTGDYEEAQ 320 (368)
T ss_pred HHHhcCcchhHHHHhcCCcccccceeccccCCCccCccccHHHccCCCccCCCCHHHHHHHHh-cCCccccCCCchhhHH
Confidence 99986 4 455555567999999999999999 999999999997 5566688887665543
Q ss_pred c-cccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchhchhhhhhhhc
Q psy10958 183 N-LDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEKLTKTFSAKK 232 (321)
Q Consensus 183 ~-~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~KLl~~laaka 232 (321)
. +. +-. +|++|+|.|+.+|++|||++|++++. +|+..+..|.
T Consensus 321 ~~l~-----~l~-~~gid~d~~~~~ll~eGi~~F~~~~~--~Ll~~l~~k~ 363 (368)
T PRK03343 321 AVLA-----ALA-ALGIDLDDVTAVLEEEGVDKFEASWN--ELLASLEAKL 363 (368)
T ss_pred HHHH-----HHH-HcCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 2 33 333 89999999999999999999999997 4888876543
No 10
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-46 Score=344.10 Aligned_cols=178 Identities=49% Similarity=0.771 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceee
Q psy10958 3 KLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCN 82 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn 82 (321)
+..++++.+|++.+||+| .+++|++++|+|+|+++|++|++++ ++.||+||||+||+||+|++.|+++ ||+||
T Consensus 47 ~~~~~~~~ei~~~v~G~v-~e~~~~ls~d~e~mi~eA~~L~~~~-----~~~~i~IKIP~T~eGl~Ai~~L~~e-GI~~N 119 (239)
T COG0176 47 RDAVEFGKEILKIVPGRV-TEVDEVLSFDAEAMIEEARRLAKLI-----DNVGIVIKIPATWEGLKAIKALEAE-GIKTN 119 (239)
T ss_pred ccHHHHHHHHHhcCCCCC-eEeeeeecccHHHHHHHHHHHHHhc-----CcCCeEEEeCCCHHHHHHHHHHHHC-CCeee
Confidence 457899999999999999 9999999999999999999999995 4677899999999999999999998 99999
Q ss_pred eeeccCHHHHHHHHHhcCceeecC-CCCCC------CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHHhCCCeEEe
Q psy10958 83 LTLLFAFAQAVACAEAGVTLISPY-APTED------PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTI 155 (321)
Q Consensus 83 ~TlvFS~~Qa~aaa~Aga~~iSpf-~~~~d------~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~LaG~d~vTi 155 (321)
+|||||+.||++|++||++|+||| +|+.| .|+..++++|++|+.++++|.++++|+++..++.+|+|||.+|+
T Consensus 120 vTLiFS~~QAl~aa~aga~~iSpFvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas~~~~~~~~~~~l~G~d~~Ti 199 (239)
T COG0176 120 VTLIFSAAQALLAAEAGATYISPFVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVASARFPNHVYIAALAGADVLTI 199 (239)
T ss_pred EEEEecHHHHHHHHHhCCeEEEeecchHHhhccCchHHHHHHHHHHHHhccccceEEEecCccHHHHHHHHHhCCCcccC
Confidence 999999999999999999999999 77554 46788888888888887666666666666666777999999999
Q ss_pred CHHHHHHHhcCCCCcccccCchhhhhcccccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccc
Q psy10958 156 GPKLLEELENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSR 220 (321)
Q Consensus 156 pp~~l~~l~~~~~~v~~~l~~~~~~~~~~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v 220 (321)
||+++++|.+|++ .|+.+|+.|||++|.+||.
T Consensus 200 p~~~l~~l~~~~~---------------------------------~~~~~l~~eGI~~F~~D~~ 231 (239)
T COG0176 200 PPDLLKQLLKHGG---------------------------------AMAVPLLDEGIRKFAKDWE 231 (239)
T ss_pred CHHHHHHHHhccc---------------------------------ccccHHHHHHHHHHHHHHH
Confidence 9999999999755 3777788888888888876
No 11
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=100.00 E-value=2.7e-45 Score=353.35 Aligned_cols=205 Identities=25% Similarity=0.316 Sum_probs=179.7
Q ss_pred cHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCcee
Q psy10958 2 DKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHC 81 (321)
Q Consensus 2 d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~v 81 (321)
|++.+.+. +.++++|+||+||||++++|+++|+++|++|+++ ++++|++||||+||+||+|+++|+++ ||+|
T Consensus 77 d~l~p~~~--~~~g~~G~Vs~EVdP~la~d~~~~i~~A~~L~~~-----i~~~nv~IKIPaT~~Gi~Ai~~L~~~-GI~v 148 (338)
T cd00955 77 DLLAPVYE--QTGGNDGYVSLEVSPRLADDTQGTIAEAKRLWKA-----VGRPNLMIKIPATEAGLPAIEELIAA-GISV 148 (338)
T ss_pred HHHHHHHh--hcCCCCCeEEEEecccccCCHHHHHHHHHHHHHh-----cCCCcEEEEeCCCHHHHHHHHHHHHC-CCce
Confidence 55556663 6778999999999999999999999999999987 67899999999999999999999998 9999
Q ss_pred eeeeccCHHHHHHHHHhcC-----------------ceeecC-CC-----------------CCCCchHHHHHHHHHHHh
Q psy10958 82 NLTLLFAFAQAVACAEAGV-----------------TLISPY-AP-----------------TEDPGVVSVTKIYNYYKK 126 (321)
Q Consensus 82 n~TlvFS~~Qa~aaa~Aga-----------------~~iSpf-~~-----------------~~d~Gi~~v~~i~~~~~~ 126 (321)
|+|+|||+.||.+|++|+. +++||| +| .+++||++++.+|++|++
T Consensus 149 n~TliFs~~Qa~~aa~A~~~Gl~~~~~~g~~~~~~~sv~S~FVsRiD~~~d~~l~~~~~~~~~g~~gIa~ak~~Y~~~~~ 228 (338)
T cd00955 149 NVTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQVASVASFFVSRVDTLIDKKLDAPEAKALQGKVAIANAKLAYQEYQE 228 (338)
T ss_pred eEeeecCHHHHHHHHHHHHhhHHHHHhcCCCcccCceEEEEecchhhHhhhcccccccccccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999955 799999 11 257899999999999999
Q ss_pred cCC--------------------ceEEeecccCCHhHHHHHhCCCeE-EeCHHHHHHHhcCCCCcccccCchhhhhcccc
Q psy10958 127 FGY--------------------KTVVMGASFRNTGEILALAGCDLM-TIGPKLLEELENSTTPVDQMLSEKSAKKANLD 185 (321)
Q Consensus 127 ~~~--------------------~T~vl~AS~r~~~~v~~LaG~d~v-Tipp~~l~~l~~~~~~v~~~l~~~~~~~~~~~ 185 (321)
+++ +|.++++|+|++.||.+|+|||+| |+|+.+++++.+ ++++.++|+....++..
T Consensus 229 ~~~~~~~~~l~~~ga~~qr~LwASTgvk~~~~~~~~yV~~LiG~dtvnt~P~~t~~a~~~-~g~~~~~l~~~~~~a~~-- 305 (338)
T cd00955 229 KFSGPRWAALAAAGAKPQRLLWASTGVKNPAYPDVLYVEELIGPDTVNTMPDATLKAFAD-HGEVRPTLEEGLEEAER-- 305 (338)
T ss_pred HCCchhhHHHHhcCCcccccceecccccCCccCCcccHHhccCCCcccCCHHHHHHHHHh-cCCccccCCCchhhHHH--
Confidence 986 466666667899999999999999 999999999888 56677888876655432
Q ss_pred cccCChHHHHHhcCcCcchHHHHHHHHhhhhcccc
Q psy10958 186 KITLDESAFRWELNEDPMATEKLSDGIRKFAVDSR 220 (321)
Q Consensus 186 ~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v 220 (321)
..+..|++++|+|.|+.+|++|||++|+++|.
T Consensus 306 ---~~~~l~~~gid~d~v~~~L~~eGi~~F~~af~ 337 (338)
T cd00955 306 ---VLAELERLGIDLDAVTEKLLKEGVKKFKDSFE 337 (338)
T ss_pred ---hhHHHHHhCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 24677899999999999999999999999885
No 12
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=100.00 E-value=1.8e-43 Score=330.00 Aligned_cols=156 Identities=37% Similarity=0.449 Sum_probs=147.4
Q ss_pred cHHHHHHHHHHhccC--CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCc
Q psy10958 2 DKLVILFGTEILNII--PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGI 79 (321)
Q Consensus 2 d~~~v~~~~~i~~~~--~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI 79 (321)
|+..++++++|++.+ +|+||+||+|++++|+++|+++|++|++++ +++|++||||+||+|++|+++|+++ ||
T Consensus 67 ~~~~~~~~~~i~~~~~~~G~Vs~ev~~~~~~d~~~mi~~A~~l~~~~-----~~~nv~IKIPaT~~Gl~A~~~L~~~-GI 140 (252)
T cd00439 67 IQDACKLFEPIYDQTEADGRVSVEVSARLADDTQGMVEAAKYLSKVV-----NRRNIYIKIPATAEGIPAIKDLIAA-GI 140 (252)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEeccccCCHHHHHHHHHHHHHhc-----CcccEEEEeCCCHHHHHHHHHHHHC-CC
Confidence 457889999999998 899999999999999999999999999984 4689999999999999999999998 99
Q ss_pred eeeeeeccCHHHHHHHHHhcCceeecC-CCC----------------CCCchHHHHHHHHHHHhcCCceEEeecccCCHh
Q psy10958 80 HCNLTLLFAFAQAVACAEAGVTLISPY-APT----------------EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTG 142 (321)
Q Consensus 80 ~vn~TlvFS~~Qa~aaa~Aga~~iSpf-~~~----------------~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~ 142 (321)
+||+|+|||+.||.+|++||++||||| +|+ +++|++.++++|++|++++++|++|||||||+.
T Consensus 141 ~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~AS~r~~~ 220 (252)
T cd00439 141 SVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWASFSDTL 220 (252)
T ss_pred ceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEEEeeCCHH
Confidence 999999999999999999999999999 332 239999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEeCHHHHHHH
Q psy10958 143 EILALAGCDLMTIGPKLLEEL 163 (321)
Q Consensus 143 ~v~~LaG~d~vTipp~~l~~l 163 (321)
||.+++|||++|+||+++.+|
T Consensus 221 ~v~~l~G~d~vT~~p~v~~~l 241 (252)
T cd00439 221 YVAPLIGCDTVTTMPDQALEA 241 (252)
T ss_pred HHHHhhCCCeeecCHHHHHHH
Confidence 999999999999999999998
No 13
>PRK03903 transaldolase; Provisional
Probab=100.00 E-value=1.7e-43 Score=332.12 Aligned_cols=198 Identities=24% Similarity=0.342 Sum_probs=164.4
Q ss_pred cCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHH
Q psy10958 15 IIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVA 94 (321)
Q Consensus 15 ~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~a 94 (321)
+.+|+||+||||++++|+++|+++|++|++. +++||++||||+||+|++|+++|.++ ||+||+|+|||+.||.+
T Consensus 40 g~~G~VS~EV~P~la~d~~~~i~ea~~L~~~-----~~~~nv~IKIPaT~~Gl~Ai~~L~~~-GI~vn~TliFS~~Qa~~ 113 (274)
T PRK03903 40 PDDGFISIEIDPFLEDDAAGSIEEGKRLYKT-----IGRPNVMIKVPATKAGYEAMSALMKK-GISVNATLIFSPEQAKE 113 (274)
T ss_pred CCCCeEEEEEccccccCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCHHHHHHHHHHHHC-CCcEEEeeecCHHHHHH
Confidence 6789999999999999999999999999986 67899999999999999999999998 99999999999999999
Q ss_pred HHHh---cCc--------eeecC-CCCC--------------CCchHHHHHHHHHHHhcC-CceEEeecc--cCC----H
Q psy10958 95 CAEA---GVT--------LISPY-APTE--------------DPGVVSVTKIYNYYKKFG-YKTVVMGAS--FRN----T 141 (321)
Q Consensus 95 aa~A---ga~--------~iSpf-~~~~--------------d~Gi~~v~~i~~~~~~~~-~~T~vl~AS--~r~----~ 141 (321)
|++| |+. |+||| +|++ +.|+++++++|++|+++| .+|++|||| ||| .
T Consensus 114 ~a~A~~~Ga~~~~~~~~sviS~fVgRiD~~~d~~l~~~~l~~~~gIa~a~~~y~~~~~~g~~~~riL~AStg~Kn~~~~~ 193 (274)
T PRK03903 114 CAEALNEGLKKNTKDPKAVISVFVSRFDRLLDPKLAPKNLQAKSGIMNATKCYNQIEQHANKNIRTLFASTGVKGDDLPK 193 (274)
T ss_pred HHHHHHcCcccccccCCceeeeecchHhhhcccccccccccccHHHHHHHHHHHHHHHcCCCCcEEEEEecccCCCCCCh
Confidence 8887 974 59999 5542 249999999999999995 579999999 698 5
Q ss_pred hHHH-HHh-CCCeEEeCHHHHHHHhcCCCCcccccCchhhhhcc-cccccCChHHHHHhcCcCcchHHHHHHHHhhhhcc
Q psy10958 142 GEIL-ALA-GCDLMTIGPKLLEELENSTTPVDQMLSEKSAKKAN-LDKITLDESAFRWELNEDPMATEKLSDGIRKFAVD 218 (321)
Q Consensus 142 ~~v~-~La-G~d~vTipp~~l~~l~~~~~~v~~~l~~~~~~~~~-~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d 218 (321)
.++. .|. |.++.|+||+++++|.+|+. +..++......... ++.+. ..++|++.++.+|+.||+++|.++
T Consensus 194 ~~yv~~L~~g~~v~T~P~~tl~a~~~hg~-~~~~~~~~~~~~~~f~~~~~------~~gid~~~v~~~L~~eg~~~F~~a 266 (274)
T PRK03903 194 DYYIKELLFKNSINTAPLDTIEAFLKDGN-TEPKKPLKIEEIEAFFKELK------SHNIDLENTYQKLLKDGLEAFKQA 266 (274)
T ss_pred HHHHHHHhCCCCeeeCCHHHHHHHHhcCC-ccCCCCCCHHHHHHHHHHHH------HcCCCHHHHHHHHHHHHHHHHHHH
Confidence 5555 455 55666999999999999644 45555443333222 23232 477899999999999999999999
Q ss_pred cchhchhhh
Q psy10958 219 SRNEKLTKT 227 (321)
Q Consensus 219 ~v~~KLl~~ 227 (321)
|.. |+..
T Consensus 267 f~~--ll~~ 273 (274)
T PRK03903 267 FED--ILKS 273 (274)
T ss_pred HHH--HHhh
Confidence 974 6653
No 14
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=100.00 E-value=3e-41 Score=307.90 Aligned_cols=153 Identities=31% Similarity=0.494 Sum_probs=143.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
..++.++|++.++|+||+|| ++.|+++|+++|++|.++ .+|++||||+||+|++|+++|+++ ||+||+|
T Consensus 39 ~~~~~~~i~~~~~g~vs~qv---~~~~~~~mi~~a~~l~~~-------~~~i~iKIP~T~~Gl~A~~~L~~~-Gi~v~~T 107 (213)
T TIGR00875 39 FWEVLKEIQEAVEGPVSAET---ISLDAEGMVEEAKELAKL-------APNIVVKIPMTSEGLKAVKILKKE-GIKTNVT 107 (213)
T ss_pred HHHHHHHHHHhcCCcEEEEE---eeCCHHHHHHHHHHHHHh-------CCCeEEEeCCCHHHHHHHHHHHHC-CCceeEE
Confidence 34788999999999999999 789999999999999998 379999999999999999999998 9999999
Q ss_pred eccCHHHHHHHHHhcCceeecC-CCC---CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 85 LLFAFAQAVACAEAGVTLISPY-APT---EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga~~iSpf-~~~---~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~ 158 (321)
+|||+.||++|++|||+||||| +|+ +++|+..+++++++|+.+|++|+||+|||||++||.+ ++|||++|+||+
T Consensus 108 ~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~ 187 (213)
T TIGR00875 108 LVFSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLD 187 (213)
T ss_pred EecCHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHH
Confidence 9999999999999999999999 665 4599999999999999999999999999999999997 799999999999
Q ss_pred HHHHHhcCCC
Q psy10958 159 LLEELENSTT 168 (321)
Q Consensus 159 ~l~~l~~~~~ 168 (321)
++++|.+++.
T Consensus 188 vl~~l~~~p~ 197 (213)
T TIGR00875 188 VMQQLFNHPL 197 (213)
T ss_pred HHHHHHcCCc
Confidence 9999988643
No 15
>PRK01362 putative translaldolase; Provisional
Probab=100.00 E-value=8.4e-41 Score=305.05 Aligned_cols=153 Identities=33% Similarity=0.533 Sum_probs=143.7
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
..++.++|++.++|+||+|| +++|+++|+++|++|.++ .+|++||||+|++|++|+++|+++ ||+||+|
T Consensus 39 ~~~~~~~i~~~i~g~vs~qv---~~~d~~~m~~~a~~l~~~-------~~~i~iKIP~T~~G~~a~~~L~~~-Gi~v~~T 107 (214)
T PRK01362 39 FEEVIKEICSIVDGPVSAEV---IALDAEGMIKEGRELAKI-------APNVVVKIPMTPEGLKAVKALSKE-GIKTNVT 107 (214)
T ss_pred HHHHHHHHHHhcCCCEEEEE---eeCCHHHHHHHHHHHHHh-------CCCEEEEeCCCHHHHHHHHHHHHC-CCceEEe
Confidence 35788999999999999999 479999999999999998 379999999999999999999998 9999999
Q ss_pred eccCHHHHHHHHHhcCceeecC-CCC---CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 85 LLFAFAQAVACAEAGVTLISPY-APT---EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga~~iSpf-~~~---~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~ 158 (321)
+|||+.|+++|++|||+||||| +|+ +++|+..+++++++|++++++|+||+|||||++||.+ ++|||++|+||+
T Consensus 108 ~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~ 187 (214)
T PRK01362 108 LIFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYK 187 (214)
T ss_pred eecCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHH
Confidence 9999999999999999999999 665 4589999999999999999999999999999999998 689999999999
Q ss_pred HHHHHhcCCC
Q psy10958 159 LLEELENSTT 168 (321)
Q Consensus 159 ~l~~l~~~~~ 168 (321)
++++|.+++.
T Consensus 188 vl~~l~~~p~ 197 (214)
T PRK01362 188 VIKQLFKHPL 197 (214)
T ss_pred HHHHHHcCCc
Confidence 9999998743
No 16
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=6.1e-40 Score=300.63 Aligned_cols=154 Identities=21% Similarity=0.346 Sum_probs=142.7
Q ss_pred HHHHHHHHhccCC--CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceee
Q psy10958 5 VILFGTEILNIIP--GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCN 82 (321)
Q Consensus 5 ~v~~~~~i~~~~~--G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn 82 (321)
...+.++|++.++ ++||+|| +++|+++|+++|++|++.+ ++|++||||+|++|++||++|+++ ||+||
T Consensus 40 ~~~~~~~i~~~i~~~~~vs~ev---~~~~~~~mi~eA~~l~~~~------~~nv~VKIP~T~~Gl~Ai~~L~~~-Gi~vn 109 (222)
T PRK12656 40 FFERIREVREIIGDEASIHVQV---VAQDYEGILKDAHEIRRQC------GDDVYIKVPVTPAGLAAIKTLKAE-GYHIT 109 (222)
T ss_pred HHHHHHHHHHHhCCCCcEEEEE---EECCHHHHHHHHHHHHHHh------CCCEEEEeCCCHHHHHHHHHHHHC-CCceE
Confidence 3478899999885 5899999 8999999999999999753 489999999999999999999998 99999
Q ss_pred eeeccCHHHHHHHHHhcCceeecC-CCCCC---CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeC
Q psy10958 83 LTLLFAFAQAVACAEAGVTLISPY-APTED---PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG 156 (321)
Q Consensus 83 ~TlvFS~~Qa~aaa~Aga~~iSpf-~~~~d---~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTip 156 (321)
+|+|||+.||++|++|||+||||| +|+++ +|...++++.+.|+.++++|+||||||||+.||.+ ++|||++|+|
T Consensus 110 ~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp 189 (222)
T PRK12656 110 ATAIYTVFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAG 189 (222)
T ss_pred EeeeCCHHHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecC
Confidence 999999999999999999999999 77655 78899999999999999999999999999999998 5899999999
Q ss_pred HHHHHHHhcCCC
Q psy10958 157 PKLLEELENSTT 168 (321)
Q Consensus 157 p~~l~~l~~~~~ 168 (321)
|+++++|.+|+.
T Consensus 190 ~~vl~~l~~~p~ 201 (222)
T PRK12656 190 PDVFEAAFAMPS 201 (222)
T ss_pred HHHHHHHhcCCc
Confidence 999999998753
No 17
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=8.3e-40 Score=299.56 Aligned_cols=151 Identities=25% Similarity=0.389 Sum_probs=140.9
Q ss_pred HHHHHHhccC--CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 7 LFGTEILNII--PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 7 ~~~~~i~~~~--~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
++.++|++.+ .|+||+|| ++.|+++|+++|++|.++ .+|++||||+||+|++||++|+++ ||+||+|
T Consensus 41 ~~~~~i~~~~~~~~~v~~qv---~~~d~e~mi~eA~~l~~~-------~~nv~IKIP~T~~Gl~Ai~~L~~~-GI~vn~T 109 (220)
T PRK12655 41 EVLPRLQKAIGGEGILFAQT---MSRDAQGMVEEAKRLRNA-------IPGIVVKIPVTAEGLAAIKKLKKE-GIPTLGT 109 (220)
T ss_pred HHHHHHHHHhCCCCCEEEEE---eeCCHHHHHHHHHHHHHh-------CCCEEEEeCCCHHHHHHHHHHHHC-CCceeEe
Confidence 5568888877 58999999 889999999999999998 379999999999999999999998 9999999
Q ss_pred eccCHHHHHHHHHhcCceeecC-CCCC---CCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 85 LLFAFAQAVACAEAGVTLISPY-APTE---DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga~~iSpf-~~~~---d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~ 158 (321)
+|||+.||++|++|||+||||| +|++ .+|+..+++++++|+.++++|+||||||||+.||.+ ++|||++|+||+
T Consensus 110 ~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~ 189 (220)
T PRK12655 110 AVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLPLD 189 (220)
T ss_pred EecCHHHHHHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCHH
Confidence 9999999999999999999999 6654 489999999999999999999999999999999998 789999999999
Q ss_pred HHHHHhcCCC
Q psy10958 159 LLEELENSTT 168 (321)
Q Consensus 159 ~l~~l~~~~~ 168 (321)
++++|.+|+.
T Consensus 190 vl~~l~~~p~ 199 (220)
T PRK12655 190 VAQQMLNTPA 199 (220)
T ss_pred HHHHHHcCCC
Confidence 9999998743
No 18
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=2.8e-39 Score=296.14 Aligned_cols=150 Identities=25% Similarity=0.416 Sum_probs=140.2
Q ss_pred HHHHHHhccCC--CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 7 LFGTEILNIIP--GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 7 ~~~~~i~~~~~--G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
++.++|++.++ |+||+|| +++|+++|+++|++|.++ .+|++||||+||+|++||+.|+++ ||+||+|
T Consensus 41 ~~~~~i~~~~~~~~~v~~Qv---~~~d~e~mi~ea~~l~~~-------~~ni~IKIP~T~~Gl~A~~~L~~~-GI~vn~T 109 (220)
T PRK12653 41 VVLPQLHEAMGGQGRLFAQV---MATTAEGMVNDARKLRSI-------IADIVVKVPVTAEGLAAIKMLKAE-GIPTLGT 109 (220)
T ss_pred HHHHHHHHHhCCCCcEEEEE---ecCCHHHHHHHHHHHHHh-------CCCEEEEeCCCHHHHHHHHHHHHc-CCCeeEE
Confidence 45688888875 6999999 789999999999999998 379999999999999999999998 9999999
Q ss_pred eccCHHHHHHHHHhcCceeecC-CCC---CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 85 LLFAFAQAVACAEAGVTLISPY-APT---EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga~~iSpf-~~~---~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~ 158 (321)
+|||+.||++|++|||+||||| +|+ +.+|+..+++++++|+.++++|+||+|||||++||.+ ++|||++|+||+
T Consensus 110 ~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~ 189 (220)
T PRK12653 110 AVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLD 189 (220)
T ss_pred EecCHHHHHHHHhcCCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCHH
Confidence 9999999999999999999999 665 5589999999999999999999999999999999998 799999999999
Q ss_pred HHHHHhcCC
Q psy10958 159 LLEELENST 167 (321)
Q Consensus 159 ~l~~l~~~~ 167 (321)
++++|.+|+
T Consensus 190 vl~~l~~~p 198 (220)
T PRK12653 190 VAQQMISYP 198 (220)
T ss_pred HHHHHHcCC
Confidence 999999875
No 19
>TIGR00876 tal_mycobact transaldolase, mycobacterial type. This model describes one of three related but easily separable famiiles of known and putative transaldolases. This family and the family typified by E. coli TalA and TalB both contain experimentally verified examples.
Probab=100.00 E-value=1.1e-39 Score=314.36 Aligned_cols=209 Identities=22% Similarity=0.268 Sum_probs=175.7
Q ss_pred cHHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCcee
Q psy10958 2 DKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHC 81 (321)
Q Consensus 2 d~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~v 81 (321)
|.+...| ++.++++|+||+||||++++|+++|+++|++|+++ ++++|++||||+||+||+|+++|+++ ||+|
T Consensus 80 D~L~p~~--e~~~g~~G~VS~EVdP~la~d~e~~i~eA~~L~~~-----~~~~nv~IKIPaT~~Gi~Ai~~L~~~-GI~v 151 (350)
T TIGR00876 80 DALMPLW--EDSDGNDGRISIEIDPFLADDAAKSIDEAIELFKI-----LDRPNLFIKIPASEAGIEAISALLAA-GIPV 151 (350)
T ss_pred HHHHHHH--HHhCCCCCcEEEEEccccccCHHHHHHHHHHHHHh-----hCCCCEEEEeCCCHHHHHHHHHHHHC-CCce
Confidence 5566666 67788999999999999999999999999999998 67899999999999999999999998 9999
Q ss_pred eeeeccCHHHHHHHHHhcC-----------------ceeecC-CC--------------------CCCCchHHHHHHHHH
Q psy10958 82 NLTLLFAFAQAVACAEAGV-----------------TLISPY-AP--------------------TEDPGVVSVTKIYNY 123 (321)
Q Consensus 82 n~TlvFS~~Qa~aaa~Aga-----------------~~iSpf-~~--------------------~~d~Gi~~v~~i~~~ 123 (321)
|+|+|||+.|+.+|++|+. +++|+| +| .+.-||++++.+|+.
T Consensus 152 NvTliFS~~q~~~v~eA~~~Gl~~~~~~G~~~~~v~sVaS~FvsRvD~~vD~~l~~~~~~~a~~l~g~~gIanA~l~y~~ 231 (350)
T TIGR00876 152 NVTLIFSPKIAGEIADALAKEAEKARQAGHSLSKIHAVASFFVSRFDKEIDKLLDKIGSRQALELQAQAGIANARLAYAT 231 (350)
T ss_pred eEEEeecHHHHHHHHHHHHHHHHHHHHcCCCcccCceEEEEeeehhhhhhhhhhhhccchhHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999999942 599999 21 134678999999988
Q ss_pred HHhcC--------------CceEEeeccc-------CCHhHHHHHhCCCeE-EeCHHHHHHHhcCCCCcccccCchhhhh
Q psy10958 124 YKKFG--------------YKTVVMGASF-------RNTGEILALAGCDLM-TIGPKLLEELENSTTPVDQMLSEKSAKK 181 (321)
Q Consensus 124 ~~~~~--------------~~T~vl~AS~-------r~~~~v~~LaG~d~v-Tipp~~l~~l~~~~~~v~~~l~~~~~~~ 181 (321)
|++.- .+.+.||||+ +++.||.+|+|+++| |+|+++++++.+|+.....+++...+++
T Consensus 232 ~~e~~~~~~~~~~L~~~ga~~qR~LwASTgvK~p~~~d~~YV~~Ligp~tVnT~P~~Tl~Af~dhg~~~~~~l~~~~~~a 311 (350)
T TIGR00876 232 YREVFEDSDCYRQIKQDAAKLQRPLFASTGVKNNDLADDLYIKALCAKHSINTAPEEAIDAVADDGNIECDTPLGTASDA 311 (350)
T ss_pred HHHHhccCHHHHHHHHCCCCCCceeeecCCCCCCcccccccHHHhcCCCccccCCHHHHHHHHHcCCcCCCCCCCcHHHH
Confidence 87742 1369999995 566799999999999 9999999999996554445576665444
Q ss_pred cc-cccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchhchhh
Q psy10958 182 AN-LDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEKLTK 226 (321)
Q Consensus 182 ~~-~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~KLl~ 226 (321)
.. +..+. ..++|++.++.+|+.||+++|.++|.. |+.
T Consensus 312 ~~~l~~l~------~~GId~~~v~~~L~~eGv~~F~~a~~~--LL~ 349 (350)
T TIGR00876 312 EAFFDELG------AHGIDLEDTAAKLEEEGLIAFEASFEE--LLQ 349 (350)
T ss_pred HHHHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHHHH--Hhh
Confidence 33 55554 579999999999999999999999974 653
No 20
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=100.00 E-value=1.9e-37 Score=330.10 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=178.7
Q ss_pred HHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCHH
Q psy10958 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFA 90 (321)
Q Consensus 11 ~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~ 90 (321)
+..++.+|+||+||||++++|+++|+++|++|++. ++++|++||||+||+||+||++|+++ ||+||+|+|||++
T Consensus 97 ~~~~g~~G~VS~EV~P~la~d~e~~i~eA~~L~~~-----v~~~nv~IKIPaT~~Gl~Ai~~L~~~-GI~vn~TliFS~~ 170 (948)
T PRK09533 97 DATDGADGFVSLEVSPYLALDTEGTIAEARRLWAA-----VDRPNLMIKVPATPEGLPAIRQLIAE-GINVNVTLLFSQD 170 (948)
T ss_pred HhcCCCCCeEEEEEecccccCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCHHHHHHHHHHHHC-CCeeeEEEEecHH
Confidence 45567889999999999999999999999999987 77899999999999999999999998 9999999999999
Q ss_pred HHHHHHHh-----------c------CceeecC-CC-----------C-----------------CCCchHHHHHHHHHH
Q psy10958 91 QAVACAEA-----------G------VTLISPY-AP-----------T-----------------EDPGVVSVTKIYNYY 124 (321)
Q Consensus 91 Qa~aaa~A-----------g------a~~iSpf-~~-----------~-----------------~d~Gi~~v~~i~~~~ 124 (321)
||.+|++| | ++|+||| +| . ++.||++++.+|+.|
T Consensus 171 q~~~~~~A~~~gle~~~~aG~d~~~i~sv~S~fvsRiD~~~d~~l~~~~~~~~dp~~~~~~~~l~gk~~ianAk~ay~~~ 250 (948)
T PRK09533 171 VYEEVAEAYISGLEARAAKGGDPSHVASVASFFVSRIDSAVDKRLDEKIAAANDPAEKAALEALKGKVAIANAKLAYQRY 250 (948)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCceEEEEehhhHHHHHHhhhhhhccccCCcchhhhhhhhccHHHHHHHHHHHHHH
Confidence 99999988 6 6899999 11 1 235789999999998
Q ss_pred H------------hcCCc-eEEeecc-------cCCHhHHHHHhCCCeE-EeCHHHHHHHhcCCCCcccccCchhhhhcc
Q psy10958 125 K------------KFGYK-TVVMGAS-------FRNTGEILALAGCDLM-TIGPKLLEELENSTTPVDQMLSEKSAKKAN 183 (321)
Q Consensus 125 ~------------~~~~~-T~vl~AS-------~r~~~~v~~LaG~d~v-Tipp~~l~~l~~~~~~v~~~l~~~~~~~~~ 183 (321)
+ ..|.+ ++.|||| ++++.||.+|+|+++| |+|+++++++.+|+. +..+++.+..++..
T Consensus 251 ~~~~~~~rw~~l~~~ga~~qR~LwASTg~K~p~~~d~~Yv~~Lig~~tVnT~P~~tl~A~~~hg~-~~~~~~~~~~~a~~ 329 (948)
T PRK09533 251 KRLFAGPRWEALAAKGAKPQRLLWASTGTKNKAYSDVLYVEELIGPDTVNTMPPATLDAFRDHGK-VRATLEEDVDEARA 329 (948)
T ss_pred HHHhcchhHHHHHhCCCCcceeEEeecCCCCcccCCcccHHHhcCcCcccCCCHHHHHHHHhcCC-ccccCCCChHHHHH
Confidence 7 45666 8999999 6888899999999999 999999999999655 66777766665543
Q ss_pred -cccccCChHHHHHhcCcCcchHHHHHHHHhhhhcccchhchhhhhhhh
Q psy10958 184 -LDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEKLTKTFSAK 231 (321)
Q Consensus 184 -~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~v~~KLl~~laak 231 (321)
++.+. ..++|++.++.+|+.||+++|++++.. |+..++.|
T Consensus 330 ~l~~l~------~~gId~~~v~~~L~~eGv~~F~~a~~~--Ll~~~~~k 370 (948)
T PRK09533 330 VLADLA------EAGISLDAVTDKLVAEGVQLFADAFDK--LLGAVAEK 370 (948)
T ss_pred HHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 55554 678999999999999999999999974 88887644
No 21
>PRK12376 putative translaldolase; Provisional
Probab=100.00 E-value=7.2e-37 Score=282.54 Aligned_cols=149 Identities=25% Similarity=0.347 Sum_probs=137.5
Q ss_pred HHHHHHHHhccCC-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH----HHHHHHHHHHHhhCc
Q psy10958 5 VILFGTEILNIIP-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW----EGIQAAKVLESEYGI 79 (321)
Q Consensus 5 ~v~~~~~i~~~~~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~----eGi~A~~~L~~~~GI 79 (321)
+..+.++|++.++ |+||+|| ++.|+++|+++|++|.++ ++|++||||+|| +|++|+++|+++ ||
T Consensus 45 ~~~~~~~i~~~~~~~~vs~EV---~~~d~~~mv~eA~~l~~~-------~~nv~VKIP~T~~~G~~gl~Ai~~L~~~-GI 113 (236)
T PRK12376 45 YKAFAKEVLAEIPDAPISFEV---FADDLETMEKEAEKIASL-------GENVYVKIPITNTKGESTIPLIKKLSAD-GV 113 (236)
T ss_pred HHHHHHHHHHhcCCCcEEEEE---ecCCHHHHHHHHHHHHHh-------CCCeEEEECCcCccchhHHHHHHHHHHC-CC
Confidence 3468889999986 7999999 899999999999999998 589999999998 789999999998 99
Q ss_pred eeeeeeccCHHHHHHHHHh----cCceeecC-CCCCC---CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhC
Q psy10958 80 HCNLTLLFAFAQAVACAEA----GVTLISPY-APTED---PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAG 149 (321)
Q Consensus 80 ~vn~TlvFS~~Qa~aaa~A----ga~~iSpf-~~~~d---~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG 149 (321)
+||+|+|||+.||++|++| |++|+||| +|++| +|+..++++.++|+.+ ++|+||||||||+.||.+ ++|
T Consensus 114 ~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvgR~dd~g~D~~~~i~~i~~i~~~~-~~tkILaASiR~~~~v~~a~~~G 192 (236)
T PRK12376 114 KLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIADTGVDPVPLMKEALAICHSK-PGVELLWASPREVYNIIQADQLG 192 (236)
T ss_pred eEEEeeecCHHHHHHHHHHhcCCCCeEEEEecchhhhcCCCcHHHHHHHHHHHHhC-CCcEEEEEecCCHHHHHHHHHcC
Confidence 9999999999999977666 59999999 78755 8899999999999986 899999999999999998 689
Q ss_pred CCeEEeCHHHHHHHhc
Q psy10958 150 CDLMTIGPKLLEELEN 165 (321)
Q Consensus 150 ~d~vTipp~~l~~l~~ 165 (321)
||++|+||+++++|..
T Consensus 193 ad~vTvp~~v~~~l~~ 208 (236)
T PRK12376 193 CDIITVTPDVLKKLPL 208 (236)
T ss_pred CCEEEcCHHHHHHHHh
Confidence 9999999999999986
No 22
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=100.00 E-value=3.6e-36 Score=274.24 Aligned_cols=152 Identities=34% Similarity=0.557 Sum_probs=142.9
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
...+.++|++.++|+||+|| .++|+++|+++|++|.++ .+|++||||+|++|++|+++|+++ ||+||+|
T Consensus 39 ~~~~~~~i~~~~~~~v~~qv---~~~~~e~~i~~a~~l~~~-------~~~~~iKIP~T~~gl~ai~~L~~~-gi~v~~T 107 (211)
T cd00956 39 FEAVLKEICEIIDGPVSAQV---VSTDAEGMVAEARKLASL-------GGNVVVKIPVTEDGLKAIKKLSEE-GIKTNVT 107 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEE---EeCCHHHHHHHHHHHHHh-------CCCEEEEEcCcHhHHHHHHHHHHc-CCceeeE
Confidence 34678999999999999999 689999999999999997 369999999999999999999998 9999999
Q ss_pred eccCHHHHHHHHHhcCceeecC-CCC---CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 85 LLFAFAQAVACAEAGVTLISPY-APT---EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga~~iSpf-~~~---~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~ 158 (321)
+|||++||.+|++||++||||| +|+ +++|++.++++++++++++++|+||+||+||+.||.+ ++|||++|+||+
T Consensus 108 ~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~ 187 (211)
T cd00956 108 AIFSAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPD 187 (211)
T ss_pred EecCHHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHH
Confidence 9999999999999999999999 664 5599999999999999999999999999999999998 689999999999
Q ss_pred HHHHHhcCC
Q psy10958 159 LLEELENST 167 (321)
Q Consensus 159 ~l~~l~~~~ 167 (321)
++++|..++
T Consensus 188 vl~~l~~~~ 196 (211)
T cd00956 188 VLEQLLKHP 196 (211)
T ss_pred HHHHHhcCc
Confidence 999999973
No 23
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=100.00 E-value=5.1e-36 Score=276.59 Aligned_cols=149 Identities=22% Similarity=0.235 Sum_probs=135.7
Q ss_pred HHHHHHHHhc-cCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH-H---HHHHHHHHHhhCc
Q psy10958 5 VILFGTEILN-IIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE-G---IQAAKVLESEYGI 79 (321)
Q Consensus 5 ~v~~~~~i~~-~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e-G---i~A~~~L~~~~GI 79 (321)
...+.++|+. ..+|+||+|| ++.|+++|+++|++|.++ ++|++||||+|++ | ++|+++|.++ ||
T Consensus 45 ~~~~~~~i~~~~~~~~vs~EV---~~~d~~~m~~eA~~l~~~-------~~nv~VKIP~T~~~G~~~l~ai~~L~~~-GI 113 (236)
T TIGR02134 45 YEAFAHEALAQITDLPISFEV---FADDLDEMEKEARYIASW-------GNNVNVKIPVTNTKGESTGPLIQKLSAD-GI 113 (236)
T ss_pred HHHHHHHHHHHccCCcEEEEE---ecCCHHHHHHHHHHHHhc-------CCCeEEEECCcCcccchHHHHHHHHHHC-CC
Confidence 3467777754 4479999999 899999999999999987 5899999999997 7 9999999998 99
Q ss_pred eeeeeeccCHHHHHHHHH---hc-CceeecC-CCCCC---CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhC
Q psy10958 80 HCNLTLLFAFAQAVACAE---AG-VTLISPY-APTED---PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAG 149 (321)
Q Consensus 80 ~vn~TlvFS~~Qa~aaa~---Ag-a~~iSpf-~~~~d---~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG 149 (321)
+||+|+|||+.|+.+|++ +| ++|+||| +|++| +|+..+++++++|+.+ ++|+||||||||+.||.+ ++|
T Consensus 114 ~vn~T~vfs~~Qa~~aa~A~~aG~a~yispfvgR~dd~g~D~~~~i~~i~~i~~~~-~~tkILaAS~R~~~~v~~a~~~G 192 (236)
T TIGR02134 114 TLNVTALTTIEQVEKVCQSFTDGVPGIVSVFAGRIADTGVDPEPHMREALEIVAQK-PGVELLWASPRELFNIIQADRIG 192 (236)
T ss_pred cEEeehcCCHHHHHHHHHHHhCCCCeEEEEecchhhhcCCCcHHHHHHHHHHHHhC-CCcEEEEEccCCHHHHHHHHHcC
Confidence 999999999999999776 79 6999999 88765 8899999999999997 899999999999999998 589
Q ss_pred CCeEEeCHHHHHHHhc
Q psy10958 150 CDLMTIGPKLLEELEN 165 (321)
Q Consensus 150 ~d~vTipp~~l~~l~~ 165 (321)
||++|+||+++++|..
T Consensus 193 ad~vTvp~~v~~~l~~ 208 (236)
T TIGR02134 193 CDIITCAHDILAKLPL 208 (236)
T ss_pred CCEEECCHHHHHHHHh
Confidence 9999999999999975
No 24
>KOG2772|consensus
Probab=99.08 E-value=1.4e-10 Score=109.62 Aligned_cols=54 Identities=43% Similarity=0.559 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 268 VDSRKLETLLKELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 268 ~d~~~L~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
.+.+.....+.--=..+++-.+++..+|||++|+||.+|+|+||||||||||||
T Consensus 59 ~y~~~~~~aveygk~~~~~~~e~v~~aidr~~v~fg~dilk~vpGrVStEVdaR 112 (337)
T KOG2772|consen 59 AYAELFDTAVEYGKKHGSSYWEQVENAIDRACVLFGTDILKGVPGRVSTEVDAR 112 (337)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhChhhhhcCCCeeeeeeccc
Confidence 344444444443333468899999999999999999999999999999999998
No 25
>PRK12346 transaldolase A; Provisional
Probab=98.37 E-value=6.1e-07 Score=86.80 Aligned_cols=48 Identities=46% Similarity=0.564 Sum_probs=40.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 274 ETLLKELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 274 ~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
+..+..--+.+.+..+.+.+++|+|+|+||.||+++||||||+|||||
T Consensus 52 ~~ai~~~~~~~~~~~~~i~~a~D~l~v~~g~ei~~~v~G~Vs~EVdp~ 99 (316)
T PRK12346 52 DDAIAWGKKQGGTQEQQVVAACDKLAVNFGAEILKSVPGRVSTEVDAR 99 (316)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEccc
Confidence 444444445667888999999999999999999999999999999987
No 26
>PTZ00411 transaldolase-like protein; Provisional
Probab=98.32 E-value=1.8e-06 Score=84.18 Aligned_cols=36 Identities=61% Similarity=0.887 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 286 NIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 286 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
++.+++.+++|+|+|+||.+|+++||||||||||||
T Consensus 75 ~~~~~~~~a~d~l~v~~g~~i~~~i~G~VS~EVd~~ 110 (333)
T PTZ00411 75 EKEELVELVVDKLTVNFGVEILKIVPGRVSTEVDAR 110 (333)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccc
Confidence 778899999999999999999999999999999986
No 27
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=98.26 E-value=1.5e-06 Score=84.26 Aligned_cols=48 Identities=52% Similarity=0.673 Sum_probs=39.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 274 ETLLKELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 274 ~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
++++..--+.+++..+.+.+++|+|+|+||.+|++++|||||+|||||
T Consensus 51 ~~~~~~~~~~~~~~~~~i~~a~D~l~v~~g~~i~~~i~G~VS~EVdpr 98 (317)
T TIGR00874 51 DEAVAWGKKQGKDDAQQVENALDKLAVNFGLEILKIVPGRVSTEVDAR 98 (317)
T ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 333333334566778999999999999999999999999999999987
No 28
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=98.23 E-value=1.9e-06 Score=83.36 Aligned_cols=50 Identities=48% Similarity=0.656 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 272 KLETLLKELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 272 ~L~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
.+++++...-+.+.+..+.+.+++|++.|+||.+|++++|||||+|||||
T Consensus 49 ~i~~~~~~~~~~~~~~~~~~~~~~d~l~v~~~~~i~~~i~G~Vs~EVdp~ 98 (313)
T cd00957 49 LVDEAIAYAKKKGGSDEDQISNALDKLLVNFGTEILKLIPGRVSTEVDAR 98 (313)
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 34455554455677899999999999999999999999999999999986
No 29
>PRK05269 transaldolase B; Provisional
Probab=98.17 E-value=2.4e-06 Score=82.89 Aligned_cols=38 Identities=61% Similarity=0.892 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 284 KKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 284 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
+.+..+.+.+++|+|+|+||.||++++|||||+|||||
T Consensus 63 ~~~~~~~i~~a~d~l~v~~g~ei~~~i~G~Vs~EVdp~ 100 (318)
T PRK05269 63 SGDRAQQIDDAIDKLAVNFGLEILKLIPGRVSTEVDAR 100 (318)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 46778899999999999999999999999999999986
No 30
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.03 E-value=8.2e-06 Score=81.23 Aligned_cols=38 Identities=50% Similarity=0.832 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 284 KKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 284 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
+.++.+++.+++|+|+|+||.+|+++||||||+|||||
T Consensus 67 ~~~~~~~~~~a~d~l~v~~g~~i~~~i~G~Vs~EVdpr 104 (391)
T PRK12309 67 DAPVEDVVALAFDRLAVAFGLKILKIVPGRVSTEVDAR 104 (391)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 44778899999999999999999999999999999987
No 31
>PRK03343 transaldolase; Validated
Probab=97.43 E-value=0.00021 Score=70.73 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=68.7
Q ss_pred HHHHhcCCCCcccccCchhhhhcc-cccccCChHHHHHhcCcCcchHHHHHHHHhhhhccc-chhchhhhhhhhcccCCc
Q psy10958 160 LEELENSTTPVDQMLSEKSAKKAN-LDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDS-RNEKLTKTFSAKKANLDK 237 (321)
Q Consensus 160 l~~l~~~~~~v~~~l~~~~~~~~~-~~~l~~~e~~f~~~~~~d~~a~~~l~eGi~~F~~d~-v~~KLl~~laaka~~~~~ 237 (321)
+++|...+....+.|+..+..+.+ ++... -..++--.-..+.|.... ++.|.+.- ..++|...... .+
T Consensus 251 ~~~l~~~ga~~qr~LwAsT~vk~~~~~~~~-yV~~L~G~dtvnT~p~~t----l~a~~~~g~~~~~l~~~~~~----a~- 320 (368)
T PRK03343 251 WAALAAAGARPQRPLWASTGTKNPAYSDTL-YVDELVAPDTVNTMPEAT----LDAFADHGEVADTLTGDYEE----AQ- 320 (368)
T ss_pred hHHHHhcCCcccccceeccccCCCccCccc-cHHHccCCCccCCCCHHH----HHHHHhcCCccccCCCchhh----HH-
Confidence 555666777888888877655432 22221 001111111123344444 33344322 22344433221 11
Q ss_pred CCCChHHHHhHhccCchhhhhHHHHHhhHHHHHHHHHHHHHHHHhc
Q psy10958 238 ITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRKLETLLKELILK 283 (321)
Q Consensus 238 ~~~~e~~Fr~~~n~d~mA~ekL~egIr~F~~d~~~L~~~l~~~~~~ 283 (321)
..+++-+ +|.+|.|.|++++|.|||++|+++.++|.+.|++|+..
T Consensus 321 ~~l~~l~-~~gid~d~~~~~ll~eGi~~F~~~~~~Ll~~l~~k~~~ 365 (368)
T PRK03343 321 AVLAALA-ALGIDLDDVTAVLEEEGVDKFEASWNELLASLEAKLDA 365 (368)
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1457777 99999999999999999999999999999999988764
No 32
>TIGR00876 tal_mycobact transaldolase, mycobacterial type. This model describes one of three related but easily separable famiiles of known and putative transaldolases. This family and the family typified by E. coli TalA and TalB both contain experimentally verified examples.
Probab=96.33 E-value=0.0059 Score=60.05 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 290 QTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
.+..++|.|.+.| ++++.+|||||+|||||
T Consensus 74 di~~A~D~L~p~~--e~~~g~~G~VS~EVdP~ 103 (350)
T TIGR00876 74 DILQACDALMPLW--EDSDGNDGRISIEIDPF 103 (350)
T ss_pred HHHHHHHHHHHHH--HHhCCCCCcEEEEEccc
Confidence 5588999999999 89999999999999986
No 33
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.17 E-value=0.38 Score=46.08 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=93.5
Q ss_pred HhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH----HHHHHHHHHhhCceeeeeecc
Q psy10958 12 ILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG----IQAAKVLESEYGIHCNLTLLF 87 (321)
Q Consensus 12 i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG----i~A~~~L~~~~GI~vn~TlvF 87 (321)
+.+..++++.+|+-+ ..|.+.+.+..+++.+. |+ +-+.+=+-...+| .+.++.+.+..++++-+-.+.
T Consensus 110 i~~~~~~~~~~ql~~--~~~~~~~~~~i~~~~~~----g~--~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~ 181 (299)
T cd02809 110 VAAAAPGPRWFQLYV--PRDREITEDLLRRAEAA----GY--KALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGIL 181 (299)
T ss_pred HHHhcCCCeEEEEee--cCCHHHHHHHHHHHHHc----CC--CEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecC
Confidence 334445788899843 23666666555554442 32 2333333222211 356677775447888888889
Q ss_pred CHHHHHHHHHhcCceeecCC---CCCCCchHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHHHHH
Q psy10958 88 AFAQAVACAEAGVTLISPYA---PTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPKLLE 161 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~iSpf~---~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~l~ 161 (321)
|.+.+..|.++|++.|..-+ +..+.|......+.+..+..+.+..|++. .+++..++.. ..|+|.|-+.-.++.
T Consensus 182 s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~ 261 (299)
T cd02809 182 TPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLY 261 (299)
T ss_pred CHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 99999999999999887763 33334555555555444444324556655 5999999987 479999999988888
Q ss_pred HHhc
Q psy10958 162 ELEN 165 (321)
Q Consensus 162 ~l~~ 165 (321)
.+..
T Consensus 262 ~~~~ 265 (299)
T cd02809 262 GLAA 265 (299)
T ss_pred HHHh
Confidence 7764
No 34
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=96.07 E-value=0.0098 Score=58.37 Aligned_cols=31 Identities=32% Similarity=0.300 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 289 EQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
+.+..++|+|.++|+ +++.+|||||+|||||
T Consensus 70 ~di~~a~d~l~p~~~--~~~g~~G~Vs~EVdP~ 100 (338)
T cd00955 70 EDIQDACDLLAPVYE--QTGGNDGYVSLEVSPR 100 (338)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCCeEEEEeccc
Confidence 457789999999997 8999999999999986
No 35
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=95.82 E-value=0.014 Score=55.08 Aligned_cols=47 Identities=23% Similarity=0.041 Sum_probs=38.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhHHHhhcC--CCcceecccCC
Q psy10958 275 TLLKELILKKKNIAEQTEAAMDKLVILFGTEILNII--PGRVSTEVDAR 321 (321)
Q Consensus 275 ~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 321 (321)
+.|+..-+...++.+++.+.+|+.+++++.+|++.+ +||||+|||+|
T Consensus 46 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~G~Vs~ev~~~ 94 (252)
T cd00439 46 RTLVESGKDIESAYWELVVKDIQDACKLFEPIYDQTEADGRVSVEVSAR 94 (252)
T ss_pred HHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEEecc
Confidence 333333334567889999999999999999999999 99999999985
No 36
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.72 E-value=0.17 Score=46.39 Aligned_cols=111 Identities=22% Similarity=0.254 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec-CCHHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCc-eeec
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLA-STWEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVT-LISP 105 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP-aT~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~-~iSp 105 (321)
..|.+..++-++.|++- |+. +|-|+ .|+..+++++++.+++ ++.+=+-.|.+.+|+..|.+||+. .+||
T Consensus 16 ~~~~e~a~~~~~al~~~----Gi~----~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP 87 (204)
T TIGR01182 16 IDDVDDALPLAKALIEG----GLR----VLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSP 87 (204)
T ss_pred cCCHHHHHHHHHHHHHc----CCC----EEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECC
Confidence 45888888888888874 554 44444 5567899999998765 477888899999999999999997 5688
Q ss_pred CC------------CCCCCchHHHHHHHHHHHhcCCce-EEeecccCC-HhHHHHHh
Q psy10958 106 YA------------PTEDPGVVSVTKIYNYYKKFGYKT-VVMGASFRN-TGEILALA 148 (321)
Q Consensus 106 f~------------~~~d~Gi~~v~~i~~~~~~~~~~T-~vl~AS~r~-~~~v~~La 148 (321)
.. -.--||.....++++.++ +|++. |+-.|+.-. +.|+.+|.
T Consensus 88 ~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~-~Ga~~vKlFPA~~~GG~~yikal~ 143 (204)
T TIGR01182 88 GLTPELAKHAQDHGIPIIPGVATPSEIMLALE-LGITALKLFPAEVSGGVKMLKALA 143 (204)
T ss_pred CCCHHHHHHHHHcCCcEECCCCCHHHHHHHHH-CCCCEEEECCchhcCCHHHHHHHh
Confidence 71 011255555555555543 23332 555555333 55555543
No 37
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.69 E-value=0.15 Score=46.58 Aligned_cols=131 Identities=17% Similarity=0.173 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC-CHHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCc-eeec
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS-TWEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVT-LISP 105 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa-T~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~-~iSp 105 (321)
..|.+..++-++.|++- |+. +|-|+. |+..++++++|.+++ ++.+=+-.|.+.+|+..|.+||+. .+||
T Consensus 12 ~~~~~~a~~ia~al~~g----Gi~----~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP 83 (201)
T PRK06015 12 IDDVEHAVPLARALAAG----GLP----AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP 83 (201)
T ss_pred cCCHHHHHHHHHHHHHC----CCC----EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC
Confidence 35787778888877774 554 344443 567899999998654 577778899999999999999997 5699
Q ss_pred C------------CCCCCCchHHHHHHHHHHHhcCCc-eEEeecccC-CHhHHHHHhC----CCeE---EeCHHHHHHHh
Q psy10958 106 Y------------APTEDPGVVSVTKIYNYYKKFGYK-TVVMGASFR-NTGEILALAG----CDLM---TIGPKLLEELE 164 (321)
Q Consensus 106 f------------~~~~d~Gi~~v~~i~~~~~~~~~~-T~vl~AS~r-~~~~v~~LaG----~d~v---Tipp~~l~~l~ 164 (321)
. +-.--||.....++++.++. |++ .|+-.|+.- .+.|+..+.| ...+ =|+++.+.+++
T Consensus 84 ~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~-Ga~~vK~FPa~~~GG~~yikal~~plp~~~l~ptGGV~~~n~~~~l 162 (201)
T PRK06015 84 GTTQELLAAANDSDVPLLPGAATPSEVMALREE-GYTVLKFFPAEQAGGAAFLKALSSPLAGTFFCPTGGISLKNARDYL 162 (201)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEECCchhhCCHHHHHHHHhhCCCCcEEecCCCCHHHHHHHH
Confidence 8 11223888888888877654 444 366677665 4777777543 2223 25667777777
Q ss_pred cCCC
Q psy10958 165 NSTT 168 (321)
Q Consensus 165 ~~~~ 168 (321)
+.+.
T Consensus 163 ~ag~ 166 (201)
T PRK06015 163 SLPN 166 (201)
T ss_pred hCCC
Confidence 7543
No 38
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.47 E-value=0.2 Score=46.53 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC-CHHHHHHHHHHHHhh-----CceeeeeeccCHHHHHHHHHhcCc-
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS-TWEGIQAAKVLESEY-----GIHCNLTLLFAFAQAVACAEAGVT- 101 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa-T~eGi~A~~~L~~~~-----GI~vn~TlvFS~~Qa~aaa~Aga~- 101 (321)
..|.+..++-++.|++- |+. +|-|+. |+.++++++.|.+++ ++.+=+-.|.+.+|+..|.++|+.
T Consensus 23 ~~~~~~a~~~~~al~~g----Gi~----~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 23 HADVEVAKKVIKACYDG----GAR----VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF 94 (222)
T ss_pred cCCHHHHHHHHHHHHHC----CCC----EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE
Confidence 46888888888877774 564 455554 557889999886322 377888899999999999999997
Q ss_pred eeecCC------------CCCCCchHHHHHHHHHHHhcCCce-EEeecccCCHhHHHHHhC
Q psy10958 102 LISPYA------------PTEDPGVVSVTKIYNYYKKFGYKT-VVMGASFRNTGEILALAG 149 (321)
Q Consensus 102 ~iSpf~------------~~~d~Gi~~v~~i~~~~~~~~~~T-~vl~AS~r~~~~v~~LaG 149 (321)
.+||.- ..--||+.+..++.+.++. |++. |+-.|+.-.+.++.+|.|
T Consensus 95 iVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~-Ga~~vKlFPA~~~G~~~ikal~~ 154 (222)
T PRK07114 95 IVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEEL-GCEIVKLFPGSVYGPGFVKAIKG 154 (222)
T ss_pred EECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEECcccccCHHHHHHHhc
Confidence 569981 1223777777777776643 3443 666666556667766544
No 39
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.11 E-value=0.3 Score=49.11 Aligned_cols=89 Identities=25% Similarity=0.304 Sum_probs=69.1
Q ss_pred HHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC---C-HHHHHHHHHHHHhhCce----e
Q psy10958 10 TEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS---T-WEGIQAAKVLESEYGIH----C 81 (321)
Q Consensus 10 ~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa---T-~eGi~A~~~L~~~~GI~----v 81 (321)
++.-..+.|-+|.-++| .++.+--++-|++|.++ |+ +-||||=-+ | .++.+-++.+++..+++ |
T Consensus 135 kk~G~h~q~~i~YT~sP--vHt~e~yv~~akel~~~----g~--DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHt 206 (472)
T COG5016 135 KKHGAHVQGTISYTTSP--VHTLEYYVELAKELLEM----GV--DSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHT 206 (472)
T ss_pred HhcCceeEEEEEeccCC--cccHHHHHHHHHHHHHc----CC--CEEEeecccccCChHHHHHHHHHHHHhcCCeeEEec
Confidence 33334456889999999 68999999999999987 55 599999542 2 35677777777766665 4
Q ss_pred eeeeccCHHHHHHHHHhcCc----eeecC
Q psy10958 82 NLTLLFAFAQAVACAEAGVT----LISPY 106 (321)
Q Consensus 82 n~TlvFS~~Qa~aaa~Aga~----~iSpf 106 (321)
..|.=+|..-+++|.+||++ .+||+
T Consensus 207 H~TsG~a~m~ylkAvEAGvD~iDTAisp~ 235 (472)
T COG5016 207 HATSGMAEMTYLKAVEAGVDGIDTAISPL 235 (472)
T ss_pred ccccchHHHHHHHHHHhCcchhhhhhccc
Confidence 56888899999999999996 57999
No 40
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=95.00 E-value=0.031 Score=53.40 Aligned_cols=33 Identities=39% Similarity=0.553 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhHHHhhcC--CCcceecccCC
Q psy10958 289 EQTEAAMDKLVILFGTEILNII--PGRVSTEVDAR 321 (321)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 321 (321)
....++.|+++|++|.++++.+ ||+||+|||+|
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~lg~~G~vsvqv~p~ 86 (287)
T PF00923_consen 52 KSWEEIYDKLAVEDGREALDLLGKDGPVSVQVDPR 86 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHTSSSEEEEE-SGG
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCc
Confidence 7888999999999999999999 99999999984
No 41
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.95 E-value=0.17 Score=46.03 Aligned_cols=131 Identities=25% Similarity=0.309 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC-CHHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCc-eeec
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS-TWEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVT-LISP 105 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa-T~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~-~iSp 105 (321)
..|.+..++-++.|++- |+. +|-|+. |+.++++++.+.+++ ++.+=+-.|.+.+|+..|.+||+. .+||
T Consensus 16 ~~~~~~a~~~~~al~~g----Gi~----~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP 87 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEG----GIR----AIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP 87 (196)
T ss_dssp TSSGGGHHHHHHHHHHT----T------EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES
T ss_pred cCCHHHHHHHHHHHHHC----CCC----EEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC
Confidence 45777777777777764 553 344443 556789998887654 888888999999999999999997 5688
Q ss_pred CC------------CCCCCchHHHHHHHHHHHhcCCc-eEEeecccCC-HhHHHHHhCC--C--eE---EeCHHHHHHHh
Q psy10958 106 YA------------PTEDPGVVSVTKIYNYYKKFGYK-TVVMGASFRN-TGEILALAGC--D--LM---TIGPKLLEELE 164 (321)
Q Consensus 106 f~------------~~~d~Gi~~v~~i~~~~~~~~~~-T~vl~AS~r~-~~~v~~LaG~--d--~v---Tipp~~l~~l~ 164 (321)
-- -.--||+....++.+.++ +|++ .|+-.|+.-. +.++.+|.|+ + .+ =|+++-+.++.
T Consensus 88 ~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~-~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l 166 (196)
T PF01081_consen 88 GFDPEVIEYAREYGIPYIPGVMTPTEIMQALE-AGADIVKLFPAGALGGPSYIKALRGPFPDLPFMPTGGVNPDNLAEYL 166 (196)
T ss_dssp S--HHHHHHHHHHTSEEEEEESSHHHHHHHHH-TT-SEEEETTTTTTTHHHHHHHHHTTTTT-EEEEBSS--TTTHHHHH
T ss_pred CCCHHHHHHHHHcCCcccCCcCCHHHHHHHHH-CCCCEEEEecchhcCcHHHHHHHhccCCCCeEEEcCCCCHHHHHHHH
Confidence 71 112277777777777763 4454 3666777666 7777776653 2 12 24456666666
Q ss_pred cCCC
Q psy10958 165 NSTT 168 (321)
Q Consensus 165 ~~~~ 168 (321)
+.+.
T Consensus 167 ~ag~ 170 (196)
T PF01081_consen 167 KAGA 170 (196)
T ss_dssp TSTT
T ss_pred hCCC
Confidence 6543
No 42
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.54 E-value=0.59 Score=42.99 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhh----CceeeeeeccCHHHHHHHHHhcCc-ee
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEY----GIHCNLTLLFAFAQAVACAEAGVT-LI 103 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~----GI~vn~TlvFS~~Qa~aaa~Aga~-~i 103 (321)
..|.+..+.-++.|++- |+. .+=|-. .|+.+++++++|.+++ ++.+=+-.|.+.+|+..|.+||+. .+
T Consensus 21 ~~~~~~a~~~~~al~~~----Gi~--~iEit~-~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 21 GESKEEALKISLAVIKG----GIK--AIEVTY-TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred CCCHHHHHHHHHHHHHC----CCC--EEEEEC-CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 45888888888777774 554 444443 2667899999998765 378888899999999999999997 56
Q ss_pred ecC
Q psy10958 104 SPY 106 (321)
Q Consensus 104 Spf 106 (321)
||.
T Consensus 94 sP~ 96 (213)
T PRK06552 94 SPS 96 (213)
T ss_pred CCC
Confidence 887
No 43
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.37 E-value=0.65 Score=42.75 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec-CCHHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCc-eeec
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLA-STWEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVT-LISP 105 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP-aT~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~-~iSp 105 (321)
..|.+..++-++.+++- |++ +|-|+ .|+.|++++++|.+++ ++.+-+-.+.+..|+..|.+||++ .+||
T Consensus 23 ~~~~~~a~~i~~al~~~----Gi~----~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAG----GLP----VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred cCCHHHHHHHHHHHHHc----CCC----EEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 56888888888777774 554 34444 6678999999998765 577888899999999999999998 4578
Q ss_pred C
Q psy10958 106 Y 106 (321)
Q Consensus 106 f 106 (321)
.
T Consensus 95 ~ 95 (212)
T PRK05718 95 G 95 (212)
T ss_pred C
Confidence 6
No 44
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=93.94 E-value=0.04 Score=51.66 Aligned_cols=36 Identities=44% Similarity=0.604 Sum_probs=28.8
Q ss_pred CCHHHHHHHH-HHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 285 KNIAEQTEAA-MDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 285 ~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
-||.-..... ..+..+.||.||+++||||| +|||+|
T Consensus 34 TNPSli~ka~~~~~~~~~~~~ei~~~v~G~v-~e~~~~ 70 (239)
T COG0176 34 TNPSLILKAGAKPRDAVEFGKEILKIVPGRV-TEVDEV 70 (239)
T ss_pred CCHHHHHhhcccCccHHHHHHHHHhcCCCCC-eEeeee
Confidence 5666554443 24889999999999999999 999986
No 45
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.85 E-value=0.89 Score=41.96 Aligned_cols=130 Identities=21% Similarity=0.202 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC-HHHHHHHHHHHHhhC-ceeeeeeccCHHHHHHHHHhcCc-eeec
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST-WEGIQAAKVLESEYG-IHCNLTLLFAFAQAVACAEAGVT-LISP 105 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT-~eGi~A~~~L~~~~G-I~vn~TlvFS~~Qa~aaa~Aga~-~iSp 105 (321)
..+.|+.+..++.|++- |++ .|-||-+ +...++|+.|.++++ +-+=+-.|.+.+|+..+++||+. .+||
T Consensus 21 ~~~~e~a~~~a~Ali~g----Gi~----~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP 92 (211)
T COG0800 21 GDDVEEALPLAKALIEG----GIP----AIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSP 92 (211)
T ss_pred eCCHHHHHHHHHHHHHc----CCC----eEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECC
Confidence 46888888888888874 565 6777754 457899999988765 55566689999999999999997 5688
Q ss_pred C---------CC---CCCCchHHHHHHHHHHHhcCCc-eEEeecccC-CHhHHHHHhCCCe----E---EeCHHHHHHHh
Q psy10958 106 Y---------AP---TEDPGVVSVTKIYNYYKKFGYK-TVVMGASFR-NTGEILALAGCDL----M---TIGPKLLEELE 164 (321)
Q Consensus 106 f---------~~---~~d~Gi~~v~~i~~~~~~~~~~-T~vl~AS~r-~~~~v~~LaG~d~----v---Tipp~~l~~l~ 164 (321)
- .+ .--||+....++...++ +|++ .|+-.|+.- .+.++..+.|+-. + -|+++.+.++.
T Consensus 93 ~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale-~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~N~~~yl 171 (211)
T COG0800 93 GLNPEVAKAANRYGIPYIPGVATPTEIMAALE-LGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLDNAADYL 171 (211)
T ss_pred CCCHHHHHHHHhCCCcccCCCCCHHHHHHHHH-cChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCCHHHHHHHH
Confidence 7 11 12389999999888765 4555 488888876 7778887776432 2 35667777777
Q ss_pred cCC
Q psy10958 165 NST 167 (321)
Q Consensus 165 ~~~ 167 (321)
..+
T Consensus 172 a~g 174 (211)
T COG0800 172 AAG 174 (211)
T ss_pred hCC
Confidence 754
No 46
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=93.56 E-value=3.2 Score=39.51 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=95.5
Q ss_pred HhccCC-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe----------cCCHHHHHHHHHHHHhhCce
Q psy10958 12 ILNIIP-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL----------ASTWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 12 i~~~~~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI----------PaT~eGi~A~~~L~~~~GI~ 80 (321)
+++.++ ..+.+=-|..-+++.++-|.-|+-=.+++...|....| +||+ |-.-+-++|+++|.++ |..
T Consensus 62 ~l~~i~~~~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~-wIKLEVi~D~~~LlPD~~etl~Aae~Lv~e-GF~ 139 (267)
T CHL00162 62 LLNGLDWNKLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNN-FVKLEVISDPKYLLPDPIGTLKAAEFLVKK-GFT 139 (267)
T ss_pred HHHhhchhccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCC-eEEEEEeCCCcccCCChHHHHHHHHHHHHC-CCE
Confidence 444443 23333344445667766666665444444323333233 7776 4555789999999998 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecCC-CC-CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeC
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPYA-PT-EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG 156 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf~-~~-~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTip 156 (321)
|.-..--.+.=+....++||..+=|.+ .. ..-|+.+-..+.-+..+.. -..+..|.+.+..++.. -.|||.+-+.
T Consensus 140 VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~-vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 140 VLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAK-IPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred EeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCC-CcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 998888888889999999999888873 22 2345555555544444332 23567799999999987 4899988554
Q ss_pred HHH
Q psy10958 157 PKL 159 (321)
Q Consensus 157 p~~ 159 (321)
-.+
T Consensus 219 SaI 221 (267)
T CHL00162 219 TAV 221 (267)
T ss_pred cee
Confidence 443
No 47
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.32 E-value=4.2 Score=38.46 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=94.8
Q ss_pred HHhccCC-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe----------cCCHHHHHHHHHHHHhhCc
Q psy10958 11 EILNIIP-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL----------ASTWEGIQAAKVLESEYGI 79 (321)
Q Consensus 11 ~i~~~~~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI----------PaT~eGi~A~~~L~~~~GI 79 (321)
.+++.++ ..+.+=-|..-+++.++-|.-|+--.+++ ..=+||+ |-..+-++|+++|.++ |.
T Consensus 53 ~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~-------~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~-Gf 124 (250)
T PRK00208 53 NLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREAL-------GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE-GF 124 (250)
T ss_pred hHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHC-CC
Confidence 3445554 23444445556677877777776666653 2337775 4444789999999988 99
Q ss_pred eeeeeeccCHHHHHHHHHhcCceeecCCCC--CCCchHHHHHHHHHHHhcCCc-eEEeecccCCHhHHHH--HhCCCeEE
Q psy10958 80 HCNLTLLFAFAQAVACAEAGVTLISPYAPT--EDPGVVSVTKIYNYYKKFGYK-TVVMGASFRNTGEILA--LAGCDLMT 154 (321)
Q Consensus 80 ~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~--~d~Gi~~v~~i~~~~~~~~~~-T~vl~AS~r~~~~v~~--LaG~d~vT 154 (321)
.|.--..=++..+.+.+++||+++-|.+.. ..-|+.. ....+.+++. .+ ..+..|.+.+++++.. -.|+|.+-
T Consensus 125 ~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~-~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVl 202 (250)
T PRK00208 125 VVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLN-PYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (250)
T ss_pred EEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCC-HHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 998778889999999999999999776221 1134433 3333444443 23 4566788999999998 47999987
Q ss_pred eCHHHH
Q psy10958 155 IGPKLL 160 (321)
Q Consensus 155 ipp~~l 160 (321)
+.-.+.
T Consensus 203 V~SAIt 208 (250)
T PRK00208 203 LNTAIA 208 (250)
T ss_pred EChHhh
Confidence 766654
No 48
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=93.13 E-value=1.8 Score=38.69 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=62.7
Q ss_pred eEEEecC---CHHHHHHHHHHHHhh-Cceeeeee-ccCHH--HHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcC
Q psy10958 56 ILIKLAS---TWEGIQAAKVLESEY-GIHCNLTL-LFAFA--QAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFG 128 (321)
Q Consensus 56 v~IKIPa---T~eGi~A~~~L~~~~-GI~vn~Tl-vFS~~--Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~ 128 (321)
-.|||+. ++.|++.++.|.+.+ +..+-+.+ ++... |+..+.++|+++++.-. . .+-..+.++.++.+++|
T Consensus 26 ~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~-~--~~~~~~~~~i~~~~~~g 102 (206)
T TIGR03128 26 DIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLG-V--ADDATIKGAVKAAKKHG 102 (206)
T ss_pred eEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEec-c--CCHHHHHHHHHHHHHcC
Confidence 3799953 346899999998753 33444443 44655 88999999999887331 1 12245677888888887
Q ss_pred CceEEeecccCC-HhHHHH--HhCCCeEEeCH
Q psy10958 129 YKTVVMGASFRN-TGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 129 ~~T~vl~AS~r~-~~~v~~--LaG~d~vTipp 157 (321)
.+.-+-..+... ..++.. -.|+|.++++|
T Consensus 103 ~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 103 KEVQVDLINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred CEEEEEecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 544332123333 345543 24999998865
No 49
>PLN02535 glycolate oxidase
Probab=92.96 E-value=1.3 Score=44.16 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC---CCCCCCchHHHHHHHHHHHhcCCceEEeec-
Q psy10958 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY---APTEDPGVVSVTKIYNYYKKFGYKTVVMGA- 136 (321)
Q Consensus 61 PaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf---~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A- 136 (321)
+.||+=|+.++... +.++-+--|.+.+.|..|.++|++.|..- +|.-+.++..+..+.++.+..+.+..|++.
T Consensus 209 ~~tW~~i~~lr~~~---~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dG 285 (364)
T PLN02535 209 SLSWKDIEWLRSIT---NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDG 285 (364)
T ss_pred CCCHHHHHHHHhcc---CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeC
Confidence 46777666666643 68999999999999999999999987655 455555666666666666655444555555
Q ss_pred ccCCHhHHHH--HhCCCeEEeCHHHHHHHhc
Q psy10958 137 SFRNTGEILA--LAGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 137 S~r~~~~v~~--LaG~d~vTipp~~l~~l~~ 165 (321)
.+|+..+|.. ..|++.|.|.-..+..+..
T Consensus 286 GIr~g~Dv~KALalGA~aV~vGr~~l~~l~~ 316 (364)
T PLN02535 286 GVRRGTDVFKALALGAQAVLVGRPVIYGLAA 316 (364)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHHhhhhh
Confidence 5999999987 4799999999999988775
No 50
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.80 E-value=5.5 Score=37.65 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=92.6
Q ss_pred HhccCC-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe----------cCCHHHHHHHHHHHHhhCce
Q psy10958 12 ILNIIP-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL----------ASTWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 12 i~~~~~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI----------PaT~eGi~A~~~L~~~~GI~ 80 (321)
+++.++ ..+.+=-|..-+++.++-|.-|+--.+++ ..=+||+ |--.+-++|+++|.++ |..
T Consensus 54 ~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~-------~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~-Gf~ 125 (248)
T cd04728 54 FLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREAL-------GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKE-GFT 125 (248)
T ss_pred HHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEEecCccccccCHHHHHHHHHHHHHC-CCE
Confidence 344444 23344445555677766666666555553 2237775 3344679999999988 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecCCCC--CCCchHHHHHHHHHHHhcCCc-eEEeecccCCHhHHHH--HhCCCeEEe
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPYAPT--EDPGVVSVTKIYNYYKKFGYK-TVVMGASFRNTGEILA--LAGCDLMTI 155 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~--~d~Gi~~v~~i~~~~~~~~~~-T~vl~AS~r~~~~v~~--LaG~d~vTi 155 (321)
|.--..=++..+...+++||+++-|.+.. ..-|+.. ....+.+++. .+ ..+..|.+.++.++.. -.|+|.+-+
T Consensus 126 vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 126 VLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLN-PYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred EEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCC-HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 98788889999999999999999886221 1234433 2233344443 33 3566788999999987 489999877
Q ss_pred CHHHH
Q psy10958 156 GPKLL 160 (321)
Q Consensus 156 pp~~l 160 (321)
.-.+.
T Consensus 204 ~SAIt 208 (248)
T cd04728 204 NTAIA 208 (248)
T ss_pred ChHhc
Confidence 66654
No 51
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=92.42 E-value=3.4 Score=39.14 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=93.7
Q ss_pred CcEEEEe---cCCcCCCHHHHHHHHHHHHHHHHHcCCCC---CceE---EEecCCHHHHHHHHHH----HHhhCceeeee
Q psy10958 18 GRVSTEV---DARLSFDKDASIAKAKKYIKMYEEAGIDK---ERIL---IKLASTWEGIQAAKVL----ESEYGIHCNLT 84 (321)
Q Consensus 18 G~Vs~EV---~p~la~d~e~~i~~A~~L~~~~~~~gi~~---~nv~---IKIPaT~eGi~A~~~L----~~~~GI~vn~T 84 (321)
|.||+.- +|+...+.+++++.|.+=...|++.|+|. +|.. .+-+..++-+.++..+ ..+.++++=+-
T Consensus 7 GmvHL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVn 86 (254)
T PF03437_consen 7 GMVHLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVN 86 (254)
T ss_pred EEEcCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEee
Confidence 7777775 78888899999999999999999999984 3321 2344677777665444 44447777777
Q ss_pred ecc-CHHHHHHHHHh-cCceeecC----CCCCCCchH--HHHHHHHHHHhcCCceEEee---------cccCCHhHHHH-
Q psy10958 85 LLF-AFAQAVACAEA-GVTLISPY----APTEDPGVV--SVTKIYNYYKKFGYKTVVMG---------ASFRNTGEILA- 146 (321)
Q Consensus 85 lvF-S~~Qa~aaa~A-ga~~iSpf----~~~~d~Gi~--~v~~i~~~~~~~~~~T~vl~---------AS~r~~~~v~~- 146 (321)
++. +...+++.|.| |+++|-.- ....+-|+- .+.++++|-++.+.+.++++ .+-|++.+...
T Consensus 87 vL~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~ 166 (254)
T PF03437_consen 87 VLRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKD 166 (254)
T ss_pred eecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHH
Confidence 788 77777877766 88877533 344555643 34677777777788866665 12355655543
Q ss_pred ---HhCCCeEEe
Q psy10958 147 ---LAGCDLMTI 155 (321)
Q Consensus 147 ---LaG~d~vTi 155 (321)
..++|.+.+
T Consensus 167 a~~~~~aDaviV 178 (254)
T PF03437_consen 167 AVERGGADAVIV 178 (254)
T ss_pred HHHhcCCCEEEE
Confidence 358887755
No 52
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.03 E-value=3.5 Score=37.59 Aligned_cols=118 Identities=24% Similarity=0.336 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhC--ceeeeeeccCHHHHHHHHHhcCcee-ec
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYG--IHCNLTLLFAFAQAVACAEAGVTLI-SP 105 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~G--I~vn~TlvFS~~Qa~aaa~Aga~~i-Sp 105 (321)
..+.+..++.++.+++- |+. .+-|-. -|+.+.++++.|.++++ +.+=+-.|++.+|+..|.++|++++ ||
T Consensus 18 ~~~~~~~~~~~~a~~~g----Gi~--~iEvt~-~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 18 GITPDEALAHVGALIEA----GFR--AIEIPL-NSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred CCCHHHHHHHHHHHHHC----CCC--EEEEeC-CCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 35788888888888874 554 333321 34457889999987765 4555668999999999999999854 55
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEe------CHHHHHHHhc
Q psy10958 106 YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI------GPKLLEELEN 165 (321)
Q Consensus 106 f~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTi------pp~~l~~l~~ 165 (321)
. .++.+... .+..+ .....+..++.++.+ -.|+|++.+ +++.++++..
T Consensus 91 ~---~~~~v~~~------~~~~~---~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~ 146 (206)
T PRK09140 91 N---TDPEVIRR------AVALG---MVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRA 146 (206)
T ss_pred C---CCHHHHHH------HHHCC---CcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHh
Confidence 3 22222211 11121 134455777777766 368888755 3445555544
No 53
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=92.00 E-value=1.9 Score=42.62 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC---CCCCCCchHHHHHHHHHHHhcCCceEEeec-c
Q psy10958 62 STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY---APTEDPGVVSVTKIYNYYKKFGYKTVVMGA-S 137 (321)
Q Consensus 62 aT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf---~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S 137 (321)
.||+- ++.+.+.-++++-+--|+|.+.+..|.++|+++|-.= +|.-|-|+..+..+.+.-+..+.+..|++- .
T Consensus 212 ~~w~~---i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgG 288 (356)
T PF01070_consen 212 LTWDD---IEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGG 288 (356)
T ss_dssp -SHHH---HHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS
T ss_pred CCHHH---HHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCC
Confidence 56754 4555544589999999999999999999999865443 566666666665555555555667777765 4
Q ss_pred cCCHhHHHH--HhCCCeEEeCHHHHHHHhc
Q psy10958 138 FRNTGEILA--LAGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 138 ~r~~~~v~~--LaG~d~vTipp~~l~~l~~ 165 (321)
+|+-.+|.. ..|++.+-+.-.++..+..
T Consensus 289 ir~g~Dv~kalaLGA~~v~igr~~l~~l~~ 318 (356)
T PF01070_consen 289 IRRGLDVAKALALGADAVGIGRPFLYALAA 318 (356)
T ss_dssp --SHHHHHHHHHTT-SEEEESHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCeEEEccHHHHHHHH
Confidence 999999987 4799999999999999865
No 54
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=90.67 E-value=9.5 Score=35.98 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=90.0
Q ss_pred HHhccCC-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe----------cCCHHHHHHHHHHHHhhCc
Q psy10958 11 EILNIIP-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL----------ASTWEGIQAAKVLESEYGI 79 (321)
Q Consensus 11 ~i~~~~~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI----------PaT~eGi~A~~~L~~~~GI 79 (321)
.+++.++ -.+.+=-|..-+++.++-|.-|+--.+++ ..=+||+ |-..+-++|+++|.++ |.
T Consensus 53 ~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~-------~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~e-GF 124 (247)
T PF05690_consen 53 NILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAF-------GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE-GF 124 (247)
T ss_dssp HCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTT-------S-SEEEE--BS-TTT--B-HHHHHHHHHHHHHT-T-
T ss_pred cHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHC-CC
Confidence 4556665 34555566667788877777776666653 3447786 6666889999999998 99
Q ss_pred eeeeeeccCHHHHHHHHHhcCceeecCC-CC-CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEe
Q psy10958 80 HCNLTLLFAFAQAVACAEAGVTLISPYA-PT-EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 155 (321)
Q Consensus 80 ~vn~TlvFS~~Qa~aaa~Aga~~iSpf~-~~-~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTi 155 (321)
.|.-..-=.+.=+....++||..+=|.+ .. ..-|+.+-..+..+..+.+. +.|+-|.+-.+.++.. -.|||.|-+
T Consensus 125 ~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~v-PvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 125 VVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADV-PVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSS-SBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred EEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcCC-cEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 9998888888889999999999888883 22 23455555555545555533 4567889999998887 489999977
Q ss_pred CHHH
Q psy10958 156 GPKL 159 (321)
Q Consensus 156 pp~~ 159 (321)
.-.+
T Consensus 204 NTAi 207 (247)
T PF05690_consen 204 NTAI 207 (247)
T ss_dssp SHHH
T ss_pred hhHH
Confidence 6664
No 55
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=90.66 E-value=7.6 Score=40.16 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEec--CCHHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCceee----cC-
Q psy10958 35 SIAKAKKYIKMYEEAGIDKERILIKLA--STWEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLIS----PY- 106 (321)
Q Consensus 35 ~i~~A~~L~~~~~~~gi~~~nv~IKIP--aT~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~iS----pf- 106 (321)
.++.++.|++. |++ -|.|-.+ -|..-+..++++++.+ ++.+-+--+.|.+++..+.+||+++|- |=
T Consensus 242 ~~~~~~~l~~a----g~d--~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 242 DIERAAALIEA----GVD--VLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHC----CCC--EEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 37888888875 443 5555543 3334477888888753 566666669999999999999999873 31
Q ss_pred ---CC----CCCCchHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH-H-hCCCeEEeCHH
Q psy10958 107 ---AP----TEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA-L-AGCDLMTIGPK 158 (321)
Q Consensus 107 ---~~----~~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~-L-aG~d~vTipp~ 158 (321)
.+ .+-|.+..+.++.++.++++ ..+++. .+++..++.. + +|+|.+-+.-.
T Consensus 316 ~~~t~~~~~~g~p~~~ai~~~~~~~~~~~--v~vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 316 ICITQEVCAVGRPQASAVYHVARYARERG--VPCIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred ccccchhccCCCChHHHHHHHHHHHhhcC--CeEEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 12 23366667777777777765 334443 6999999997 3 79999977665
No 56
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.06 E-value=5.8 Score=41.14 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH-----HHHHHHHHHhhC--ceeeeeeccCHHHHHHHHHhcCceee
Q psy10958 32 KDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG-----IQAAKVLESEYG--IHCNLTLLFAFAQAVACAEAGVTLIS 104 (321)
Q Consensus 32 ~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG-----i~A~~~L~~~~G--I~vn~TlvFS~~Qa~aaa~Aga~~iS 104 (321)
++...+.++.|++. |++ -++ |+ +..| +++++.+.+.++ +.+-+--|.+.+++..+.+|||++|-
T Consensus 240 ~~~~~~ra~~Lv~a----Gvd--~i~--vd-~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 240 TRDYAERVPALVEA----GAD--VLC--ID-SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVK 310 (502)
T ss_pred hhhHHHHHHHHHHh----CCC--eEe--ec-CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEE
Confidence 34567888888875 554 444 45 4443 889999998654 55556669999999999999998763
Q ss_pred cC--------CC-CCC---CchHHHHHHHH----HHHhcCCceEEeec-ccCCHhHHHH-H-hCCCeEEeCHH
Q psy10958 105 PY--------AP-TED---PGVVSVTKIYN----YYKKFGYKTVVMGA-SFRNTGEILA-L-AGCDLMTIGPK 158 (321)
Q Consensus 105 pf--------~~-~~d---~Gi~~v~~i~~----~~~~~~~~T~vl~A-S~r~~~~v~~-L-aG~d~vTipp~ 158 (321)
.= .| .-+ |-+.++.++.+ +++++|....|++- .+|+..+|.. | +|+|.+-+.--
T Consensus 311 vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~ 383 (502)
T PRK07107 311 VGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRY 383 (502)
T ss_pred ECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChh
Confidence 32 13 122 33334444444 44555755555554 5999999886 4 79999866644
No 57
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=89.66 E-value=5.7 Score=39.34 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC---CCCCCCchHHHHHHHHHHHhcCCceEEeec-c
Q psy10958 62 STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY---APTEDPGVVSVTKIYNYYKKFGYKTVVMGA-S 137 (321)
Q Consensus 62 aT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf---~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S 137 (321)
.||+=|+.++... ++++-+-.+.+.+-|..|.++|++.|..- ++.-+.|...+..+.++-+..+.+..|++. .
T Consensus 208 ~~~~~l~~lr~~~---~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGG 284 (351)
T cd04737 208 LSPADIEFIAKIS---GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSG 284 (351)
T ss_pred CCHHHHHHHHHHh---CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECC
Confidence 4776665555543 78888888999999999999999977664 333343433444444444444445666655 5
Q ss_pred cCCHhHHHH--HhCCCeEEeCHHHHHHHhc
Q psy10958 138 FRNTGEILA--LAGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 138 ~r~~~~v~~--LaG~d~vTipp~~l~~l~~ 165 (321)
+|+..+|.. ..|++.|-|.-.++..+..
T Consensus 285 Ir~g~Di~kaLalGA~~V~iGr~~l~~la~ 314 (351)
T cd04737 285 VRRGEHVFKALASGADAVAVGRPVLYGLAL 314 (351)
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHHHHHhh
Confidence 999999887 4799999999999988765
No 58
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=89.21 E-value=5.8 Score=39.78 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC---CCCCCCchHHHHHHHHHHHhcCCceEEee-cc
Q psy10958 62 STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY---APTEDPGVVSVTKIYNYYKKFGYKTVVMG-AS 137 (321)
Q Consensus 62 aT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf---~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~-AS 137 (321)
.||+=|+-++.. .++++-+--|.|.+.|..|.++|++.|-.= +|..|.++..+..+.++-+..+-+..|+. -.
T Consensus 240 ~tW~~i~~lr~~---~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGG 316 (383)
T cd03332 240 LTWEDLAFLREW---TDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSG 316 (383)
T ss_pred CCHHHHHHHHHh---cCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCC
Confidence 466555544443 378999999999999999999999865444 45555454444444444333333344444 46
Q ss_pred cCCHhHHHH-H-hCCCeEEeCHHHHHHHhc
Q psy10958 138 FRNTGEILA-L-AGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 138 ~r~~~~v~~-L-aG~d~vTipp~~l~~l~~ 165 (321)
+|+-.+|.. | .|+|.+-+.-..+-.+..
T Consensus 317 Ir~G~Dv~KALaLGA~~v~iGr~~l~~l~~ 346 (383)
T cd03332 317 VRTGADIMKALALGAKAVLIGRPYAYGLAL 346 (383)
T ss_pred cCcHHHHHHHHHcCCCEEEEcHHHHHHHHh
Confidence 999999987 3 799999999999988865
No 59
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=88.64 E-value=13 Score=35.62 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=94.2
Q ss_pred HHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeecc
Q psy10958 8 FGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLF 87 (321)
Q Consensus 8 ~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvF 87 (321)
.+.+.++. |+=|+|++.. ..+.++.++.++++.+++...|++-+==+.-|+....+ .......+.
T Consensus 89 ~i~~Al~~--G~tsVm~d~s-~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~------------~~~~g~s~t 153 (281)
T PRK06806 89 KIKEALEI--GFTSVMFDGS-HLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDG------------SEDIEMLLT 153 (281)
T ss_pred HHHHHHHc--CCCEEEEcCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCC------------cccccceeC
Confidence 34444443 8999999986 46899999999999999998888633333344433332 111123357
Q ss_pred CHHHHHHHHHh-cCceeecC-----CCC-CC--CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEEeC
Q psy10958 88 AFAQAVACAEA-GVTLISPY-----APT-ED--PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMTIG 156 (321)
Q Consensus 88 S~~Qa~aaa~A-ga~~iSpf-----~~~-~d--~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vTip 156 (321)
+++|+..+++. |++|+++= +.. .. -|+..++++.+.. +.+.-..|+|=-+.+++..+ .|++-+-+.
T Consensus 154 ~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~---~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 154 STTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV---HIPLVLHGGSGISPEDFKKCIQHGIRKINVA 230 (281)
T ss_pred CHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEEEEh
Confidence 99999999865 99999882 211 11 3566677766543 57788889887778888774 688888777
Q ss_pred HHHHHHH
Q psy10958 157 PKLLEEL 163 (321)
Q Consensus 157 p~~l~~l 163 (321)
-++...+
T Consensus 231 T~i~~a~ 237 (281)
T PRK06806 231 TATFNSV 237 (281)
T ss_pred HHHHHHH
Confidence 7766643
No 60
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=88.50 E-value=11 Score=37.49 Aligned_cols=123 Identities=18% Similarity=0.263 Sum_probs=84.1
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH-HHHHHHHHHhhCceeeeeeccC---HHHHHHHHHhcCc
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG-IQAAKVLESEYGIHCNLTLLFA---FAQAVACAEAGVT 101 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG-i~A~~~L~~~~GI~vn~TlvFS---~~Qa~aaa~Aga~ 101 (321)
|.+..++++.++-++.|.++ ||+ .|=+=+|+..+. .++++.+.+. |.++.++. ++ ..-...+.++|+.
T Consensus 19 ~~~~~s~e~k~~ia~~L~~~----GV~--~IE~G~p~~~~~~~e~i~~i~~~-~~~~~i~~-~~r~~~~di~~a~~~g~~ 90 (378)
T PRK11858 19 PGVVFTNEEKLAIARMLDEI----GVD--QIEAGFPAVSEDEKEAIKAIAKL-GLNASILA-LNRAVKSDIDASIDCGVD 90 (378)
T ss_pred CCCCCCHHHHHHHHHHHHHh----CCC--EEEEeCCCcChHHHHHHHHHHhc-CCCeEEEE-EcccCHHHHHHHHhCCcC
Confidence 34678898888888888876 775 777778976654 5888888875 77765443 34 5566778888998
Q ss_pred eeecCC------------CCCCCchHHHHHHHHHHHhcCCceEEee--cccCCHhHHHH------HhCCCeEEeC
Q psy10958 102 LISPYA------------PTEDPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILA------LAGCDLMTIG 156 (321)
Q Consensus 102 ~iSpf~------------~~~d~Gi~~v~~i~~~~~~~~~~T~vl~--AS~r~~~~v~~------LaG~d~vTip 156 (321)
.+..|. ...+..+..+..+.++.+..|+...+-. ++--+.+++.+ -+|++.|.++
T Consensus 91 ~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 91 AVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 776661 1112346777888889999998766532 33345666655 2688887654
No 61
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=88.48 E-value=6.5 Score=38.77 Aligned_cols=97 Identities=21% Similarity=0.143 Sum_probs=73.0
Q ss_pred HHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC---CCCCC---CchHHHHHHHHHHHhcCCceEEeec-ccCCH
Q psy10958 69 AAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY---APTED---PGVVSVTKIYNYYKKFGYKTVVMGA-SFRNT 141 (321)
Q Consensus 69 A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf---~~~~d---~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~ 141 (321)
.++.|.+.-++++-+--+.+.+-+..|.++|++.|..- ++.-| +.+..+.++++.++..+-+..|++. ++|+-
T Consensus 204 ~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G 283 (344)
T cd02922 204 DIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRG 283 (344)
T ss_pred HHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCH
Confidence 45555554468888888999999999999999977655 33323 3456677777777666545556655 59999
Q ss_pred hHHHH--HhCCCeEEeCHHHHHHHhc
Q psy10958 142 GEILA--LAGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 142 ~~v~~--LaG~d~vTipp~~l~~l~~ 165 (321)
.+|.. ..|++.+-|.-.+|..+..
T Consensus 284 ~Dv~kalaLGA~aV~iG~~~l~~l~~ 309 (344)
T cd02922 284 TDVLKALCLGAKAVGLGRPFLYALSA 309 (344)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHhh
Confidence 99987 4799999999999888865
No 62
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=88.42 E-value=11 Score=38.29 Aligned_cols=118 Identities=23% Similarity=0.338 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEec--CCHHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCcee----ec
Q psy10958 33 DASIAKAKKYIKMYEEAGIDKERILIKLA--STWEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLI----SP 105 (321)
Q Consensus 33 e~~i~~A~~L~~~~~~~gi~~~nv~IKIP--aT~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~i----Sp 105 (321)
+...+++..|++. |++ -|.|-.. -+..-++.++.+++.+ .+.+-+--+.|.+++..+.++|+++| .|
T Consensus 223 ~~~~~r~~~L~~a----G~d--~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~ 296 (450)
T TIGR01302 223 EFDKERAEALVKA----GVD--VIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGP 296 (450)
T ss_pred hhHHHHHHHHHHh----CCC--EEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCC
Confidence 4567788888875 443 5555542 3344677888888763 67777778999999999999999976 45
Q ss_pred C----CCC----CCCchHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 106 Y----APT----EDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 106 f----~~~----~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~ 158 (321)
= .+. +.|.+..+.++.++.++++ ..|++. .+|+..+|.. .+|++.+-+.-.
T Consensus 297 G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~--vpviadGGi~~~~di~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 297 GSICTTRIVAGVGVPQITAVYDVAEYAAQSG--IPVIADGGIRYSGDIVKALAAGADAVMLGSL 358 (450)
T ss_pred CcCCccceecCCCccHHHHHHHHHHHHhhcC--CeEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 3 232 2355666666766666554 334443 6999999987 379999987765
No 63
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=88.26 E-value=6.5 Score=39.41 Aligned_cols=102 Identities=12% Similarity=0.158 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC---CCCCCCchHHHHHHHHHHHhcCCceEEeec-c
Q psy10958 62 STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY---APTEDPGVVSVTKIYNYYKKFGYKTVVMGA-S 137 (321)
Q Consensus 62 aT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf---~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S 137 (321)
.||+=|+-++.. -+.++-+--|.|.+.|..|.++|++.|-.= ++..+..+..+..+.+..+..+.+..|++. .
T Consensus 232 ltW~di~~lr~~---~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGG 308 (381)
T PRK11197 232 ISWKDLEWIRDF---WDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSG 308 (381)
T ss_pred CCHHHHHHHHHh---CCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCC
Confidence 455555555544 368899999999999999999999865433 344443333444443333344445556665 5
Q ss_pred cCCHhHHHH-H-hCCCeEEeCHHHHHHHhcC
Q psy10958 138 FRNTGEILA-L-AGCDLMTIGPKLLEELENS 166 (321)
Q Consensus 138 ~r~~~~v~~-L-aG~d~vTipp~~l~~l~~~ 166 (321)
+|+-.+|.. | .|++.+-+.-.++..+...
T Consensus 309 Ir~g~Di~KALaLGA~~V~iGr~~l~~la~~ 339 (381)
T PRK11197 309 IRNGLDVVRMIALGADTVLLGRAFVYALAAA 339 (381)
T ss_pred cCcHHHHHHHHHcCcCceeEhHHHHHHHHhc
Confidence 999999987 3 6999999999999998763
No 64
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=88.15 E-value=12 Score=33.22 Aligned_cols=108 Identities=26% Similarity=0.337 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhC-ceeeeeeccCHHHHHHHHHhcCcee-ecC
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYG-IHCNLTLLFAFAQAVACAEAGVTLI-SPY 106 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~G-I~vn~TlvFS~~Qa~aaa~Aga~~i-Spf 106 (321)
..+.+..++.++.+.+. |++ .+-|-. .++..++.++.+.++++ +.+.+..+.+..|...|.++|++++ +|-
T Consensus 12 ~~~~~~~~~~~~~l~~~----G~~--~vev~~-~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~ 84 (190)
T cd00452 12 GDDAEDALALAEALIEG----GIR--AIEITL-RTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG 84 (190)
T ss_pred cCCHHHHHHHHHHHHHC----CCC--EEEEeC-CChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC
Confidence 45777888888877764 664 444433 24557788888887653 7888889999999999999999866 332
Q ss_pred CCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEe
Q psy10958 107 APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 155 (321)
Q Consensus 107 ~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTi 155 (321)
.+ ..+.++.+.++.+ .+.+.+ +..++.. -.|+|++-+
T Consensus 85 ---~~------~~~~~~~~~~~~~-~i~gv~--t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 85 ---LD------PEVVKAANRAGIP-LLPGVA--TPTEIMQALELGADIVKL 123 (190)
T ss_pred ---CC------HHHHHHHHHcCCc-EECCcC--CHHHHHHHHHCCCCEEEE
Confidence 12 2344444444433 233444 8888876 479999854
No 65
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=86.67 E-value=11 Score=33.27 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEe--cCC-HHHHHHHHHHHHh-hCceeeeeeccC-H--HHHHHHHHhcCcee
Q psy10958 31 DKDASIAKAKKYIKMYEEAGIDKERILIKL--AST-WEGIQAAKVLESE-YGIHCNLTLLFA-F--AQAVACAEAGVTLI 103 (321)
Q Consensus 31 d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI--PaT-~eGi~A~~~L~~~-~GI~vn~TlvFS-~--~Qa~aaa~Aga~~i 103 (321)
|.+..++-++.+.+. ++ .||| |.. ..|++.++.+.+. .++++-+.+.+. . .++..++++|++++
T Consensus 11 ~~~~~~~~~~~l~~~-----i~----~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i 81 (202)
T cd04726 11 DLEEALELAKKVPDG-----VD----IIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIV 81 (202)
T ss_pred CHHHHHHHHHHhhhc-----CC----EEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEE
Confidence 566555555555542 22 4787 442 3578889888864 267776653322 2 36788999999977
Q ss_pred ec-CCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEe
Q psy10958 104 SP-YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 155 (321)
Q Consensus 104 Sp-f~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTi 155 (321)
.. +.. +......+.++.+++|.+.-+-..+..+..++.. ..|+|.+.+
T Consensus 82 ~~h~~~----~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 82 TVLGAA----PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred EEEeeC----CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 63 321 2245677888888877554432235556666655 359999866
No 66
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=86.36 E-value=19 Score=33.56 Aligned_cols=123 Identities=18% Similarity=0.207 Sum_probs=78.3
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH-HHHHHHHHHHhhCceeeee-ec-cCHHHHHHHHHhcCcee
Q psy10958 27 RLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE-GIQAAKVLESEYGIHCNLT-LL-FAFAQAVACAEAGVTLI 103 (321)
Q Consensus 27 ~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e-Gi~A~~~L~~~~GI~vn~T-lv-FS~~Qa~aaa~Aga~~i 103 (321)
.+..+++..++-++.|.+. ||+ .|-+=+|...+ -.+.++.+.+. +-++.++ ++ ........+.++|++.+
T Consensus 14 ~~~~~~~~k~~i~~~L~~~----Gv~--~iE~g~p~~~~~~~e~~~~l~~~-~~~~~~~~~~r~~~~~v~~a~~~g~~~i 86 (259)
T cd07939 14 GVAFSREEKLAIARALDEA----GVD--EIEVGIPAMGEEEREAIRAIVAL-GLPARLIVWCRAVKEDIEAALRCGVTAV 86 (259)
T ss_pred CCCCCHHHHHHHHHHHHHc----CCC--EEEEecCCCCHHHHHHHHHHHhc-CCCCEEEEeccCCHHHHHHHHhCCcCEE
Confidence 3567888888887777775 665 67777786643 24677777753 3233222 23 45677778889999877
Q ss_pred ecCC------------CCCCCchHHHHHHHHHHHhcCCceEEe--ecccCCHhHHHHH------hCCCeEEeC
Q psy10958 104 SPYA------------PTEDPGVVSVTKIYNYYKKFGYKTVVM--GASFRNTGEILAL------AGCDLMTIG 156 (321)
Q Consensus 104 Spf~------------~~~d~Gi~~v~~i~~~~~~~~~~T~vl--~AS~r~~~~v~~L------aG~d~vTip 156 (321)
..|. +..+..+..++.+.++.++.|+.+.+- -++--+++++.++ +|+|.++++
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 6661 111234677888889999999876422 2233446666542 588887664
No 67
>PLN02979 glycolate oxidase
Probab=86.04 E-value=13 Score=37.21 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC---CCCCCCchHHHHHHHHHHHhcCCceEEeec-c
Q psy10958 62 STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY---APTEDPGVVSVTKIYNYYKKFGYKTVVMGA-S 137 (321)
Q Consensus 62 aT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf---~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S 137 (321)
.||+=|+-++.. -++++-+=-|.+.+.|..|.++|++.|-.= +|.-|.+...+..+.++-+..+.+..|+.. .
T Consensus 210 ltW~dl~wlr~~---~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGG 286 (366)
T PLN02979 210 LSWKDVQWLQTI---TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGG 286 (366)
T ss_pred CCHHHHHHHHhc---cCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCC
Confidence 567655555543 378999999999999999999999865443 454454444444444443433444555554 5
Q ss_pred cCCHhHHHH-H-hCCCeEEeCHHHHHHHhcC
Q psy10958 138 FRNTGEILA-L-AGCDLMTIGPKLLEELENS 166 (321)
Q Consensus 138 ~r~~~~v~~-L-aG~d~vTipp~~l~~l~~~ 166 (321)
+|+-.+|.. | .|+|.+-+.-..+-.+...
T Consensus 287 Ir~G~Di~KALALGAdaV~iGrp~L~~la~~ 317 (366)
T PLN02979 287 VRRGTDVFKALALGASGIFIGRPVVFSLAAE 317 (366)
T ss_pred cCcHHHHHHHHHcCCCEEEEcHHHHHHHHhc
Confidence 999998887 4 7999999999999887763
No 68
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.77 E-value=9.2 Score=36.61 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=63.7
Q ss_pred HHHHHHHHhhC-ceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH
Q psy10958 68 QAAKVLESEYG-IHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA 146 (321)
Q Consensus 68 ~A~~~L~~~~G-I~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~ 146 (321)
++++++++..+ ..--..-+=|++|+..|+++|+++|. .+++....++++.++.+....+..+.++.=-+.+.+.+
T Consensus 170 ~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~----LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ 245 (273)
T PRK05848 170 EFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVM----CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINA 245 (273)
T ss_pred HHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEE----ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHH
Confidence 56677765433 23335577799999999999999886 67788899999998765444455666654239999998
Q ss_pred H--hCCCeEEeCHH
Q psy10958 147 L--AGCDLMTIGPK 158 (321)
Q Consensus 147 L--aG~d~vTipp~ 158 (321)
. .|+|.+.++.-
T Consensus 246 ya~~GvD~IsvG~l 259 (273)
T PRK05848 246 YAKSGVDAISSGSL 259 (273)
T ss_pred HHHcCCCEEEeChh
Confidence 4 69999877654
No 69
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=85.72 E-value=18 Score=35.70 Aligned_cols=123 Identities=18% Similarity=0.217 Sum_probs=81.1
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH-HHHHHHHHHhhCceeeeee-c-cCHHHHHHHHHhcCcee
Q psy10958 27 RLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG-IQAAKVLESEYGIHCNLTL-L-FAFAQAVACAEAGVTLI 103 (321)
Q Consensus 27 ~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG-i~A~~~L~~~~GI~vn~Tl-v-FS~~Qa~aaa~Aga~~i 103 (321)
....+++..++-++.|.++ ||+ .|-+=+|+..+. .++++.+.+. +-++.++. + ........+.++|+..+
T Consensus 17 ~~~~s~~~k~~ia~~L~~~----Gv~--~IEvG~p~~~~~~~e~i~~i~~~-~~~~~i~~~~r~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 17 GVAFTAAEKLAIARALDEA----GVD--ELEVGIPAMGEEERAVIRAIVAL-GLPARLMAWCRARDADIEAAARCGVDAV 89 (365)
T ss_pred CCCCCHHHHHHHHHHHHHc----CCC--EEEEeCCCCCHHHHHHHHHHHHc-CCCcEEEEEcCCCHHHHHHHHcCCcCEE
Confidence 3567888888888888775 665 777778986654 5888888765 44333332 2 34666667888899877
Q ss_pred ecCC------------CCCCCchHHHHHHHHHHHhcCCceEEee--cccCCHhHHHHH------hCCCeEEeC
Q psy10958 104 SPYA------------PTEDPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILAL------AGCDLMTIG 156 (321)
Q Consensus 104 Spf~------------~~~d~Gi~~v~~i~~~~~~~~~~T~vl~--AS~r~~~~v~~L------aG~d~vTip 156 (321)
..|. ...+..+..+.++.++.+++|+...+-. ++-.+++++.++ +|+|.++++
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~ 162 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFA 162 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEc
Confidence 7771 1112356777888889999987755432 233456666652 688877654
No 70
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=85.35 E-value=17 Score=32.25 Aligned_cols=97 Identities=11% Similarity=0.022 Sum_probs=63.2
Q ss_pred ecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccC
Q psy10958 60 LASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFR 139 (321)
Q Consensus 60 IPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r 139 (321)
.|.+-.-+. +..+.. |+++-. .+.|++|+..|.++|++|+..|.... .|...++.+... -.+..+++..=-
T Consensus 82 ~p~~~~~~~--~~~~~~-~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~~~-~g~~~~~~l~~~----~~~~p~~a~GGI 152 (190)
T cd00452 82 SPGLDPEVV--KAANRA-GIPLLP-GVATPTEIMQALELGADIVKLFPAEA-VGPAYIKALKGP----FPQVRFMPTGGV 152 (190)
T ss_pred cCCCCHHHH--HHHHHc-CCcEEC-CcCCHHHHHHHHHCCCCEEEEcCCcc-cCHHHHHHHHhh----CCCCeEEEeCCC
Confidence 565554332 233323 777654 66699999999999999999984222 266666555333 223566666434
Q ss_pred CHhHHHH--HhCCCeEEeCHHHHHHHhc
Q psy10958 140 NTGEILA--LAGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 140 ~~~~v~~--LaG~d~vTipp~~l~~l~~ 165 (321)
+.+.+.+ .+|++.+.+...+.+.+..
T Consensus 153 ~~~n~~~~~~~G~~~v~v~s~i~~~~~~ 180 (190)
T cd00452 153 SLDNAAEWLAAGVVAVGGGSLLPKDAVA 180 (190)
T ss_pred CHHHHHHHHHCCCEEEEEchhcchhhhh
Confidence 8888877 3799999888877655443
No 71
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.57 E-value=14 Score=35.35 Aligned_cols=121 Identities=11% Similarity=0.017 Sum_probs=75.5
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHH-------------HHcCCC--CCceEEEecC------
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMY-------------EEAGID--KERILIKLAS------ 62 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~-------------~~~gi~--~~nv~IKIPa------ 62 (321)
.+.++.+.+.+.++-+|++-+.|.+ |.+.+.+-|+.+.+.. ....|+ +.+..+.-..
T Consensus 144 ~~~~i~~~v~~~~~iPv~vKl~p~~--~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~S 221 (294)
T cd04741 144 ATLEYLTAVKAAYSIPVGVKTPPYT--DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLA 221 (294)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcC
Confidence 4667777777777789999999864 5555655555554320 000123 2222221010
Q ss_pred ----CHHHHHHHHHHHHhhC--ceeeee-eccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHh
Q psy10958 63 ----TWEGIQAAKVLESEYG--IHCNLT-LLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKK 126 (321)
Q Consensus 63 ----T~eGi~A~~~L~~~~G--I~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~ 126 (321)
.|..++.++++.+..+ |++-.. -|+|.++++.+..|||+.+..+...-.-|-..++++.+.+++
T Consensus 222 G~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 222 GAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 3345788888876543 888776 599999999999999999988843222233456666655554
No 72
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=84.11 E-value=13 Score=38.07 Aligned_cols=105 Identities=23% Similarity=0.218 Sum_probs=67.4
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHH-HHHHHHHHHHhh----CceeeeeeccCH
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWE-GIQAAKVLESEY----GIHCNLTLLFAF 89 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~e-Gi~A~~~L~~~~----GI~vn~TlvFS~ 89 (321)
+.++...+|+ ++.+..++-|+++.+. |+ ++|+||=. .||. --.-++.|++.. ++++.-|.=.++
T Consensus 141 ~~i~~t~~p~--~~~~~~~~~a~~l~~~----Ga--d~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~ 212 (448)
T PRK12331 141 VAISYTTSPV--HTIDYFVKLAKEMQEM----GA--DSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAE 212 (448)
T ss_pred EEEEeecCCC--CCHHHHHHHHHHHHHc----CC--CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHH
Confidence 5677777875 7888899999988775 55 47888733 1222 223344444332 566667888999
Q ss_pred HHHHHHHHhcCcee----ecCCCCCCCchHHHHHHHHHHHhcCCceE
Q psy10958 90 AQAVACAEAGVTLI----SPYAPTEDPGVVSVTKIYNYYKKFGYKTV 132 (321)
Q Consensus 90 ~Qa~aaa~Aga~~i----Spf~~~~d~Gi~~v~~i~~~~~~~~~~T~ 132 (321)
.-+++|++|||+++ +||+.. .|-.....+..+++..|++|.
T Consensus 213 AN~laAieaGad~vD~sv~glg~g--aGN~~tE~lv~~L~~~g~~tg 257 (448)
T PRK12331 213 MTYLKAIEAGADIIDTAISPFAGG--TSQPATESMVAALQDLGYDTG 257 (448)
T ss_pred HHHHHHHHcCCCEEEeeccccCCC--cCCHhHHHHHHHHHhcCCCCC
Confidence 99999999999754 677321 444444444555555555553
No 73
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=83.92 E-value=21 Score=34.21 Aligned_cols=123 Identities=12% Similarity=0.137 Sum_probs=79.0
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE-------ecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhc
Q psy10958 27 RLSFDKDASIAKAKKYIKMYEEAGIDKERILIK-------LASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAG 99 (321)
Q Consensus 27 ~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK-------IPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Ag 99 (321)
....++++.++-|+.|.+. ||+ .|=+= +|++..--++++.|.+..|..+.+ ++=....+..|.++|
T Consensus 20 ~~~~s~e~k~~ia~~L~~~----Gv~--~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~-l~~~~~~ie~A~~~g 92 (287)
T PRK05692 20 KRFIPTADKIALIDRLSAA----GLS--YIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAA-LTPNLKGLEAALAAG 92 (287)
T ss_pred CCCcCHHHHHHHHHHHHHc----CCC--EEEeCCCcCcccccccccHHHHHHhhhccCCCeEEE-EecCHHHHHHHHHcC
Confidence 4567899999988888876 665 55553 787554456666665432554432 334778888899999
Q ss_pred CceeecCC---------CCC---CCchHHHHHHHHHHHhcCCceEE--eec------ccCCHhHHHH------HhCCCeE
Q psy10958 100 VTLISPYA---------PTE---DPGVVSVTKIYNYYKKFGYKTVV--MGA------SFRNTGEILA------LAGCDLM 153 (321)
Q Consensus 100 a~~iSpf~---------~~~---d~Gi~~v~~i~~~~~~~~~~T~v--l~A------S~r~~~~v~~------LaG~d~v 153 (321)
++.+..|. ... +.-+..++++.++.+++|..+.. .-+ +--+++++.. -+|+|.|
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 172 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEI 172 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 98777771 111 13466788889999999876542 111 1124555554 2699988
Q ss_pred EeC
Q psy10958 154 TIG 156 (321)
Q Consensus 154 Tip 156 (321)
+++
T Consensus 173 ~l~ 175 (287)
T PRK05692 173 SLG 175 (287)
T ss_pred Eec
Confidence 664
No 74
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=83.90 E-value=15 Score=35.84 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=68.6
Q ss_pred HHHHHHHHhhCceeeeeec---cCHHHHHHHHHhcCceeecCCCCC---------------------CCchHHHHHHHHH
Q psy10958 68 QAAKVLESEYGIHCNLTLL---FAFAQAVACAEAGVTLISPYAPTE---------------------DPGVVSVTKIYNY 123 (321)
Q Consensus 68 ~A~~~L~~~~GI~vn~Tlv---FS~~Qa~aaa~Aga~~iSpf~~~~---------------------d~Gi~~v~~i~~~ 123 (321)
+.++.+.+..+++|-+-.+ ++.+-+..+.++|+++|...++.+ +-|+.....+++.
T Consensus 169 e~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~ 248 (333)
T TIGR02151 169 EKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEV 248 (333)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHH
Confidence 6777777654677766555 788899999999999887774321 1255556666665
Q ss_pred HHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHHHHHHHh
Q psy10958 124 YKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPKLLEELE 164 (321)
Q Consensus 124 ~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~l~~l~ 164 (321)
.+ ...+..|++. .+|+..++.. ..|||.+-+.-.+|..+.
T Consensus 249 ~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~ 291 (333)
T TIGR02151 249 RS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAAL 291 (333)
T ss_pred Hh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHH
Confidence 44 2234555554 5999999987 379999999999998886
No 75
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=83.89 E-value=16 Score=36.40 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCcee--ecC-CCCCCCc---hHHHHHHHHHHHhcCCceEEee
Q psy10958 62 STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLI--SPY-APTEDPG---VVSVTKIYNYYKKFGYKTVVMG 135 (321)
Q Consensus 62 aT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~i--Spf-~~~~d~G---i~~v~~i~~~~~~~~~~T~vl~ 135 (321)
.||+=|+.++.. -++++.+=.|.+.+-|..|.++|++.| |-- +|..+.+ +..+.++.+. .+.+..|++
T Consensus 215 ~~w~~i~~l~~~---~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~a---v~~~i~vi~ 288 (367)
T TIGR02708 215 LSPRDIEEIAGY---SGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEA---VDKRVPIVF 288 (367)
T ss_pred CCHHHHHHHHHh---cCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHH---hCCCCcEEe
Confidence 567655555443 378999999999999999999999955 555 4444433 3444444433 333444554
Q ss_pred -cccCCHhHHHH--HhCCCeEEeCHHHHHHHhcC
Q psy10958 136 -ASFRNTGEILA--LAGCDLMTIGPKLLEELENS 166 (321)
Q Consensus 136 -AS~r~~~~v~~--LaG~d~vTipp~~l~~l~~~ 166 (321)
-.+|+..+|.. ..|+|.+-|.-..|..|...
T Consensus 289 dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~ 322 (367)
T TIGR02708 289 DSGVRRGQHVFKALASGADLVALGRPVIYGLALG 322 (367)
T ss_pred eCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhc
Confidence 45999988886 37999999999999998764
No 76
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=83.74 E-value=35 Score=32.23 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE---------Ee----c--------
Q psy10958 3 KLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI---------KL----A-------- 61 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I---------KI----P-------- 61 (321)
+++.++.+.+.+.++-+|++-++|.+ +++.+-|+.+.+ .|++ -+.+ -. |
T Consensus 140 ~~~~eiv~~vr~~~~~Pv~vKl~~~~----~~~~~~a~~~~~----~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg 209 (296)
T cd04740 140 EAVAEIVKAVKKATDVPVIVKLTPNV----TDIVEIARAAEE----AGAD--GLTLINTLKGMAIDIETRKPILGNVTGG 209 (296)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCCc----hhHHHHHHHHHH----cCCC--EEEEECCCcccccccccCceeecCCcce
Confidence 35567777777777778999987743 334444444433 3443 1111 00 1
Q ss_pred ----C-CHHHHHHHHHHHHhhCceeeee-eccCHHHHHHHHHhcCceeecC-CCCCCCch--HHHHHHHHHHHhcCCc
Q psy10958 62 ----S-TWEGIQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAGVTLISPY-APTEDPGV--VSVTKIYNYYKKFGYK 130 (321)
Q Consensus 62 ----a-T~eGi~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf-~~~~d~Gi--~~v~~i~~~~~~~~~~ 130 (321)
+ .+-.++.++++.+..+|++-++ -|++.+.+..+.++||+.++.. ....+|.+ ...+.+.++++++|++
T Consensus 210 ~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~ 287 (296)
T cd04740 210 LSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIK 287 (296)
T ss_pred ecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCC
Confidence 0 1224677888876547777765 7889999999999999999888 33345542 3334556666777654
No 77
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=83.50 E-value=36 Score=33.13 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=68.0
Q ss_pred HHHHHHHHhhCceeeeeec---cCHHHHHHHHHhcCceeecCC------------CC-----------CCCchHHHHHHH
Q psy10958 68 QAAKVLESEYGIHCNLTLL---FAFAQAVACAEAGVTLISPYA------------PT-----------EDPGVVSVTKIY 121 (321)
Q Consensus 68 ~A~~~L~~~~GI~vn~Tlv---FS~~Qa~aaa~Aga~~iSpf~------------~~-----------~d~Gi~~v~~i~ 121 (321)
..++.+.+...+++-+-.+ .|..-+..+.++|+++|-.-+ |. .+-|+..+..+.
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~ 247 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLL 247 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHH
Confidence 6677777644677777666 888999999999998765431 11 112555555555
Q ss_pred HHHHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHHHHHHHhc
Q psy10958 122 NYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 122 ~~~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~l~~l~~ 165 (321)
+..+... +..|++. .+|+..++.. ..|+|.+.+.-.+|..+..
T Consensus 248 ~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~ 293 (326)
T cd02811 248 EVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE 293 (326)
T ss_pred HHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc
Confidence 5544332 4445554 5999999997 4799999999999998866
No 78
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=83.38 E-value=25 Score=36.18 Aligned_cols=117 Identities=18% Similarity=0.307 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEec-CCHH-HHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCceeec-C---
Q psy10958 34 ASIAKAKKYIKMYEEAGIDKERILIKLA-STWE-GIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLISP-Y--- 106 (321)
Q Consensus 34 ~~i~~A~~L~~~~~~~gi~~~nv~IKIP-aT~e-Gi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~iSp-f--- 106 (321)
...+.++.|++. |++ -++|..+ .... =+..++.+.+++ ++++-+--+.|.+++..+.++|+++|.. +
T Consensus 228 ~~~e~a~~L~~a----gvd--vivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~g 301 (486)
T PRK05567 228 DNEERAEALVEA----GVD--VLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPG 301 (486)
T ss_pred chHHHHHHHHHh----CCC--EEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 447788888875 443 4555543 2222 366788888765 6888889999999999999999998743 2
Q ss_pred ----CCC-CC---CchHHHHHHHHHHHhcCCceEEee-cccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 107 ----APT-ED---PGVVSVTKIYNYYKKFGYKTVVMG-ASFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 107 ----~~~-~d---~Gi~~v~~i~~~~~~~~~~T~vl~-AS~r~~~~v~~--LaG~d~vTipp~ 158 (321)
.|. .. |-..++.++.+..+++ ...|++ -.+|+..++.. .+|+|.+.+.-.
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~~~~--~~~viadGGi~~~~di~kAla~GA~~v~~G~~ 362 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAAKKY--GIPVIADGGIRYSGDIAKALAAGASAVMLGSM 362 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHhccC--CCeEEEcCCCCCHHHHHHHHHhCCCEEEECcc
Confidence 121 12 3344555555544433 334444 36999999997 479999987755
No 79
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=83.32 E-value=26 Score=33.26 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=73.1
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE--ec-------------CCH----
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK--LA-------------STW---- 64 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK--IP-------------aT~---- 64 (321)
++.++.+++.+..+-+|++-++| +.+++++-|+.+. +.|++ -+.|= ++ .++
T Consensus 144 ~~~eiv~~vr~~~~~pv~vKi~~----~~~~~~~~a~~l~----~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~ 213 (300)
T TIGR01037 144 LSADVVKAVKDKTDVPVFAKLSP----NVTDITEIAKAAE----EAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGL 213 (300)
T ss_pred HHHHHHHHHHHhcCCCEEEECCC----ChhhHHHHHHHHH----HcCCC--EEEEEccCCccccccccCceeeCCCCccc
Confidence 56677778877777789988876 3445555554443 34554 23220 00 011
Q ss_pred -------HHHHHHHHHHHhhCceeeee-eccCHHHHHHHHHhcCceeecC-CCCCCCc--hHHHHHHHHHHHhcCCc
Q psy10958 65 -------EGIQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAGVTLISPY-APTEDPG--VVSVTKIYNYYKKFGYK 130 (321)
Q Consensus 65 -------eGi~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf-~~~~d~G--i~~v~~i~~~~~~~~~~ 130 (321)
-.+..++++.+..+|++-+. -|+|.+++..+..+||+.+... ....+|. -...+.+.+++.++||+
T Consensus 214 sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 214 SGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 12567777776447887754 7899999999999999988877 3333442 23445566666677654
No 80
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=82.98 E-value=10 Score=36.14 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=62.3
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe-------cCCHH-----HHHHHHHHHHhhCceeeeee
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL-------ASTWE-----GIQAAKVLESEYGIHCNLTL 85 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI-------PaT~e-----Gi~A~~~L~~~~GI~vn~Tl 85 (321)
|++.+=+-|...+|.+.+++-|++|.++ | -.++.|= |-+|. |++.++++..+.|+.+ +|-
T Consensus 26 ~~~~~iaGPCsie~~~~~~~~A~~lk~~----g---~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~-~te 97 (266)
T PRK13398 26 EEKIIIAGPCAVESEEQMVKVAEKLKEL----G---VHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPV-VTE 97 (266)
T ss_pred CCEEEEEeCCcCCCHHHHHHHHHHHHHc----C---CCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCE-EEe
Confidence 5788889999999999999999999986 3 3466665 55554 6888888887789999 889
Q ss_pred ccCHHHHHHHHHhcCce
Q psy10958 86 LFAFAQAVACAEAGVTL 102 (321)
Q Consensus 86 vFS~~Qa~aaa~Aga~~ 102 (321)
+|+..++..+++. +++
T Consensus 98 ~~d~~~~~~l~~~-vd~ 113 (266)
T PRK13398 98 VMDTRDVEEVADY-ADM 113 (266)
T ss_pred eCChhhHHHHHHh-CCE
Confidence 9999999999886 553
No 81
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=82.75 E-value=26 Score=34.77 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=76.1
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH-------HHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHh
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW-------EGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEA 98 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~-------eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~A 98 (321)
|....++++-++-++.|.++ ||+ .|=+=-|+.+ .--++++.+....+..+. .++-.......|.++
T Consensus 61 ~g~~~s~e~Ki~ia~~L~~~----GV~--~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~-~l~~n~~die~A~~~ 133 (347)
T PLN02746 61 EKNIVPTSVKVELIQRLVSS----GLP--VVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFP-VLTPNLKGFEAAIAA 133 (347)
T ss_pred CCCCCCHHHHHHHHHHHHHc----CCC--EEEECCCcCcccccccccHHHHHHHHHhccCCcee-EEcCCHHHHHHHHHc
Confidence 44567888888888888875 665 5544433332 322334444331144432 234488999999999
Q ss_pred cCceeecC------------CCCCCCchHHHHHHHHHHHhcCCceEE-ee-------cccCCHhHHHH------HhCCCe
Q psy10958 99 GVTLISPY------------APTEDPGVVSVTKIYNYYKKFGYKTVV-MG-------ASFRNTGEILA------LAGCDL 152 (321)
Q Consensus 99 ga~~iSpf------------~~~~d~Gi~~v~~i~~~~~~~~~~T~v-l~-------AS~r~~~~v~~------LaG~d~ 152 (321)
|+..+..| ++.....+..+.++.++.+++|...++ +. ++--+++++.+ -+|+|.
T Consensus 134 g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~ 213 (347)
T PLN02746 134 GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYE 213 (347)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCE
Confidence 99887777 111124567777899999999987651 21 12235666655 269888
Q ss_pred EEeC
Q psy10958 153 MTIG 156 (321)
Q Consensus 153 vTip 156 (321)
|+++
T Consensus 214 I~l~ 217 (347)
T PLN02746 214 ISLG 217 (347)
T ss_pred EEec
Confidence 7653
No 82
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=82.62 E-value=16 Score=33.07 Aligned_cols=124 Identities=19% Similarity=0.126 Sum_probs=75.8
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee----------ecc-
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT----------LLF- 87 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T----------lvF- 87 (321)
-||-|+- ..|+=.....+..+.+.+.+.|+. .+.+ .+++.+++++... ++++... .++
T Consensus 8 ~~~~~~~---~~~~~~~~~~~~~~a~a~~~~G~~----~~~~-~~~~~i~~i~~~~---~~Pil~~~~~d~~~~~~~~~~ 76 (221)
T PRK01130 8 IVSCQAL---PGEPLHSPEIMAAMALAAVQGGAV----GIRA-NGVEDIKAIRAVV---DVPIIGIIKRDYPDSEVYITP 76 (221)
T ss_pred EEEecCC---CCCCCCCHHHHHHHHHHHHHCCCe----EEEc-CCHHHHHHHHHhC---CCCEEEEEecCCCCCCceECC
Confidence 4788873 345544455566666666655653 3444 4677777777654 4665311 111
Q ss_pred CHHHHHHHHHhcCceeecCCCCC-CCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEe
Q psy10958 88 AFAQAVACAEAGVTLISPYAPTE-DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 155 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~iSpf~~~~-d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTi 155 (321)
+.+|+..|.++|++++.|-.... .|.-....++.+..+++ ....++ +...+.+++.. -.|+|++.+
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi-~~v~t~ee~~~a~~~G~d~i~~ 145 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLM-ADCSTLEEGLAAQKLGFDFIGT 145 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEE-EeCCCHHHHHHHHHcCCCEEEc
Confidence 35799999999999888864332 22224556777777774 333333 45667777765 379998844
No 83
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=82.55 E-value=34 Score=32.65 Aligned_cols=127 Identities=14% Similarity=0.170 Sum_probs=80.6
Q ss_pred cCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec-CCHHHHHHHHHHHHhh---C-c-eeeee-eccCHHHHHHHHH
Q psy10958 25 DARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA-STWEGIQAAKVLESEY---G-I-HCNLT-LLFAFAQAVACAE 97 (321)
Q Consensus 25 ~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP-aT~eGi~A~~~L~~~~---G-I-~vn~T-lvFS~~Qa~aaa~ 97 (321)
+|....++++-++-++.|.+. .||+ .|=+=-| .+++=.++++++.+.. | + ++.++ ++=.......|.+
T Consensus 11 ~~~~~~s~e~K~~i~~~L~~~---~Gv~--~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~ 85 (280)
T cd07945 11 TSGVSFSPSEKLNIAKILLQE---LKVD--RIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKS 85 (280)
T ss_pred CCCCccCHHHHHHHHHHHHHH---hCCC--EEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHH
Confidence 355678899999988887432 2665 6777778 6776678888876420 1 1 12222 3334455667778
Q ss_pred hcCceeecC------------CCCCCCchHHHHHHHHHHHhcCCceEEeec----ccC-CHhHHHHH------hCCCeEE
Q psy10958 98 AGVTLISPY------------APTEDPGVVSVTKIYNYYKKFGYKTVVMGA----SFR-NTGEILAL------AGCDLMT 154 (321)
Q Consensus 98 Aga~~iSpf------------~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A----S~r-~~~~v~~L------aG~d~vT 154 (321)
+|+..+..| ++.-+.-+..++++.++.+.+|+...+-.. .+| +++++.++ +|++.|+
T Consensus 86 ~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~ 165 (280)
T cd07945 86 AGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIM 165 (280)
T ss_pred CCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEE
Confidence 899877666 112234567788888999999987654443 234 46666552 5888876
Q ss_pred eC
Q psy10958 155 IG 156 (321)
Q Consensus 155 ip 156 (321)
++
T Consensus 166 l~ 167 (280)
T cd07945 166 LP 167 (280)
T ss_pred ec
Confidence 53
No 84
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=82.21 E-value=23 Score=35.41 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCcee--ecC-CCCCCCchHHHHHHHHHHHhcCCceEEee-c
Q psy10958 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLI--SPY-APTEDPGVVSVTKIYNYYKKFGYKTVVMG-A 136 (321)
Q Consensus 61 PaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~i--Spf-~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~-A 136 (321)
+.||+=|+=++.. -++++-+=.|.+.+-|..|.++|++.| |-. +|.-|.+...+..+.++-+..+-+..|+. -
T Consensus 210 ~~tW~di~wlr~~---~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dG 286 (367)
T PLN02493 210 TLSWKDVQWLQTI---TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 286 (367)
T ss_pred CCCHHHHHHHHhc---cCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeC
Confidence 3566655555544 378999999999999999999999865 434 45555444444444444444343444554 4
Q ss_pred ccCCHhHHHH-H-hCCCeEEeCHHHHHHHhc
Q psy10958 137 SFRNTGEILA-L-AGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 137 S~r~~~~v~~-L-aG~d~vTipp~~l~~l~~ 165 (321)
.+|+-.+|.. | .|++.+-|.-..+-.+..
T Consensus 287 GIr~G~Dv~KALALGA~aV~iGr~~l~~l~~ 317 (367)
T PLN02493 287 GVRRGTDVFKALALGASGIFIGRPVVFSLAA 317 (367)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh
Confidence 5999988887 3 699999999999988776
No 85
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=81.81 E-value=2.4 Score=47.13 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCcceecccCC
Q psy10958 290 QTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
-+.+++|.|.+.+ +..+-.+|+||+|||||
T Consensus 84 di~~A~d~l~p~~--~~~~g~~G~VS~EV~P~ 113 (948)
T PRK09533 84 DIQAAADVLRPVY--DATDGADGFVSLEVSPY 113 (948)
T ss_pred HHHHHHHHHHHHH--HhcCCCCCeEEEEEecc
Confidence 4678999999999 88999999999999986
No 86
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=81.76 E-value=40 Score=31.82 Aligned_cols=123 Identities=18% Similarity=0.224 Sum_probs=80.3
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH-HHHHHHHHHhhCc--eeeeeeccCHHHHHHHHHhcCcee
Q psy10958 27 RLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG-IQAAKVLESEYGI--HCNLTLLFAFAQAVACAEAGVTLI 103 (321)
Q Consensus 27 ~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG-i~A~~~L~~~~GI--~vn~TlvFS~~Qa~aaa~Aga~~i 103 (321)
.+..+++..++-++.|.++ ||+ .|=+=-|.+-++ ..+++.+.+. +. .+-+-+.........|.++|++.|
T Consensus 16 ~~~~s~~~k~~i~~~L~~~----Gv~--~IEvG~P~~~~~~~~~~~~l~~~-~~~~~v~~~~r~~~~di~~a~~~g~~~i 88 (262)
T cd07948 16 NAFFDTEDKIEIAKALDAF----GVD--YIELTSPAASPQSRADCEAIAKL-GLKAKILTHIRCHMDDARIAVETGVDGV 88 (262)
T ss_pred CCCCCHHHHHHHHHHHHHc----CCC--EEEEECCCCCHHHHHHHHHHHhC-CCCCcEEEEecCCHHHHHHHHHcCcCEE
Confidence 3677888888888888875 665 555544776655 4466777643 43 332224667888889999999877
Q ss_pred ecCC---------CCC---CCchHHHHHHHHHHHhcCCceEEee-cccCCH-hHHHHH------hCCCeEEeC
Q psy10958 104 SPYA---------PTE---DPGVVSVTKIYNYYKKFGYKTVVMG-ASFRNT-GEILAL------AGCDLMTIG 156 (321)
Q Consensus 104 Spf~---------~~~---d~Gi~~v~~i~~~~~~~~~~T~vl~-AS~r~~-~~v~~L------aG~d~vTip 156 (321)
..|. ... ...+..+.++.++.+.+|+...+-. -+||.. +.+.++ +|++.++++
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 6661 111 2346667788889999998875543 356654 555442 588887653
No 87
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=81.63 E-value=23 Score=34.59 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=85.6
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.+...+.+-+|+.-+.+.+..++-++.|... + -.+|-=|..+..+...++|.+..+|++.+.
T Consensus 173 ~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~----~----i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E 244 (355)
T cd03321 173 LAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQE----G----LTWIEEPTLQHDYEGHARIASALRTPVQMGE 244 (355)
T ss_pred HHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcC----C----CCEEECCCCCcCHHHHHHHHHhcCCCEEEcC
Confidence 5667778877766688888888888888766666666442 2 347788887777777778876657888766
Q ss_pred eccCHHHHHHHHHhc-CceeecC-CCCCCCchHHHHHHHHHHHhcCCce
Q psy10958 85 LLFAFAQAVACAEAG-VTLISPY-APTEDPGVVSVTKIYNYYKKFGYKT 131 (321)
Q Consensus 85 lvFS~~Qa~aaa~Ag-a~~iSpf-~~~~d~Gi~~v~~i~~~~~~~~~~T 131 (321)
-+|+..+.....+.+ ++++.|- .+. =|+....++..+-+.+|.+.
T Consensus 245 ~~~~~~~~~~~i~~~~~d~i~~~~~~~--GGit~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 245 NWLGPEEMFKALSAGACDLVMPDLMKI--GGVTGWLRASALAEQAGIPM 291 (355)
T ss_pred CCcCHHHHHHHHHhCCCCeEecCHhhh--CCHHHHHHHHHHHHHcCCee
Confidence 468999999988876 4566554 222 37999999999999998764
No 88
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=81.61 E-value=37 Score=31.55 Aligned_cols=120 Identities=10% Similarity=0.135 Sum_probs=83.6
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.++..+.+-+|++-+.+.+..++-++.|... ++ .+|--|..+.-+...++|.+..++++-+.
T Consensus 116 ~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~i----~~iEeP~~~~d~~~~~~l~~~~~ipia~dE 187 (265)
T cd03315 116 VAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDL----GL----DYVEQPLPADDLEGRAALARATDTPIMADE 187 (265)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhc----CC----CEEECCCCcccHHHHHHHHhhCCCCEEECC
Confidence 4666777777765677778887788876666666555442 22 36788887766777777876557887665
Q ss_pred eccCHHHHHHHHHhc-CceeecCCCCCCCchHHHHHHHHHHHhcCCceEEe
Q psy10958 85 LLFAFAQAVACAEAG-VTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVM 134 (321)
Q Consensus 85 lvFS~~Qa~aaa~Ag-a~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl 134 (321)
-+++..+.....+.+ ++++.|= ..-.-|+.-..++.++-+.+|.++-+-
T Consensus 188 ~~~~~~~~~~~i~~~~~d~v~~k-~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 188 SAFTPHDAFRELALGAADAVNIK-TAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEe-cccccCHHHHHHHHHHHHHcCCcEEec
Confidence 578999998888776 4666552 112246888899999999998776553
No 89
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=81.48 E-value=15 Score=38.10 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=67.8
Q ss_pred CCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH-HHHHHHHHHh------hCceeeeee
Q psy10958 16 IPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG-IQAAKVLESE------YGIHCNLTL 85 (321)
Q Consensus 16 ~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG-i~A~~~L~~~------~GI~vn~Tl 85 (321)
..|.|+.-++|. +|.+..++-|+++.+. |+ +.|+||=. .||.- -.-++.|++. .++++.-|.
T Consensus 140 ~~~~i~yt~sp~--~t~e~~~~~a~~l~~~----Ga--d~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~ 211 (499)
T PRK12330 140 AQGTICYTVSPI--HTVEGFVEQAKRLLDM----GA--DSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTT 211 (499)
T ss_pred EEEEEEEecCCC--CCHHHHHHHHHHHHHc----CC--CEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCC
Confidence 346777788884 6899999999999875 55 47887733 23322 2223333332 257788888
Q ss_pred ccCHHHHHHHHHhcCcee----ecCCCCCCCchHHHHHHHHHHHhcCCceE
Q psy10958 86 LFAFAQAVACAEAGVTLI----SPYAPTEDPGVVSVTKIYNYYKKFGYKTV 132 (321)
Q Consensus 86 vFS~~Qa~aaa~Aga~~i----Spf~~~~d~Gi~~v~~i~~~~~~~~~~T~ 132 (321)
=.+..-+++|++|||+++ ++++ .-+|-.....+..+++..|++|.
T Consensus 212 GlA~An~laAieAGad~vDtai~Glg--~~aGn~atE~vv~~L~~~g~~tg 260 (499)
T PRK12330 212 GVTLVSLMKAIEAGVDVVDTAISSMS--LGPGHNPTESLVEMLEGTGYTTK 260 (499)
T ss_pred CcHHHHHHHHHHcCCCEEEeeccccc--ccccchhHHHHHHHHHhcCCCCC
Confidence 899999999999999865 4441 22333444444445555555543
No 90
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=81.20 E-value=36 Score=31.13 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=81.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH-------HHHHHHHHHHHhhCceeee-eeccC-HHHHHHHHHh
Q psy10958 28 LSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW-------EGIQAAKVLESEYGIHCNL-TLLFA-FAQAVACAEA 98 (321)
Q Consensus 28 la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~-------eGi~A~~~L~~~~GI~vn~-TlvFS-~~Qa~aaa~A 98 (321)
...+++..++-++.|.++ ||+ .|-+=-|... ...+.++.+.+. +-++.+ .++-+ ...+..+.++
T Consensus 14 ~~~s~e~~~~i~~~L~~~----GV~--~IEvg~~~~~~~~p~~~~~~~~i~~l~~~-~~~~~~~~l~~~~~~~i~~a~~~ 86 (265)
T cd03174 14 ATFSTEDKLEIAEALDEA----GVD--SIEVGSGASPKAVPQMEDDWEVLRAIRKL-VPNVKLQALVRNREKGIERALEA 86 (265)
T ss_pred CCCCHHHHHHHHHHHHHc----CCC--EEEeccCcCccccccCCCHHHHHHHHHhc-cCCcEEEEEccCchhhHHHHHhC
Confidence 456888888777777765 554 5666556554 567788888876 523333 23333 7888899999
Q ss_pred cCceeecCCCC-----------C-CCchHHHHHHHHHHHhcCCceEEee-ccc---CCHhHHHH------HhCCCeEEeC
Q psy10958 99 GVTLISPYAPT-----------E-DPGVVSVTKIYNYYKKFGYKTVVMG-ASF---RNTGEILA------LAGCDLMTIG 156 (321)
Q Consensus 99 ga~~iSpf~~~-----------~-d~Gi~~v~~i~~~~~~~~~~T~vl~-AS~---r~~~~v~~------LaG~d~vTip 156 (321)
|++.+..+... . +--+..+....++.+++|+...+-. ..+ .+.+++.+ -+|++.++++
T Consensus 87 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 87 GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 99888777211 1 1136777788888899998876655 344 45666654 2699988765
Q ss_pred H
Q psy10958 157 P 157 (321)
Q Consensus 157 p 157 (321)
.
T Consensus 167 D 167 (265)
T cd03174 167 D 167 (265)
T ss_pred h
Confidence 3
No 91
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=80.42 E-value=36 Score=33.94 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=74.9
Q ss_pred cEEEEec-CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHH
Q psy10958 19 RVSTEVD-ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAE 97 (321)
Q Consensus 19 ~Vs~EV~-p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~ 97 (321)
+|++|-- ..-..|++++++|.++|.+. +-+=|=|-+|.- +-.+|++.+.++..|++-+-.=|...-|+.|++
T Consensus 27 Pi~VQSMt~t~T~Dv~atv~Qi~~L~~a------GceiVRvav~~~-~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~ 99 (360)
T PRK00366 27 PIVVQSMTNTDTADVEATVAQIKRLARA------GCEIVRVAVPDM-EAAAALPEIKKQLPVPLVADIHFDYRLALAAAE 99 (360)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHc------CCCEEEEccCCH-HHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHH
Confidence 8999931 11356999999999999985 345566667654 446777777766578888889999999999999
Q ss_pred hcCceeecC-CCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 98 AGVTLISPY-APTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 98 Aga~~iSpf-~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
+|++-+-.- +..+. =-..++.+.+.-++++.+.+|
T Consensus 100 ~G~~~iRINPGNig~-~~~~v~~vv~~ak~~~ipIRI 135 (360)
T PRK00366 100 AGADALRINPGNIGK-RDERVREVVEAAKDYGIPIRI 135 (360)
T ss_pred hCCCEEEECCCCCCc-hHHHHHHHHHHHHHCCCCEEE
Confidence 999866333 22211 024566777777777666553
No 92
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=80.18 E-value=11 Score=37.34 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=63.8
Q ss_pred HHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHc----------CCCCCceEEEecCC------------HH
Q psy10958 8 FGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEA----------GIDKERILIKLAST------------WE 65 (321)
Q Consensus 8 ~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~----------gi~~~nv~IKIPaT------------~e 65 (321)
-.+.|+.+.+.+..+=+-|.-.+|.+..++-|++|.++.++. ++.+||--+.--.. .+
T Consensus 43 ~i~~Il~g~d~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~ 122 (353)
T PRK12755 43 AIADILHGRDDRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEE 122 (353)
T ss_pred HHHHHhcCCCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHH
Confidence 355677777889999999999999999999999999985431 22223322222222 58
Q ss_pred HHHHHHHH---HHhhCceeeeeeccCHHHHHHHHHh
Q psy10958 66 GIQAAKVL---ESEYGIHCNLTLLFAFAQAVACAEA 98 (321)
Q Consensus 66 Gi~A~~~L---~~~~GI~vn~TlvFS~~Qa~aaa~A 98 (321)
||+.+|+| ..+.|+++ +|-+..+.+....++.
T Consensus 123 GL~~~R~ll~~~~e~Glp~-atE~ld~~~~~y~~Dl 157 (353)
T PRK12755 123 GLRIARKLLLDLVELGLPL-ATEALDPISPQYLGDL 157 (353)
T ss_pred HHHHHHHHHHHHHHhCCCE-EEEecCcccHHHHHhh
Confidence 89998888 55569999 7777766666555553
No 93
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=79.92 E-value=32 Score=34.05 Aligned_cols=105 Identities=10% Similarity=0.145 Sum_probs=73.2
Q ss_pred cEEEEe--cCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHH
Q psy10958 19 RVSTEV--DARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACA 96 (321)
Q Consensus 19 ~Vs~EV--~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa 96 (321)
+|++|- +. -..|.+++++|.++|.+. +-+=|=|-+|.- +--+|++.+.+...|++-+-.=|....|+.|+
T Consensus 19 PI~VQSMtnt-~T~Dv~atv~QI~~L~~a------GceiVRvavp~~-~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~ 90 (346)
T TIGR00612 19 PIVVQSMTNT-DTIDIDSTVAQIRALEEA------GCDIVRVTVPDR-ESAAAFEAIKEGTNVPLVADIHFDYRLAALAM 90 (346)
T ss_pred cEEEEecCCC-CchhHHHHHHHHHHHHHc------CCCEEEEcCCCH-HHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHH
Confidence 899993 32 346999999999999885 345566777754 44566666665556788788889999999999
Q ss_pred HhcCceeecC-CCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 97 EAGVTLISPY-APTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 97 ~Aga~~iSpf-~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
++|++-+-.- +..++ -.-++.+.+.-++++.+.+|
T Consensus 91 ~~g~dkiRINPGNig~--~e~v~~vv~~ak~~~ipIRI 126 (346)
T TIGR00612 91 AKGVAKVRINPGNIGF--RERVRDVVEKARDHGKAMRI 126 (346)
T ss_pred HhccCeEEECCCCCCC--HHHHHHHHHHHHHCCCCEEE
Confidence 9999755443 22222 35666677777777666553
No 94
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=79.68 E-value=18 Score=37.81 Aligned_cols=124 Identities=17% Similarity=0.230 Sum_probs=82.9
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH-HHHHHHHHHHHhhCc-eeeeeeccCH----------HHHH
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW-EGIQAAKVLESEYGI-HCNLTLLFAF----------AQAV 93 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~-eGi~A~~~L~~~~GI-~vn~TlvFS~----------~Qa~ 93 (321)
|....++++-++-|+.|.++ ||+ .|=+=.|+.. .=.++++.+.+. +. ++.++..... ....
T Consensus 16 ~g~~~s~eeKl~Ia~~L~~~----GVd--~IE~G~p~~s~~d~~~v~~i~~~-~~~~~~i~~~~r~~r~~~~~~~d~~~e 88 (526)
T TIGR00977 16 EGVSFSLEDKIRIAERLDDL----GIH--YIEGGWPGANPKDVQFFWQLKEM-NFKNAKIVAFCSTRRPHKKVEEDKMLQ 88 (526)
T ss_pred CCCCCCHHHHHHHHHHHHHc----CCC--EEEEeCCCCChHHHHHHHHHHHh-CCCCcEEEEEeeecCCCCCCchHHHHH
Confidence 45678899999988888886 675 6777778764 458888888765 66 3445444322 2345
Q ss_pred HHHHhcCceeecCC---------CCC---CCchHHHHHHHHHHHhcCCceEEeeccc----C-CHhHHHH------HhCC
Q psy10958 94 ACAEAGVTLISPYA---------PTE---DPGVVSVTKIYNYYKKFGYKTVVMGASF----R-NTGEILA------LAGC 150 (321)
Q Consensus 94 aaa~Aga~~iSpf~---------~~~---d~Gi~~v~~i~~~~~~~~~~T~vl~AS~----r-~~~~v~~------LaG~ 150 (321)
++.++|...+..|. .+. +.-+..+.++.++.+.+|....+.+-.| | +++++.+ -+|+
T Consensus 89 a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGa 168 (526)
T TIGR00977 89 ALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGA 168 (526)
T ss_pred HHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCC
Confidence 66777888777771 111 2346777888899999998877555432 3 4666665 2698
Q ss_pred CeEEeC
Q psy10958 151 DLMTIG 156 (321)
Q Consensus 151 d~vTip 156 (321)
+.+.++
T Consensus 169 d~i~i~ 174 (526)
T TIGR00977 169 DWLVLC 174 (526)
T ss_pred CeEEEe
Confidence 887654
No 95
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=79.25 E-value=59 Score=30.91 Aligned_cols=146 Identities=23% Similarity=0.256 Sum_probs=93.3
Q ss_pred CcEEEE---ecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE----Eec----CCHHHHHHHH----HHHHhhCceee
Q psy10958 18 GRVSTE---VDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI----KLA----STWEGIQAAK----VLESEYGIHCN 82 (321)
Q Consensus 18 G~Vs~E---V~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I----KIP----aT~eGi~A~~----~L~~~~GI~vn 82 (321)
|.||+. -+|++..+.+++++.|.+=...|++.|+| =|+| -+| ..++-+.++. ++..+.++++=
T Consensus 6 GmvHl~pLPGsP~~~~~~~~i~e~A~~ea~~l~~~GvD--~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~G 83 (257)
T TIGR00259 6 GMVHLLPLPGSPSFDDNLNAVIDKAWKDAMALEEGGVD--AVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLG 83 (257)
T ss_pred EEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCC--EEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCee
Confidence 566665 47888889999999999999999999997 3433 233 3344444443 34433355666
Q ss_pred eeecc-CHHHHHHHHHh-cCceeecC----CCCCCCch--HHHHHHHHHHHhcCCceEEee------c---ccCCHhHHH
Q psy10958 83 LTLLF-AFAQAVACAEA-GVTLISPY----APTEDPGV--VSVTKIYNYYKKFGYKTVVMG------A---SFRNTGEIL 145 (321)
Q Consensus 83 ~TlvF-S~~Qa~aaa~A-ga~~iSpf----~~~~d~Gi--~~v~~i~~~~~~~~~~T~vl~------A---S~r~~~~v~ 145 (321)
+-++. ...++++.|.| |+++|-.- ....|-|+ ..+.++.+|.++.+.+.+|++ + +-+++.+..
T Consensus 84 vnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a 163 (257)
T TIGR00259 84 INVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIA 163 (257)
T ss_pred eeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHH
Confidence 66666 66667776654 88887652 33455554 345678888888776666665 2 236666655
Q ss_pred H----HhCCCeEEe---------CHHHHHHHhc
Q psy10958 146 A----LAGCDLMTI---------GPKLLEELEN 165 (321)
Q Consensus 146 ~----LaG~d~vTi---------pp~~l~~l~~ 165 (321)
. ..+||.+.+ .++.++++.+
T Consensus 164 ~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~ 196 (257)
T TIGR00259 164 LDTVERGLADAVILSGKTTGTEVDLELLKLAKE 196 (257)
T ss_pred HHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHh
Confidence 4 234887755 3566666654
No 96
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=79.18 E-value=20 Score=35.84 Aligned_cols=126 Identities=16% Similarity=0.250 Sum_probs=72.7
Q ss_pred HHHhccCCCcEEEEecCCc--CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeecc
Q psy10958 10 TEILNIIPGRVSTEVDARL--SFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLF 87 (321)
Q Consensus 10 ~~i~~~~~G~Vs~EV~p~l--a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvF 87 (321)
++++..-+|. .+--.|++ -++.+++.+.-.+|.++. ++..|-||++++. ++.- ...
T Consensus 164 a~~R~~~~g~-~~iSP~~h~di~s~edl~~~I~~Lr~~~-----~~~pVgvKl~~~~-~~~~----~~~----------- 221 (368)
T PF01645_consen 164 ARIRGVPPGV-DLISPPPHHDIYSIEDLAQLIEELRELN-----PGKPVGVKLVAGR-GVED----IAA----------- 221 (368)
T ss_dssp HHHHTS-TT---EE--SS-TT-SSHHHHHHHHHHHHHH------TTSEEEEEEE-ST-THHH----HHH-----------
T ss_pred HHHhCCCCCC-ccccCCCCCCcCCHHHHHHHHHHHHhhC-----CCCcEEEEECCCC-cHHH----HHH-----------
Confidence 3445555563 33333333 457788888777787762 4689999999875 2211 111
Q ss_pred CHHHHHHHHHhcCceeecCCC-----------CCC---CchHHHHHHHHHHHhcCCce--EEee-cccCCHhHHHH--Hh
Q psy10958 88 AFAQAVACAEAGVTLISPYAP-----------TED---PGVVSVTKIYNYYKKFGYKT--VVMG-ASFRNTGEILA--LA 148 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~iSpf~~-----------~~d---~Gi~~v~~i~~~~~~~~~~T--~vl~-AS~r~~~~v~~--La 148 (321)
.++++|+++|..-+. .++ |-...+..++++++++|.+- .+++ -.+++..+|.. ..
T Consensus 222 ------~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaL 295 (368)
T PF01645_consen 222 ------GAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALAL 295 (368)
T ss_dssp ------HHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHC
T ss_pred ------hhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhc
Confidence 177888888876621 223 44566778899999988753 3333 34999999997 57
Q ss_pred CCCeEEeCHHHHHHH
Q psy10958 149 GCDLMTIGPKLLEEL 163 (321)
Q Consensus 149 G~d~vTipp~~l~~l 163 (321)
|+|.+-+.-..+-++
T Consensus 296 GAD~v~igt~~liAl 310 (368)
T PF01645_consen 296 GADAVYIGTAALIAL 310 (368)
T ss_dssp T-SEEE-SHHHHHHC
T ss_pred CCCeeEecchhhhhc
Confidence 999998888877654
No 97
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=79.00 E-value=70 Score=31.57 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=88.1
Q ss_pred HhccCC-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec----------CCHHHHHHHHHHHHhhCce
Q psy10958 12 ILNIIP-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA----------STWEGIQAAKVLESEYGIH 80 (321)
Q Consensus 12 i~~~~~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP----------aT~eGi~A~~~L~~~~GI~ 80 (321)
+++.++ ..+.+=-|..-+++.++-|.-|+--.+++ ..| +||+= -..+-++|+++|.++ |..
T Consensus 128 ~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~------~~~-~iKlEvi~e~~~llpd~~~~v~aa~~L~~~-Gf~ 199 (326)
T PRK11840 128 LTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAG------GWD-LVKLEVLGDAKTLYPDMVETLKATEILVKE-GFQ 199 (326)
T ss_pred HHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhc------CCC-eEEEEEcCCCCCcccCHHHHHHHHHHHHHC-CCE
Confidence 444444 23344444445667766666555544442 222 77763 344679999999988 999
Q ss_pred eeeeeccCHHHHHHHHHhcCceeecCC-CC-CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeC
Q psy10958 81 CNLTLLFAFAQAVACAEAGVTLISPYA-PT-EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG 156 (321)
Q Consensus 81 vn~TlvFS~~Qa~aaa~Aga~~iSpf~-~~-~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTip 156 (321)
|.....=++..+.+.+++||..+=|.+ .. ..-|+..-..+..+.+... =..+..|.+.++.++.. -.|+|.+-+.
T Consensus 200 v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~-vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 200 VMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGAT-VPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred EEEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcCC-CcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 999999999999999999997777761 11 1223322222222222221 23566899999999997 4899988554
Q ss_pred HHH
Q psy10958 157 PKL 159 (321)
Q Consensus 157 p~~ 159 (321)
-.+
T Consensus 279 SaI 281 (326)
T PRK11840 279 TAI 281 (326)
T ss_pred cee
Confidence 443
No 98
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=78.95 E-value=62 Score=30.97 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=92.2
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHH
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAE 97 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~ 97 (321)
|+=|+++|.. ..+.++.++.++++.+++...|++ |-..|-... | ... ++.-+....-+++|+..+.+
T Consensus 97 Gf~sVmid~s-~l~~~eni~~t~~v~~~a~~~gv~---Ve~ElG~~g-g-------~ed-~~~g~~~~~t~~eea~~f~~ 163 (282)
T TIGR01859 97 GFSSVMIDGS-HLPFEENLALTKKVVEIAHAKGVS---VEAELGTLG-G-------IED-GVDEKEAELADPDEAEQFVK 163 (282)
T ss_pred CCCEEEECCC-CCCHHHHHHHHHHHHHHHHHcCCE---EEEeeCCCc-C-------ccc-cccccccccCCHHHHHHHHH
Confidence 8889999985 468899999999999999888873 555553322 2 111 21111233559999999997
Q ss_pred -hcCceeec-CC-------CCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHHHHHHHhc
Q psy10958 98 -AGVTLISP-YA-------PTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 98 -Aga~~iSp-f~-------~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~~l~~l~~ 165 (321)
.|++|+++ |+ ....-++..++++.+.+ +.+-...++|=-+.+++.. -.|++-+-+.-++..++..
T Consensus 164 ~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~ 239 (282)
T TIGR01859 164 ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTA 239 (282)
T ss_pred HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHHHHHH
Confidence 89999986 32 11223466666665543 5778888999888888876 3699999888887776665
No 99
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=77.50 E-value=27 Score=33.65 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=66.2
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE-----ecCC----------HHHHHHHHHHHHhhCceeee
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK-----LAST----------WEGIQAAKVLESEYGIHCNL 83 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK-----IPaT----------~eGi~A~~~L~~~~GI~vn~ 83 (321)
++.+=.-|....+.+.+++-|+++.++.++.|+ +++.| =|-| ++|++-.++..+++|++| +
T Consensus 16 ~~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~---~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~Glpv-v 91 (281)
T PRK12457 16 PFVLFGGINVLESLDFTLDVCGEYVEVTRKLGI---PFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPV-I 91 (281)
T ss_pred ceEEEecCCcccCHHHHHHHHHHHHHHHHHCCC---cEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCce-E
Confidence 566667788888999999999999998888877 34555 1322 578999999999899999 9
Q ss_pred eeccCHHHHHHHHHhcCceee
Q psy10958 84 TLLFAFAQAVACAEAGVTLIS 104 (321)
Q Consensus 84 TlvFS~~Qa~aaa~Aga~~iS 104 (321)
|=|....|+..+++. ++.+.
T Consensus 92 TeV~~~~~~~~~ae~-vDilQ 111 (281)
T PRK12457 92 TDVHEVEQAAPVAEV-ADVLQ 111 (281)
T ss_pred EEeCCHHHHHHHhhh-CeEEe
Confidence 999999999999997 66543
No 100
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=77.46 E-value=24 Score=31.93 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=71.4
Q ss_pred cEEEEecCCc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeee--cc--------
Q psy10958 19 RVSTEVDARL-SFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTL--LF-------- 87 (321)
Q Consensus 19 ~Vs~EV~p~l-a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~Tl--vF-------- 87 (321)
-||-|.-|.= -.|...+.+-|+.+.+ .|+. . +-+ .+.+-++.++... +|++.... -|
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~a~~~~~----~G~~---~-~~~-~~~~~~~~i~~~~---~iPil~~~~~~~~~~~~~ig 79 (219)
T cd04729 12 IVSCQALPGEPLHSPEIMAAMALAAVQ----GGAV---G-IRA-NGVEDIRAIRARV---DLPIIGLIKRDYPDSEVYIT 79 (219)
T ss_pred EEEccCCCCCCcCcHHHHHHHHHHHHH----CCCe---E-EEc-CCHHHHHHHHHhC---CCCEEEEEecCCCCCCceeC
Confidence 4777774421 1244444555544444 4553 2 212 5667777777652 56654211 11
Q ss_pred -CHHHHHHHHHhcCceeecCCCC-CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEe
Q psy10958 88 -AFAQAVACAEAGVTLISPYAPT-EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 155 (321)
Q Consensus 88 -S~~Qa~aaa~Aga~~iSpf~~~-~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTi 155 (321)
+..|...|.++|++++.+-... ..|.-....++.+..++++ +..++. ...++.++.. -.|+|++.+
T Consensus 80 ~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv-~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 80 PTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMA-DISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEE-ECCCHHHHHHHHHcCCCEEEc
Confidence 3569999999999988775322 2233245666777777776 444433 6667777665 479998843
No 101
>PRK09389 (R)-citramalate synthase; Provisional
Probab=77.36 E-value=42 Score=34.71 Aligned_cols=124 Identities=21% Similarity=0.221 Sum_probs=80.7
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH-HHHHHHHHHHhhCceeeeeeccC--HHHHHHHHHhcCce
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE-GIQAAKVLESEYGIHCNLTLLFA--FAQAVACAEAGVTL 102 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e-Gi~A~~~L~~~~GI~vn~TlvFS--~~Qa~aaa~Aga~~ 102 (321)
|....++++-++-|+.|.++ ||+ .|=+=-|+..+ -.++++.+.+. +.++.++..-. ..-..++.++|+..
T Consensus 17 ~g~~~s~e~K~~ia~~L~~~----Gv~--~IE~G~p~~~~~d~e~v~~i~~~-~~~~~i~a~~r~~~~di~~a~~~g~~~ 89 (488)
T PRK09389 17 PGVSLTPEEKLEIARKLDEL----GVD--VIEAGSAITSEGEREAIKAVTDE-GLNAEICSFARAVKVDIDAALECDVDS 89 (488)
T ss_pred CCCCcCHHHHHHHHHHHHHc----CCC--EEEEeCCcCCHHHHHHHHHHHhc-CCCcEEEeecccCHHHHHHHHhCCcCE
Confidence 44678898888888888876 665 67777786554 47788888764 65544443222 34445677889988
Q ss_pred eecCC------------CCCCCchHHHHHHHHHHHhcCCceEEee--cccCCHhHHHH------HhCCCeEEeC
Q psy10958 103 ISPYA------------PTEDPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILA------LAGCDLMTIG 156 (321)
Q Consensus 103 iSpf~------------~~~d~Gi~~v~~i~~~~~~~~~~T~vl~--AS~r~~~~v~~------LaG~d~vTip 156 (321)
+..|. ...+..+..+.++.++.+++|+...+-. ++-.+++++.+ -+|+|.+.+|
T Consensus 90 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~ 163 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFC 163 (488)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 87771 1112346777788888999987765433 23345666654 2598887654
No 102
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=76.49 E-value=46 Score=32.80 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=68.1
Q ss_pred HHHHHHHHhhCceeeeeec---cCHHHHHHHHHhcCceeecCC------------CC---------CCCchHHHHHHHHH
Q psy10958 68 QAAKVLESEYGIHCNLTLL---FAFAQAVACAEAGVTLISPYA------------PT---------EDPGVVSVTKIYNY 123 (321)
Q Consensus 68 ~A~~~L~~~~GI~vn~Tlv---FS~~Qa~aaa~Aga~~iSpf~------------~~---------~d~Gi~~v~~i~~~ 123 (321)
..++.+.+..+++|-+=.+ .|..-+..+.++|+++|-..+ |. .+-|+..+..+++.
T Consensus 176 e~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i 255 (352)
T PRK05437 176 DNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEA 255 (352)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHH
Confidence 5677777644778877666 788888889999998876652 11 12355555556555
Q ss_pred HHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHHHHHHHhc
Q psy10958 124 YKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 124 ~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~l~~l~~ 165 (321)
.+.. .+..|++. .+|+..++.. ..|+|.+-+.-.+|..+..
T Consensus 256 ~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~ 299 (352)
T PRK05437 256 RSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALE 299 (352)
T ss_pred HHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHh
Confidence 5542 23445554 5999999987 4799999999999988754
No 103
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=75.39 E-value=20 Score=35.65 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=65.6
Q ss_pred HHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHc----------CCCCCceEEEecCC------------H
Q psy10958 7 LFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEA----------GIDKERILIKLAST------------W 64 (321)
Q Consensus 7 ~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~----------gi~~~nv~IKIPaT------------~ 64 (321)
+-.+.|+.+.+.++.+=+-|.-.+|.+..++-|++|.++..+. ++.+||--+.--.- .
T Consensus 41 ~~i~~Il~g~d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~ 120 (349)
T PRK09261 41 KEIHNILHGKDDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDIN 120 (349)
T ss_pred HHHHHHHcCCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHH
Confidence 3456677777889999999999999999999999999886432 22222222111122 5
Q ss_pred HHHHHHHHH---HHhhCceeeeeeccCHHHHHHHHHh
Q psy10958 65 EGIQAAKVL---ESEYGIHCNLTLLFAFAQAVACAEA 98 (321)
Q Consensus 65 eGi~A~~~L---~~~~GI~vn~TlvFS~~Qa~aaa~A 98 (321)
+||+.+++| ..+.|+++ +|-+..+.+....++.
T Consensus 121 ~GL~~~R~ll~~~~e~Glpv-atE~ld~~~~~y~~dl 156 (349)
T PRK09261 121 DGLRIARKLLLDINELGLPA-ATEFLDPITPQYIADL 156 (349)
T ss_pred HHHHHHHHHHHHHHHhCCCe-EEEecccccHHHHHhh
Confidence 799999999 35569999 8888887777666664
No 104
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=75.27 E-value=84 Score=30.59 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEec--CCHHHHHHHHHHHHhhC--ceeeeeeccCHHHHHHHHHhcCceee----cC
Q psy10958 35 SIAKAKKYIKMYEEAGIDKERILIKLA--STWEGIQAAKVLESEYG--IHCNLTLLFAFAQAVACAEAGVTLIS----PY 106 (321)
Q Consensus 35 ~i~~A~~L~~~~~~~gi~~~nv~IKIP--aT~eGi~A~~~L~~~~G--I~vn~TlvFS~~Qa~aaa~Aga~~iS----pf 106 (321)
..+.+..+++. |++ -|.|-.. .+..-++.++.+++. + +.+-+--+.|.++|..+.++|+++|. |-
T Consensus 95 ~~~~~~~l~ea----gv~--~I~vd~~~G~~~~~~~~i~~ik~~-~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G 167 (325)
T cd00381 95 DKERAEALVEA----GVD--VIVIDSAHGHSVYVIEMIKFIKKK-YPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPG 167 (325)
T ss_pred HHHHHHHHHhc----CCC--EEEEECCCCCcHHHHHHHHHHHHH-CCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCC
Confidence 44555555553 432 3444332 223457788888876 5 77766778999999999999999875 32
Q ss_pred ----CCC----CCCchHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHHHH
Q psy10958 107 ----APT----EDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 107 ----~~~----~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~l 160 (321)
.+. ..|-+..+..+.++.+.++ ..|+++ .+++..++.. .+|+|.+-+.-.++
T Consensus 168 ~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~--vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 168 SICTTRIVTGVGVPQATAVADVAAAARDYG--VPVIADGGIRTSGDIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred cCcccceeCCCCCCHHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHcCCCEEEecchhc
Confidence 121 2244555666666655543 445654 5999998887 47999997765543
No 105
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=74.93 E-value=71 Score=31.55 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=80.3
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH-HHHHHHHHHHhhCceeeeeec--cCHHHHHHHHHhcCce
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE-GIQAAKVLESEYGIHCNLTLL--FAFAQAVACAEAGVTL 102 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e-Gi~A~~~L~~~~GI~vn~Tlv--FS~~Qa~aaa~Aga~~ 102 (321)
|....++++.++-|+.|.++ ||+ .|=+=.|+.++ =.++++.+.+. +.++.+... ....-...+.++|++.
T Consensus 15 ~~~~~s~~~k~~ia~~L~~~----Gv~--~IEvG~p~~~~~~~e~i~~i~~~-~~~~~v~~~~r~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 15 PGVSLTVEQKVEIARKLDEL----GVD--VIEAGFPIASEGEFEAIKKISQE-GLNAEICSLARALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHc----CCC--EEEEeCCCCChHHHHHHHHHHhc-CCCcEEEEEcccCHHHHHHHHHcCcCE
Confidence 34678898888888888775 665 66666687653 36677777765 665554432 2455566778889988
Q ss_pred eecCCC---------CC---CCchHHHHHHHHHHHhcCCceEEee--cccCCHhHHHH------HhCCCeEEe
Q psy10958 103 ISPYAP---------TE---DPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILA------LAGCDLMTI 155 (321)
Q Consensus 103 iSpf~~---------~~---d~Gi~~v~~i~~~~~~~~~~T~vl~--AS~r~~~~v~~------LaG~d~vTi 155 (321)
+..|.. .. +..+..+.++.++.+++|+...+-. ++--+.+++.+ -+|+|.+.+
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINI 160 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 777711 11 1246777788888999998776543 33344566554 258888755
No 106
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=74.90 E-value=24 Score=37.42 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=54.2
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH-HHHHHHHHHh----hCceeeeeeccC
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG-IQAAKVLESE----YGIHCNLTLLFA 88 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG-i~A~~~L~~~----~GI~vn~TlvFS 88 (321)
.|.|+...+|. ++.+-.++-++.+.+. |+ +.|+||=. .+|.- -+-++.|.+. .|++++-|+=.+
T Consensus 141 ~~~i~yt~~p~--~~~~~~~~~a~~l~~~----Ga--d~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA 212 (593)
T PRK14040 141 QGTLSYTTSPV--HTLQTWVDLAKQLEDM----GV--DSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLS 212 (593)
T ss_pred EEEEEEeeCCc--cCHHHHHHHHHHHHHc----CC--CEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchH
Confidence 35677778884 5777788878877764 54 47888732 12322 2333344332 378899999999
Q ss_pred HHHHHHHHHhcCcee
Q psy10958 89 FAQAVACAEAGVTLI 103 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~i 103 (321)
+.-+++|++|||+++
T Consensus 213 ~An~laAieAGa~~v 227 (593)
T PRK14040 213 TATLLKAIEAGIDGV 227 (593)
T ss_pred HHHHHHHHHcCCCEE
Confidence 999999999999865
No 107
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=74.72 E-value=66 Score=30.52 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE---------Eec------------
Q psy10958 3 KLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI---------KLA------------ 61 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I---------KIP------------ 61 (321)
+++.++.+.+.+.++-+|++-++|. .+++++-|+.+.+ .|++. +.+ -+.
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKl~~~----~~~~~~~a~~l~~----~G~d~--i~~~nt~~g~~~~~~~~~~~~~~~~gg 212 (301)
T PRK07259 143 ELAYEVVKAVKEVVKVPVIVKLTPN----VTDIVEIAKAAEE----AGADG--LSLINTLKGMAIDIKTRKPILANVTGG 212 (301)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCC----chhHHHHHHHHHH----cCCCE--EEEEccccccccccccCceeecCCcCc
Confidence 3566777777777777898888763 3344444444433 34431 111 000
Q ss_pred -----CCHHHHHHHHHHHHhhCceeeee-eccCHHHHHHHHHhcCceeecC-CCCCCCch--HHHHHHHHHHHhcCCc
Q psy10958 62 -----STWEGIQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAGVTLISPY-APTEDPGV--VSVTKIYNYYKKFGYK 130 (321)
Q Consensus 62 -----aT~eGi~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf-~~~~d~Gi--~~v~~i~~~~~~~~~~ 130 (321)
..+-.++.++++.+..+|++-+. -|.|.+++..+..+||+.++.. ....+|.+ ...+...+++.++|++
T Consensus 213 ~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 213 LSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred cCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCCC
Confidence 01124667777765446777654 7889999999999999988888 33335542 3344556667777654
No 108
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=74.68 E-value=65 Score=33.53 Aligned_cols=119 Identities=15% Similarity=0.209 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEecCCH--HHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCceeec-----
Q psy10958 34 ASIAKAKKYIKMYEEAGIDKERILIKLASTW--EGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLISP----- 105 (321)
Q Consensus 34 ~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~iSp----- 105 (321)
...+.++.|++. |+ +-|.|-.+--. .=+..++.+++.+ +..+-+--|-+.++|..|.++|++.|-.
T Consensus 248 ~~~~r~~~l~~a----g~--d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G 321 (505)
T PLN02274 248 SDKERLEHLVKA----GV--DVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSG 321 (505)
T ss_pred cHHHHHHHHHHc----CC--CEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCC
Confidence 346788888875 44 36777765311 2246788888754 5777666789999999999999998732
Q ss_pred C---CCC----CCCchHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHHHH
Q psy10958 106 Y---APT----EDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 106 f---~~~----~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~l 160 (321)
+ .+. +.|....+..+.++.+.. +..|++. .+++..++.. -+|+|.+-+.-.+.
T Consensus 322 ~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~ 384 (505)
T PLN02274 322 SICTTQEVCAVGRGQATAVYKVASIAAQH--GVPVIADGGISNSGHIVKALTLGASTVMMGSFLA 384 (505)
T ss_pred ccccCccccccCCCcccHHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhc
Confidence 1 111 223333444455554443 4556665 5999999997 37999997776543
No 109
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.64 E-value=16 Score=35.34 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=53.9
Q ss_pred eccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 85 LLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~ 158 (321)
-+-|++|+..|+++|++||- .++-+...++++....++...+..+.++.=-|.+.+.+ ..|+|.|.++..
T Consensus 202 Ev~tleea~eA~~~GaD~I~----LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl 273 (288)
T PRK07428 202 ETETLEQVQEALEYGADIIM----LDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSAP 273 (288)
T ss_pred ECCCHHHHHHHHHcCCCEEE----ECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEchh
Confidence 46799999999999999884 45777888999888887655566666665557888877 479999866654
No 110
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=74.43 E-value=67 Score=30.36 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=75.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH---------HHHHHHHHHHhhCceeeeeecc-----------
Q psy10958 28 LSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE---------GIQAAKVLESEYGIHCNLTLLF----------- 87 (321)
Q Consensus 28 la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e---------Gi~A~~~L~~~~GI~vn~TlvF----------- 87 (321)
...+++++++-|..|.+. ||+ -|=+-.|++.. -.++++++.+. .-++.+..+.
T Consensus 16 ~~~~~~~~~~ia~~L~~~----Gv~--~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~-~~~~~l~~~~r~~~~~~~~~~ 88 (275)
T cd07937 16 TRMRTEDMLPIAEALDEA----GFF--SLEVWGGATFDVCMRFLNEDPWERLRELRKA-MPNTPLQMLLRGQNLVGYRHY 88 (275)
T ss_pred eeccHHHHHHHHHHHHHc----CCC--EEEccCCcchhhhccccCCCHHHHHHHHHHh-CCCCceehhcccccccCccCC
Confidence 356888888888888775 664 55556677522 25566666654 3344444333
Q ss_pred ----CHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEE--e--ecccCCHhHHHH------HhCCCeE
Q psy10958 88 ----AFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVV--M--GASFRNTGEILA------LAGCDLM 153 (321)
Q Consensus 88 ----S~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~v--l--~AS~r~~~~v~~------LaG~d~v 153 (321)
...-...+.++|+++|..|....+ +..+..+.++.+++|+.+.+ + .++--+.+++.+ -+|+|.|
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~~--~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 166 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALND--VRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSI 166 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCCh--HHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 233334677788988888843333 67888899999999987764 2 133345555554 2698887
Q ss_pred EeC
Q psy10958 154 TIG 156 (321)
Q Consensus 154 Tip 156 (321)
.++
T Consensus 167 ~l~ 169 (275)
T cd07937 167 CIK 169 (275)
T ss_pred EEc
Confidence 653
No 111
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=74.25 E-value=19 Score=33.99 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=79.8
Q ss_pred HHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH----------------HHHHHHHH
Q psy10958 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG----------------IQAAKVLE 74 (321)
Q Consensus 11 ~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG----------------i~A~~~L~ 74 (321)
.+.+.++.++-+|.+| +++|++-|.++. |..+-=||-.++. -+++++|+
T Consensus 57 ~L~~~~~~~lNlE~a~-----t~e~~~ia~~~k----------P~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~ 121 (239)
T PF03740_consen 57 RLRELVKTPLNLEMAP-----TEEMVDIALKVK----------PDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLK 121 (239)
T ss_dssp HHHHH-SSEEEEEEES-----SHHHHHHHHHH------------SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHH
T ss_pred HHHHHcccCEEeccCC-----CHHHHHHHHhCC----------cCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHH
Confidence 4455566789999976 488998776654 5555568866542 37889999
Q ss_pred HhhCceeeeeeccCHHHHHHHHHhcCceeecC----CCCCCCc-------hHHHHHHHHHHHhcCCceEEeec---ccCC
Q psy10958 75 SEYGIHCNLTLLFAFAQAVACAEAGVTLISPY----APTEDPG-------VVSVTKIYNYYKKFGYKTVVMGA---SFRN 140 (321)
Q Consensus 75 ~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf----~~~~d~G-------i~~v~~i~~~~~~~~~~T~vl~A---S~r~ 140 (321)
+. ||+|-+..==.++|..+|.+.|+++|-.| ....+.+ +.-+..+-++-.+.|... -+- ++.|
T Consensus 122 ~~-gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~V--nAGHgL~y~N 198 (239)
T PF03740_consen 122 DA-GIRVSLFIDPDPEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGV--NAGHGLNYDN 198 (239)
T ss_dssp HT-T-EEEEEE-S-HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EE--EEETT--TTT
T ss_pred hC-CCEEEEEeCCCHHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEE--ecCCCCCHHH
Confidence 87 99999999999999999999999988666 2112111 122334444444444322 111 3677
Q ss_pred HhHHHHHhCCCeEEeCHHHHHH
Q psy10958 141 TGEILALAGCDLMTIGPKLLEE 162 (321)
Q Consensus 141 ~~~v~~LaG~d~vTipp~~l~~ 162 (321)
+..+..+.+..-+-|.-.++.+
T Consensus 199 ~~~i~~i~~i~EvnIGHaiia~ 220 (239)
T PF03740_consen 199 VRPIAAIPPIEEVNIGHAIIAR 220 (239)
T ss_dssp HHHHHTSTTEEEEEE-HHHHHH
T ss_pred HHHHHhCCCceEEecCHHHHHH
Confidence 7777766666666666655544
No 112
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=73.68 E-value=29 Score=35.80 Aligned_cols=82 Identities=27% Similarity=0.351 Sum_probs=54.7
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH-HHHHHHHHHh----hCceeeeeeccC
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG-IQAAKVLESE----YGIHCNLTLLFA 88 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG-i~A~~~L~~~----~GI~vn~TlvFS 88 (321)
.|.++.-.+| .++.+..++-|+++.+. |+ ++|+||=. .||.- -+-++.|++. .+++++-|.=.+
T Consensus 139 ~~~i~~t~~p--~~t~e~~~~~a~~l~~~----Ga--d~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA 210 (467)
T PRK14041 139 QGAISYTVSP--VHTLEYYLEFARELVDM----GV--DSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLA 210 (467)
T ss_pred EEEEEeccCC--CCCHHHHHHHHHHHHHc----CC--CEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcH
Confidence 3555555677 35778888888887765 55 47887733 23332 2233333332 267788888899
Q ss_pred HHHHHHHHHhcCce----eecC
Q psy10958 89 FAQAVACAEAGVTL----ISPY 106 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~----iSpf 106 (321)
+.-+++|++|||++ ++||
T Consensus 211 ~AN~laAieaGad~vD~sv~~~ 232 (467)
T PRK14041 211 SLAYLAAVEAGADMFDTAISPF 232 (467)
T ss_pred HHHHHHHHHhCCCEEEeecccc
Confidence 99999999999975 4677
No 113
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=73.31 E-value=12 Score=33.27 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=66.5
Q ss_pred CceEEE------ecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhc
Q psy10958 54 ERILIK------LASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKF 127 (321)
Q Consensus 54 ~nv~IK------IPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~ 127 (321)
+-++|| .-...+-++++++.... ..++ .--+.+.+|+..|+++|++.| +.++.....++++.+.++..
T Consensus 51 d~ili~~nHi~~~g~i~~av~~~~~~~~~-~~~I-~VEv~~~ee~~ea~~~g~d~I----~lD~~~~~~~~~~v~~l~~~ 124 (169)
T PF01729_consen 51 DMILIKDNHIAFFGGIEEAVKAARQAAPE-KKKI-EVEVENLEEAEEALEAGADII----MLDNMSPEDLKEAVEELREL 124 (169)
T ss_dssp SSEEE-HHHHHHHSSHHHHHHHHHHHSTT-TSEE-EEEESSHHHHHHHHHTT-SEE----EEES-CHHHHHHHHHHHHHH
T ss_pred CcEEehHHHHHHhCCHHHHHHHHHHhCCC-CceE-EEEcCCHHHHHHHHHhCCCEE----EecCcCHHHHHHHHHHHhhc
Confidence 567776 22223445555555533 3333 236789999999999998776 45666779999999999998
Q ss_pred CCceEEeecccCCHhHHHH--HhCCCeEEeCH
Q psy10958 128 GYKTVVMGASFRNTGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 128 ~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp 157 (321)
+.+.++.+++=-|.+.|.+ -.|+|.+-+..
T Consensus 125 ~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 125 NPRVKIEASGGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp TTTSEEEEESSSSTTTHHHHHHTT-SEEEECH
T ss_pred CCcEEEEEECCCCHHHHHHHHhcCCCEEEcCh
Confidence 8888888887667777776 46899886654
No 114
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=72.69 E-value=40 Score=31.61 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=58.7
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE-------------ec---------
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK-------------LA--------- 61 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK-------------IP--------- 61 (321)
.+.++.+.+.+.++-+|++-++|. .+.+++.+-|+.+.+. |++ -+.+= .|
T Consensus 149 ~~~eiv~~vr~~~~~pv~vKl~~~--~~~~~~~~~a~~l~~~----Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 220 (289)
T cd02810 149 AVANLLKAVKAAVDIPLLVKLSPY--FDLEDIVELAKAAERA----GAD--GLTAINTISGRVVDLKTVGPGPKRGTGGL 220 (289)
T ss_pred HHHHHHHHHHHccCCCEEEEeCCC--CCHHHHHHHHHHHHHc----CCC--EEEEEcccCccceecccCccccCCCCCcc
Confidence 455667777766666788888764 3555666666655543 443 22210 00
Q ss_pred ----CCHHHHHHHHHHHHhh--Cceeeee-eccCHHHHHHHHHhcCceeecC
Q psy10958 62 ----STWEGIQAAKVLESEY--GIHCNLT-LLFAFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 62 ----aT~eGi~A~~~L~~~~--GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf 106 (321)
..+-+++.++++.+.. +|++-++ -|+|.+++..+..+||+.+...
T Consensus 221 sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 221 SGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 0122466677776554 5676665 6788899999988898877655
No 115
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.57 E-value=52 Score=30.17 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=58.1
Q ss_pred hCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEE
Q psy10958 77 YGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMT 154 (321)
Q Consensus 77 ~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vT 154 (321)
.||.+ +=.++|+.++..|.++|++|+-.|... .-|...++.+...+ ....+++..=-|.+.+.+ -+|++.+.
T Consensus 108 ~~i~~-iPG~~T~~E~~~A~~~Gad~vklFPa~-~~G~~~ik~l~~~~----p~ip~~atGGI~~~N~~~~l~aGa~~va 181 (213)
T PRK06552 108 YQIPY-LPGCMTVTEIVTALEAGSEIVKLFPGS-TLGPSFIKAIKGPL----PQVNVMVTGGVNLDNVKDWFAAGADAVG 181 (213)
T ss_pred cCCCE-ECCcCCHHHHHHHHHcCCCEEEECCcc-cCCHHHHHHHhhhC----CCCEEEEECCCCHHHHHHHHHCCCcEEE
Confidence 38888 678999999999999999999999522 24566666554443 336778776666777777 37999998
Q ss_pred eCHHHH
Q psy10958 155 IGPKLL 160 (321)
Q Consensus 155 ipp~~l 160 (321)
+.-.+.
T Consensus 182 vgs~l~ 187 (213)
T PRK06552 182 IGGELN 187 (213)
T ss_pred EchHHh
Confidence 887774
No 116
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=71.81 E-value=44 Score=32.66 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=65.3
Q ss_pred HHHHHHHHhccCC--CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC--------------HHHHH
Q psy10958 5 VILFGTEILNIIP--GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST--------------WEGIQ 68 (321)
Q Consensus 5 ~v~~~~~i~~~~~--G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT--------------~eGi~ 68 (321)
+.++...|.+.++ -.+++|++|..- +. + ..+.+++.|++ ||-|-|=+. .+-++
T Consensus 70 l~~ll~~i~~~~~~~~eitiE~nP~~~-~~----e----~l~~l~~~Gvn--RiSiGvQS~~~~~L~~lgR~~~~~~~~~ 138 (350)
T PRK08446 70 YEPIFEIISPYLSKDCEITTEANPNSA-TK----A----WLKGMKNLGVN--RISFGVQSFNEDKLKFLGRIHSQKQIIK 138 (350)
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCC-CH----H----HHHHHHHcCCC--EEEEecccCCHHHHHHcCCCCCHHHHHH
Confidence 3445555544332 479999999643 22 2 23334445665 665555433 23578
Q ss_pred HHHHHHHhhCc-eeeeeeccC-HHHHH--------HHHHhcCceeecCCCCCC-------------CchHHHHHHHHHHH
Q psy10958 69 AAKVLESEYGI-HCNLTLLFA-FAQAV--------ACAEAGVTLISPYAPTED-------------PGVVSVTKIYNYYK 125 (321)
Q Consensus 69 A~~~L~~~~GI-~vn~TlvFS-~~Qa~--------aaa~Aga~~iSpf~~~~d-------------~Gi~~v~~i~~~~~ 125 (321)
|++.+.+. |+ ++|+.++|+ +.|.. .+.+.|+.-+|.|...-. +.-.....+.+++.
T Consensus 139 ai~~lr~~-g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~ 217 (350)
T PRK08446 139 AIENAKKA-GFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLE 217 (350)
T ss_pred HHHHHHHc-CCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHH
Confidence 88888876 99 599999996 22322 244557788877721111 11233445566667
Q ss_pred hcCCc
Q psy10958 126 KFGYK 130 (321)
Q Consensus 126 ~~~~~ 130 (321)
..||.
T Consensus 218 ~~Gy~ 222 (350)
T PRK08446 218 ELGFK 222 (350)
T ss_pred HCCCc
Confidence 77765
No 117
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=71.57 E-value=35 Score=31.13 Aligned_cols=108 Identities=14% Similarity=0.224 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecCCH-----HHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC---
Q psy10958 35 SIAKAKKYIKMYEEAGIDKERILIKLASTW-----EGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY--- 106 (321)
Q Consensus 35 ~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~-----eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf--- 106 (321)
++++++.|++. |.+ +|-+=+|. .--+-+++.+.+ + ...+-=|.|++.++.|.++|+++||.=
T Consensus 53 T~~ev~~l~~a----Gad----IIAlDaT~R~Rp~~l~~li~~i~~~-~-~l~MADist~ee~~~A~~~G~D~I~TTLsG 122 (192)
T PF04131_consen 53 TLKEVDALAEA----GAD----IIALDATDRPRPETLEELIREIKEK-Y-QLVMADISTLEEAINAAELGFDIIGTTLSG 122 (192)
T ss_dssp SHHHHHHHHHC----T-S----EEEEE-SSSS-SS-HHHHHHHHHHC-T-SEEEEE-SSHHHHHHHHHTT-SEEE-TTTT
T ss_pred CHHHHHHHHHc----CCC----EEEEecCCCCCCcCHHHHHHHHHHh-C-cEEeeecCCHHHHHHHHHcCCCEEEccccc
Confidence 46778888774 222 23333332 122344556655 6 666778899999999999999998765
Q ss_pred ----CCCCCCchHHHHHHHHHHHhcCCceEEee-cccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 107 ----APTEDPGVVSVTKIYNYYKKFGYKTVVMG-ASFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 107 ----~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~-AS~r~~~~v~~--LaG~d~vTipp~ 158 (321)
.....|.+..++++.+. + ..|++ --+.+++++.+ -+|++.|++.-+
T Consensus 123 YT~~t~~~~pD~~lv~~l~~~----~--~pvIaEGri~tpe~a~~al~~GA~aVVVGsA 175 (192)
T PF04131_consen 123 YTPYTKGDGPDFELVRELVQA----D--VPVIAEGRIHTPEQAAKALELGAHAVVVGSA 175 (192)
T ss_dssp SSTTSTTSSHHHHHHHHHHHT----T--SEEEEESS--SHHHHHHHHHTT-SEEEE-HH
T ss_pred CCCCCCCCCCCHHHHHHHHhC----C--CcEeecCCCCCHHHHHHHHhcCCeEEEECcc
Confidence 22355678888776542 2 33544 46899999998 489999988654
No 118
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=71.15 E-value=20 Score=35.72 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=57.9
Q ss_pred HHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE------EecCC------------------
Q psy10958 8 FGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI------KLAST------------------ 63 (321)
Q Consensus 8 ~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I------KIPaT------------------ 63 (321)
-.+.|+.+.+.+..+=+-|.-.+|.+..++-|++|.++..+. .++++| -=|-|
T Consensus 42 ~I~~Il~g~d~rllvIvGPCSIhd~~~aleyA~rLk~l~~~~---~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~ 118 (356)
T PRK12822 42 DIRNILLGKDPRLLVIIGPCSIHDPQAALEYAKRLAVLQHQY---LDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSND 118 (356)
T ss_pred HHHHHHcCCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHHhh---cccEEEEEEeccccCCCCCCccccccCCCCCCCcc
Confidence 345677777789999999999999999999999999986542 123222 11555
Q ss_pred -HHHHHHHHHH---HHhhCceeeeeeccCHH
Q psy10958 64 -WEGIQAAKVL---ESEYGIHCNLTLLFAFA 90 (321)
Q Consensus 64 -~eGi~A~~~L---~~~~GI~vn~TlvFS~~ 90 (321)
.+||+.+|+| ..++|.++ +|-+..+.
T Consensus 119 i~~GL~i~R~ll~~~~~~GlPv-atE~ld~~ 148 (356)
T PRK12822 119 IEKGLRLARQLLLSINTLGLAT-ATEFLDTT 148 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCCE-EEeecccc
Confidence 5899999998 66679998 56544443
No 119
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=70.69 E-value=17 Score=34.08 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=60.5
Q ss_pred HHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH------HH----------HHHHHHH
Q psy10958 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE------GI----------QAAKVLE 74 (321)
Q Consensus 11 ~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e------Gi----------~A~~~L~ 74 (321)
.+.+.++.++-+|..| +++|++-|.++. |.-+-=||-.++ |+ +.++.|.
T Consensus 56 ~L~~~~~~~lNlE~a~-----t~em~~ia~~~k----------P~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~ 120 (234)
T cd00003 56 LLRELVRTELNLEMAP-----TEEMLEIALEVK----------PHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLK 120 (234)
T ss_pred HHHHHcCCCEEeccCC-----CHHHHHHHHHCC----------CCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHH
Confidence 3445556788999866 678888776653 455555785443 43 5689999
Q ss_pred HhhCceeeeeeccCHHHHHHHHHhcCceeecC
Q psy10958 75 SEYGIHCNLTLLFAFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 75 ~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf 106 (321)
+. ||+|-+..==..+|..+|++.||++|-.|
T Consensus 121 ~~-gI~VSLFiDPd~~qi~~A~~~GAd~VELh 151 (234)
T cd00003 121 DA-GIRVSLFIDPDPEQIEAAKEVGADRVELH 151 (234)
T ss_pred HC-CCEEEEEeCCCHHHHHHHHHhCcCEEEEe
Confidence 87 99999988889999999999999977555
No 120
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=70.51 E-value=35 Score=35.26 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=68.3
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH----HHHHHHHHH-hhCceeeeeeccC
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG----IQAAKVLES-EYGIHCNLTLLFA 88 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG----i~A~~~L~~-~~GI~vn~TlvFS 88 (321)
.+.++...+|. ++.+-.++.|+++.+. |+ +.|+||=. .||.- ++++++... ..|+++.-|.=.+
T Consensus 149 ~~~i~yt~sp~--~t~~y~~~~a~~l~~~----Ga--d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA 220 (468)
T PRK12581 149 QLCIAYTTSPV--HTLNYYLSLVKELVEM----GA--DSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGIS 220 (468)
T ss_pred EEEEEEEeCCc--CcHHHHHHHHHHHHHc----CC--CEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccH
Confidence 47788888884 6888888888888875 55 47888743 23322 344443210 1278888888899
Q ss_pred HHHHHHHHHhcCce----eecCCCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 89 FAQAVACAEAGVTL----ISPYAPTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~----iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
+.-+++|++|||+. ++||+. ..|-.....+..+++..|++|.+
T Consensus 221 ~An~laAieAGad~vD~ai~g~g~--gagN~~tE~lv~~L~~~g~~tgi 267 (468)
T PRK12581 221 QMTYLAAVEAGADRIDTALSPFSE--GTSQPATESMYLALKEAGYDITL 267 (468)
T ss_pred HHHHHHHHHcCCCEEEeeccccCC--CcCChhHHHHHHHHHhcCCCCCc
Confidence 99999999999975 477732 12333333444445555555543
No 121
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=70.24 E-value=27 Score=37.16 Aligned_cols=80 Identities=21% Similarity=0.142 Sum_probs=56.2
Q ss_pred CCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH-HHHHHHHHHh----hCceeeeeecc
Q psy10958 16 IPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG-IQAAKVLESE----YGIHCNLTLLF 87 (321)
Q Consensus 16 ~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG-i~A~~~L~~~----~GI~vn~TlvF 87 (321)
..|.++.-.+| -++.+..++-|+++.+. |+ +.|+||=. .||.- -+-++.|++. .++++.-|+=.
T Consensus 139 ~~~~i~yt~sp--~~t~e~~~~~ak~l~~~----Ga--d~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gl 210 (596)
T PRK14042 139 AQGAICYTTSP--VHTLDNFLELGKKLAEM----GC--DSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGL 210 (596)
T ss_pred EEEEEEecCCC--CCCHHHHHHHHHHHHHc----CC--CEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCc
Confidence 34677777888 58999999999998875 55 47888743 23322 2223333332 26777788888
Q ss_pred CHHHHHHHHHhcCcee
Q psy10958 88 AFAQAVACAEAGVTLI 103 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~i 103 (321)
++.-+++|++|||+++
T Consensus 211 a~an~laAieaGad~i 226 (596)
T PRK14042 211 ASICHYEAVLAGCNHI 226 (596)
T ss_pred HHHHHHHHHHhCCCEE
Confidence 9999999999999764
No 122
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=70.20 E-value=35 Score=36.15 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=52.9
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHH-HHHHHHHHHHh----hCceeeeeeccCH
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWE-GIQAAKVLESE----YGIHCNLTLLFAF 89 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~e-Gi~A~~~L~~~----~GI~vn~TlvFS~ 89 (321)
+.++.-.+|+ +|.+..++-++++.+. |+ +.|+||=. .||. --.-++.|.+. .|++++-|.=.++
T Consensus 136 ~~i~~t~~p~--~~~~~~~~~~~~~~~~----Ga--d~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~ 207 (582)
T TIGR01108 136 GTISYTTSPV--HTLETYLDLAEELLEM----GV--DSICIKDMAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAE 207 (582)
T ss_pred EEEEeccCCC--CCHHHHHHHHHHHHHc----CC--CEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHH
Confidence 4455555664 6888899989888875 54 47777632 1222 12233333322 2788999999999
Q ss_pred HHHHHHHHhcCcee
Q psy10958 90 AQAVACAEAGVTLI 103 (321)
Q Consensus 90 ~Qa~aaa~Aga~~i 103 (321)
.-+++|++|||+++
T Consensus 208 An~laAveaGa~~v 221 (582)
T TIGR01108 208 MALLKAIEAGADGI 221 (582)
T ss_pred HHHHHHHHhCCCEE
Confidence 99999999999865
No 123
>PRK00915 2-isopropylmalate synthase; Validated
Probab=69.67 E-value=91 Score=32.38 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=76.1
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH-HHHHHHHHHHHhhCceeeeeecc--CHHHHHHHH----Hhc
Q psy10958 27 RLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW-EGIQAAKVLESEYGIHCNLTLLF--AFAQAVACA----EAG 99 (321)
Q Consensus 27 ~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~-eGi~A~~~L~~~~GI~vn~TlvF--S~~Qa~aaa----~Ag 99 (321)
....++++.++-|+.|.++ ||+ .|=+=.|+.. .=.++++.+... +-++.++.+- ...-...+. ++|
T Consensus 20 g~~~s~e~K~~ia~~L~~~----Gv~--~IE~G~p~~s~~d~~~v~~i~~~-~~~~~i~a~~r~~~~did~a~~a~~~~~ 92 (513)
T PRK00915 20 GASLTVEEKLQIAKQLERL----GVD--VIEAGFPASSPGDFEAVKRIART-VKNSTVCGLARAVKKDIDAAAEALKPAE 92 (513)
T ss_pred CCCCCHHHHHHHHHHHHHc----CCC--EEEEcCCCCChHHHHHHHHHHhh-CCCCEEEEEccCCHHHHHHHHHHhhcCC
Confidence 3568899999988888876 665 6666677653 336677777644 3333333222 233333444 456
Q ss_pred CceeecCC-----------CC-CCCchHHHHHHHHHHHhcCCceEEee--cccCCHhHHHHH------hCCCeEEeC
Q psy10958 100 VTLISPYA-----------PT-EDPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILAL------AGCDLMTIG 156 (321)
Q Consensus 100 a~~iSpf~-----------~~-~d~Gi~~v~~i~~~~~~~~~~T~vl~--AS~r~~~~v~~L------aG~d~vTip 156 (321)
...+..|. +. -+..+..+.++.++.+.+|+...+-. ++-.+++++.++ +|++.+.+|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~ 169 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIP 169 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 66677661 11 12346777888999999998875444 444556666652 588877553
No 124
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=69.61 E-value=79 Score=31.55 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=66.0
Q ss_pred HHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC---CCCCC---CchHHHHHHHHHHHhcCCceEEeecccCCHh
Q psy10958 69 AAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY---APTED---PGVVSVTKIYNYYKKFGYKTVVMGASFRNTG 142 (321)
Q Consensus 69 A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf---~~~~d---~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~ 142 (321)
-++.|.+..+.++-+--|.+.+.+..|.++|++.|..= ++.-+ +.+..+.++.+.+ + -..++-..+|+..
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~---~-~~vi~dGGIr~g~ 302 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT---Y-KPVLIDSGIRRGS 302 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh---C-CeEEEeCCCCCHH
Confidence 45555554466777788999999999999999876544 33333 2355555554433 3 2234445699999
Q ss_pred HHHH--HhCCCeEEeCHHHHHHHhcC
Q psy10958 143 EILA--LAGCDLMTIGPKLLEELENS 166 (321)
Q Consensus 143 ~v~~--LaG~d~vTipp~~l~~l~~~ 166 (321)
+|.. ..|+|.+-+.-.+|..+...
T Consensus 303 Dv~KALaLGA~aV~iGr~~l~~la~~ 328 (361)
T cd04736 303 DIVKALALGANAVLLGRATLYGLAAR 328 (361)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHHhc
Confidence 9987 47999999999999998753
No 125
>PRK05660 HemN family oxidoreductase; Provisional
Probab=69.56 E-value=1e+02 Score=30.54 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=57.2
Q ss_pred HHHHHHHHhccC---CC-cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--------------HH
Q psy10958 5 VILFGTEILNII---PG-RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--------------EG 66 (321)
Q Consensus 5 ~v~~~~~i~~~~---~G-~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--------------eG 66 (321)
+..+...+.+.. ++ .|++|++|..-.. +.. ..+++.|++ ||-|-|-+.. .-
T Consensus 77 l~~ll~~l~~~~~~~~~~eit~e~np~~l~~-----e~l----~~Lk~~Gv~--risiGvqS~~~~~L~~l~r~~~~~~~ 145 (378)
T PRK05660 77 IQRLLDGVRARLPFAPDAEITMEANPGTVEA-----DRF----VGYQRAGVN--RISIGVQSFSEEKLKRLGRIHGPDEA 145 (378)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEeCcCcCCH-----HHH----HHHHHcCCC--EEEeccCcCCHHHHHHhCCCCCHHHH
Confidence 445555555543 22 7999999964422 222 233445665 7777776543 34
Q ss_pred HHHHHHHHHhhCce-eeeeeccCHH---------HHHHHHHhcCceeecC
Q psy10958 67 IQAAKVLESEYGIH-CNLTLLFAFA---------QAVACAEAGVTLISPY 106 (321)
Q Consensus 67 i~A~~~L~~~~GI~-vn~TlvFS~~---------Qa~aaa~Aga~~iSpf 106 (321)
++|++.+.+. |+. +|+.++|++. -...+.+.|++.||.|
T Consensus 146 ~~ai~~~~~~-G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y 194 (378)
T PRK05660 146 KRAAKLAQGL-GLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWY 194 (378)
T ss_pred HHHHHHHHHc-CCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEee
Confidence 6788888876 995 7999999832 2333555688888887
No 126
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.29 E-value=99 Score=28.83 Aligned_cols=123 Identities=13% Similarity=0.102 Sum_probs=75.6
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE------------ecCCHHHHHHHHHHHHh-hCceeeeee---ccCH
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK------------LASTWEGIQAAKVLESE-YGIHCNLTL---LFAF 89 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK------------IPaT~eGi~A~~~L~~~-~GI~vn~Tl---vFS~ 89 (321)
+.+..+++..++-++.|.+. ||+ .+=+= .|....--++++.+.+. .+.++-+-+ ....
T Consensus 15 ~~~~~~~~~k~~i~~~L~~~----Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
T cd07943 15 VRHQFTLEQVRAIARALDAA----GVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTV 88 (263)
T ss_pred CCeecCHHHHHHHHHHHHHc----CCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCH
Confidence 44678898888888888775 665 33222 12222234455666432 144432222 3346
Q ss_pred HHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEee--cccCCHhHHHHH------hCCCeEEeC
Q psy10958 90 AQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILAL------AGCDLMTIG 156 (321)
Q Consensus 90 ~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~--AS~r~~~~v~~L------aG~d~vTip 156 (321)
.....+.++|++.+..|....+ +..++.+.++.+..|+.+.+-. ++--+++++.++ +|+|.++++
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~--~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 161 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTE--ADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT 161 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhh--HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 6677788889998877732222 2467888888999998764443 555667777652 599987664
No 127
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=69.00 E-value=63 Score=28.62 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=58.6
Q ss_pred CceEEEecCCHHH--H-HHHHHHHHhhCceeeeee---ccCHHHHHHHHHhcCceeecCC-----CCCCCchHHHHHHHH
Q psy10958 54 ERILIKLASTWEG--I-QAAKVLESEYGIHCNLTL---LFAFAQAVACAEAGVTLISPYA-----PTEDPGVVSVTKIYN 122 (321)
Q Consensus 54 ~nv~IKIPaT~eG--i-~A~~~L~~~~GI~vn~Tl---vFS~~Qa~aaa~Aga~~iSpf~-----~~~d~Gi~~v~~i~~ 122 (321)
.+.++ +++...+ + +.++...+ +|+.+-+-+ --+.+++..+.+.|++|+..+. .....++..++++.+
T Consensus 77 ad~i~-vh~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~ 154 (206)
T TIGR03128 77 ADIVT-VLGVADDATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILK 154 (206)
T ss_pred CCEEE-EeccCCHHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHH
Confidence 34444 6666432 3 44455554 599986542 2235899989999999999872 112235555566555
Q ss_pred HHHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHHHH
Q psy10958 123 YYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 123 ~~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~l 160 (321)
.+.. ..+++. .+ +.+.+.+ -+|+|.+.+.-.++
T Consensus 155 ~~~~----~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 155 LVKE----ARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred hcCC----CcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 5432 345423 34 5555555 37999987765543
No 128
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=68.74 E-value=44 Score=31.87 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccCC-C-cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe-----cC---------CHHH
Q psy10958 3 KLVILFGTEILNIIP-G-RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL-----AS---------TWEG 66 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~-G-~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI-----Pa---------T~eG 66 (321)
+++.++.+.+.+.+. + +|.+-++|....+.--..+++..+.+.+++.|++ -+-|-- |. ....
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~ 269 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYF 269 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchh
Confidence 456778888888773 3 7888888753221101234444444444455554 221100 10 1233
Q ss_pred HHHHHHHHHhhCceeeee-eccCHHHHHHHHHh-cCceeecC
Q psy10958 67 IQAAKVLESEYGIHCNLT-LLFAFAQAVACAEA-GVTLISPY 106 (321)
Q Consensus 67 i~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~A-ga~~iSpf 106 (321)
+..++.+.+..++++-++ -+.+..++..+.++ |+++|+.-
T Consensus 270 ~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 270 LELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 455566655446777776 56679999999998 68877754
No 129
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=68.71 E-value=85 Score=31.68 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCCCC-ceEEEecC---CHHHHHHHHHHHHhhC--ceeeeeecc-CHHH--HHHHHHhcCceeecCC
Q psy10958 37 AKAKKYIKMYEEAGIDKE-RILIKLAS---TWEGIQAAKVLESEYG--IHCNLTLLF-AFAQ--AVACAEAGVTLISPYA 107 (321)
Q Consensus 37 ~~A~~L~~~~~~~gi~~~-nv~IKIPa---T~eGi~A~~~L~~~~G--I~vn~TlvF-S~~Q--a~aaa~Aga~~iSpf~ 107 (321)
++|.++.+.. +.. ..+|||-. ...|...++.|.+. | ..+-+=+-+ .... +..++++|++++..=
T Consensus 185 ~~A~~i~~~l-----~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~-~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH- 257 (391)
T PRK13307 185 EEVERVLSQL-----PKSDHIIIEAGTPLIKKFGLEVISKIREV-RPDAFIVADLKTLDTGNLEARMAADATADAVVIS- 257 (391)
T ss_pred HHHHHHHHhc-----ccccceEEEECHHHHHHhCHHHHHHHHHh-CCCCeEEEEecccChhhHHHHHHHhcCCCEEEEe-
Confidence 4777777753 222 35789842 23699999999976 6 334444333 2333 336789999988763
Q ss_pred CCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeC
Q psy10958 108 PTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG 156 (321)
Q Consensus 108 ~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTip 156 (321)
...+...++.+.+..+++|.+..+-.-...++.+... +.|+|.+.+-
T Consensus 258 --~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllh 306 (391)
T PRK13307 258 --GLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELH 306 (391)
T ss_pred --ccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEc
Confidence 3456677888999999998766553333455554444 6788987443
No 130
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=68.54 E-value=41 Score=33.57 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=56.0
Q ss_pred HHHHHHHHhccC---C-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC--------------CHHH
Q psy10958 5 VILFGTEILNII---P-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS--------------TWEG 66 (321)
Q Consensus 5 ~v~~~~~i~~~~---~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa--------------T~eG 66 (321)
+.+++..|.+.. + ..+|+|++|..- +. + ..+.+++.|++ |+-|-|=+ ..+-
T Consensus 85 l~~ll~~i~~~~~~~~~~eit~E~~P~~l-t~-e-------~l~~l~~~Gvn--rislGvQS~~d~~L~~l~R~~~~~~~ 153 (400)
T PRK07379 85 LERILTTLDQRFGIAPDAEISLEIDPGTF-DL-E-------QLQGYRSLGVN--RVSLGVQAFQDELLALCGRSHRVKDI 153 (400)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCcC-CH-H-------HHHHHHHCCCC--EEEEEcccCCHHHHHHhCCCCCHHHH
Confidence 455555555543 2 479999999643 21 1 22334445665 55554432 2346
Q ss_pred HHHHHHHHHhhCce-eeeeeccCHH-HHH--------HHHHhcCceeecC
Q psy10958 67 IQAAKVLESEYGIH-CNLTLLFAFA-QAV--------ACAEAGVTLISPY 106 (321)
Q Consensus 67 i~A~~~L~~~~GI~-vn~TlvFS~~-Qa~--------aaa~Aga~~iSpf 106 (321)
++|++.+.+. |+. +|+.++|++. |.. .+.+.+...||.|
T Consensus 154 ~~ai~~l~~~-G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y 202 (400)
T PRK07379 154 FAAVDLIHQA-GIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCY 202 (400)
T ss_pred HHHHHHHHHc-CCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 7888999876 998 9999999953 443 3344467777777
No 131
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=67.05 E-value=85 Score=29.76 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=76.6
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE-------ecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHh
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK-------LASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEA 98 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK-------IPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~A 98 (321)
|....+++.-++-++.|.++ ||+ .|=+= +|+...--.+++.+....+.++ ..++-.......|.++
T Consensus 13 ~~~~~s~e~K~~i~~~L~~~----Gv~--~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~-~~~~~~~~dv~~A~~~ 85 (274)
T cd07938 13 EKTFIPTEDKIELIDALSAA----GLR--RIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRY-SALVPNLRGAERALAA 85 (274)
T ss_pred CCCCcCHHHHHHHHHHHHHc----CCC--EEEeCCCCCcccccccCCHHHHHhhcccCCCCEE-EEECCCHHHHHHHHHc
Confidence 34567889888888888876 665 45443 5655432345666553224443 3335678888899999
Q ss_pred cCceeecCC---------CCC---CCchHHHHHHHHHHHhcCCceEEe-eccc-------CCHhHHHH------HhCCCe
Q psy10958 99 GVTLISPYA---------PTE---DPGVVSVTKIYNYYKKFGYKTVVM-GASF-------RNTGEILA------LAGCDL 152 (321)
Q Consensus 99 ga~~iSpf~---------~~~---d~Gi~~v~~i~~~~~~~~~~T~vl-~AS~-------r~~~~v~~------LaG~d~ 152 (321)
|++.+..|. ... ..-+..+.++.++.+++|+..++- ..+| -+.+++.+ -+|+|.
T Consensus 86 g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 86 GVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDE 165 (274)
T ss_pred CcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 998777771 111 134566777888889999876431 1123 24555554 259988
Q ss_pred EEeC
Q psy10958 153 MTIG 156 (321)
Q Consensus 153 vTip 156 (321)
|.++
T Consensus 166 i~l~ 169 (274)
T cd07938 166 ISLG 169 (274)
T ss_pred EEEC
Confidence 7654
No 132
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=66.89 E-value=94 Score=30.39 Aligned_cols=122 Identities=12% Similarity=0.022 Sum_probs=81.5
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCC-------CCCceEEEe---------------c
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGI-------DKERILIKL---------------A 61 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi-------~~~nv~IKI---------------P 61 (321)
.+..+.+.+.+..+=+|.+-+.| +.++|.+-|+.+.+. ...|+ +++++.++- |
T Consensus 148 ~l~~l~~~vk~~~~~Pv~vKl~P----~~~di~~iA~~~~~~-g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ 222 (310)
T COG0167 148 LLEKLLEAVKAATKVPVFVKLAP----NITDIDEIAKAAEEA-GADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPP 222 (310)
T ss_pred HHHHHHHHHHhcccCceEEEeCC----CHHHHHHHHHHHHHc-CCcEEEEEeeccccccccccccccccCcCCCCcCccc
Confidence 44556666667777899999988 777777777777663 11111 122233322 2
Q ss_pred CCHHHHHHHHHHHHhhC--ceeeee-eccCHHHHHHHHHhcCceeecCCCCCCCchHHH----HHHHHHHHhcCCc
Q psy10958 62 STWEGIQAAKVLESEYG--IHCNLT-LLFAFAQAVACAEAGVTLISPYAPTEDPGVVSV----TKIYNYYKKFGYK 130 (321)
Q Consensus 62 aT~eGi~A~~~L~~~~G--I~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v----~~i~~~~~~~~~~ 130 (321)
..+-.++.+++|..+.| |++-.+ .|+|.+.|+.=..|||+.+..|...-..|...+ +.+-++++++||+
T Consensus 223 ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~ 298 (310)
T COG0167 223 LKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFE 298 (310)
T ss_pred chHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCCC
Confidence 23345788888887656 887776 899999999999999999999955444444444 4455666667554
No 133
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=66.88 E-value=72 Score=30.56 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=65.3
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE-----ecCC----------HHHHHHHHHHHHhhCceee
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK-----LAST----------WEGIQAAKVLESEYGIHCN 82 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK-----IPaT----------~eGi~A~~~L~~~~GI~vn 82 (321)
+++.+=.-|....+.|.+.+-|+.+.++....++ ..+.| =|-| ++||+-.++..+++|++|
T Consensus 9 ~~~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~---~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~Glpv- 84 (264)
T PRK05198 9 LPFFLIAGPCVIESRDLALRIAEHLKEITDKLGI---PYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPV- 84 (264)
T ss_pred CceEEEecCCcccCHHHHHHHHHHHHHHHHhcCC---CeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCce-
Confidence 3677777888888999999999999997665543 24555 2433 579999999999899999
Q ss_pred eeeccCHHHHHHHHHhcCceee
Q psy10958 83 LTLLFAFAQAVACAEAGVTLIS 104 (321)
Q Consensus 83 ~TlvFS~~Qa~aaa~Aga~~iS 104 (321)
+|=|.+..|+..+++. ++.+.
T Consensus 85 vTeV~~~~~~~~v~~~-~DilQ 105 (264)
T PRK05198 85 LTDVHEPEQAAPVAEV-VDVLQ 105 (264)
T ss_pred EEEeCCHHHHHHHHhh-CcEEE
Confidence 9999999999999996 66543
No 134
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=66.61 E-value=44 Score=32.38 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhccCC--CcEEEEecCC----cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE---------ecC-CHHH
Q psy10958 3 KLVILFGTEILNIIP--GRVSTEVDAR----LSFDKDASIAKAKKYIKMYEEAGIDKERILIK---------LAS-TWEG 66 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~--G~Vs~EV~p~----la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK---------IPa-T~eG 66 (321)
++..++.+.|.+.+. -.|.+-++|. -+.+. +++.++.+.+++.|++ -+-|- .|. ...-
T Consensus 205 rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~----~e~~~ia~~Le~~gvd--~iev~~g~~~~~~~~~~~~~~~ 278 (336)
T cd02932 205 RFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL----EDSVELAKALKELGVD--LIDVSSGGNSPAQKIPVGPGYQ 278 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCH----HHHHHHHHHHHHcCCC--EEEECCCCCCcccccCCCcccc
Confidence 466788888888773 3688887753 23344 4455555555555654 22221 232 1112
Q ss_pred HHHHHHHHHhhCceeeee-eccCHHHHHHHHHhc-Cceeec
Q psy10958 67 IQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAG-VTLISP 105 (321)
Q Consensus 67 i~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Ag-a~~iSp 105 (321)
+..++++.+..+|++-++ -++++.++..+.+.| +++|+.
T Consensus 279 ~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 279 VPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 456666665447888776 567999999999998 777654
No 135
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=66.55 E-value=1.2e+02 Score=28.66 Aligned_cols=123 Identities=18% Similarity=0.249 Sum_probs=76.3
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC-CHHHHHHHHHHHHhhCc-eeeeeecc-C---------HHHHHH
Q psy10958 27 RLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS-TWEGIQAAKVLESEYGI-HCNLTLLF-A---------FAQAVA 94 (321)
Q Consensus 27 ~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa-T~eGi~A~~~L~~~~GI-~vn~TlvF-S---------~~Qa~a 94 (321)
.+..+++..++-++.|.+. ||+ .|=+=.|+ ++.-.++++.+... +. ++.....- . ..-...
T Consensus 14 ~~~~s~e~k~~i~~~L~~~----Gv~--~IE~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 14 GISFSVEDKLRIARKLDEL----GVD--YIEGGWPGSNPKDTEFFARAKKL-KLKHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCCHHHHHHHHHHHHHc----CCC--EEEecCCcCCHHHHHHHHHHHHc-CCCCcEEEEEecccccCCCccchHHHHH
Confidence 3567899999888888876 665 55555565 66667888888754 53 23322211 0 113445
Q ss_pred HHHhcCceeecCC---------CCC---CCchHHHHHHHHHHHhcCCceEEeecc----cC-CHhHHHHH------hCCC
Q psy10958 95 CAEAGVTLISPYA---------PTE---DPGVVSVTKIYNYYKKFGYKTVVMGAS----FR-NTGEILAL------AGCD 151 (321)
Q Consensus 95 aa~Aga~~iSpf~---------~~~---d~Gi~~v~~i~~~~~~~~~~T~vl~AS----~r-~~~~v~~L------aG~d 151 (321)
+.++|++.+..|. ..+ +.-+..++++.++.+++|+...+-.-. .| +++++.++ +|++
T Consensus 87 a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~ 166 (273)
T cd07941 87 LLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGAD 166 (273)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCC
Confidence 7788988766551 111 234677888889999999877653322 24 35555542 5888
Q ss_pred eEEeC
Q psy10958 152 LMTIG 156 (321)
Q Consensus 152 ~vTip 156 (321)
.++++
T Consensus 167 ~i~l~ 171 (273)
T cd07941 167 WLVLC 171 (273)
T ss_pred EEEEe
Confidence 87654
No 136
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.40 E-value=1.2e+02 Score=28.82 Aligned_cols=119 Identities=19% Similarity=0.163 Sum_probs=79.9
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.++ .+.+-+|++-+.+.+. |.++.+.+++.++ .+|.=|..+..+...++|.+..+|++-+-
T Consensus 165 ~~~v~~lr~~~g-~~~l~vD~n~~~~~~~----A~~~~~~l~~~~l----~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E 235 (316)
T cd03319 165 IERIRAIREAAP-DARLRVDANQGWTPEE----AVELLRELAELGV----ELIEQPVPAGDDDGLAYLRDKSPLPIMADE 235 (316)
T ss_pred HHHHHHHHHhCC-CCeEEEeCCCCcCHHH----HHHHHHHHHhcCC----CEEECCCCCCCHHHHHHHHhcCCCCEEEeC
Confidence 456677777665 5667777777888754 5555554433332 36777776666666677775446665333
Q ss_pred eccCHHHHHHHHHhc-CceeecCCCCCCCchHHHHHHHHHHHhcCCceEEe
Q psy10958 85 LLFAFAQAVACAEAG-VTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVM 134 (321)
Q Consensus 85 lvFS~~Qa~aaa~Ag-a~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl 134 (321)
-+++..+...+.+.+ ++++.|= ....=|+....++.++-+++|.++-+-
T Consensus 236 ~~~~~~~~~~~~~~~~~d~v~~~-~~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 236 SCFSAADAARLAGGGAYDGINIK-LMKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred CCCCHHHHHHHHhcCCCCEEEEe-ccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 589999999888875 5677664 112247999999999999999877653
No 137
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=66.33 E-value=78 Score=31.30 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=57.0
Q ss_pred HHHHHHHHhccCC----CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC--------------HHH
Q psy10958 5 VILFGTEILNIIP----GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST--------------WEG 66 (321)
Q Consensus 5 ~v~~~~~i~~~~~----G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT--------------~eG 66 (321)
+..+...|.+..+ ..+++|++|..- +. ...+.+++.|++ ||-|=|-+. .+-
T Consensus 74 L~~ll~~i~~~f~~~~~~eit~E~~P~~i-~~--------e~L~~l~~~Gvn--rislGvQS~~d~vL~~l~R~~~~~~~ 142 (380)
T PRK09057 74 VAALLDAIARLWPVADDIEITLEANPTSV-EA--------GRFRGYRAAGVN--RVSLGVQALNDADLRFLGRLHSVAEA 142 (380)
T ss_pred HHHHHHHHHHhCCCCCCccEEEEECcCcC-CH--------HHHHHHHHcCCC--EEEEecccCCHHHHHHcCCCCCHHHH
Confidence 4455555555432 379999999532 22 223334455765 555544433 245
Q ss_pred HHHHHHHHHhhCceeeeeeccCH-HHHH--------HHHHhcCceeecC
Q psy10958 67 IQAAKVLESEYGIHCNLTLLFAF-AQAV--------ACAEAGVTLISPY 106 (321)
Q Consensus 67 i~A~~~L~~~~GI~vn~TlvFS~-~Qa~--------aaa~Aga~~iSpf 106 (321)
++|++.+.+. ++++|+.++|++ .|.. .+.+.++..||.|
T Consensus 143 ~~ai~~~~~~-~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y 190 (380)
T PRK09057 143 LAAIDLAREI-FPRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLY 190 (380)
T ss_pred HHHHHHHHHh-CccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEee
Confidence 7888888876 999999999994 4443 3445578888888
No 138
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=66.13 E-value=12 Score=35.74 Aligned_cols=122 Identities=18% Similarity=0.304 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhccCC-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--HH-------------
Q psy10958 3 KLVILFGTEILNIIP-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--EG------------- 66 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--eG------------- 66 (321)
.+..+++++|++.++ =+|-.=| .+.|+-- .-.++.+..++.|+.+ ++-.|..- .|
T Consensus 66 ~iv~em~~eiLp~v~~tPViaGv---~atDP~~---~~~~fl~~lk~~Gf~G---V~NfPTvgliDG~fR~~LEe~Gmgy 136 (268)
T PF09370_consen 66 EIVMEMAREILPVVKDTPVIAGV---CATDPFR---DMDRFLDELKELGFSG---VQNFPTVGLIDGQFRQNLEETGMGY 136 (268)
T ss_dssp HHHHHHHHHHGGG-SSS-EEEEE----TT-TT-----HHHHHHHHHHHT-SE---EEE-S-GGG--HHHHHHHHHTT--H
T ss_pred HHHHHHHHhhhhhccCCCEEEEe---cCcCCCC---cHHHHHHHHHHhCCce---EEECCcceeeccHHHHHHHhcCCCH
Confidence 467899999999987 5888887 3445432 2223444445556643 45567432 11
Q ss_pred ---HHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC-C-----CCCC-------CchHHHHHHHHHHHhcCCc
Q psy10958 67 ---IQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY-A-----PTED-------PGVVSVTKIYNYYKKFGYK 130 (321)
Q Consensus 67 ---i~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf-~-----~~~d-------~Gi~~v~~i~~~~~~~~~~ 130 (321)
++.++.-... |+-+ +-.+|+.+||.+-++||++++.+. + ..+. ..+..+.++++..++.+.+
T Consensus 137 ~~EVemi~~A~~~-gl~T-~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~d 214 (268)
T PF09370_consen 137 DREVEMIRKAHEK-GLFT-TAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPD 214 (268)
T ss_dssp HHHHHHHHHHHHT-T-EE---EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHHHHC-CCee-eeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 5677777765 8876 567999999999999999999888 1 1111 2344455555555566666
Q ss_pred eEEee
Q psy10958 131 TVVMG 135 (321)
Q Consensus 131 T~vl~ 135 (321)
..+|.
T Consensus 215 ii~l~ 219 (268)
T PF09370_consen 215 IIVLC 219 (268)
T ss_dssp -EEEE
T ss_pred eEEEE
Confidence 65554
No 139
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=65.62 E-value=45 Score=31.46 Aligned_cols=80 Identities=21% Similarity=0.200 Sum_probs=59.2
Q ss_pred HHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH------HH----------HHHHHHH
Q psy10958 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE------GI----------QAAKVLE 74 (321)
Q Consensus 11 ~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e------Gi----------~A~~~L~ 74 (321)
.|.+.+..++-+|.+| +++|++-|.++ +|.-+-=||-.++ |+ +.++.|+
T Consensus 59 ~L~~~~~~~lNlE~a~-----~~em~~ia~~~----------kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~ 123 (239)
T PRK05265 59 LLRETLKTELNLEMAA-----TEEMLDIALEV----------KPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLK 123 (239)
T ss_pred HHHHhcCCCEEeccCC-----CHHHHHHHHHC----------CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHH
Confidence 4455556688889865 46788877765 2455555885443 43 5689999
Q ss_pred HhhCceeeeeeccCHHHHHHHHHhcCceeecC
Q psy10958 75 SEYGIHCNLTLLFAFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 75 ~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf 106 (321)
+. ||+|-+=.==..+|..+|.+.|++.|-.|
T Consensus 124 ~~-gIrVSLFidP~~~qi~~A~~~GAd~VELh 154 (239)
T PRK05265 124 DA-GIRVSLFIDPDPEQIEAAAEVGADRIELH 154 (239)
T ss_pred HC-CCEEEEEeCCCHHHHHHHHHhCcCEEEEe
Confidence 87 99998877789999999999999877555
No 140
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=65.39 E-value=74 Score=29.68 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=65.7
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHHH----HHHHHH-HH-hhCceeeeeeccCH
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEGI----QAAKVL-ES-EYGIHCNLTLLFAF 89 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eGi----~A~~~L-~~-~~GI~vn~TlvFS~ 89 (321)
.|++.+.-....+.+.+++-++++.+. |+ +.|.|+=. .||+-+ +.+++- .. ..|+++.-|+=.++
T Consensus 127 ~v~~~~~~~~~~~~~~~~~~~~~~~~~----G~--d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~ 200 (263)
T cd07943 127 DVVGFLMMSHMASPEELAEQAKLMESY----GA--DCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAV 200 (263)
T ss_pred eEEEEEEeccCCCHHHHHHHHHHHHHc----CC--CEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHH
Confidence 344443212446778888877777664 44 35554310 344433 233332 11 13888899999999
Q ss_pred HHHHHHHHhcCcee--ecCCCCCCCchHHHHHHHHHHHhcCCceE
Q psy10958 90 AQAVACAEAGVTLI--SPYAPTEDPGVVSVTKIYNYYKKFGYKTV 132 (321)
Q Consensus 90 ~Qa~aaa~Aga~~i--Spf~~~~d~Gi~~v~~i~~~~~~~~~~T~ 132 (321)
.-+++|.++|++++ |.++--+..|-.....+..+++..|++|.
T Consensus 201 AN~laAi~aGa~~vd~s~~GlG~~aGN~~~E~lv~~L~~~g~~~~ 245 (263)
T cd07943 201 ANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLERMGIETG 245 (263)
T ss_pred HHHHHHHHhCCCEEEeecccccCCcCCccHHHHHHHHHhcCCCCC
Confidence 99999999999876 33433334666666666666776666653
No 141
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=65.28 E-value=90 Score=31.13 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=83.9
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.+...+.+-||+.-+++.+..++-++.|..+ ++ .+|-=|..+.-+...+.|.+..++++.+-
T Consensus 192 i~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~----~~----~~iEeP~~~~d~~~~~~L~~~~~iPIa~gE 263 (385)
T cd03326 192 LRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPY----GL----RWYEEPGDPLDYALQAELADHYDGPIATGE 263 (385)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCc----CC----CEEECCCCccCHHHHHHHHhhCCCCEEcCC
Confidence 4566677776655678888888888887666655555432 21 26777777777888888876546776555
Q ss_pred eccCHHHHHHHHHhcC-----ceeecCCCCCCCchHHHHHHHHHHHhcCCce
Q psy10958 85 LLFAFAQAVACAEAGV-----TLISPYAPTEDPGVVSVTKIYNYYKKFGYKT 131 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga-----~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T 131 (321)
-+|+..++....+.|+ +++.|-. .---|+.-.+++..+-+.+|.+.
T Consensus 264 s~~~~~~~~~li~~~a~~~~~div~~d~-~~~GGit~~~kia~lA~a~gi~~ 314 (385)
T cd03326 264 NLFSLQDARNLLRYGGMRPDRDVLQFDP-GLSYGLPEYLRMLDVLEAHGWSR 314 (385)
T ss_pred CcCCHHHHHHHHHhCCccccCCEEEeCc-hhhCCHHHHHHHHHHHHHcCCCC
Confidence 5789999999999875 6777741 11248999999999999998763
No 142
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=64.79 E-value=85 Score=31.84 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=77.9
Q ss_pred cCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH-HHHHHHHH-HhhCc--eeee-eeccCHH-HHHHHHHh
Q psy10958 25 DARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG-IQAAKVLE-SEYGI--HCNL-TLLFAFA-QAVACAEA 98 (321)
Q Consensus 25 ~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG-i~A~~~L~-~~~GI--~vn~-TlvFS~~-Qa~aaa~A 98 (321)
+|..+.++++=++-|+.|.++ |+ +.|=+=-|...+| .++++.+. .. |+ .+.. .+..... -..++.++
T Consensus 16 ~~g~~~s~e~Ki~Ia~~Ld~l----Gv--~~IE~g~p~~s~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~ea~~~a 88 (409)
T COG0119 16 APGVSFSVEEKIRIAKALDDL----GV--DYIEAGFPVASPGDFEFVRAIAEKA-GLFICALIAALARAIKRDIEALLEA 88 (409)
T ss_pred CCCCcCCHHHHHHHHHHHHHc----CC--CEEEEeCCcCChhhHHHHHHHHHhc-CcccchhhhhhHHhHHhhHHHHHhC
Confidence 355677888888888888876 66 4888999987765 33444444 33 55 3333 2233333 44567777
Q ss_pred cCceeecCC-----------CCC-CCchHHHHHHHHHHHhcCCceE--EeecccCCHhHHHH------HhCCCeEEe
Q psy10958 99 GVTLISPYA-----------PTE-DPGVVSVTKIYNYYKKFGYKTV--VMGASFRNTGEILA------LAGCDLMTI 155 (321)
Q Consensus 99 ga~~iSpf~-----------~~~-d~Gi~~v~~i~~~~~~~~~~T~--vl~AS~r~~~~v~~------LaG~d~vTi 155 (321)
|+..|..|. +.. .--+..+++..+|.+.+|..+. ..-++-.+++++.+ -.||+.|.+
T Consensus 89 ~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 89 GVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 888888881 111 1347778889999999997776 34444455666554 246776644
No 143
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=64.33 E-value=1.6e+02 Score=29.45 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=63.0
Q ss_pred HHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecC------CCC-CCCchH---HHHHHHH----HHHhcCC-ceEEe
Q psy10958 70 AKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY------APT-EDPGVV---SVTKIYN----YYKKFGY-KTVVM 134 (321)
Q Consensus 70 ~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf------~~~-~d~Gi~---~v~~i~~----~~~~~~~-~T~vl 134 (321)
+.++.++.+|++-+--++|.+.+..+.++||+.|.-. .+. ...|+. .+.++.. |+++.+. ..-|+
T Consensus 180 l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVI 259 (369)
T TIGR01304 180 LKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVI 259 (369)
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 4444444589998777999999999999999987622 111 112333 3333332 4555552 23444
Q ss_pred e-cccCCHhHHHH--HhCCCeEEeCHHHHHHHhc
Q psy10958 135 G-ASFRNTGEILA--LAGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 135 ~-AS~r~~~~v~~--LaG~d~vTipp~~l~~l~~ 165 (321)
+ -++++..++.. .+|+|.+.+.-.++..-..
T Consensus 260 AdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Ea 293 (369)
T TIGR01304 260 ADGGIETSGDLVKAIACGADAVVLGSPLARAAEA 293 (369)
T ss_pred EeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcC
Confidence 4 46999999997 4799999998887766544
No 144
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=64.10 E-value=29 Score=32.65 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=59.5
Q ss_pred HHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH------HH----------HHHHHHH
Q psy10958 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE------GI----------QAAKVLE 74 (321)
Q Consensus 11 ~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e------Gi----------~A~~~L~ 74 (321)
.+.+.+..++-+|.+| +++|++-|.++. |.-+-=||-.++ |+ +.++.|+
T Consensus 56 ~l~~~~~~~lNlE~a~-----~~emi~ia~~vk----------P~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~ 120 (237)
T TIGR00559 56 DLKEALTTPFNIEMAP-----TEEMIRIAEEIK----------PEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFH 120 (237)
T ss_pred HHHHHcCCCEEeccCC-----CHHHHHHHHHcC----------CCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHH
Confidence 4555566688899865 578888776653 444445785443 43 5689999
Q ss_pred HhhCceeeeeeccCHHHHHHHHHhcCceeecC
Q psy10958 75 SEYGIHCNLTLLFAFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 75 ~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf 106 (321)
+. ||+|-+=.==..+|..+|.+.||++|-.|
T Consensus 121 ~~-gI~VSLFiDP~~~qi~~A~~~GAd~VELh 151 (237)
T TIGR00559 121 AA-GIEVSLFIDADKDQISAAAEVGADRIEIH 151 (237)
T ss_pred HC-CCEEEEEeCCCHHHHHHHHHhCcCEEEEe
Confidence 87 99998877778999999999999977655
No 145
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=63.92 E-value=67 Score=34.11 Aligned_cols=82 Identities=28% Similarity=0.287 Sum_probs=56.4
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH-HHHHHHHHHh----hCceeeeeeccC
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG-IQAAKVLESE----YGIHCNLTLLFA 88 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG-i~A~~~L~~~----~GI~vn~TlvFS 88 (321)
.+.++...+|. ++.+..++-++++.+. |+ +.|+||=. .+|.- -+-++.|.+. .|++++-|.=.+
T Consensus 140 ~~~i~~t~~p~--~t~~~~~~~a~~l~~~----Ga--d~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla 211 (592)
T PRK09282 140 QGTISYTTSPV--HTIEKYVELAKELEEM----GC--DSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLA 211 (592)
T ss_pred EEEEEeccCCC--CCHHHHHHHHHHHHHc----CC--CEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcH
Confidence 35566666774 6788899999988775 55 47777732 12222 2233344332 278888899999
Q ss_pred HHHHHHHHHhcCcee----ecC
Q psy10958 89 FAQAVACAEAGVTLI----SPY 106 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~i----Spf 106 (321)
+.-+++|++|||+++ +||
T Consensus 212 ~An~laAv~aGad~vD~ai~g~ 233 (592)
T PRK09282 212 PMTYLKAVEAGVDIIDTAISPL 233 (592)
T ss_pred HHHHHHHHHhCCCEEEeecccc
Confidence 999999999999754 677
No 146
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.89 E-value=40 Score=30.13 Aligned_cols=139 Identities=10% Similarity=0.011 Sum_probs=80.6
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE-----------------ecCCHHHHH
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK-----------------LASTWEGIQ 68 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK-----------------IPaT~eGi~ 68 (321)
+++...+++. |-=.+|+.-+ ..+..+.++.++++..... .....+- +|.. |..
T Consensus 27 ~~~~~~~~~~--Gv~~vqlr~k-~~~~~e~~~~~~~~~~~~~-----~g~gtvl~~d~~~~A~~~gAdgv~~p~~--~~~ 96 (187)
T PRK07455 27 LQMAEAVAAG--GMRLIEITWN-SDQPAELISQLREKLPECI-----IGTGTILTLEDLEEAIAAGAQFCFTPHV--DPE 96 (187)
T ss_pred HHHHHHHHHC--CCCEEEEeCC-CCCHHHHHHHHHHhCCCcE-----EeEEEEEcHHHHHHHHHcCCCEEECCCC--CHH
Confidence 3455555554 6778888432 3466778888877655321 0111111 2222 222
Q ss_pred HHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--
Q psy10958 69 AAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA-- 146 (321)
Q Consensus 69 A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~-- 146 (321)
-++..... |+..-. .++|+.|+..|.++|++|+..|.-..-.|...++.+...+ .+..+++..=-+.+.+.+
T Consensus 97 ~~~~~~~~-~~~~i~-G~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~----~~ipvvaiGGI~~~n~~~~l 170 (187)
T PRK07455 97 LIEAAVAQ-DIPIIP-GALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPL----GHIPLIPTGGVTLENAQAFI 170 (187)
T ss_pred HHHHHHHc-CCCEEc-CcCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhhC----CCCcEEEeCCCCHHHHHHHH
Confidence 23333333 676533 3899999999999999999999532234677766665543 235567664334444444
Q ss_pred HhCCCeEEeCHHHH
Q psy10958 147 LAGCDLMTIGPKLL 160 (321)
Q Consensus 147 LaG~d~vTipp~~l 160 (321)
-+|++.+.+.-.++
T Consensus 171 ~aGa~~vav~s~i~ 184 (187)
T PRK07455 171 QAGAIAVGLSGQLF 184 (187)
T ss_pred HCCCeEEEEehhcc
Confidence 28999886655443
No 147
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.77 E-value=80 Score=28.18 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=73.8
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHH
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAE 97 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~ 97 (321)
.+|..-+. ..+.+..++.++.+++- |+.-=.+-.|-|...+=++.++++.. .+.+-...++...|+..|.+
T Consensus 12 ~~~~~v~r---~~~~~~~~~~~~~~~~~----Gv~~vqlr~k~~~~~e~~~~~~~~~~--~~~~g~gtvl~~d~~~~A~~ 82 (187)
T PRK07455 12 HRAIAVIR---APDLELGLQMAEAVAAG----GMRLIEITWNSDQPAELISQLREKLP--ECIIGTGTILTLEDLEEAIA 82 (187)
T ss_pred CCEEEEEE---cCCHHHHHHHHHHHHHC----CCCEEEEeCCCCCHHHHHHHHHHhCC--CcEEeEEEEEcHHHHHHHHH
Confidence 34444452 35787778877777764 55422333444544454555555442 34455667888899999999
Q ss_pred hcCcee-ecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEe-------CHHHHHHHhc
Q psy10958 98 AGVTLI-SPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI-------GPKLLEELEN 165 (321)
Q Consensus 98 Aga~~i-Spf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTi-------pp~~l~~l~~ 165 (321)
+|++++ +|- .++.+. .+-+.++.. .+++ ..++.++.+ ..|+|++-+ +++.++++..
T Consensus 83 ~gAdgv~~p~---~~~~~~------~~~~~~~~~-~i~G--~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~ 148 (187)
T PRK07455 83 AGAQFCFTPH---VDPELI------EAAVAQDIP-IIPG--ALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQG 148 (187)
T ss_pred cCCCEEECCC---CCHHHH------HHHHHcCCC-EEcC--cCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHh
Confidence 999855 553 122222 222223332 3555 678888876 479999833 3455555554
No 148
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.22 E-value=35 Score=32.76 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=51.9
Q ss_pred eccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcC--CceEEeecccCCHhHHHHH--hCCCeEEeCH
Q psy10958 85 LLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFG--YKTVVMGASFRNTGEILAL--AGCDLMTIGP 157 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~--~~T~vl~AS~r~~~~v~~L--aG~d~vTipp 157 (321)
-+=|++|+..|+++|+++| ..++.....++++..+++..+ .+..+.++.=-|.+.|.+. .|+|.+.++.
T Consensus 188 Ev~~leea~~a~~agaDiI----~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 188 EVESLEDALKAAKAGADII----MLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred EeCCHHHHHHHHHcCcCEE----EECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 3459999999999999866 356667888999999888866 3455555544577777773 6999986665
No 149
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=63.20 E-value=93 Score=28.37 Aligned_cols=87 Identities=23% Similarity=0.198 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhCceeeeee--ccC--------HHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEe
Q psy10958 65 EGIQAAKVLESEYGIHCNLTL--LFA--------FAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVM 134 (321)
Q Consensus 65 eGi~A~~~L~~~~GI~vn~Tl--vFS--------~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl 134 (321)
.-+.+++.+++. |+.+.+.+ +|. .+.+..+.++|++.+....-.+..--..+.++++.+++.-.+ ..+
T Consensus 116 ~~~~~i~~a~~~-G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~-~~~ 193 (265)
T cd03174 116 NAEEAIEAAKEA-GLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD-VPL 193 (265)
T ss_pred HHHHHHHHHHHC-CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC-CeE
Confidence 456778888875 98887777 566 667778888999877754322222223455555555554332 334
Q ss_pred ecccCCHh------HHHH-HhCCCeE
Q psy10958 135 GASFRNTG------EILA-LAGCDLM 153 (321)
Q Consensus 135 ~AS~r~~~------~v~~-LaG~d~v 153 (321)
+.-+.|.. .+.+ .+|++.|
T Consensus 194 ~~H~Hn~~gla~an~laA~~aG~~~i 219 (265)
T cd03174 194 GLHTHNTLGLAVANSLAALEAGADRV 219 (265)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEE
Confidence 44344332 2222 4788887
No 150
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=63.17 E-value=1.1e+02 Score=32.23 Aligned_cols=143 Identities=13% Similarity=0.082 Sum_probs=92.3
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHH----HcCCCC-Cc-eEEEecCCHHHHHHHHHHHHhhCceeeeeeccCHHH
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYE----EAGIDK-ER-ILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQ 91 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~----~~gi~~-~n-v~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Q 91 (321)
|.+.+-+ |. -.+.++ +++++++.+.+. +.+... ++ .+.=.=-|++++..+.++.+ |+..-.-.-..+.|
T Consensus 383 G~~~Im~-Pm-V~t~eE-~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~--~vDf~sIGtnDLsq 457 (565)
T TIGR01417 383 GKLRIMF-PM-VATVEE-IRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAK--EVDFFSIGTNDLTQ 457 (565)
T ss_pred CCCeEEe-cC-CCCHHH-HHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHh--hCCEEEEChhHHHH
Confidence 7888877 43 345544 333444443322 233332 22 12222257888888888874 78888888899999
Q ss_pred HHHHHHhcCceeecCCCCCCCc-hHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEEeCHHHHHHHhc
Q psy10958 92 AVACAEAGVTLISPYAPTEDPG-VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 92 a~aaa~Aga~~iSpf~~~~d~G-i~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vTipp~~l~~l~~ 165 (321)
+..|+.-+-.+++.+....+|. ...++.+.+.-+++|...-+.+---.++..+..+ .|.+.+.++|..+..+..
T Consensus 458 y~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~i~~~k~ 534 (565)
T TIGR01417 458 YTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSILRIKM 534 (565)
T ss_pred HHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHhHHHHHH
Confidence 9998887666555443345666 4566778888888887777645444567766664 699999999977766554
No 151
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=63.12 E-value=1.4e+02 Score=29.24 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=87.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHh--hCceeee
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESE--YGIHCNL 83 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~--~GI~vn~ 83 (321)
++..+.+++.+...+.+-||+.-+++.+..++-+++|..+ ++ .++-=|.-++.+...++|... .+|++.+
T Consensus 169 ~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~----~~----~~~EeP~~~~d~~~~~~l~~~~~~~iPIa~ 240 (352)
T cd03328 169 PDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADE----GV----TWFEEPVSSDDLAGLRLVRERGPAGMDIAA 240 (352)
T ss_pred HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHh----Cc----chhhCCCChhhHHHHHHHHhhCCCCCCEEe
Confidence 4566777777766788889988889987777777766553 22 255657767777788888765 4678776
Q ss_pred e-eccCHHHHHHHHHhc-CceeecCCCCCCCchHHHHHHHHHHHhcCCceEEe
Q psy10958 84 T-LLFAFAQAVACAEAG-VTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVM 134 (321)
Q Consensus 84 T-lvFS~~Qa~aaa~Ag-a~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl 134 (321)
- -+||..++....+.| ++++.|-. .---|+.-.+++..+-+.+|.+.-..
T Consensus 241 gE~~~~~~~~~~li~~~a~div~~d~-~~~GGit~~~~ia~~A~a~gi~~~~h 292 (352)
T cd03328 241 GEYAYTLAYFRRLLEAHAVDVLQADV-TRCGGVTGFLQAAALAAAHHVDLSAH 292 (352)
T ss_pred cccccCHHHHHHHHHcCCCCEEecCc-cccCCHHHHHHHHHHHHHcCCeeccC
Confidence 6 478999999999987 46776641 12247899999999999998765543
No 152
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.70 E-value=17 Score=33.03 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=69.2
Q ss_pred ceEEEecCCH-------HHHHHHHHHHHhhCceeeeeec---c---CHHHHH-HHHHhcCceee--cCC-CCCCCchHHH
Q psy10958 55 RILIKLASTW-------EGIQAAKVLESEYGIHCNLTLL---F---AFAQAV-ACAEAGVTLIS--PYA-PTEDPGVVSV 117 (321)
Q Consensus 55 nv~IKIPaT~-------eGi~A~~~L~~~~GI~vn~Tlv---F---S~~Qa~-aaa~Aga~~iS--pf~-~~~d~Gi~~v 117 (321)
=|=||=|+-- .=|+.++++..+ .-.+.+|.= | +..+|. -|+-+|++||- .|+ ......+...
T Consensus 23 IiDVKNP~EGSLGANFPWvIr~i~Ev~p~-d~~vSAT~GDvpYKPGT~slAalGaav~GaDYiKVGLYg~kn~~eA~e~m 101 (235)
T COG1891 23 IIDVKNPAEGSLGANFPWVIREIREVVPE-DQEVSATVGDVPYKPGTASLAALGAAVAGADYIKVGLYGTKNEEEALEVM 101 (235)
T ss_pred eEeccCcccCcccCCChHHHHHHHHhCcc-ceeeeeeecCCCCCCchHHHHHHHhHhhCCceEEEeecccccHHHHHHHH
Confidence 4557767532 238999999887 677777752 3 344443 35667999974 453 4556789999
Q ss_pred HHHHHHHHhcCCceEEeecccCCHh-----------HHHHHhCCCeE
Q psy10958 118 TKIYNYYKKFGYKTVVMGASFRNTG-----------EILALAGCDLM 153 (321)
Q Consensus 118 ~~i~~~~~~~~~~T~vl~AS~r~~~-----------~v~~LaG~d~v 153 (321)
+.+.+..+.++++++|.+|.+-+.. ++.+-+|||.+
T Consensus 102 ~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~Dva 148 (235)
T COG1891 102 KNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVA 148 (235)
T ss_pred HHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEE
Confidence 9999999999999999999875543 33345677765
No 153
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=62.63 E-value=1.4e+02 Score=28.18 Aligned_cols=79 Identities=14% Similarity=0.036 Sum_probs=58.9
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC---------HHHHHHHHHHHHhhCceeeeeeccC
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST---------WEGIQAAKVLESEYGIHCNLTLLFA 88 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT---------~eGi~A~~~L~~~~GI~vn~TlvFS 88 (321)
|...+=.-|...++.+.+++.|+++.+...+... ..+-| |-| .+|++.+++...+.||.+ +|-+|+
T Consensus 24 ~~~~~IAGpc~ie~~~~~~~~A~~lk~~~~k~~r---~~~~K-pRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~-~t~~~d 98 (260)
T TIGR01361 24 GSPIVIAGPCSVESEEQIMETARFVKEAGAKILR---GGAFK-PRTSPYSFQGLGEEGLKLLRRAADEHGLPV-VTEVMD 98 (260)
T ss_pred CcEEEEEeCCccCCHHHHHHHHHHHHHHHHHhcc---Cceec-CCCCCccccccHHHHHHHHHHHHHHhCCCE-EEeeCC
Confidence 3344455688899999999999999987654322 23334 332 368888888888789999 888999
Q ss_pred HHHHHHHHHhcCce
Q psy10958 89 FAQAVACAEAGVTL 102 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~ 102 (321)
..|+-.+.+. +++
T Consensus 99 ~~~~~~l~~~-~d~ 111 (260)
T TIGR01361 99 PRDVEIVAEY-ADI 111 (260)
T ss_pred hhhHHHHHhh-CCE
Confidence 9999999886 653
No 154
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=62.60 E-value=60 Score=29.54 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=62.5
Q ss_pred ecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccC
Q psy10958 60 LASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFR 139 (321)
Q Consensus 60 IPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r 139 (321)
.|.+...+. +..... |+.+-.. ++|++|+..|.++|++|+..|.. ..-|...++.+...+. .+..+++..=-
T Consensus 89 sp~~~~~v~--~~~~~~-~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa-~~~G~~~l~~l~~~~~---~~ipvvaiGGI 160 (206)
T PRK09140 89 TPNTDPEVI--RRAVAL-GMVVMPG-VATPTEAFAALRAGAQALKLFPA-SQLGPAGIKALRAVLP---PDVPVFAVGGV 160 (206)
T ss_pred CCCCCHHHH--HHHHHC-CCcEEcc-cCCHHHHHHHHHcCCCEEEECCC-CCCCHHHHHHHHhhcC---CCCeEEEECCC
Confidence 355554433 333344 8877666 99999999999999999998853 2356666666655542 13556665533
Q ss_pred CHhHHHH--HhCCCeEEeCHHHHH
Q psy10958 140 NTGEILA--LAGCDLMTIGPKLLE 161 (321)
Q Consensus 140 ~~~~v~~--LaG~d~vTipp~~l~ 161 (321)
+.+.+.+ -+|++.+.+.-.++.
T Consensus 161 ~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 161 TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CHHHHHHHHHCCCeEEEEehHhcc
Confidence 6666666 369999987777644
No 155
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=62.14 E-value=63 Score=30.86 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=58.1
Q ss_pred ecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE-----ecCC----------HHHHHHHHHHHHhhCceeeeeeccC
Q psy10958 24 VDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK-----LAST----------WEGIQAAKVLESEYGIHCNLTLLFA 88 (321)
Q Consensus 24 V~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK-----IPaT----------~eGi~A~~~L~~~~GI~vn~TlvFS 88 (321)
.-|....+.+.+++-|+.+.+.....|+ ..+.| =|-| ++|++-.++..+++|++| +|=|.+
T Consensus 7 AGPCsvEs~e~~~~~A~~lk~~~~~~~~---~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpv-vTeV~~ 82 (258)
T TIGR01362 7 AGPCVIESEDHALRVAEKLKELTSKLGV---PFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPI-LTDVHE 82 (258)
T ss_pred ecCCcccCHHHHHHHHHHHHHHHHhcCC---CeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCce-EEEeCC
Confidence 3466666788899999999997655544 23444 2333 478999999998899999 999999
Q ss_pred HHHHHHHHHhcCceee
Q psy10958 89 FAQAVACAEAGVTLIS 104 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~iS 104 (321)
..|+..+++. ++++.
T Consensus 83 ~~~~~~vae~-vDilQ 97 (258)
T TIGR01362 83 SSQCEPVAEV-VDIIQ 97 (258)
T ss_pred HHHHHHHHhh-CcEEE
Confidence 9999999986 66543
No 156
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=62.02 E-value=1.2e+02 Score=27.27 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=55.9
Q ss_pred HHHHHHHHhhC-ceeeeeeccCHHHHHHHHHhcCceeecC--CCC------CCCchHHHHHHHHHHHhcCCceEEee-cc
Q psy10958 68 QAAKVLESEYG-IHCNLTLLFAFAQAVACAEAGVTLISPY--APT------EDPGVVSVTKIYNYYKKFGYKTVVMG-AS 137 (321)
Q Consensus 68 ~A~~~L~~~~G-I~vn~TlvFS~~Qa~aaa~Aga~~iSpf--~~~------~d~Gi~~v~~i~~~~~~~~~~T~vl~-AS 137 (321)
+-++.+.+. | +.+.+ -+.|.+++..+.++|++|+..+ ++. ..++...++.+.+.. +..+++ ..
T Consensus 113 ~~i~~~~~~-g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-----~ipvia~GG 185 (219)
T cd04729 113 ELIKRIHEE-YNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-----GIPVIAEGR 185 (219)
T ss_pred HHHHHHHHH-hCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc-----CCCEEEeCC
Confidence 455566654 6 76644 5789999999999999999664 211 123344455544432 344454 45
Q ss_pred cCCHhHHHH--HhCCCeEEeCHHHH
Q psy10958 138 FRNTGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 138 ~r~~~~v~~--LaG~d~vTipp~~l 160 (321)
+++.+++.. ..|+|.+-+.-.+.
T Consensus 186 I~~~~~~~~~l~~GadgV~vGsal~ 210 (219)
T cd04729 186 INSPEQAAKALELGADAVVVGSAIT 210 (219)
T ss_pred CCCHHHHHHHHHCCCCEEEEchHHh
Confidence 888888887 37999987776543
No 157
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.88 E-value=76 Score=30.71 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=60.0
Q ss_pred HHHHHHHHhhC-ceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH
Q psy10958 68 QAAKVLESEYG-IHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA 146 (321)
Q Consensus 68 ~A~~~L~~~~G-I~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~ 146 (321)
+|++++.+..+ .++ .--+=|++|+..|+++|+++|- .++-....++++...++..+.+..+.++.=-|.+.|.+
T Consensus 188 ~ai~~~r~~~~~~kI-eVEv~tl~ea~eal~~gaDiI~----LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~ 262 (289)
T PRK07896 188 AALRAVRAAAPDLPC-EVEVDSLEQLDEVLAEGAELVL----LDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAA 262 (289)
T ss_pred HHHHHHHHhCCCCCE-EEEcCCHHHHHHHHHcCCCEEE----eCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHH
Confidence 56666664312 232 3356799999999999998773 44555788899988887776666666665677888887
Q ss_pred --HhCCCeEEeCH
Q psy10958 147 --LAGCDLMTIGP 157 (321)
Q Consensus 147 --LaG~d~vTipp 157 (321)
..|+|.+.++.
T Consensus 263 yA~tGvD~Is~ga 275 (289)
T PRK07896 263 YAETGVDYLAVGA 275 (289)
T ss_pred HHhcCCCEEEeCh
Confidence 46899986665
No 158
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=61.61 E-value=1.5e+02 Score=28.19 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCC-CC-CCCchHHHHHHHHHHHhcCCceEEeeccc
Q psy10958 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA-PT-EDPGVVSVTKIYNYYKKFGYKTVVMGASF 138 (321)
Q Consensus 61 PaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~-~~-~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~ 138 (321)
|-.-+-++|+++|.++ |..|.-..-=.+-=+..--++||..+=|.+ .. ..-|+.+-..+.-+..+... ..|+=|.+
T Consensus 114 PD~~etl~Aae~Lv~e-GF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~V-PviVDAGi 191 (262)
T COG2022 114 PDPIETLKAAEQLVKE-GFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADV-PVIVDAGI 191 (262)
T ss_pred CChHHHHHHHHHHHhC-CCEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCC-CEEEeCCC
Confidence 6677899999999998 999987777777777888899999888883 22 23566665555555554422 34566888
Q ss_pred CCHhHHHH--HhCCCeEEeCH
Q psy10958 139 RNTGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 139 r~~~~v~~--LaG~d~vTipp 157 (321)
-.+.+... -.|||.|-+.-
T Consensus 192 G~pSdAa~aMElG~DaVL~NT 212 (262)
T COG2022 192 GTPSDAAQAMELGADAVLLNT 212 (262)
T ss_pred CChhHHHHHHhcccceeehhh
Confidence 77777665 47999985543
No 159
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=60.97 E-value=82 Score=32.53 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEecCC--HHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCceeec-----
Q psy10958 34 ASIAKAKKYIKMYEEAGIDKERILIKLAST--WEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLISP----- 105 (321)
Q Consensus 34 ~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT--~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~iSp----- 105 (321)
...+.++.|.+ .|++ -|+|-+.-- ..=+.+++.+++.+ ++.+-+--+-|.+++..+.++|+++|..
T Consensus 225 ~~~~ra~~Lv~----aGVd--~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~G 298 (475)
T TIGR01303 225 DVGGKAKALLD----AGVD--VLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPG 298 (475)
T ss_pred cHHHHHHHHHH----hCCC--EEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCC
Confidence 33444555554 3554 455554321 11256677777644 7888887799999999999999998863
Q ss_pred --C-CCC----CCCchHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 106 --Y-APT----EDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 106 --f-~~~----~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~ 158 (321)
+ .|. +-|-...+.++.+..++++ ..|++- .+|+..+|.. .+|+|.+.+.--
T Consensus 299 s~~ttr~~~~~g~~~~~a~~~~~~~~~~~~--~~viadGgi~~~~di~kala~GA~~vm~g~~ 359 (475)
T TIGR01303 299 AMCTTRMMTGVGRPQFSAVLECAAEARKLG--GHVWADGGVRHPRDVALALAAGASNVMVGSW 359 (475)
T ss_pred ccccCccccCCCCchHHHHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHcCCCEEeechh
Confidence 2 121 2244455555555556553 445543 5999999997 479999988754
No 160
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=60.83 E-value=1.5e+02 Score=27.80 Aligned_cols=141 Identities=13% Similarity=0.159 Sum_probs=73.1
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHH-HHH--cCCCCCceEEEec--CCHHH-HHHHHHHHHhhCceee--eeeccC
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKM-YEE--AGIDKERILIKLA--STWEG-IQAAKVLESEYGIHCN--LTLLFA 88 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~-~~~--~gi~~~nv~IKIP--aT~eG-i~A~~~L~~~~GI~vn--~TlvFS 88 (321)
+.++.+++ .+.+.+++++.|+.+.+. +.. .+++.||....-. -.++- .+.++.+.+..++++- +...++
T Consensus 98 ~~pvi~si---~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~ 174 (289)
T cd02810 98 GQPLIASV---GGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFD 174 (289)
T ss_pred CCeEEEEe---ccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Confidence 56888998 566888888888888764 111 1122222111000 01111 2334444432133333 234455
Q ss_pred ----HHHHHHHHHhcCceeecCCCC----------------CC---CchH----HHHHHHHHHHhcCCceEEeec-ccCC
Q psy10958 89 ----FAQAVACAEAGVTLISPYAPT----------------ED---PGVV----SVTKIYNYYKKFGYKTVVMGA-SFRN 140 (321)
Q Consensus 89 ----~~Qa~aaa~Aga~~iSpf~~~----------------~d---~Gi~----~v~~i~~~~~~~~~~T~vl~A-S~r~ 140 (321)
.+.+..+.++|++++...++. .. .|-. ....++++.+..+.+..|++. .+++
T Consensus 175 ~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 175 LEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 566777888899887754210 00 1211 122333333333224555554 5888
Q ss_pred HhHHHH--HhCCCeEEeCHHHH
Q psy10958 141 TGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 141 ~~~v~~--LaG~d~vTipp~~l 160 (321)
.+++.+ .+|+|.|-+.-.++
T Consensus 255 ~~da~~~l~~GAd~V~vg~a~~ 276 (289)
T cd02810 255 GEDVLEMLMAGASAVQVATALM 276 (289)
T ss_pred HHHHHHHHHcCccHheEcHHHH
Confidence 888887 47999886655444
No 161
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=60.81 E-value=48 Score=32.49 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC-------CHHH--HHHHHHH
Q psy10958 3 KLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS-------TWEG--IQAAKVL 73 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa-------T~eG--i~A~~~L 73 (321)
|++.++...|++.++.+|++-+++.-..+---..+++..+.+.+++.|+| -|-|-... ...| ...++++
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~i 270 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHI 270 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHH
Confidence 56778888888888888999888632111001345555666666666764 44443211 1123 4566677
Q ss_pred HHhhCceeeee-eccCHHHHHHHHHhc-Cceeec
Q psy10958 74 ESEYGIHCNLT-LLFAFAQAVACAEAG-VTLISP 105 (321)
Q Consensus 74 ~~~~GI~vn~T-lvFS~~Qa~aaa~Ag-a~~iSp 105 (321)
++..+|+|-++ -+.+++++..+.+.| ++.|+.
T Consensus 271 k~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 271 REHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred HhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 65447887655 456899999999987 776653
No 162
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=60.49 E-value=1.1e+02 Score=31.88 Aligned_cols=124 Identities=18% Similarity=0.248 Sum_probs=78.4
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC-CHHHHHHHHHHHHhhCc-eeeeeecc-C---------HHHHH
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS-TWEGIQAAKVLESEYGI-HCNLTLLF-A---------FAQAV 93 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa-T~eGi~A~~~L~~~~GI-~vn~TlvF-S---------~~Qa~ 93 (321)
|....++++.++-|+.|.++ ||+ .|=+=.|+ ++.-.++++.+.+. +. ++..+..- . -.-..
T Consensus 20 ~g~~~s~e~Kl~ia~~L~~~----Gvd--~IEvG~p~as~~d~~~~~~i~~~-~l~~~~i~~~~~~~~~~i~~~~d~~~e 92 (524)
T PRK12344 20 EGISFSVEDKLRIARKLDEL----GVD--YIEGGWPGSNPKDTEFFKRAKEL-KLKHAKLAAFGSTRRAGVSAEEDPNLQ 92 (524)
T ss_pred CCCCCCHHHHHHHHHHHHHc----CCC--EEEEcCCcCChhHHHHHHHHHHh-CCCCcEEEEEeeccccCCCcccHHHHH
Confidence 34678999999999988886 665 66666666 55557888888754 53 23332211 1 11234
Q ss_pred HHHHhcCceeecCCC---------CC---CCchHHHHHHHHHHHhcCCceEEeec----ccC-CHhHHHH------HhCC
Q psy10958 94 ACAEAGVTLISPYAP---------TE---DPGVVSVTKIYNYYKKFGYKTVVMGA----SFR-NTGEILA------LAGC 150 (321)
Q Consensus 94 aaa~Aga~~iSpf~~---------~~---d~Gi~~v~~i~~~~~~~~~~T~vl~A----S~r-~~~~v~~------LaG~ 150 (321)
++.++|+..+..|.. +. ..-+..++++.++.+++|++..+-.- ++| +++++.+ -+|+
T Consensus 93 ~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Ga 172 (524)
T PRK12344 93 ALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 172 (524)
T ss_pred HHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCC
Confidence 566778887777711 11 13467788889999999987665222 233 4555554 2699
Q ss_pred CeEEeC
Q psy10958 151 DLMTIG 156 (321)
Q Consensus 151 d~vTip 156 (321)
|.+.+|
T Consensus 173 d~i~l~ 178 (524)
T PRK12344 173 DWVVLC 178 (524)
T ss_pred CeEEEc
Confidence 998777
No 163
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=60.29 E-value=1.3e+02 Score=27.03 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=59.9
Q ss_pred ecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCC--C------CCchHHHHHHHHHHHhcCCce
Q psy10958 60 LASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPT--E------DPGVVSVTKIYNYYKKFGYKT 131 (321)
Q Consensus 60 IPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~--~------d~Gi~~v~~i~~~~~~~~~~T 131 (321)
+|.. +-..-++.+.+. |+.+ +..+.+..++..+.++|++|+...++. + .+....++++.+.. + ..
T Consensus 86 l~~~-~~~~~~~~~~~~-~i~~-i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~---~-~P 158 (236)
T cd04730 86 FSFG-PPAEVVERLKAA-GIKV-IPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---D-IP 158 (236)
T ss_pred EcCC-CCHHHHHHHHHc-CCEE-EEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh---C-CC
Confidence 4544 234556666654 8877 445778899999999999987654211 1 12233444443322 1 23
Q ss_pred EEeecccCCHhHHHH--HhCCCeEEeCHHHHHHHh
Q psy10958 132 VVMGASFRNTGEILA--LAGCDLMTIGPKLLEELE 164 (321)
Q Consensus 132 ~vl~AS~r~~~~v~~--LaG~d~vTipp~~l~~l~ 164 (321)
.+.+-.+++.+++.+ ..|+|.|-+.-.++....
T Consensus 159 vi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e 193 (236)
T cd04730 159 VIAAGGIADGRGIAAALALGADGVQMGTRFLATEE 193 (236)
T ss_pred EEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcc
Confidence 444556888777777 379999888766655543
No 164
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=59.43 E-value=74 Score=32.90 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecCCH--HHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCceee----cC-
Q psy10958 35 SIAKAKKYIKMYEEAGIDKERILIKLASTW--EGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLIS----PY- 106 (321)
Q Consensus 35 ~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~iS----pf- 106 (321)
..+.++.|.+ .|++ -|+|-+.--. -=+..++++++.+ ++.+-+-=|-+.+++..+.+||++.|. |=
T Consensus 228 ~~~~a~~Lv~----aGvd--~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gs 301 (479)
T PRK07807 228 VAAKARALLE----AGVD--VLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGA 301 (479)
T ss_pred HHHHHHHHHH----hCCC--EEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCc
Confidence 3344444444 3654 3555543322 2266777887764 566666678899999999999999987 62
Q ss_pred -------CCCCCCchHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHHH
Q psy10958 107 -------APTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPKL 159 (321)
Q Consensus 107 -------~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~ 159 (321)
...+.|-+..+.++.+.-+++ ...|++. .+++..++.. .+|+|.+-+.--+
T Consensus 302 ictt~~~~~~~~p~~~av~~~~~~~~~~--~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ 362 (479)
T PRK07807 302 MCTTRMMTGVGRPQFSAVLECAAAAREL--GAHVWADGGVRHPRDVALALAAGASNVMIGSWF 362 (479)
T ss_pred ccccccccCCchhHHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHcCCCeeeccHhh
Confidence 112235566666666665554 3556665 5899999987 3799998776553
No 165
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=59.38 E-value=1.4e+02 Score=26.96 Aligned_cols=86 Identities=12% Similarity=0.181 Sum_probs=55.9
Q ss_pred HHHHHHHH-hhCceeeeeeccCHHHHHHHHHhcCceeecCC--C------CCCCchHHHHHHHHHHHhcCCceEEee-cc
Q psy10958 68 QAAKVLES-EYGIHCNLTLLFAFAQAVACAEAGVTLISPYA--P------TEDPGVVSVTKIYNYYKKFGYKTVVMG-AS 137 (321)
Q Consensus 68 ~A~~~L~~-~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~--~------~~d~Gi~~v~~i~~~~~~~~~~T~vl~-AS 137 (321)
..++.+.+ . |+.+- .-+.+.+++..+.++|++|+.... . ...++...++++.+.. +..+++ -.
T Consensus 109 ~~i~~~~~~~-~i~vi-~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-----~iPvia~GG 181 (221)
T PRK01130 109 ELVKRIKEYP-GQLLM-ADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-----GCPVIAEGR 181 (221)
T ss_pred HHHHHHHhCC-CCeEE-EeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-----CCCEEEECC
Confidence 44555554 5 88875 456799999999999999986641 1 1113344444444432 333444 45
Q ss_pred cCCHhHHHHH--hCCCeEEeCHHHH
Q psy10958 138 FRNTGEILAL--AGCDLMTIGPKLL 160 (321)
Q Consensus 138 ~r~~~~v~~L--aG~d~vTipp~~l 160 (321)
+++.+++..+ .|+|.+.+...+.
T Consensus 182 I~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 182 INTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred CCCHHHHHHHHHCCCCEEEEchHhc
Confidence 8889988884 7999998875543
No 166
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=59.36 E-value=96 Score=30.58 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=54.3
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--------------HHHHHHH
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--------------EGIQAAK 71 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--------------eGi~A~~ 71 (321)
.++...|...-...+++|++|..- +. + ..+.+++.|++ |+-|=|-+.. +-++|++
T Consensus 78 ~~ll~~i~~~~~~eit~E~~P~~~-~~-~-------~l~~l~~~G~n--rislGvQS~~~~~L~~l~R~~~~~~~~~ai~ 146 (370)
T PRK06294 78 QDILKTLEAPHATEITLEANPENL-SE-S-------YIRALALTGIN--RISIGVQTFDDPLLKLLGRTHSSSKAIDAVQ 146 (370)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCC-CH-H-------HHHHHHHCCCC--EEEEccccCCHHHHHHcCCCCCHHHHHHHHH
Confidence 344444433333579999999643 22 1 23444455665 6666555443 3467888
Q ss_pred HHHHhhCc-eeeeeeccC-HHHHH--------HHHHhcCceeecC
Q psy10958 72 VLESEYGI-HCNLTLLFA-FAQAV--------ACAEAGVTLISPY 106 (321)
Q Consensus 72 ~L~~~~GI-~vn~TlvFS-~~Qa~--------aaa~Aga~~iSpf 106 (321)
.+.+. |+ ++|+.++|+ +.|-. .+.+.+..-+|.|
T Consensus 147 ~~~~~-g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y 190 (370)
T PRK06294 147 ECSEH-GFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLY 190 (370)
T ss_pred HHHHc-CCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEe
Confidence 88876 99 499999998 33322 3344467778777
No 167
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=58.32 E-value=1.7e+02 Score=27.88 Aligned_cols=97 Identities=11% Similarity=0.006 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHHHHHcC-----CCCCceEEEecCCHHHHHHHHHHHHhhCc---eeeeeeccCHHHHHHHHHhcCce
Q psy10958 31 DKDASIAKAKKYIKMYEEAG-----IDKERILIKLASTWEGIQAAKVLESEYGI---HCNLTLLFAFAQAVACAEAGVTL 102 (321)
Q Consensus 31 d~e~~i~~A~~L~~~~~~~g-----i~~~nv~IKIPaT~eGi~A~~~L~~~~GI---~vn~TlvFS~~Qa~aaa~Aga~~ 102 (321)
++++=++-++.|.++ | |+ .|=+ -+...+..++++++... |. .+...+.-...-...|.++|++.
T Consensus 19 ~~~~Kv~i~~~L~~~----G~~~~~v~--~IE~-~s~~~~d~~~v~~~~~~-~~~~~~v~~~~r~~~~die~A~~~g~~~ 90 (279)
T cd07947 19 TVEQIVKIYDYLHEL----GGGSGVIR--QTEF-FLYTEKDREAVEACLDR-GYKFPEVTGWIRANKEDLKLVKEMGLKE 90 (279)
T ss_pred CHHHHHHHHHHHHHc----CCCCCccc--eEEe-cCcChHHHHHHHHHHHc-CCCCCEEEEEecCCHHHHHHHHHcCcCE
Confidence 787777777777775 6 54 4444 34555667788887754 54 24444666777778888999987
Q ss_pred eecC------------CCCCCCchHHHHHHHHHHHhcCCceEEee
Q psy10958 103 ISPY------------APTEDPGVVSVTKIYNYYKKFGYKTVVMG 135 (321)
Q Consensus 103 iSpf------------~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~ 135 (321)
+..| ++.-+.-+..++++.++.+.+|..+++-.
T Consensus 91 v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 91 TGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred EEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7777 11122456778888899999987766544
No 168
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=57.77 E-value=1.3e+02 Score=26.88 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=48.1
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE---------ecCCHHHHHHHHHHH
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK---------LASTWEGIQAAKVLE 74 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK---------IPaT~eGi~A~~~L~ 74 (321)
+..++.+.+.+.++-+|++-++. +.+.+ .++.++.+.+++.|++ -+.|- -|.. +..++++.
T Consensus 110 ~~~eii~~v~~~~~~~v~vk~r~--~~~~~---~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~---~~~~~~i~ 179 (231)
T cd02801 110 LVAEIVRAVREAVPIPVTVKIRL--GWDDE---EETLELAKALEDAGAS--ALTVHGRTREQRYSGPAD---WDYIAEIK 179 (231)
T ss_pred HHHHHHHHHHHhcCCCEEEEEee--ccCCc---hHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCC---HHHHHHHH
Confidence 45666666766555566666643 33332 3344444444444553 23221 1233 34444444
Q ss_pred HhhCceeeee-eccCHHHHHHHHHh-cCceeec
Q psy10958 75 SEYGIHCNLT-LLFAFAQAVACAEA-GVTLISP 105 (321)
Q Consensus 75 ~~~GI~vn~T-lvFS~~Qa~aaa~A-ga~~iSp 105 (321)
+..++++-+. -+.|.+++..+.+. |++.+..
T Consensus 180 ~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 180 EAVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred hCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 3335666665 36688888888887 6765543
No 169
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.42 E-value=2.2e+02 Score=28.86 Aligned_cols=119 Identities=18% Similarity=0.323 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEecC--CHHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCceee----c
Q psy10958 33 DASIAKAKKYIKMYEEAGIDKERILIKLAS--TWEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLIS----P 105 (321)
Q Consensus 33 e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa--T~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~iS----p 105 (321)
+++.+++..|++. |++ -|+|-.-. ...-+..++.+++.+ ++.+-+--|-|.+++..+.++|+++|. |
T Consensus 152 ~~~~~~v~~lv~a----GvD--vI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~ 225 (404)
T PRK06843 152 IDTIERVEELVKA----HVD--ILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGP 225 (404)
T ss_pred HHHHHHHHHHHhc----CCC--EEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCC
Confidence 3477888888885 443 55554322 223356677777653 455656679999999999999999874 2
Q ss_pred C----CC----CCCCchHHHHHHHHHHHhcCCceEEeecc-cCCHhHHHH--HhCCCeEEeCHHH
Q psy10958 106 Y----AP----TEDPGVVSVTKIYNYYKKFGYKTVVMGAS-FRNTGEILA--LAGCDLMTIGPKL 159 (321)
Q Consensus 106 f----~~----~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS-~r~~~~v~~--LaG~d~vTipp~~ 159 (321)
. .| .+.|-+..+..+.++.+..+ ..|++.+ +++..+|.. .+|+|.|-+.-.+
T Consensus 226 Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~--vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ 288 (404)
T PRK06843 226 GSICTTRIVAGVGVPQITAICDVYEVCKNTN--ICIIADGGIRFSGDVVKAIAAGADSVMIGNLF 288 (404)
T ss_pred CcCCcceeecCCCCChHHHHHHHHHHHhhcC--CeEEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 1 12 11244556666666666543 4566654 999999987 4799999776553
No 170
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=57.34 E-value=1e+02 Score=31.28 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=50.5
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC--------------HHHHHHHHHHHHhhC-ceee
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST--------------WEGIQAAKVLESEYG-IHCN 82 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT--------------~eGi~A~~~L~~~~G-I~vn 82 (321)
-.+++|.+|..- |. + ..+.+.+.|++ |+-|-|-+. .+-+++++.+.+. | +++|
T Consensus 150 ~eitiE~~p~~~-t~-e-------~l~~l~~aGvn--RiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~-g~~~v~ 217 (449)
T PRK09058 150 CEITLEGRINGF-DD-E-------KADAALDAGAN--RFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVAR-DRAAVV 217 (449)
T ss_pred CEEEEEeCcCcC-CH-H-------HHHHHHHcCCC--EEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC-CCCcEE
Confidence 479999999633 22 1 23334445665 666655543 2456788888876 8 8999
Q ss_pred eeeccCH-HH--------HHHHHHhcCceeecC
Q psy10958 83 LTLLFAF-AQ--------AVACAEAGVTLISPY 106 (321)
Q Consensus 83 ~TlvFS~-~Q--------a~aaa~Aga~~iSpf 106 (321)
+.+||++ .| ...+.+.+.+.|+.|
T Consensus 218 ~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y 250 (449)
T PRK09058 218 CDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLY 250 (449)
T ss_pred EEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999973 23 233455678888888
No 171
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=57.11 E-value=1.7e+02 Score=27.35 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=75.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC-CHHHHHHHHHHHHhhCceeeeeec--cCHHHHHHHHHhc----C
Q psy10958 28 LSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS-TWEGIQAAKVLESEYGIHCNLTLL--FAFAQAVACAEAG----V 100 (321)
Q Consensus 28 la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa-T~eGi~A~~~L~~~~GI~vn~Tlv--FS~~Qa~aaa~Ag----a 100 (321)
+..+++..++-++.|.+. ||+ .|=+=-|. .+.-.+.++.+.+. .=++.+..+ ....-...+.++| +
T Consensus 15 ~~~~~~~k~~i~~~L~~~----Gv~--~iEvg~~~~~~~~~~~~~~l~~~-~~~~~~~~l~r~~~~~v~~a~~~~~~~~~ 87 (268)
T cd07940 15 VSLTPEEKLEIARQLDEL----GVD--VIEAGFPAASPGDFEAVKRIARE-VLNAEICGLARAVKKDIDAAAEALKPAKV 87 (268)
T ss_pred CCCCHHHHHHHHHHHHHc----CCC--EEEEeCCCCCHHHHHHHHHHHHh-CCCCEEEEEccCCHhhHHHHHHhCCCCCC
Confidence 467888888888888775 665 66666687 45556777777653 222333322 3455556677777 7
Q ss_pred ceeecCCCC---------C---CCchHHHHHHHHHHHhcCCceEEe--ecccCCHhHHHH------HhCCCeEEeC
Q psy10958 101 TLISPYAPT---------E---DPGVVSVTKIYNYYKKFGYKTVVM--GASFRNTGEILA------LAGCDLMTIG 156 (321)
Q Consensus 101 ~~iSpf~~~---------~---d~Gi~~v~~i~~~~~~~~~~T~vl--~AS~r~~~~v~~------LaG~d~vTip 156 (321)
+.+..|... . +.-+..+..+.++.++.|+...+- -++-.+++++.. -+|+|.++++
T Consensus 88 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 163 (268)
T cd07940 88 DRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIP 163 (268)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 766666111 1 134677788888889998875532 222245666554 2588887663
No 172
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=56.93 E-value=2e+02 Score=28.03 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe-----cC----------CHHHHHHHHHHHHhhCcee
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL-----AS----------TWEGIQAAKVLESEYGIHC 81 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI-----Pa----------T~eGi~A~~~L~~~~GI~v 81 (321)
++++.+=.-|....+.|.+++-|+.+.++.++.|+ +++.|= |- -++|++-.++.++++|++|
T Consensus 14 ~~~~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~---~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpv 90 (290)
T PLN03033 14 AEPFFLLAGPNVIESEEHILRMAKHIKDISTKLGL---PLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPI 90 (290)
T ss_pred CCCeEEEecCChhcCHHHHHHHHHHHHHHHHhCCC---cEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCce
Confidence 35677778888889999999999999998777666 333332 32 2578999999999899999
Q ss_pred eeeeccCHHHHHHHHHhcCceeecC-------------C---------CCCCCchHHHHHHHHHHHhcCCc
Q psy10958 82 NLTLLFAFAQAVACAEAGVTLISPY-------------A---------PTEDPGVVSVTKIYNYYKKFGYK 130 (321)
Q Consensus 82 n~TlvFS~~Qa~aaa~Aga~~iSpf-------------~---------~~~d~Gi~~v~~i~~~~~~~~~~ 130 (321)
+|=|.+..|+..+++. ++++..= + +..-..+.....+.+++...|-+
T Consensus 91 -vTeV~~~~q~~~vae~-~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~ 159 (290)
T PLN03033 91 -VTDVHESSQCEAVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNP 159 (290)
T ss_pred -EEeeCCHHHHHHHHhh-CcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999996 4554322 1 11124456667777777777643
No 173
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=56.64 E-value=1.6e+02 Score=32.11 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=55.3
Q ss_pred CHHHHHHHHHhcCceeecCCCCCCCc-hHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEEeCHHHHHHHh
Q psy10958 88 AFAQAVACAEAGVTLISPYAPTEDPG-VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMTIGPKLLEELE 164 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~iSpf~~~~d~G-i~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vTipp~~l~~l~ 164 (321)
.+.||..|++-+-..++.+-...+|. +..++.+.+.-+++|.+.-|.|----++..+.-| .|.+.+.++|..+....
T Consensus 621 DL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a~dp~~~~~L~glGi~~lS~~~~~i~~~k 700 (748)
T PRK11061 621 DLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAGDPMGALLLIGLGYRHLSMNGRSVARVK 700 (748)
T ss_pred HHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCcccCHHHHHHHHHCCCcEEccChHHHHHHH
Confidence 56677777776655444443334565 5667778888888888888888666777777765 58889999998777765
Q ss_pred c
Q psy10958 165 N 165 (321)
Q Consensus 165 ~ 165 (321)
.
T Consensus 701 ~ 701 (748)
T PRK11061 701 Y 701 (748)
T ss_pred H
Confidence 5
No 174
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=56.38 E-value=1.6e+02 Score=29.64 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEe--cCC-HHHHHHHHHHHHhhCceeeeee----ccCHHHHHHHHHhcCce
Q psy10958 30 FDKDASIAKAKKYIKMYEEAGIDKERILIKL--AST-WEGIQAAKVLESEYGIHCNLTL----LFAFAQAVACAEAGVTL 102 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI--PaT-~eGi~A~~~L~~~~GI~vn~Tl----vFS~~Qa~aaa~Aga~~ 102 (321)
.+.++.++.++.+.+. |++ +|++ |.. ..|.+++++|.+.++....+-- .-.......|.++|++.
T Consensus 13 ~~~~~~~~~~~~~~~~----Gv~----~ie~g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdg 84 (430)
T PRK07028 13 LELDRAVEIAKEAVAG----GAD----WIEAGTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADI 84 (430)
T ss_pred CCHHHHHHHHHHHHhc----CCc----EEEeCCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCE
Confidence 4777777777777664 442 3355 443 5689999999976332111100 11234888899999998
Q ss_pred eecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCC-HhHHHH--HhCCCeEEeCHH
Q psy10958 103 ISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRN-TGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 103 iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~-~~~v~~--LaG~d~vTipp~ 158 (321)
+...+-. + ...+.++.+..+++|.+..+-..|..+ ..++.. -.|+|++++.|.
T Consensus 85 V~v~g~~-~--~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg 140 (430)
T PRK07028 85 VCILGLA-D--DSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVHVG 140 (430)
T ss_pred EEEecCC-C--hHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEec
Confidence 8743221 1 123456677777777655431235544 344443 359999977653
No 175
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=56.13 E-value=1.6e+02 Score=29.40 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=52.7
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--------------HHHHHHHHHHHhhCceeee
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--------------EGIQAAKVLESEYGIHCNL 83 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--------------eGi~A~~~L~~~~GI~vn~ 83 (321)
..+++|++|..- +. ...+.+++.|++ ||-|-|=+.. +.++|++.+.+. +.++|+
T Consensus 98 ~eitiE~nP~~~-~~--------e~l~~l~~~Gvn--RiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~-~~~v~~ 165 (390)
T PRK06582 98 TEITLETNPTSF-ET--------EKFKAFKLAGIN--RVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTI-FPRVSF 165 (390)
T ss_pred CEEEEEeCCCcC-CH--------HHHHHHHHCCCC--EEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHh-CCcEEE
Confidence 479999999643 22 222334455764 6666554432 457888888776 899999
Q ss_pred eeccCHH-H--------HHHHHHhcCceeecC
Q psy10958 84 TLLFAFA-Q--------AVACAEAGVTLISPY 106 (321)
Q Consensus 84 TlvFS~~-Q--------a~aaa~Aga~~iSpf 106 (321)
.++|++. | ...+++.+..-||.|
T Consensus 166 DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y 197 (390)
T PRK06582 166 DLIYARSGQTLKDWQEELKQAMQLATSHISLY 197 (390)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999875 3 445566688888888
No 176
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=55.92 E-value=1.9e+02 Score=27.93 Aligned_cols=117 Identities=17% Similarity=0.151 Sum_probs=75.7
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
-++..+.+++.+...+.+-+|+.-+.+.++.++-+++|-. .++ .+|-=|.-+.-+...+.|.+..+|++.+.
T Consensus 175 d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~----~~i----~~iEqP~~~~~~~~~~~l~~~~~ipi~~d 246 (357)
T cd03316 175 DLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEE----YDL----FWFEEPVPPDDLEGLARLRQATSVPIAAG 246 (357)
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCc----cCC----CeEcCCCCccCHHHHHHHHHhCCCCEEec
Confidence 4566777777664444555566566776555555544433 232 24555655545666777776547887664
Q ss_pred -eccCHHHHHHHHHhc-CceeecCCCCCCCchHHHHHHHHHHHhcCCc
Q psy10958 85 -LLFAFAQAVACAEAG-VTLISPYAPTEDPGVVSVTKIYNYYKKFGYK 130 (321)
Q Consensus 85 -lvFS~~Qa~aaa~Ag-a~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~ 130 (321)
.++++.+...+.+.| ++++.|= ..-.=|+.-+.++.++-+.+|.+
T Consensus 247 E~~~~~~~~~~~i~~~~~d~v~~k-~~~~GGi~~~~~i~~~a~~~g~~ 293 (357)
T cd03316 247 ENLYTRWEFRDLLEAGAVDIIQPD-VTKVGGITEAKKIAALAEAHGVR 293 (357)
T ss_pred cccccHHHHHHHHHhCCCCEEecC-ccccCCHHHHHHHHHHHHHcCCe
Confidence 588999999999877 4566553 12224688889999999999876
No 177
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=55.87 E-value=1.7e+02 Score=29.59 Aligned_cols=119 Identities=14% Similarity=0.046 Sum_probs=86.0
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhh---Cceee
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEY---GIHCN 82 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~---GI~vn 82 (321)
++..+.+++.+...+.+-||+.-+++.+..++-+++|... ++ .+|-=|..++.+...++|.... ++++.
T Consensus 227 ~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~----~l----~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa 298 (415)
T cd03324 227 IRRCRLAREVIGPDNKLMIDANQRWDVPEAIEWVKQLAEF----KP----WWIEEPTSPDDILGHAAIRKALAPLPIGVA 298 (415)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhcc----CC----CEEECCCCCCcHHHHHHHHHhcccCCCcee
Confidence 4566777777755678888888888887766666666442 22 3777788888888888887653 48887
Q ss_pred ee-eccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 83 LT-LLFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 83 ~T-lvFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
+. .+||..+.....+.|+ +++.|- ..---|+...+++.++-+.+|.+.-.
T Consensus 299 ~gEs~~~~~~~~~ll~~~a~dil~~d-~~~~GGit~~~kia~lA~a~gi~~~p 350 (415)
T cd03324 299 TGEHCQNRVVFKQLLQAGAIDVVQID-SCRLGGVNENLAVLLMAAKFGVPVCP 350 (415)
T ss_pred cCCccCCHHHHHHHHHcCCCCEEEeC-ccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 76 5789999999888874 677664 11224689999999999999876543
No 178
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=55.79 E-value=1.9e+02 Score=27.45 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=92.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHH--------------HHHHHHcCCCCCceEEEecCCHH-HHHHH
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKY--------------IKMYEEAGIDKERILIKLASTWE-GIQAA 70 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L--------------~~~~~~~gi~~~nv~IKIPaT~e-Gi~A~ 70 (321)
.++++...+.----+|+=++|++..-.-+-+..+++. +++++..-.+-+=|++=+..-.. -++..
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l 150 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEEL 150 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHH
Confidence 3445555554334689999988776666667776652 33443332333455555544443 34666
Q ss_pred HHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCC---chHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH
Q psy10958 71 KVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDP---GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL 147 (321)
Q Consensus 71 ~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~---Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L 147 (321)
-.+....|..+ +.-|.+.+....|.++|+.+|..-+|.-+. -+....++...+... .+.|--.++++++++..+
T Consensus 151 ~~~a~~lGle~-lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~--~~~iseSGI~~~~d~~~l 227 (254)
T PF00218_consen 151 LELAHSLGLEA-LVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKD--VIVISESGIKTPEDARRL 227 (254)
T ss_dssp HHHHHHTT-EE-EEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT--SEEEEESS-SSHHHHHHH
T ss_pred HHHHHHcCCCe-EEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccc--eeEEeecCCCCHHHHHHH
Confidence 66666669998 567899999999999999999988664332 234444555444422 234444459999999986
Q ss_pred --hCCCeEEeCHHHHH
Q psy10958 148 --AGCDLMTIGPKLLE 161 (321)
Q Consensus 148 --aG~d~vTipp~~l~ 161 (321)
+|+|.+-|...+++
T Consensus 228 ~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 228 ARAGADAVLVGEALMR 243 (254)
T ss_dssp CTTT-SEEEESHHHHT
T ss_pred HHCCCCEEEECHHHhC
Confidence 69999999877653
No 179
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=55.57 E-value=1.4e+02 Score=26.10 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCceEE------EecCCHHHHHHHHHHHHhhCce--eeeeeccCHHHHHHHHHhc
Q psy10958 28 LSFDKDASIAKAKKYIKMYEEAGIDKERILI------KLASTWEGIQAAKVLESEYGIH--CNLTLLFAFAQAVACAEAG 99 (321)
Q Consensus 28 la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I------KIPaT~eGi~A~~~L~~~~GI~--vn~TlvFS~~Qa~aaa~Ag 99 (321)
++.|.+.+.++++.+.+. |++ ++-+ =+|.+..|++.++++.+...++ +.+..-=....+..|.++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~----g~d--~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~g 79 (210)
T TIGR01163 6 LSADFARLGEEVKAVEEA----GAD--WIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAG 79 (210)
T ss_pred hcCCHHHHHHHHHHHHHc----CCC--EEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcC
Q ss_pred CceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH-HhCCCeEEe
Q psy10958 100 VTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA-LAGCDLMTI 155 (321)
Q Consensus 100 a~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~-LaG~d~vTi 155 (321)
++.+.. ............+.++++|.+..+....-...+.+.+ ..++|.+.+
T Consensus 80 adgv~v----h~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~ 132 (210)
T TIGR01163 80 ADIITV----HPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLL 132 (210)
T ss_pred CCEEEE----ccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEE
No 180
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=55.56 E-value=1.8e+02 Score=28.26 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=81.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.+...+.+-||+.-+++.+. |.++.+.+++.+ =.+|-=|.-+.-+...+.|.+..++++-+-
T Consensus 163 ~~~i~avr~~~g~~~~l~vDaN~~~~~~~----A~~~~~~l~~~~----i~~iEeP~~~~d~~~~~~L~~~~~~pia~dE 234 (352)
T cd03325 163 VERVAALREAVGPDIDIGVDFHGRVSKPM----AKDLAKELEPYR----LLFIEEPVLPENVEALAEIAARTTIPIATGE 234 (352)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHH----HHHHHHhccccC----CcEEECCCCccCHHHHHHHHHhCCCCEEecc
Confidence 55666777777667888999888888755 555544432222 226676776666777777776557887665
Q ss_pred eccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceE
Q psy10958 85 LLFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTV 132 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~ 132 (321)
.+++..+.....+.|+ +++.|= ..-.=|+....++.++-+++|.+.-
T Consensus 235 s~~~~~~~~~~~~~~~~d~v~~d-~~~~GGit~~~~~~~lA~~~gi~~~ 282 (352)
T cd03325 235 RLFSRWDFKELLEDGAVDIIQPD-ISHAGGITELKKIAAMAEAYDVALA 282 (352)
T ss_pred cccCHHHHHHHHHhCCCCEEecC-ccccCCHHHHHHHHHHHHHcCCcEe
Confidence 4789999999988864 566553 1122368999999999999987753
No 181
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=54.88 E-value=2.2e+02 Score=27.93 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=72.9
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE-------------Eec--CCHHHHHHHHHHHHhhCceeeeeec---cC
Q psy10958 27 RLSFDKDASIAKAKKYIKMYEEAGIDKERILI-------------KLA--STWEGIQAAKVLESEYGIHCNLTLL---FA 88 (321)
Q Consensus 27 ~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I-------------KIP--aT~eGi~A~~~L~~~~GI~vn~Tlv---FS 88 (321)
.+..+++.+++-++.|.+. ||+ -|=| -.| ..|+-++++.+... +.++-+-++ ..
T Consensus 18 ~~~f~~~~~~~ia~~Ld~a----GV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~ 89 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEA----GVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK--RAKVAVLLLPGIGT 89 (333)
T ss_pred CCcCCHHHHHHHHHHHHHc----CCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC--CCEEEEEeccCccC
Confidence 4678888888888877765 665 2222 122 34444554443321 233322222 37
Q ss_pred HHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceE--EeecccCCHhHHHHH------hCCCeEEe
Q psy10958 89 FAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTV--VMGASFRNTGEILAL------AGCDLMTI 155 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~--vl~AS~r~~~~v~~L------aG~d~vTi 155 (321)
......|.++|++.+-.+....+ ...+.+..++.++.|+.+. +|-++..+++++.++ +|+|.+.|
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e--~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i 162 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTE--ADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI 162 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccch--HHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 88888999999998877732222 1356788889999999874 444555566666642 59998765
No 182
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=54.52 E-value=1.5e+02 Score=26.01 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--H---HHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCC
Q psy10958 33 DASIAKAKKYIKMYEEAGIDKERILIKLASTW--E---GIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA 107 (321)
Q Consensus 33 e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--e---Gi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~ 107 (321)
+...++.+.+.+. |+ +.+.+-++... + .++.++.+...+|+++.+. .+...+.++|++++..-.
T Consensus 21 ~~~~~~~~~~~~~----gv--~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~a~~~gad~vh~~~ 89 (212)
T PRK00043 21 RDLLEVVEAALEG----GV--TLVQLREKGLDTRERLELARALKELCRRYGVPLIVN-----DRVDLALAVGADGVHLGQ 89 (212)
T ss_pred ccHHHHHHHHHhc----CC--CEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe-----ChHHHHHHcCCCEEecCc
Confidence 4455555555543 55 36777666432 2 2333444432336665432 677888999998765421
Q ss_pred CCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeC
Q psy10958 108 PTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG 156 (321)
Q Consensus 108 ~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTip 156 (321)
. +.....++ .++ + ....++.|..+..++.+ ..|+|+|.+.
T Consensus 90 -~-~~~~~~~~----~~~--~-~~~~~g~~~~t~~e~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 90 -D-DLPVADAR----ALL--G-PDAIIGLSTHTLEEAAAALAAGADYVGVG 131 (212)
T ss_pred -c-cCCHHHHH----HHc--C-CCCEEEEeCCCHHHHHHHhHcCCCEEEEC
Confidence 1 11111111 111 1 22357788888888876 5799999764
No 183
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=54.49 E-value=1.1e+02 Score=29.01 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=51.2
Q ss_pred HHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHH
Q psy10958 67 IQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL 145 (321)
Q Consensus 67 i~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~ 145 (321)
.+|++.+.+.. +-.+ .--++|++|+..|+++|++||.. ++. ....++++.+..+....+..+.+..=-+.+.+.
T Consensus 171 ~~av~~~R~~~~~~~I-gVev~t~eea~~A~~~gaD~I~l-d~~---~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~ 245 (272)
T cd01573 171 LKALARLRATAPEKKI-VVEVDSLEEALAAAEAGADILQL-DKF---SPEELAELVPKLRSLAPPVLLAAAGGINIENAA 245 (272)
T ss_pred HHHHHHHHHhCCCCeE-EEEcCCHHHHHHHHHcCCCEEEE-CCC---CHHHHHHHHHHHhccCCCceEEEECCCCHHHHH
Confidence 34555555331 2233 55689999999999999998853 111 112345555555554334555555433667777
Q ss_pred H--HhCCCeEEeCH
Q psy10958 146 A--LAGCDLMTIGP 157 (321)
Q Consensus 146 ~--LaG~d~vTipp 157 (321)
+ -.|+|.+-++.
T Consensus 246 ~~~~~Gvd~I~vsa 259 (272)
T cd01573 246 AYAAAGADILVTSA 259 (272)
T ss_pred HHHHcCCcEEEECh
Confidence 6 37999884443
No 184
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=54.34 E-value=34 Score=31.27 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcCceeecC-CCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeE
Q psy10958 88 AFAQAVACAEAGVTLISPY-APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLM 153 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~iSpf-~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~v 153 (321)
++..+.+.+++||+.|+.= .....| ....++++.+++.+ .++=|-+.+.++... -+|+|.|
T Consensus 53 T~~ev~~l~~aGadIIAlDaT~R~Rp--~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D~I 116 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDATDRPRP--ETLEELIREIKEKY---QLVMADISTLEEAINAAELGFDII 116 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-SSSS-S--S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCC--cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCCEE
Confidence 6789999999999999877 333445 77888888888875 566677888888886 5899998
No 185
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=53.83 E-value=2e+02 Score=27.13 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=77.3
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH----------HHHHHHHHHhh--Cceeeeeec---cCHH
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG----------IQAAKVLESEY--GIHCNLTLL---FAFA 90 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG----------i~A~~~L~~~~--GI~vn~Tlv---FS~~ 90 (321)
|.+.++.+.+++-|+.|.+. ||+ -|=+=.|+..+. .+.++++.+.. +.++.+-+- ....
T Consensus 13 ~~~~f~~~~~~~ia~~L~~~----GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 86 (266)
T cd07944 13 NNWDFGDEFVKAIYRALAAA----GID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDID 86 (266)
T ss_pred cCccCCHHHHHHHHHHHHHC----CCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHH
Confidence 35788999888888888775 665 777777776432 45666665430 233322221 2345
Q ss_pred HHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEee--cccCCHhHHHHH------hCCCeEEe
Q psy10958 91 QAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILAL------AGCDLMTI 155 (321)
Q Consensus 91 Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~--AS~r~~~~v~~L------aG~d~vTi 155 (321)
-...+.+.|++.+..+... .-+..+.++.++.+++|+.+.+-. ++--+.+++.++ +|++.+.+
T Consensus 87 ~l~~a~~~gv~~iri~~~~--~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l 157 (266)
T cd07944 87 LLEPASGSVVDMIRVAFHK--HEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI 157 (266)
T ss_pred HHHHHhcCCcCEEEEeccc--ccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5667778888887777432 247788889999999998764332 333345555542 58888755
No 186
>PRK01362 putative translaldolase; Provisional
Probab=53.64 E-value=9.1 Score=35.31 Aligned_cols=21 Identities=43% Similarity=0.344 Sum_probs=17.8
Q ss_pred HHhHHHhhcCCCcceecccCC
Q psy10958 301 LFGTEILNIIPGRVSTEVDAR 321 (321)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ 321 (321)
.+..+|+++++|+||.|||++
T Consensus 41 ~~~~~i~~~i~g~vs~qv~~~ 61 (214)
T PRK01362 41 EVIKEICSIVDGPVSAEVIAL 61 (214)
T ss_pred HHHHHHHHhcCCCEEEEEeeC
Confidence 455789999999999999863
No 187
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=53.44 E-value=40 Score=31.47 Aligned_cols=128 Identities=11% Similarity=0.040 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHh---cCc---ee
Q psy10958 30 FDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEA---GVT---LI 103 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~A---ga~---~i 103 (321)
.|..-|+..-.+++..|.+.|.+ .|.|=+=+|..=.+.++.+++. |+++-+-+.+++..-+...+- .++ ++
T Consensus 71 ~DvHLMv~~P~~~i~~~~~aGad--~It~H~Ea~~~~~~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiM 147 (228)
T PRK08091 71 KDVHLMVRDQFEVAKACVAAGAD--IVTLQVEQTHDLALTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQIDLIQIL 147 (228)
T ss_pred EEEEeccCCHHHHHHHHHHhCCC--EEEEcccCcccHHHHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhhcCEEEEE
Confidence 46666777777777777777754 8888888777666788888875 874444444444333322222 233 33
Q ss_pred ecC-CCCC---C-CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHHHH
Q psy10958 104 SPY-APTE---D-PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 104 Spf-~~~~---d-~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~~l 160 (321)
|.- +-.+ . ..+.-++++.++.+++++++.+-+=.=-|.+.+.. -+|+|.+.+.-.++
T Consensus 148 tV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 148 TLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred EECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhh
Confidence 333 1111 1 34667788888888988887666655445555555 48999988876654
No 188
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=53.41 E-value=1.6e+02 Score=28.70 Aligned_cols=97 Identities=11% Similarity=0.026 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhccCC-CcEEEEecCC-------cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC-----HHHHHH
Q psy10958 3 KLVILFGTEILNIIP-GRVSTEVDAR-------LSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST-----WEGIQA 69 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~-G~Vs~EV~p~-------la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT-----~eGi~A 69 (321)
|++.++...|.+.++ .+|.+-+++. ...+.+++++ +.++.++.|++ -+-|--..+ ......
T Consensus 203 rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~----~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~ 276 (338)
T cd02933 203 RFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSY----LAKELNKRGLA--YLHLVEPRVAGNPEDQPPDF 276 (338)
T ss_pred hHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHH----HHHHHHHcCCc--EEEEecCCCCCcccccchHH
Confidence 567788888888764 3788888764 1234455554 44444444553 333322211 123444
Q ss_pred HHHHHHhhCceeeeeeccCHHHHHHHHHhc-Cceeec
Q psy10958 70 AKVLESEYGIHCNLTLLFAFAQAVACAEAG-VTLISP 105 (321)
Q Consensus 70 ~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Ag-a~~iSp 105 (321)
++++++..+|+|-++.=++.+++..+.+.| |+.|+.
T Consensus 277 ~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 277 LDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 555555448999999888899999999986 777764
No 189
>PLN02591 tryptophan synthase
Probab=53.39 E-value=2e+02 Score=27.10 Aligned_cols=123 Identities=21% Similarity=0.213 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee--eccCHHHHHHHHHhc---CceeecCCCCCC-Cc
Q psy10958 40 KKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT--LLFAFAQAVACAEAG---VTLISPYAPTED-PG 113 (321)
Q Consensus 40 ~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T--lvFS~~Qa~aaa~Ag---a~~iSpf~~~~d-~G 113 (321)
.++.+.+++.|++ -=++.-+|. .|.-+-.+.+.+ +||..-.= --.+.+.....++.. .++||-.+.-+. .+
T Consensus 96 ~~F~~~~~~aGv~-GviipDLP~-ee~~~~~~~~~~-~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~ 172 (250)
T PLN02591 96 DKFMATIKEAGVH-GLVVPDLPL-EETEALRAEAAK-NGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARAS 172 (250)
T ss_pred HHHHHHHHHcCCC-EEEeCCCCH-HHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcC
Confidence 3566667777886 345556775 444455555554 48876332 223333344444432 234555521111 11
Q ss_pred -hHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEEeCHHHHHHHhc
Q psy10958 114 -VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 114 -i~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vTipp~~l~~l~~ 165 (321)
-..+.+..+..|++.-...+.+..+++.+++.++ .|+|-+-+...+++.+.+
T Consensus 173 ~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~ 227 (250)
T PLN02591 173 VSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGE 227 (250)
T ss_pred CchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhh
Confidence 1335566666677643446678889999999995 679999999999887754
No 190
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=53.37 E-value=1.1e+02 Score=30.15 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=54.4
Q ss_pred HHHHHHHhccCC--CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--------------HHHHH
Q psy10958 6 ILFGTEILNIIP--GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--------------EGIQA 69 (321)
Q Consensus 6 v~~~~~i~~~~~--G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--------------eGi~A 69 (321)
.++...|.+.++ -.+++|++|..-.+ ...+.+++.|++ +|-|-|=+.. +-++|
T Consensus 76 ~~ll~~i~~~~~~~~eitiE~nP~~lt~---------e~l~~lk~~G~n--risiGvQS~~d~vL~~l~R~~~~~~~~~a 144 (353)
T PRK05904 76 DILLSTIKPYVDNNCEFTIECNPELITQ---------SQINLLKKNKVN--RISLGVQSMNNNILKQLNRTHTIQDSKEA 144 (353)
T ss_pred HHHHHHHHHhcCCCCeEEEEeccCcCCH---------HHHHHHHHcCCC--EEEEecccCCHHHHHHcCCCCCHHHHHHH
Confidence 444444444433 37999999975532 123333444654 5666554432 35788
Q ss_pred HHHHHHhhCce-eeeeeccCH-HH--------HHHHHHhcCceeecC
Q psy10958 70 AKVLESEYGIH-CNLTLLFAF-AQ--------AVACAEAGVTLISPY 106 (321)
Q Consensus 70 ~~~L~~~~GI~-vn~TlvFS~-~Q--------a~aaa~Aga~~iSpf 106 (321)
++.+.+. |+. +|+.++|++ .| ...+.+.+...++.|
T Consensus 145 i~~lr~~-G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y 190 (353)
T PRK05904 145 INLLHKN-GIYNISCDFLYCLPILKLKDLDEVFNFILKHKINHISFY 190 (353)
T ss_pred HHHHHHc-CCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 8899876 986 999999972 22 223344577888887
No 191
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=53.10 E-value=2e+02 Score=26.94 Aligned_cols=116 Identities=17% Similarity=0.140 Sum_probs=72.6
Q ss_pred HHHHHHHhccCC-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 6 ILFGTEILNIIP-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 6 v~~~~~i~~~~~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
+...+.|++..+ -+|++-.+--.+.+.+..++.++++.+. |++ .|||=...+=++.++.+.+. ||.+|+-
T Consensus 61 ~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~a----Ga~----gv~iED~~~~~~~i~ai~~a-~i~ViaR 131 (240)
T cd06556 61 PYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRA----GAA----GVKIEGGEWHIETLQMLTAA-AVPVIAH 131 (240)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHc----CCc----EEEEcCcHHHHHHHHHHHHc-CCeEEEE
Confidence 456677777776 4888888766666668888888888874 443 67776666666778888876 8888875
Q ss_pred eccC-----------------------HHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecc
Q psy10958 85 LLFA-----------------------FAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGAS 137 (321)
Q Consensus 85 lvFS-----------------------~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS 137 (321)
.=.. .+++.+..+|||+.+-+=. .....++++. +..+.++-.++++
T Consensus 132 td~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~----~~~e~~~~i~---~~~~~P~~~~gag 200 (240)
T cd06556 132 TGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMEC----VPVELAKQIT---EALAIPLAGIGAG 200 (240)
T ss_pred eCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcC----CCHHHHHHHH---HhCCCCEEEEecC
Confidence 3321 4556666777776543311 1233333333 3344555555555
No 192
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=53.04 E-value=2.5e+02 Score=28.06 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=72.4
Q ss_pred CcEEEE--ecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHH
Q psy10958 18 GRVSTE--VDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVAC 95 (321)
Q Consensus 18 G~Vs~E--V~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aa 95 (321)
-+|++| .+.. ..|.+++++|-++|.+. +.+=|=|-+|.. +--.|+++++++..+++-+-.=|...=++.+
T Consensus 20 aPI~VQSMTnT~-T~Dv~aTv~QI~~L~~a------G~dIVRvtv~~~-e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~ 91 (361)
T COG0821 20 APIVVQSMTNTD-TADVEATVAQIKALERA------GCDIVRVTVPDM-EAAEALKEIKQRLNVPLVADIHFDYRLALEA 91 (361)
T ss_pred CceEEEeccCCC-cccHHHHHHHHHHHHHc------CCCEEEEecCCH-HHHHHHHHHHHhCCCCEEEEeeccHHHHHHh
Confidence 489999 4443 45999999999999886 344566777754 4467778887766788888888998888888
Q ss_pred HHhcCceeecCCCCCCCch-HHHHHHHHHHHhcCCceE
Q psy10958 96 AEAGVTLISPYAPTEDPGV-VSVTKIYNYYKKFGYKTV 132 (321)
Q Consensus 96 a~Aga~~iSpf~~~~d~Gi-~~v~~i~~~~~~~~~~T~ 132 (321)
++.|++-+-.- .++-|. ..++.+.+.-+.+|.+.+
T Consensus 92 ~~~g~~k~RIN--PGNig~~~~v~~vVe~Ak~~g~piR 127 (361)
T COG0821 92 AECGVDKVRIN--PGNIGFKDRVREVVEAAKDKGIPIR 127 (361)
T ss_pred hhcCcceEEEC--CcccCcHHHHHHHHHHHHHcCCCEE
Confidence 88886533222 111111 257777777888877665
No 193
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=52.87 E-value=82 Score=30.84 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhccCCC--cEEEEecCCcC----CCHHHHHHHHHHHHHHHHHcC-CCCCceEEE-------------ecC
Q psy10958 3 KLVILFGTEILNIIPG--RVSTEVDARLS----FDKDASIAKAKKYIKMYEEAG-IDKERILIK-------------LAS 62 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~G--~Vs~EV~p~la----~d~e~~i~~A~~L~~~~~~~g-i~~~nv~IK-------------IPa 62 (321)
+++.++.+.|.+.+.- .|.+-+++.-. .+.+++ ..+.+++++.| ++ -+-|- +|.
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~----~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~ 265 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEA----LEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPS 265 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHH----HHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCC
Confidence 5677888888887643 35565654211 234444 45555555555 44 33331 111
Q ss_pred C--HHH--HHHHHHHHHhhCceeeeee-ccCHHHHHHHHHhc-Cceeec
Q psy10958 63 T--WEG--IQAAKVLESEYGIHCNLTL-LFAFAQAVACAEAG-VTLISP 105 (321)
Q Consensus 63 T--~eG--i~A~~~L~~~~GI~vn~Tl-vFS~~Qa~aaa~Ag-a~~iSp 105 (321)
+ ..| ...++.+++..+|+|-++. +++++++..+.+-| ++.|+.
T Consensus 266 ~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 266 MGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred CCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 1 122 3444455443478888886 78999999999875 666653
No 194
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=51.99 E-value=1.5e+02 Score=25.26 Aligned_cols=133 Identities=13% Similarity=0.187 Sum_probs=73.4
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE---------------ecCCHHHHHHHHHHHHhhCceee
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK---------------LASTWEGIQAAKVLESEYGIHCN 82 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK---------------IPaT~eGi~A~~~L~~~~GI~vn 82 (321)
|.-.++++- -..+....++.++++.+.+...|+ ++++. +|....-...++++... |..+-
T Consensus 25 g~~~i~lr~-~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~~~~a~~~g~~~vh~~~~~~~~~~~~~~~~~-~~~~g 99 (196)
T cd00564 25 GVTLVQLRE-KDLSARELLELARALRELCRKYGV---PLIINDRVDLALAVGADGVHLGQDDLPVAEARALLGP-DLIIG 99 (196)
T ss_pred CCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHhCC---eEEEeChHHHHHHcCCCEEecCcccCCHHHHHHHcCC-CCEEE
Confidence 433444432 234666777777777766554333 45552 12111112333444332 55554
Q ss_pred eeeccCHHHHHHHHHhcCceee--cC-CCC------CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCC
Q psy10958 83 LTLLFAFAQAVACAEAGVTLIS--PY-APT------EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCD 151 (321)
Q Consensus 83 ~TlvFS~~Qa~aaa~Aga~~iS--pf-~~~------~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d 151 (321)
++ +.|..++..+.+.|++|+. |+ ... ...|...++++.+. .+..+++++=-+.+.+.+ .+|+|
T Consensus 100 ~~-~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~pv~a~GGi~~~~i~~~~~~Ga~ 173 (196)
T cd00564 100 VS-THSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-----VEIPVVAIGGITPENAAEVLAAGAD 173 (196)
T ss_pred ee-CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----CCCCEEEECCCCHHHHHHHHHcCCC
Confidence 44 4688999999999999873 43 211 22345555555443 345566654335566665 37999
Q ss_pred eEEeCHHHHH
Q psy10958 152 LMTIGPKLLE 161 (321)
Q Consensus 152 ~vTipp~~l~ 161 (321)
.+.+...++.
T Consensus 174 ~i~~g~~i~~ 183 (196)
T cd00564 174 GVAVISAITG 183 (196)
T ss_pred EEEEehHhhc
Confidence 9988877653
No 195
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=51.99 E-value=2.2e+02 Score=27.63 Aligned_cols=117 Identities=13% Similarity=0.170 Sum_probs=67.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE-----EecC-----------------
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI-----KLAS----------------- 62 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I-----KIPa----------------- 62 (321)
+.++.+++.+..+-+|.+-..|.+. |..++ |+.+. +.|++. |.+ ..+.
T Consensus 153 ~~eil~~v~~~~~iPV~vKl~p~~~-~~~~~---a~~l~----~~G~dg--I~~~n~~~~~~~d~~~~~~~~~~glsg~~ 222 (334)
T PRK07565 153 YLDILRAVKSAVSIPVAVKLSPYFS-NLANM---AKRLD----AAGADG--LVLFNRFYQPDIDLETLEVVPGLVLSTPA 222 (334)
T ss_pred HHHHHHHHHhccCCcEEEEeCCCch-hHHHH---HHHHH----HcCCCe--EEEECCcCCCCcChhhcccccCCCCCCch
Confidence 4566777777777788888877432 33332 33222 233331 111 0000
Q ss_pred -CHHHHHHHHHHHHhhCceeeee-eccCHHHHHHHHHhcCceeecCCCCC--CCch--HHHHHHHHHHHhcCCce
Q psy10958 63 -TWEGIQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAGVTLISPYAPTE--DPGV--VSVTKIYNYYKKFGYKT 131 (321)
Q Consensus 63 -T~eGi~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~~~~--d~Gi--~~v~~i~~~~~~~~~~T 131 (321)
-+..++.++++.+..+|++-+. .|+|...+..+..+||+.+..+...- .+.+ ...+.+.+++.++|+++
T Consensus 223 ~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~g~~~ 297 (334)
T PRK07565 223 ELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMERHGYES 297 (334)
T ss_pred hhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHcCCCC
Confidence 1123566677765446777755 69999999999999999888883222 2321 34455666666666543
No 196
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=51.68 E-value=1.7e+02 Score=25.71 Aligned_cols=129 Identities=19% Similarity=0.261 Sum_probs=80.9
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH-----HHH-HHHHHHHHhhCceeeeeeccC-HH
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW-----EGI-QAAKVLESEYGIHCNLTLLFA-FA 90 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~-----eGi-~A~~~L~~~~GI~vn~TlvFS-~~ 90 (321)
.++++-++|..-.+.+ -...+..++...++++.++++-|+.+. ..+ ..++.|.+. |+++-+.-+-+ ..
T Consensus 85 ~~l~inl~~~~l~~~~----~~~~l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~l~~~-G~~ialddfg~~~~ 159 (241)
T smart00052 85 LRISINLSARQLISPD----LVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLREL-GVRIALDDFGTGYS 159 (241)
T ss_pred ceEEEEcCHHHHcCch----HHHHHHHHHHHcCCCHHHEEEEEeChhhhcChHHHHHHHHHHHHC-CCEEEEeCCCCcHH
Confidence 5799999887665532 223455555566788779999999842 233 788999976 99997765321 12
Q ss_pred HHHHHHHhcCceeecC-----CCCCCC-chHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeE
Q psy10958 91 QAVACAEAGVTLISPY-----APTEDP-GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLM 153 (321)
Q Consensus 91 Qa~aaa~Aga~~iSpf-----~~~~d~-Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~v 153 (321)
..........+||-.= ....++ .-..++.+..+.+.. ..++++..+.+..+... -.|+|.+
T Consensus 160 ~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~via~gVe~~~~~~~l~~~Gi~~~ 228 (241)
T smart00052 160 SLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKL--GLQVVAEGVETPEQLDLLRSLGCDYG 228 (241)
T ss_pred HHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHC--CCeEEEecCCCHHHHHHHHHcCCCEE
Confidence 2222333345555322 112222 345566676666655 46788899999887776 4788875
No 197
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=51.15 E-value=2e+02 Score=26.49 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=87.9
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH-----HHHHHHHHHHh-h
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDK-DASIAKAKKYIKMYEEAGIDKERILIKLASTWE-----GIQAAKVLESE-Y 77 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~-e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e-----Gi~A~~~L~~~-~ 77 (321)
.+.++++.++.-+-.|..=|+=.++.++ +.-+.+++.-++. |.+-=.+++-+.+-.. -.+.++++... .
T Consensus 45 ~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~----GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~ 120 (221)
T PRK00507 45 YVKLAAELLKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIAN----GADEIDMVINIGALKSGDWDAVEADIRAVVEAAG 120 (221)
T ss_pred HHHHHHHHhCCCCCeEEEEecccCCCChHHHHHHHHHHHHHc----CCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 4667777776544455555554455444 4445666666664 2322224443332222 23333333321 2
Q ss_pred Cceeee---eeccCHHHHH----HHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHHH--
Q psy10958 78 GIHCNL---TLLFAFAQAV----ACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILAL-- 147 (321)
Q Consensus 78 GI~vn~---TlvFS~~Qa~----aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~L-- 147 (321)
|+.+=+ |...+-+|-. .|.++|++||---.... +|-+....+..+.+..+.+..|.++ .+|+.++..++
T Consensus 121 ~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~-~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~ 199 (221)
T PRK00507 121 GAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFS-TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIE 199 (221)
T ss_pred CceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCC-CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHH
Confidence 666666 7777877744 35667999776552222 2224455555555555677888888 49999999984
Q ss_pred hCCCeE--EeCHHHHHHH
Q psy10958 148 AGCDLM--TIGPKLLEEL 163 (321)
Q Consensus 148 aG~d~v--Tipp~~l~~l 163 (321)
+|++.+ .-+.++++++
T Consensus 200 aGA~riGtS~~~~i~~~~ 217 (221)
T PRK00507 200 AGATRLGTSAGVAILKGL 217 (221)
T ss_pred cCcceEccCcHHHHHhcc
Confidence 799998 3344555543
No 198
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=51.03 E-value=2.5e+02 Score=27.49 Aligned_cols=120 Identities=10% Similarity=0.054 Sum_probs=84.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
-++..+.+++.+...+.+-||+.-+.+.+..++-+++|-.. + -.+|-=|..+..+...++|.+..+|++.+.
T Consensus 175 di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~----~----l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~ 246 (368)
T cd03329 175 DLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEEL----G----FFWYEDPLREASISSYRWLAEKLDIPILGT 246 (368)
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhc----C----CCeEeCCCCchhHHHHHHHHhcCCCCEEcc
Confidence 35666777776655677778888888876666666655442 2 236666887777888889987658888665
Q ss_pred -eccC-HHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 85 -LLFA-FAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 85 -lvFS-~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
.+++ +.+.....++|+ +++.|- ..-.-|+....++.++-+.+|.+.-+
T Consensus 247 E~~~~~~~~~~~~i~~~a~d~v~~d-~~~~GGit~~~~ia~~a~~~gi~~~~ 297 (368)
T cd03329 247 EHSRGALESRADWVLAGATDFLRAD-VNLVGGITGAMKTAHLAEAFGLDVEL 297 (368)
T ss_pred CcccCcHHHHHHHHHhCCCCEEecC-ccccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4678 888888888874 566663 12224788899999999999877644
No 199
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=50.96 E-value=1.9e+02 Score=27.02 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE--ecCCH-HHHHHHHHHHHhh-Cc
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK--LASTW-EGIQAAKVLESEY-GI 79 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK--IPaT~-eGi~A~~~L~~~~-GI 79 (321)
++.++.+.+.+ .+-+||+-+.|.+ +.+.+++-|+.+.+ .|++ -+.|. .|..+ .-+.+++++.... +|
T Consensus 122 ~l~~iv~av~~-~~~PVsvKiR~~~--~~~~~~~~a~~l~~----aGad--~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 122 LLKEFLTKMKE-LNKPIFVKIRGNC--IPLDELIDALNLVD----DGFD--GIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred HHHHHHHHHHc-CCCcEEEEeCCCC--CcchHHHHHHHHHH----cCCC--EEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 34566666663 3568999997653 44456666666554 4665 44443 33321 3367777777543 36
Q ss_pred eeeee-eccCHHHHHHHHHhcCceeec
Q psy10958 80 HCNLT-LLFAFAQAVACAEAGVTLISP 105 (321)
Q Consensus 80 ~vn~T-lvFS~~Qa~aaa~Aga~~iSp 105 (321)
++-.. -|+|.+++..+.++||+.++.
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 66655 799999999999999986653
No 200
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=50.93 E-value=1.5e+02 Score=28.50 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=51.5
Q ss_pred ccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCH
Q psy10958 86 LFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 86 vFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp 157 (321)
+.|++|+..++++|++.|- .++-....++++.++.+..+.+..+-++.=-|.+.+.+ -.|+|.+.++.
T Consensus 195 v~tleea~ea~~~GaDiI~----lDn~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 195 ADTIEQALTVLQASPDILQ----LDKFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSA 264 (277)
T ss_pred CCCHHHHHHHHHcCcCEEE----ECCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 4599999999999998774 33455677788888877666677777777778888877 46899885543
No 201
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=50.70 E-value=2.5e+02 Score=27.45 Aligned_cols=122 Identities=9% Similarity=0.028 Sum_probs=85.6
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.+..-+.+-||+.-+.+.+..++-++.|... + =.+|-=|..+..+...++|....++++.+-
T Consensus 150 ~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~----~----l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE 221 (361)
T cd03322 150 PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPY----R----LFWMEDPTPAENQEAFRLIRQHTATPLAVGE 221 (361)
T ss_pred HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhc----C----CCEEECCCCcccHHHHHHHHhcCCCCEEecc
Confidence 4566777777755677788888888887655555555432 2 236777888777888888887656776554
Q ss_pred eccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeec
Q psy10958 85 LLFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA 136 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A 136 (321)
-++|+.+.....++|+ +++.|= ..-.-|+.-..++.++-+.+|.+.-+-+.
T Consensus 222 ~~~~~~~~~~~i~~~a~di~~~d-~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 222 VFNSIWDWQNLIQERLIDYIRTT-VSHAGGITPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred CCcCHHHHHHHHHhCCCCEEecC-ccccCCHHHHHHHHHHHHHcCCeeeccCC
Confidence 4789999999999875 455543 11224689999999999999877765433
No 202
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=50.68 E-value=1.1e+02 Score=30.21 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhccCC-CcEEEEecCCc-------CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--H--HHHHH
Q psy10958 3 KLVILFGTEILNIIP-GRVSTEVDARL-------SFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--E--GIQAA 70 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~-G~Vs~EV~p~l-------a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--e--Gi~A~ 70 (321)
|++.++...|++.++ .+|.+-++|.- +.+.+++ +..+..++++.|++ -+=|..|... . .....
T Consensus 210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~---~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~ 284 (362)
T PRK10605 210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEAD---ALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFR 284 (362)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHH---HHHHHHHHHHcCCC--EEEeccccccCCccccHHHH
Confidence 567788888888764 46787787731 2333331 45555555555664 4444443111 1 13344
Q ss_pred HHHHHhhCceeeeeeccCHHHHHHHHHhc-Cceeec
Q psy10958 71 KVLESEYGIHCNLTLLFAFAQAVACAEAG-VTLISP 105 (321)
Q Consensus 71 ~~L~~~~GI~vn~TlvFS~~Qa~aaa~Ag-a~~iSp 105 (321)
+++++..++++.++..|+++++..+.+.| |++|+.
T Consensus 285 ~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 285 EKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred HHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEE
Confidence 55655457889999999999999999988 777764
No 203
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=50.64 E-value=1.7e+02 Score=27.03 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH----HHHHHHHHHhhCc
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG----IQAAKVLESEYGI 79 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG----i~A~~~L~~~~GI 79 (321)
.+.++.+.+.+ .+-+||+-+.+. .| +.+++-|+.+. +.|++ .|-+=....| +..++++. - +|
T Consensus 127 ~l~eiv~avr~-~~~pVsvKir~g--~~-~~~~~la~~l~----~aG~d----~ihv~~~~~g~~ad~~~I~~i~-~-~i 192 (233)
T cd02911 127 RLSEFIKALKE-TGVPVSVKIRAG--VD-VDDEELARLIE----KAGAD----IIHVDAMDPGNHADLKKIRDIS-T-EL 192 (233)
T ss_pred HHHHHHHHHHh-cCCCEEEEEcCC--cC-cCHHHHHHHHH----HhCCC----EEEECcCCCCCCCcHHHHHHhc-C-CC
Confidence 45666677766 466888888654 33 44555444443 44665 1222222223 55666665 3 67
Q ss_pred eeeee-eccCHHHHHHHHHhcCceeec
Q psy10958 80 HCNLT-LLFAFAQAVACAEAGVTLISP 105 (321)
Q Consensus 80 ~vn~T-lvFS~~Qa~aaa~Aga~~iSp 105 (321)
++-.- -|+|.+|+..+.+.||+.++.
T Consensus 193 pVIgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 193 FIIGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred EEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 76553 789999999999989887764
No 204
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=50.50 E-value=79 Score=31.41 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=57.5
Q ss_pred HHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceE------EEecCC-----------------
Q psy10958 7 LFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERIL------IKLAST----------------- 63 (321)
Q Consensus 7 ~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~------IKIPaT----------------- 63 (321)
+-.+.|+.+.+.++.+=|-|.-.+|.+..++-|++|.++..+. .++++ +-=|-|
T Consensus 36 ~~i~~Il~g~d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~---~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf 112 (344)
T TIGR00034 36 QEIADIIAGKDDRLLVVIGPCSIHDPEAAIEYATRLKALREEL---KDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSF 112 (344)
T ss_pred HHHHHHhcCCCCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhh---hcceEEEEEeccccCCCccccccccCCCCcCCCC
Confidence 3456677777889999999999999999999999999986531 11221 222433
Q ss_pred --HHHHHHHHHHH---HhhCceeeeeeccCH
Q psy10958 64 --WEGIQAAKVLE---SEYGIHCNLTLLFAF 89 (321)
Q Consensus 64 --~eGi~A~~~L~---~~~GI~vn~TlvFS~ 89 (321)
.+||+.+++|. .+.|.++ +|-+..+
T Consensus 113 ~i~~GL~~~R~ll~~i~~~GlPv-atE~ld~ 142 (344)
T TIGR00034 113 RINHGLRIARKLLLDLVNLGLPI-AGEFLDM 142 (344)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCe-EEEecCc
Confidence 38999999995 4569999 6655554
No 205
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=50.48 E-value=2.5e+02 Score=27.27 Aligned_cols=126 Identities=10% Similarity=0.104 Sum_probs=73.0
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHH-------HHHHHHcCCCCCceEEEecC--------CHHHHH
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKY-------IKMYEEAGIDKERILIKLAS--------TWEGIQ 68 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L-------~~~~~~~gi~~~nv~IKIPa--------T~eGi~ 68 (321)
.+.++.+.+.+.++-+|.+-+.|.+. +..++.+.+++. +.......++.++.-. +|. -+-.++
T Consensus 150 ~~~eiv~~v~~~~~iPv~vKl~p~~~-~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~-~~~~glSG~~~~~~al~ 227 (325)
T cd04739 150 RYLDILRAVKSAVTIPVAVKLSPFFS-ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEV-VPNLLLSSPAEIRLPLR 227 (325)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCCcc-CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccce-ecCCCcCCccchhHHHH
Confidence 35667777777777789999988653 444444444321 0000000111111000 011 112356
Q ss_pred HHHHHHHhhCceeeee-eccCHHHHHHHHHhcCceeecCCCCC--CCc--hHHHHHHHHHHHhcCCce
Q psy10958 69 AAKVLESEYGIHCNLT-LLFAFAQAVACAEAGVTLISPYAPTE--DPG--VVSVTKIYNYYKKFGYKT 131 (321)
Q Consensus 69 A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~~~~--d~G--i~~v~~i~~~~~~~~~~T 131 (321)
.++++.+..+|++-+. .|+|...+..+..+||+.+..+...- .|+ -...+++-++++++|+++
T Consensus 228 ~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~~ 295 (325)
T cd04739 228 WIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYES 295 (325)
T ss_pred HHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCCC
Confidence 6777765446887755 69999999999999999998883322 233 234456677777776543
No 206
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=50.35 E-value=1.3e+02 Score=31.82 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHH----HHcCCCC-CceE-EEecCCHHHHHHHHHHHHhhCceeeeeeccCHH
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMY----EEAGIDK-ERIL-IKLASTWEGIQAAKVLESEYGIHCNLTLLFAFA 90 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~----~~~gi~~-~nv~-IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~ 90 (321)
.|.+.+=+ | .-.+.++ +.+++.+.+.. .+.|++- +++. .=.=-|++++..+.++. + |+..-.-.-..+.
T Consensus 383 ~G~~~Im~-P-mV~t~eE-~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~-~-~vDf~sIGtnDL~ 457 (575)
T PRK11177 383 FGKLRIMF-P-MIISVEE-VRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLA-K-EVDFFSIGTNDLT 457 (575)
T ss_pred CCCcEEEE-c-CCCCHHH-HHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHH-h-hCCEEEECcHHHH
Confidence 37777766 4 3345555 23344433321 1223332 2211 11124677888888887 4 6777777778889
Q ss_pred HHHHHHHhcCceeecCCCCCCCc-hHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEEeCHHHHHHHhc
Q psy10958 91 QAVACAEAGVTLISPYAPTEDPG-VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 91 Qa~aaa~Aga~~iSpf~~~~d~G-i~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vTipp~~l~~l~~ 165 (321)
|+..|++-|-.-++.+....+|. ...++.+.+.-+++|...-+.|----++..+.-| .|.+.+.++|..+-.+..
T Consensus 458 qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A~dp~~~~lLlglGi~~lSm~p~~i~~vk~ 535 (575)
T PRK11177 458 QYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISIPRIKK 535 (575)
T ss_pred HHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHCCCCeEEECHHHHHHHHH
Confidence 99988888865555443445565 5667788888888988887777666677766665 689999999987766554
No 207
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=50.27 E-value=1.8e+02 Score=27.99 Aligned_cols=85 Identities=13% Similarity=0.001 Sum_probs=58.0
Q ss_pred HHHHHHHHhhC-ceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH
Q psy10958 68 QAAKVLESEYG-IHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA 146 (321)
Q Consensus 68 ~A~~~L~~~~G-I~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~ 146 (321)
+|++.+++..+ .++ .--+-|++|+..++++|++.|-. ++-....++++..+.++.+.+..+-++.=-|.+.+.+
T Consensus 178 ~av~~~r~~~~~~kI-eVEv~tleqa~ea~~agaDiI~L----Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~ 252 (284)
T PRK06096 178 GAINQLRRHAPEKKI-VVEADTPKEAIAALRAQPDVLQL----DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKN 252 (284)
T ss_pred HHHHHHHHhCCCCCE-EEECCCHHHHHHHHHcCCCEEEE----CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHH
Confidence 45555554311 222 22345999999999999988753 5556677888888777555667777776778888877
Q ss_pred --HhCCCeEEeCH
Q psy10958 147 --LAGCDLMTIGP 157 (321)
Q Consensus 147 --LaG~d~vTipp 157 (321)
..|+|.+.++.
T Consensus 253 yA~tGvD~Is~ga 265 (284)
T PRK06096 253 YADCGIRLFITSA 265 (284)
T ss_pred HHhcCCCEEEECc
Confidence 46899885543
No 208
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=49.56 E-value=3.5e+02 Score=28.79 Aligned_cols=61 Identities=26% Similarity=0.196 Sum_probs=39.2
Q ss_pred HHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCH----------HHHHHHHHhcCceeecC
Q psy10958 45 MYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAF----------AQAVACAEAGVTLISPY 106 (321)
Q Consensus 45 ~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~----------~Qa~aaa~Aga~~iSpf 106 (321)
...+.|++.=|++.-+--...-.++++..++. |..+.+++.|+. .-+..+.++|++.|+.=
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~ 174 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKA-GAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIK 174 (592)
T ss_pred HHHHCCCCEEEEEEecChHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 34456777544554443344456777777765 999998888755 34555677798876543
No 209
>KOG2335|consensus
Probab=49.54 E-value=1.5e+02 Score=29.63 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE-----------EecCCHHHHHHHH
Q psy10958 3 KLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI-----------KLASTWEGIQAAK 71 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I-----------KIPaT~eGi~A~~ 71 (321)
.|+-++.+.+....+.+||+-+ |+..|-+.+++.|+.+-.. |++ -+.| +=|+.|+-|++++
T Consensus 127 eLv~e~V~~v~~~l~~pVs~KI--RI~~d~~kTvd~ak~~e~a----G~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~ 198 (358)
T KOG2335|consen 127 ELVGEMVSAVRANLNVPVSVKI--RIFVDLEKTVDYAKMLEDA----GVS--LLTVHGRTREQKGLKTGPADWEAIKAVR 198 (358)
T ss_pred HHHHHHHHHHHhhcCCCeEEEE--EecCcHHHHHHHHHHHHhC----CCc--EEEEecccHHhcCCCCCCcCHHHHHHHH
Confidence 3566777888888888888888 7899999999999976553 321 2222 4578888888887
Q ss_pred HHHHhhCceeeee-eccCHHHHHHHHH-hcCc
Q psy10958 72 VLESEYGIHCNLT-LLFAFAQAVACAE-AGVT 101 (321)
Q Consensus 72 ~L~~~~GI~vn~T-lvFS~~Qa~aaa~-Aga~ 101 (321)
+...+ |++.+- -|.|+.-+..|.+ -|++
T Consensus 199 ~~~~~--ipviaNGnI~~~~d~~~~~~~tG~d 228 (358)
T KOG2335|consen 199 ENVPD--IPVIANGNILSLEDVERCLKYTGAD 228 (358)
T ss_pred HhCcC--CcEEeeCCcCcHHHHHHHHHHhCCc
Confidence 77632 777665 5899999999999 5775
No 210
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=48.98 E-value=2.9e+02 Score=27.59 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=86.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.+..-+.+-+|+.-+.+.+..++-+++|-. .+ =.+|-=|..+..+...++|.+..+|++.+.
T Consensus 193 ~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~----~~----l~~iEeP~~~~d~~~~~~L~~~~~iPIa~dE 264 (404)
T PRK15072 193 PKLFEAVRNKFGFDLHLLHDVHHRLTPIEAARLGKSLEP----YR----LFWLEDPTPAENQEAFRLIRQHTTTPLAVGE 264 (404)
T ss_pred HHHHHHHHhhhCCCceEEEECCCCCCHHHHHHHHHhccc----cC----CcEEECCCCccCHHHHHHHHhcCCCCEEeCc
Confidence 567788888776678888888888887555544444433 22 246777877777888888876557887666
Q ss_pred eccCHHHHHHHHHhcC-ceeecCCCCCC-CchHHHHHHHHHHHhcCCceEEee
Q psy10958 85 LLFAFAQAVACAEAGV-TLISPYAPTED-PGVVSVTKIYNYYKKFGYKTVVMG 135 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga-~~iSpf~~~~d-~Gi~~v~~i~~~~~~~~~~T~vl~ 135 (321)
-+|+..+.....++|+ +++.|= ... =|+...+++..+-+.+|.+.-+-+
T Consensus 265 s~~~~~~~~~li~~~a~dii~~d--~~~~GGit~~~kia~lA~~~gi~~~~h~ 315 (404)
T PRK15072 265 VFNSIWDCKQLIEEQLIDYIRTT--VTHAGGITHLRRIADFAALYQVRTGSHG 315 (404)
T ss_pred CccCHHHHHHHHHcCCCCEEecC--ccccCcHHHHHHHHHHHHHcCCceeecc
Confidence 4789999999999875 666653 223 468999999999999987766543
No 211
>PRK12999 pyruvate carboxylase; Reviewed
Probab=48.78 E-value=1.3e+02 Score=34.54 Aligned_cols=80 Identities=25% Similarity=0.249 Sum_probs=53.8
Q ss_pred CcEEEE---ecCCc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHH-HHHHHHHHHHh----hCceeeeee
Q psy10958 18 GRVSTE---VDARL-SFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWE-GIQAAKVLESE----YGIHCNLTL 85 (321)
Q Consensus 18 G~Vs~E---V~p~l-a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~e-Gi~A~~~L~~~----~GI~vn~Tl 85 (321)
+.++.+ .||.- .+|.+-.++-|+.+.+. |+ ..|+||=. .||. --.-++.|++. .+++++-|+
T Consensus 672 ~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~----Ga--~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~ 745 (1146)
T PRK12999 672 AAICYTGDILDPARAKYDLDYYVDLAKELEKA----GA--HILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTS 745 (1146)
T ss_pred EEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc----CC--CEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 566666 24422 27888889999988875 54 47888733 2332 22333444433 267788888
Q ss_pred ccCHHHHHHHHHhcCcee
Q psy10958 86 LFAFAQAVACAEAGVTLI 103 (321)
Q Consensus 86 vFS~~Qa~aaa~Aga~~i 103 (321)
=.++.-+++|++|||+++
T Consensus 746 Gla~an~laA~~aGad~v 763 (1146)
T PRK12999 746 GNGLATYLAAAEAGVDIV 763 (1146)
T ss_pred chHHHHHHHHHHhCCCEE
Confidence 899999999999999876
No 212
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=48.31 E-value=2.6e+02 Score=27.07 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=81.0
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.+...+.+-+|+.-+++.+..++-+++|-. +++ .+|-=|..+..+...+.|.+..++++.+-
T Consensus 158 ~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~----~~~----~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE 229 (341)
T cd03327 158 VELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEK----YEL----RWIEEPLIPDDIEGYAELKKATGIPISTGE 229 (341)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhh----cCC----ccccCCCCccCHHHHHHHHhcCCCCeEecc
Confidence 456667777665567778888778888665555555543 222 35666776667777778876557887554
Q ss_pred eccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCce
Q psy10958 85 LLFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKT 131 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T 131 (321)
.+|+..+.....++++ +++.|= ..-.=|+.-.+++..+-+.+|.+.
T Consensus 230 ~~~~~~~~~~~i~~~a~d~i~~d-~~~~GGit~~~~i~~~A~~~g~~~ 276 (341)
T cd03327 230 HEYTVYGFKRLLEGRAVDILQPD-VNWVGGITELKKIAALAEAYGVPV 276 (341)
T ss_pred CccCHHHHHHHHHcCCCCEEecC-ccccCCHHHHHHHHHHHHHcCCee
Confidence 5789999999888764 566663 222347999999999999998763
No 213
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=48.16 E-value=1.8e+02 Score=27.46 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=48.3
Q ss_pred eeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCH
Q psy10958 83 LTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 83 ~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp 157 (321)
.--+-|++|+..|.++|++||-. +.-....++++.++.+.. .+..+.+..=-|.+.+.+ .+|+|.+.++.
T Consensus 185 ~vev~t~eea~~A~~~gaD~I~l----d~~~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~Gad~Isvga 256 (269)
T cd01568 185 EVEVETLEEAEEALEAGADIIML----DNMSPEELKEAVKLLKGL-PRVLLEASGGITLENIRAYAETGVDVISTGA 256 (269)
T ss_pred EEecCCHHHHHHHHHcCCCEEEE----CCCCHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHcCCCEEEEcH
Confidence 34457999999999999998854 223336667777776654 445555555567777776 47999986643
No 214
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.94 E-value=1.3e+02 Score=28.91 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=61.4
Q ss_pred CceEEE------ecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhc
Q psy10958 54 ERILIK------LASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKF 127 (321)
Q Consensus 54 ~nv~IK------IPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~ 127 (321)
+-+||| ......+++++++.. . +..+-+ -+-|.+|+..|+++|++||-. +..+...++++.+..+
T Consensus 161 d~ilikdnHi~~~g~v~~av~~~r~~~-~-~~~I~V-Ev~tleea~eA~~~gaD~I~L----D~~~~e~l~~~v~~~~-- 231 (277)
T PRK05742 161 DAFLIKENHIAACGGIAQAVAAAHRIA-P-GKPVEV-EVESLDELRQALAAGADIVML----DELSLDDMREAVRLTA-- 231 (277)
T ss_pred ccEEecHHHHHHhCCHHHHHHHHHHhC-C-CCeEEE-EeCCHHHHHHHHHcCCCEEEE----CCCCHHHHHHHHHHhC--
Confidence 346776 333346677777753 2 445433 468999999999999999943 4567778888777653
Q ss_pred CCceEEeecccCCHhHHHH--HhCCCeEEeCH
Q psy10958 128 GYKTVVMGASFRNTGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 128 ~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp 157 (321)
.+..+.+..=-+.+.+.+ ..|+|.+.++.
T Consensus 232 -~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 232 -GRAKLEASGGINESTLRVIAETGVDYISIGA 262 (277)
T ss_pred -CCCcEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 234444443345666666 47999987665
No 215
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=47.90 E-value=85 Score=31.24 Aligned_cols=73 Identities=25% Similarity=0.256 Sum_probs=52.4
Q ss_pred HHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE------EecCC------------------
Q psy10958 8 FGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI------KLAST------------------ 63 (321)
Q Consensus 8 ~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I------KIPaT------------------ 63 (321)
-.+.|+.+.+.++.+=+-|.-.+|.+..++-|++|..+.++. .++++| -=|-|
T Consensus 41 ~I~~Il~g~d~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~---~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldgsf~ 117 (348)
T PRK12756 41 RIEKILNGEDPRLLVIIGPCSIHDTDAALDYATRLAALREQY---QDRLEIVMRTYFEKPRTVVGWKGLISDPDLDGSYR 117 (348)
T ss_pred HHHHHhcCCCCceEEEecCCcCCCHHHHHHHHHHHHHHHHHh---hccEEEEEEeccccCCCCcccccccCCCCCCCCcc
Confidence 345667777789999999999999999999999999986542 122221 11422
Q ss_pred -HHHHHHHHHHH---HhhCceeeee
Q psy10958 64 -WEGIQAAKVLE---SEYGIHCNLT 84 (321)
Q Consensus 64 -~eGi~A~~~L~---~~~GI~vn~T 84 (321)
.+||+.+++|- .+.|+++ +|
T Consensus 118 i~~GL~~~R~ll~~i~~~GlP~-at 141 (348)
T PRK12756 118 VNHGLELARKLLLQINELGLPT-AT 141 (348)
T ss_pred HHHHHHHHHHHHHHHHHcCCce-ee
Confidence 26889988886 4558887 44
No 216
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=47.73 E-value=3.3e+02 Score=27.94 Aligned_cols=60 Identities=25% Similarity=0.219 Sum_probs=38.1
Q ss_pred HHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCH----------HHHHHHHHhcCceeecC
Q psy10958 46 YEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAF----------AQAVACAEAGVTLISPY 106 (321)
Q Consensus 46 ~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~----------~Qa~aaa~Aga~~iSpf 106 (321)
..+.|++.=|+++.+--...-.++++...+. |..+.+++.|+. .-+..+.++|++.|+.=
T Consensus 105 A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~-G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~ 174 (448)
T PRK12331 105 SVENGIDIIRIFDALNDVRNLETAVKATKKA-GGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK 174 (448)
T ss_pred HHHCCCCEEEEEEecCcHHHHHHHHHHHHHc-CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 3455777555555543334445677777765 988877766654 45666777898876543
No 217
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=47.25 E-value=3.5e+02 Score=28.05 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=74.5
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH-HHHHHHHHHHhhCceeeeeecc--CHHHHHHHHHh----
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE-GIQAAKVLESEYGIHCNLTLLF--AFAQAVACAEA---- 98 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e-Gi~A~~~L~~~~GI~vn~TlvF--S~~Qa~aaa~A---- 98 (321)
|.+..++++.++-|+.|.++ ||+ .|=+=.|++.+ =.++++.+... +-+..++.+- ...-...+.++
T Consensus 16 ~g~~~s~e~K~~ia~~L~~~----GV~--~IEvG~p~~s~~d~e~v~~i~~~-~~~~~i~al~r~~~~did~a~~al~~~ 88 (494)
T TIGR00973 16 PGASLTVEEKLQIALALERL----GVD--IIEAGFPVSSPGDFEAVQRIART-VKNPRVCGLARCVEKDIDAAAEALKPA 88 (494)
T ss_pred CCCCcCHHHHHHHHHHHHHc----CCC--EEEEECCCCCHHHHHHHHHHHHh-CCCCEEEEEcCCCHHhHHHHHHhcccc
Confidence 44678899999988888886 664 77788898754 36777777643 3222232211 12333344444
Q ss_pred cCceeecCC---------CCC---CCchHHHHHHHHHHHhcCCceEEeec--ccCCHhHHHH------HhCCCeEEeC
Q psy10958 99 GVTLISPYA---------PTE---DPGVVSVTKIYNYYKKFGYKTVVMGA--SFRNTGEILA------LAGCDLMTIG 156 (321)
Q Consensus 99 ga~~iSpf~---------~~~---d~Gi~~v~~i~~~~~~~~~~T~vl~A--S~r~~~~v~~------LaG~d~vTip 156 (321)
+...|..|. ... +..+..+.++.++.+++|..+.+-.- +--+++++.+ -+|++.+.+|
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~ 166 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIP 166 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 445565551 111 23467778888999999876654432 3345666665 2588877654
No 218
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=47.18 E-value=1.7e+02 Score=29.46 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=47.9
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC--------------HHHHHHHHHHHHhhCce-eee
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST--------------WEGIQAAKVLESEYGIH-CNL 83 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT--------------~eGi~A~~~L~~~~GI~-vn~ 83 (321)
.+++|++|..- +++.+ +.+.+.|++ +|-|-|-+. .+-++|++.|.+. |+. +|+
T Consensus 129 eitiE~~P~~l--t~e~l-------~~l~~~G~~--rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~-g~~~i~~ 196 (430)
T PRK08208 129 PKSVETSPATT--TAEKL-------ALLAARGVN--RLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAA-GFPILNI 196 (430)
T ss_pred eEEEEeCcCcC--CHHHH-------HHHHHcCCC--EEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHc-CCCeEEE
Confidence 58999999654 22222 233334553 666655544 2457888889876 997 699
Q ss_pred eeccC-HHHH--------HHHHHhcCceeecC
Q psy10958 84 TLLFA-FAQA--------VACAEAGVTLISPY 106 (321)
Q Consensus 84 TlvFS-~~Qa--------~aaa~Aga~~iSpf 106 (321)
.++|+ +.|. ..+.+.|+..++.|
T Consensus 197 dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y 228 (430)
T PRK08208 197 DLIYGIPGQTHASWMESLDQALVYRPEELFLY 228 (430)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Confidence 99999 2332 22344577888877
No 219
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=47.15 E-value=24 Score=32.95 Aligned_cols=41 Identities=29% Similarity=0.488 Sum_probs=35.8
Q ss_pred ccCHHHHHHHHHhcC--ceeecC--CCCCCCchHHHHHHHHHHHh
Q psy10958 86 LFAFAQAVACAEAGV--TLISPY--APTEDPGVVSVTKIYNYYKK 126 (321)
Q Consensus 86 vFS~~Qa~aaa~Aga--~~iSpf--~~~~d~Gi~~v~~i~~~~~~ 126 (321)
+|.+.|...|-+.|. ++||=| +|...||+..++++.+.+=.
T Consensus 38 ~F~vSQ~elA~~l~vSpSVISDYE~GRRk~Pg~~~vkk~V~ALIe 82 (241)
T COG1709 38 IFNVSQTELARELGVSPSVISDYESGRRKSPGIAFVKKFVEALIE 82 (241)
T ss_pred HhCccHHHHHHHhCCCcceeehhhccCccCccHHHHHHHHHHHHh
Confidence 688999999999997 599999 78888999999998887643
No 220
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=47.14 E-value=2.3e+02 Score=26.87 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHHH-HHHHHHHHh-----hCceeeeeeccCHHHHHHHHHhcCc
Q psy10958 31 DKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEGI-QAAKVLESE-----YGIHCNLTLLFAFAQAVACAEAGVT 101 (321)
Q Consensus 31 d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eGi-~A~~~L~~~-----~GI~vn~TlvFS~~Qa~aaa~Aga~ 101 (321)
+.+..++-++.+.+. |++ +|.++=. +||.-+ .-++.|.+. .|+++.=|.=..+.-+++|.+||++
T Consensus 147 ~~~~~~~~~~~~~~~----Ga~--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~ 220 (274)
T cd07938 147 PPERVAEVAERLLDL----GCD--EISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVR 220 (274)
T ss_pred CHHHHHHHHHHHHHc----CCC--EEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 667777777777664 554 4444311 455443 222333322 2688888899999999999999998
Q ss_pred eee---------cC--CCCCCCchHHHHHHHHHHHhcCCce
Q psy10958 102 LIS---------PY--APTEDPGVVSVTKIYNYYKKFGYKT 131 (321)
Q Consensus 102 ~iS---------pf--~~~~d~Gi~~v~~i~~~~~~~~~~T 131 (321)
++. || +|-+++.. ..+..+++..|++|
T Consensus 221 ~id~t~~GlGgcpfa~eraGN~~~---E~lv~~L~~~g~~t 258 (274)
T cd07938 221 RFDSSVGGLGGCPFAPGATGNVAT---EDLVYMLEGMGIET 258 (274)
T ss_pred EEEEeccccCCCCCCCCccCCcCH---HHHHHHHHhcCCCC
Confidence 775 55 23444444 44444455556665
No 221
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=47.08 E-value=1.1e+02 Score=26.94 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=75.6
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC--H---HHHHHHHHHHHhhCceeeeeec---cC
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST--W---EGIQAAKVLESEYGIHCNLTLL---FA 88 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT--~---eGi~A~~~L~~~~GI~vn~Tlv---FS 88 (321)
+.++++-++|..-.+.+ -...|..+. ..+.+..++++.|+.+ . .....++.|.+. |+++-+.-+ ++
T Consensus 87 ~~~l~v~i~~~~l~~~~----f~~~l~~~l-~~~~~~~~l~lei~e~~~~~~~~~~~~l~~l~~~-G~~i~ld~~g~~~~ 160 (236)
T PF00563_consen 87 DLPLFVNISPESLLDPE----FLDWLSNLL-QYGLPPSRLVLEISENDLPNDAELLENLRRLRSL-GFRIALDDFGSGSS 160 (236)
T ss_dssp TSEEEEEE-HHHHGSCC----HHHHHHHHH-HTTGGGGGEEEEEEGHHHHHHHHHHHHHHHHHHC-T-EEEEEEETSTCG
T ss_pred CceEEEEeehhhhhccc----ccccccccc-cccccccceEEEEechHhhhhHHHHHHHHHHHhc-CceeEeeeccCCcc
Confidence 46788888665444443 223344444 5577788999999998 2 334788888875 999977755 22
Q ss_pred HHHHHHHHHhcCceeec---C-CCCCCC-chHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeE
Q psy10958 89 FAQAVACAEAGVTLISP---Y-APTEDP-GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLM 153 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~iSp---f-~~~~d~-Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~v 153 (321)
.-.. ......+||-. + ....++ ....++.+.++.+++ ..++++..+.+..+... -.|+|.+
T Consensus 161 ~~~~--l~~l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~via~gVe~~~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 161 SLEY--LASLPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSL--GIKVIAEGVESEEQLELLKELGVDYI 228 (236)
T ss_dssp CHHH--HHHHCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHT--T-EEEEECE-SHHHHHHHHHTTESEE
T ss_pred hhhh--hhhcccccceeecccccccchhhHHHHHHHHHHHhhcc--ccccceeecCCHHHHHHHHHcCCCEE
Confidence 2222 23333444321 1 222233 345566677777776 46788888888887776 4788875
No 222
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=46.94 E-value=99 Score=30.81 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhccCCC--cEEEEecCCcC-CCHHHHHHHHHHHHHHHHHcC-CCCCceEEEecCC------H---HHH--
Q psy10958 3 KLVILFGTEILNIIPG--RVSTEVDARLS-FDKDASIAKAKKYIKMYEEAG-IDKERILIKLAST------W---EGI-- 67 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~G--~Vs~EV~p~la-~d~e~~i~~A~~L~~~~~~~g-i~~~nv~IKIPaT------~---eGi-- 67 (321)
|+++++...+.+.++. +|.+-+||.-. .+.-..++++..+.+.+++.| ++ -+-+--+.. . .|.
T Consensus 200 Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d--~i~vs~~~~~~~~~~~~~~~~~~~ 277 (363)
T COG1902 200 RFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVD--YIHVSEGGYERGGTITVSGPGYQV 277 (363)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCcc--EEEeecccccCCCCccccccchhH
Confidence 5778888888887763 49999988432 111234566666666666666 33 111111111 1 221
Q ss_pred HHHHHHHHhhCceeeeee-ccCHHHHHHHHHhc-Cceee
Q psy10958 68 QAAKVLESEYGIHCNLTL-LFAFAQAVACAEAG-VTLIS 104 (321)
Q Consensus 68 ~A~~~L~~~~GI~vn~Tl-vFS~~Qa~aaa~Ag-a~~iS 104 (321)
.-++.+...-++++-++. +++..||..+.+.| +++|+
T Consensus 278 ~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa 316 (363)
T COG1902 278 EFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVA 316 (363)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEE
Confidence 223334443379998887 99999999999998 77665
No 223
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=46.94 E-value=2.7e+02 Score=27.83 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHhcCC--ceEEeec-ccCCHhHHHH--HhCCCeEEeCHHHHHHH
Q psy10958 112 PGVVSVTKIYNYYKKFGY--KTVVMGA-SFRNTGEILA--LAGCDLMTIGPKLLEEL 163 (321)
Q Consensus 112 ~Gi~~v~~i~~~~~~~~~--~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~l~~l 163 (321)
|-+..+..+++++++.+. +..|+++ .+|+..++.. ..|+|.|-+.-..+..+
T Consensus 265 pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al 321 (392)
T cd02808 265 PTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIAL 321 (392)
T ss_pred cHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhc
Confidence 445666778888877654 4566665 4999999998 47999998888877665
No 224
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=46.87 E-value=1.1e+02 Score=29.56 Aligned_cols=121 Identities=11% Similarity=0.048 Sum_probs=74.6
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCC---C-----ceEEEe--------c-------
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDK---E-----RILIKL--------A------- 61 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~---~-----nv~IKI--------P------- 61 (321)
+.++.+.+.+.++-+|.+-++|.+ |...+.+-|....+ .|++. = -+.|-+ |
T Consensus 145 ~~~i~~~v~~~~~~Pv~vKlsp~~--~~~~~a~~~~~~~~----~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGl 218 (310)
T PRK02506 145 TEQILEEVFTYFTKPLGVKLPPYF--DIVHFDQAAAIFNK----FPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGI 218 (310)
T ss_pred HHHHHHHHHHhcCCccEEecCCCC--CHHHHHHHHHHhCc----CceEEEEEeccCCCceEEecCCCCccccCCCCCCcC
Confidence 466777777777789999999975 55666554433322 12211 0 112211 1
Q ss_pred ----CCHHHHHHHHHHHHhh--Cceeeee-eccCHHHHHHHHHhcCceeecCCCC--CCCc--hHHHHHHHHHHHhcCCc
Q psy10958 62 ----STWEGIQAAKVLESEY--GIHCNLT-LLFAFAQAVACAEAGVTLISPYAPT--EDPG--VVSVTKIYNYYKKFGYK 130 (321)
Q Consensus 62 ----aT~eGi~A~~~L~~~~--GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~~~--~d~G--i~~v~~i~~~~~~~~~~ 130 (321)
..+-.++.++++.+.. .|++-.. .|+|.++|+....|||+.+..+... ..|. -...+.+.++++++||+
T Consensus 219 SG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 298 (310)
T PRK02506 219 GGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAEKGYQ 298 (310)
T ss_pred CchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHhCCC
Confidence 1223467777776543 3666554 8999999999999999988888322 2333 34455677777888654
Q ss_pred e
Q psy10958 131 T 131 (321)
Q Consensus 131 T 131 (321)
+
T Consensus 299 s 299 (310)
T PRK02506 299 S 299 (310)
T ss_pred C
Confidence 3
No 225
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.73 E-value=2.9e+02 Score=27.05 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=73.9
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE-------------EecC--CHHHHHHHHHHHHhhCceeeeeec---c
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILI-------------KLAS--TWEGIQAAKVLESEYGIHCNLTLL---F 87 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I-------------KIPa--T~eGi~A~~~L~~~~GI~vn~Tlv---F 87 (321)
+.+..+++.+++-++.|.+. ||+ .|=| --|+ .++=++++.... . +.++-+-++ .
T Consensus 18 ~~~~f~~~~~~~i~~~L~~a----Gv~--~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~-~-~~~~~~ll~pg~~ 89 (337)
T PRK08195 18 VRHQYTLEQVRAIARALDAA----GVP--VIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV-K-QAKIAALLLPGIG 89 (337)
T ss_pred CCCccCHHHHHHHHHHHHHc----CCC--EEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC-C-CCEEEEEeccCcc
Confidence 35778898888888888775 554 3333 2222 344444443332 1 344333232 3
Q ss_pred CHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceE--EeecccCCHhHHHHH------hCCCeEEe
Q psy10958 88 AFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTV--VMGASFRNTGEILAL------AGCDLMTI 155 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~--vl~AS~r~~~~v~~L------aG~d~vTi 155 (321)
+......|.+.|++.+-.+....+ ...+.+..++.++.|+.+. ++-++.-+++++.++ +|+|.+.+
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~e--~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCTE--ADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecch--HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 788889999999998776632222 2357888889999998764 444555566666652 58888755
No 226
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=46.42 E-value=2e+02 Score=25.15 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=82.1
Q ss_pred CCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH------HHHHHHHHHHhhCceeeeeeccCH
Q psy10958 16 IPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE------GIQAAKVLESEYGIHCNLTLLFAF 89 (321)
Q Consensus 16 ~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e------Gi~A~~~L~~~~GI~vn~TlvFS~ 89 (321)
..+.+++-++|..-.+.+- ...+...++..++++.+++|.|+.... =...++.|.+. |+++-+.=.-+-
T Consensus 82 ~~~~l~ini~~~~l~~~~~----~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~-G~~l~ld~~g~~ 156 (240)
T cd01948 82 PDLRLSVNLSARQLRDPDF----LDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRAL-GVRIALDDFGTG 156 (240)
T ss_pred CCeEEEEECCHHHhCCcHH----HHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHC-CCeEEEeCCCCc
Confidence 4467999998766554422 234555556668888899999997664 36688889876 999877544332
Q ss_pred HHHH-HHHHhcCceeecC----CCC-C-CCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeE
Q psy10958 90 AQAV-ACAEAGVTLISPY----APT-E-DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLM 153 (321)
Q Consensus 90 ~Qa~-aaa~Aga~~iSpf----~~~-~-d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~v 153 (321)
..-. .......+||-.= ... . ......++.+....+.+ ..++++..+.+..+... -.|+|.+
T Consensus 157 ~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~via~gVe~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 157 YSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSL--GLKVVAEGVETEEQLELLRELGCDYV 227 (240)
T ss_pred HhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHC--CCeEEEEecCCHHHHHHHHHcCCCee
Confidence 2222 2222234444211 111 1 13355566666666655 57899999999888776 4788875
No 227
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=45.96 E-value=2e+02 Score=25.74 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=75.1
Q ss_pred cEEEEecCCcCC-----CHHHHHHHHHHHHHHHHHcCCCCCceEE-----EecCCHHHHHHHHHHHHhhCceee-eeecc
Q psy10958 19 RVSTEVDARLSF-----DKDASIAKAKKYIKMYEEAGIDKERILI-----KLASTWEGIQAAKVLESEYGIHCN-LTLLF 87 (321)
Q Consensus 19 ~Vs~EV~p~la~-----d~e~~i~~A~~L~~~~~~~gi~~~nv~I-----KIPaT~eGi~A~~~L~~~~GI~vn-~TlvF 87 (321)
.|-.|++++-.. +...+++.|+.+.+. |.+ -+.| ......+=+++++... +|++- ...+.
T Consensus 12 ~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~----GA~--~l~v~~~~~~~~g~~~~~~~i~~~v---~iPi~~~~~i~ 82 (217)
T cd00331 12 GVIAEVKRASPSKGLIREDFDPVEIAKAYEKA----GAA--AISVLTEPKYFQGSLEDLRAVREAV---SLPVLRKDFII 82 (217)
T ss_pred eEEEEecCCCCCCCcCCCCCCHHHHHHHHHHc----CCC--EEEEEeCccccCCCHHHHHHHHHhc---CCCEEECCeec
Confidence 567777663221 334466666666553 443 2222 2224455567777764 46665 45667
Q ss_pred CHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEE
Q psy10958 88 AFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMT 154 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vT 154 (321)
+..|+..|.++|++.+......-. ...++++.+.++..|..+.+... +.+++.. -.|++++-
T Consensus 83 ~~~~v~~~~~~Gad~v~l~~~~~~--~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~~g~~~i~ 146 (217)
T cd00331 83 DPYQIYEARAAGADAVLLIVAALD--DEQLKELYELARELGMEVLVEVH---DEEELERALALGAKIIG 146 (217)
T ss_pred CHHHHHHHHHcCCCEEEEeeccCC--HHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHcCCCEEE
Confidence 778999999999998766532222 26778888888888888755554 5544443 36888873
No 228
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=45.45 E-value=2.1e+02 Score=25.06 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEE---------------EecCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHH
Q psy10958 30 FDKDASIAKAKKYIKMYEEAGIDKERILI---------------KLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVA 94 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~~gi~~~nv~I---------------KIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~a 94 (321)
.+....++.++++.+++...|+ ++++ =+|....-...++.+... |+.+-+ .+-|..++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~a~~~gad~vh~~~~~~~~~~~~~~~~~-~~~~g~-~~~t~~e~~~ 119 (212)
T PRK00043 45 LDTRERLELARALKELCRRYGV---PLIVNDRVDLALAVGADGVHLGQDDLPVADARALLGP-DAIIGL-STHTLEEAAA 119 (212)
T ss_pred CCHHHHHHHHHHHHHHHHHhCC---eEEEeChHHHHHHcCCCEEecCcccCCHHHHHHHcCC-CCEEEE-eCCCHHHHHH
Confidence 3567777788887777655443 2333 123322123344444433 555533 3458899999
Q ss_pred HHHhcCceee--cC-CCCCC------CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHHHH
Q psy10958 95 CAEAGVTLIS--PY-APTED------PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 95 aa~Aga~~iS--pf-~~~~d------~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~~l 160 (321)
+.+.|++|+. |+ ....+ .|+..++++.+.++ ++.|++.+=-+.+.+.+ .+|+|.+.+.-.++
T Consensus 120 a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 120 ALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG----DIPIVAIGGITPENAPEVLEAGADGVAVVSAIT 192 (212)
T ss_pred HhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhh
Confidence 9999999885 34 21111 24667777665542 25566665336777776 37999998877665
No 229
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=44.97 E-value=4.1e+02 Score=28.25 Aligned_cols=87 Identities=28% Similarity=0.195 Sum_probs=56.1
Q ss_pred CcEEEEec---------CCcCCCHHHHHHHHHHH-----------------------------HHHHHHcCCCCCceEEE
Q psy10958 18 GRVSTEVD---------ARLSFDKDASIAKAKKY-----------------------------IKMYEEAGIDKERILIK 59 (321)
Q Consensus 18 G~Vs~EV~---------p~la~d~e~~i~~A~~L-----------------------------~~~~~~~gi~~~nv~IK 59 (321)
|.=++|+- +.++.|..+.+++.++. ++...+.|++.=|++..
T Consensus 34 Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~ 113 (582)
T TIGR01108 34 GYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDA 113 (582)
T ss_pred CCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEe
Confidence 77777773 55677777777777651 23344557775555555
Q ss_pred ecCCHHHHHHHHHHHHhhCceeeeeeccCH----------HHHHHHHHhcCceeec
Q psy10958 60 LASTWEGIQAAKVLESEYGIHCNLTLLFAF----------AQAVACAEAGVTLISP 105 (321)
Q Consensus 60 IPaT~eGi~A~~~L~~~~GI~vn~TlvFS~----------~Qa~aaa~Aga~~iSp 105 (321)
+--+..-..+++..++. |..+.+++.|+. .-+..+.++||+.|+.
T Consensus 114 lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i 168 (582)
T TIGR01108 114 LNDPRNLQAAIQAAKKH-GAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI 168 (582)
T ss_pred cCcHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 44445566777777765 999998877553 3355566779876643
No 230
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=44.95 E-value=2e+02 Score=26.65 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=38.3
Q ss_pred HHH-HHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccC--CHhHHH----H--HhCCCeEEeCHHH
Q psy10958 89 FAQ-AVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFR--NTGEIL----A--LAGCDLMTIGPKL 159 (321)
Q Consensus 89 ~~Q-a~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r--~~~~v~----~--LaG~d~vTipp~~ 159 (321)
..+ +..|+++|++|+-.-. ..|+..++++.+. ...+.. .....+ +..+.. + -+|++-+.+...+
T Consensus 158 ~~~~~~~a~~~GADyikt~~---~~~~~~l~~~~~~---~~iPVv-a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i 230 (258)
T TIGR01949 158 VAHAARLGAELGADIVKTPY---TGDIDSFRDVVKG---CPAPVV-VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNI 230 (258)
T ss_pred HHHHHHHHHHHCCCEEeccC---CCCHHHHHHHHHh---CCCcEE-EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHh
Confidence 455 4788899999987531 1355555555432 233332 224465 433333 2 3799988888777
Q ss_pred HH
Q psy10958 160 LE 161 (321)
Q Consensus 160 l~ 161 (321)
++
T Consensus 231 ~~ 232 (258)
T TIGR01949 231 FQ 232 (258)
T ss_pred hc
Confidence 63
No 231
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=44.88 E-value=1.7e+02 Score=28.98 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=58.6
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC---------HHHHHHHHHHHHhhCceeeeeecc
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST---------WEGIQAAKVLESEYGIHCNLTLLF 87 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT---------~eGi~A~~~L~~~~GI~vn~TlvF 87 (321)
+|++.+=.-|...++.+.+++.|+++.+..... -+. -..| |-| .+|++..++...+.|+++ +|-+|
T Consensus 91 ~~~~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~--~r~-~~fK-pRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v-~tev~ 165 (335)
T PRK08673 91 GGKPVVIAGPCSVESEEQILEIARAVKEAGAQI--LRG-GAFK-PRTSPYSFQGLGEEGLKLLAEAREETGLPI-VTEVM 165 (335)
T ss_pred CCceEEEEecCccCCHHHHHHHHHHHHHhchhh--ccC-cEec-CCCCCcccccccHHHHHHHHHHHHHcCCcE-EEeeC
Confidence 356777777888899999999999998874321 111 1224 333 367888888666679999 89999
Q ss_pred CHHHHHHHHHhcCce
Q psy10958 88 AFAQAVACAEAGVTL 102 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~ 102 (321)
+..|+-.+++. +++
T Consensus 166 d~~~~~~l~~~-vd~ 179 (335)
T PRK08673 166 DPRDVELVAEY-VDI 179 (335)
T ss_pred CHHHHHHHHHh-CCe
Confidence 99999999876 654
No 232
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=43.96 E-value=3.1e+02 Score=26.62 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=78.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.++..+.+-+|+.-+.+.+..++-++.|-. .++ .+|-=|.-+.-+...++|....+|++-+-
T Consensus 175 ~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~----~~~----~~iEeP~~~~~~~~~~~l~~~~~~pia~dE 246 (365)
T cd03318 175 LAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEA----AGV----ELIEQPVPRENLDGLARLRSRNRVPIMADE 246 (365)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHh----cCc----ceeeCCCCcccHHHHHHHHhhcCCCEEcCc
Confidence 345566777676567888888888887665555555544 232 36665654444555556655447777554
Q ss_pred eccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceE
Q psy10958 85 LLFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTV 132 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~ 132 (321)
-++++.+.....+.|+ +++.| ...-.-|+...+++..+-+.+|.++-
T Consensus 247 ~~~~~~~~~~~i~~~~~d~~~~-d~~~~GGit~~~~~~~~a~~~gi~~~ 294 (365)
T cd03318 247 SVSGPADAFELARRGAADVFSL-KIAKSGGLRRAQKVAAIAEAAGIALY 294 (365)
T ss_pred ccCCHHHHHHHHHhCCCCeEEE-eecccCCHHHHHHHHHHHHHcCCcee
Confidence 4789999999998875 45433 12223579999999999999987754
No 233
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=43.95 E-value=71 Score=32.43 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=56.3
Q ss_pred HHHHHHHHhccC----CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--------------HH
Q psy10958 5 VILFGTEILNII----PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--------------EG 66 (321)
Q Consensus 5 ~v~~~~~i~~~~----~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--------------eG 66 (321)
+.++...|.+.. +..+++|++|..- + ++ ..+.+++.|++ +|-|-|-+.. .-
T Consensus 122 l~~ll~~i~~~~~~~~~~e~tie~~p~~l-t-~e-------~l~~L~~~G~~--rvsiGvQS~~~~vl~~l~R~~~~~~~ 190 (453)
T PRK13347 122 FERLMAALRDAFDFAPEAEIAVEIDPRTV-T-AE-------MLQALAALGFN--RASFGVQDFDPQVQKAINRIQPEEMV 190 (453)
T ss_pred HHHHHHHHHHhCCCCCCceEEEEeccccC-C-HH-------HHHHHHHcCCC--EEEECCCCCCHHHHHHhCCCCCHHHH
Confidence 455666666542 2479999999754 2 22 23333444554 6666665443 34
Q ss_pred HHHHHHHHHhhCce-eeeeeccC-HHHH--------HHHHHhcCceeecC
Q psy10958 67 IQAAKVLESEYGIH-CNLTLLFA-FAQA--------VACAEAGVTLISPY 106 (321)
Q Consensus 67 i~A~~~L~~~~GI~-vn~TlvFS-~~Qa--------~aaa~Aga~~iSpf 106 (321)
++|++.+.+. |+. +|+.++|+ +.|- ..+.+.|+.-++.|
T Consensus 191 ~~ai~~lr~~-G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y 239 (453)
T PRK13347 191 ARAVELLRAA-GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVF 239 (453)
T ss_pred HHHHHHHHhc-CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 7888888876 996 99999998 2232 23445577777777
No 234
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=43.88 E-value=2.1e+02 Score=28.40 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=56.6
Q ss_pred HHHHHHHHhccCC----CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC--------------HHH
Q psy10958 5 VILFGTEILNIIP----GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST--------------WEG 66 (321)
Q Consensus 5 ~v~~~~~i~~~~~----G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT--------------~eG 66 (321)
+.++...|.+..+ -.+++|.+|..-. . . ..+.+.+.|++ |+-|-|=+. .+-
T Consensus 92 L~~ll~~i~~~~~~~~~~eit~E~~p~~~~-~-------e-~L~~l~~~Gvn--risiGvQS~~~~~L~~l~R~~~~~~~ 160 (394)
T PRK08898 92 LDRLLSDVRALLPLDPDAEITLEANPGTFE-A-------E-KFAQFRASGVN--RLSIGIQSFNDAHLKALGRIHDGAEA 160 (394)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEECCCCCC-H-------H-HHHHHHHcCCC--eEEEecccCCHHHHHHhCCCCCHHHH
Confidence 3445555555442 3799999996442 1 1 23334556776 666665433 234
Q ss_pred HHHHHHHHHhhCceeeeeeccCH-HHH--------HHHHHhcCceeecC
Q psy10958 67 IQAAKVLESEYGIHCNLTLLFAF-AQA--------VACAEAGVTLISPY 106 (321)
Q Consensus 67 i~A~~~L~~~~GI~vn~TlvFS~-~Qa--------~aaa~Aga~~iSpf 106 (321)
.++++.+.+. +.++|+.+||++ .|. ..+.+.+...||.|
T Consensus 161 ~~~i~~~~~~-~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y 208 (394)
T PRK08898 161 RAAIEIAAKH-FDNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLY 208 (394)
T ss_pred HHHHHHHHHh-CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 6677777765 889999999986 232 33455577888877
No 235
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=43.71 E-value=4.1e+02 Score=28.45 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=51.2
Q ss_pred cEEEEec-CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH--HHHHHHH-HHHh-hCceeeeeeccCHHHHH
Q psy10958 19 RVSTEVD-ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE--GIQAAKV-LESE-YGIHCNLTLLFAFAQAV 93 (321)
Q Consensus 19 ~Vs~EV~-p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e--Gi~A~~~-L~~~-~GI~vn~TlvFS~~Qa~ 93 (321)
+|++|-- ..-..|++++++|.++|.+. +.+=|=|-+|.-.+ .++.|++ |.+. .-|++-+-.=|...=|+
T Consensus 30 PI~VQSMt~t~T~D~~atv~Qi~~L~~a------GceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~ 103 (606)
T PRK00694 30 SIKIQSMTTTATTDVDGTVRQICALQEW------GCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAM 103 (606)
T ss_pred ceEEEecCCCCcccHHHHHHHHHHHHHc------CCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHH
Confidence 8899831 12356999999999999986 34566677776554 3444432 2332 23455556789999999
Q ss_pred HHHHhcCc
Q psy10958 94 ACAEAGVT 101 (321)
Q Consensus 94 aaa~Aga~ 101 (321)
.|+++ ++
T Consensus 104 ~a~~~-vd 110 (606)
T PRK00694 104 HVADF-VD 110 (606)
T ss_pred HHHHh-cC
Confidence 99998 65
No 236
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.46 E-value=1.9e+02 Score=27.67 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=58.6
Q ss_pred CceEEEec------CCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhc
Q psy10958 54 ERILIKLA------STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKF 127 (321)
Q Consensus 54 ~nv~IKIP------aT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~ 127 (321)
+-||||=- .-.+-++.+++.... +..+ .--+.|.+|+..|.++|++||.. +.-|...++++.+..+
T Consensus 159 d~vlikdnHi~~~g~~~~~v~~aR~~~~~-~~~I-gvsv~tleea~~A~~~gaDyI~l----D~~~~e~l~~~~~~~~-- 230 (277)
T PRK08072 159 DGVMIKDNHIAFCGSITKAVTSVREKLGH-MVKI-EVETETEEQVREAVAAGADIIMF----DNRTPDEIREFVKLVP-- 230 (277)
T ss_pred ceEEEchhHHHhhCCHHHHHHHHHHhCCC-CCEE-EEEeCCHHHHHHHHHcCCCEEEE----CCCCHHHHHHHHHhcC--
Confidence 45888822 112334445554321 2223 23346999999999999999965 3466777777776543
Q ss_pred CCceEEeecccCCHhHHHH--HhCCCeEEeCHH
Q psy10958 128 GYKTVVMGASFRNTGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 128 ~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~ 158 (321)
.+..+.+..=-+.+.+.+ -.|+|.+.++.-
T Consensus 231 -~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l 262 (277)
T PRK08072 231 -SAIVTEASGGITLENLPAYGGTGVDYISLGFL 262 (277)
T ss_pred -CCceEEEECCCCHHHHHHHHHcCCCEEEEChh
Confidence 223333443346777766 379999877653
No 237
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=43.17 E-value=1.8e+02 Score=28.25 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=60.8
Q ss_pred CceEEE---ecCCHHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCC
Q psy10958 54 ERILIK---LASTWEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGY 129 (321)
Q Consensus 54 ~nv~IK---IPaT~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~ 129 (321)
+-|+|| |-+...=-+|++.+.+.. ..++ .--+=|++|+..|+++|+++|- .++.....++++..+.+.
T Consensus 180 d~iLikdNHi~~~G~i~~av~~~r~~~~~~kI-eVEv~sleea~ea~~~gaDiI~----LDn~s~e~~~~av~~~~~--- 251 (296)
T PRK09016 180 DAFLIKENHIIASGSIRQAVEKAFWLHPDVPV-EVEVENLDELDQALKAGADIIM----LDNFTTEQMREAVKRTNG--- 251 (296)
T ss_pred hhhccCHHHHHHhCcHHHHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHcCCCEEE----eCCCChHHHHHHHHhhcC---
Confidence 447777 333211124555555431 2333 4466799999999999998773 455556778887776542
Q ss_pred ceEEeecccCCHhHHHH--HhCCCeEEeCH
Q psy10958 130 KTVVMGASFRNTGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 130 ~T~vl~AS~r~~~~v~~--LaG~d~vTipp 157 (321)
++.+.++.=-|.+.+.+ ..|+|.+.++.
T Consensus 252 ~~~ieaSGGI~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 252 RALLEVSGNVTLETLREFAETGVDFISVGA 281 (296)
T ss_pred CeEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 56666666677777777 46899886553
No 238
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=42.89 E-value=2.4e+02 Score=27.37 Aligned_cols=104 Identities=12% Similarity=0.060 Sum_probs=56.5
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH---------------HHHH
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW---------------EGIQ 68 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~---------------eGi~ 68 (321)
++.++.+.+.+.++-+||+-+... .|.....+.+..+...+++.|++ -|.|- +-|. .-..
T Consensus 110 ~~~~iv~av~~~~~~PVsvKiR~g--~~~~~~~~~~~~~~~~l~~~G~~--~itvH-gRt~~~qg~sg~~~~~~~~~~~~ 184 (318)
T TIGR00742 110 LVADCVKAMQEAVNIPVTVKHRIG--IDPLDSYEFLCDFVEIVSGKGCQ--NFIVH-ARKAWLSGLSPKENREIPPLRYE 184 (318)
T ss_pred HHHHHHHHHHHHhCCCeEEEEecC--CCCcchHHHHHHHHHHHHHcCCC--EEEEe-CCchhhcCCCccccccCCchhHH
Confidence 456677777777777888888543 32223344455555555556665 22221 2221 0124
Q ss_pred HHHHHHHhh-Cceeeee-eccCHHHHHHHHHhcCceeecC-CCCCCCc
Q psy10958 69 AAKVLESEY-GIHCNLT-LLFAFAQAVACAEAGVTLISPY-APTEDPG 113 (321)
Q Consensus 69 A~~~L~~~~-GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf-~~~~d~G 113 (321)
.++++.... .|++-+. -|+|.+++..+.. ||+.+..= +.+.+|.
T Consensus 185 ~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~ 231 (318)
T TIGR00742 185 RVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPY 231 (318)
T ss_pred HHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCH
Confidence 455555432 4665443 6788888887774 77655444 3344454
No 239
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=42.67 E-value=2.1e+02 Score=29.05 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=55.3
Q ss_pred HHHHHHHHhccC---C-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--------------HH
Q psy10958 5 VILFGTEILNII---P-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--------------EG 66 (321)
Q Consensus 5 ~v~~~~~i~~~~---~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--------------eG 66 (321)
+.++...+.+.. + ..+++|++|..- +++ ..+.+.+.|++ +|.|-|-+.. .-
T Consensus 121 l~~ll~~l~~~~~~~~~~e~tie~np~~l--t~e-------~l~~l~~aG~~--risiGvqS~~~~~L~~l~r~~~~~~~ 189 (453)
T PRK09249 121 LRRLMALLREHFNFAPDAEISIEIDPREL--DLE-------MLDALRELGFN--RLSLGVQDFDPEVQKAVNRIQPFEFT 189 (453)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEecCCcC--CHH-------HHHHHHHcCCC--EEEECCCCCCHHHHHHhCCCCCHHHH
Confidence 455555555442 2 379999999644 222 22333344554 6655544332 34
Q ss_pred HHHHHHHHHhhCc-eeeeeeccC--------HHHH-HHHHHhcCceeecC
Q psy10958 67 IQAAKVLESEYGI-HCNLTLLFA--------FAQA-VACAEAGVTLISPY 106 (321)
Q Consensus 67 i~A~~~L~~~~GI-~vn~TlvFS--------~~Qa-~aaa~Aga~~iSpf 106 (321)
+++++.+.+. |+ ++|+.++|+ +.+- ..+.+.|+..++.|
T Consensus 190 ~~ai~~l~~~-G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y 238 (453)
T PRK09249 190 FALVEAAREL-GFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVF 238 (453)
T ss_pred HHHHHHHHHc-CCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 6888888876 99 899999998 2222 23445688888877
No 240
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=42.46 E-value=1.7e+02 Score=26.38 Aligned_cols=103 Identities=20% Similarity=0.201 Sum_probs=61.4
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH----HHHHHHHHH--hhCceeeeeeccC
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG----IQAAKVLES--EYGIHCNLTLLFA 88 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG----i~A~~~L~~--~~GI~vn~TlvFS 88 (321)
..|++-..-....+.+.+.+-++++.+. |+ +.|+|+=- .+|.. ++++++... ..|+++.-|+=+.
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~----g~--~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 122 YEVAFGCEDASRTDPEELLELAEALAEA----GA--DIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLA 195 (237)
T ss_dssp SEEEEEETTTGGSSHHHHHHHHHHHHHH----T---SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-H
T ss_pred CceEeCccccccccHHHHHHHHHHHHHc----CC--eEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccch
Confidence 3555555444557888888888888775 44 45666511 23433 444444322 1378888899999
Q ss_pred HHHHHHHHHhcCcee--ecCCCCCCCchHHHHHHHHHHHh
Q psy10958 89 FAQAVACAEAGVTLI--SPYAPTEDPGVVSVTKIYNYYKK 126 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~i--Spf~~~~d~Gi~~v~~i~~~~~~ 126 (321)
+..+++|.+|||++| |.++--+-.|-.....+..+++.
T Consensus 196 ~An~laA~~aGa~~id~t~~GlG~~~Gn~~le~lv~~L~~ 235 (237)
T PF00682_consen 196 VANALAALEAGADRIDGTLGGLGERAGNAPLEELVAALER 235 (237)
T ss_dssp HHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCEEEccCccCCCCCCCccHHHHHHHHhh
Confidence 999999999999987 44433334555555555555443
No 241
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=42.30 E-value=3.2e+02 Score=26.25 Aligned_cols=149 Identities=16% Similarity=0.096 Sum_probs=79.0
Q ss_pred HHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCce----EEE----e------c--CCHH---HH
Q psy10958 7 LFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERI----LIK----L------A--STWE---GI 67 (321)
Q Consensus 7 ~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv----~IK----I------P--aT~e---Gi 67 (321)
...+.|...++=+|++-.+-. .|...+.+..+++.+ .|+..=|+ .-| . + ...+ =|
T Consensus 68 ~~~~~I~~a~~~Pv~~D~d~G--g~~~~v~r~V~~l~~----aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI 141 (285)
T TIGR02320 68 DVVEFMFDVTTKPIILDGDTG--GNFEHFRRLVRKLER----RGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKI 141 (285)
T ss_pred HHHHHHHhhcCCCEEEecCCC--CCHHHHHHHHHHHHH----cCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHH
Confidence 446677777777888777655 577777666666665 36642222 112 1 1 1122 35
Q ss_pred HHHHHHHHhhCceeeee----e-ccC----HHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEee-cc
Q psy10958 68 QAAKVLESEYGIHCNLT----L-LFA----FAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG-AS 137 (321)
Q Consensus 68 ~A~~~L~~~~GI~vn~T----l-vFS----~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~-AS 137 (321)
+|++.-.....+.+|+- + ..+ ++.+.+.++|||+.+.+-... .-...++++++.++..-.++-++. ..
T Consensus 142 ~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~~~p~~pl~~~~~ 219 (285)
T TIGR02320 142 RAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRFRNHYPRTPLVIVPT 219 (285)
T ss_pred HHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHhhhhCCCCCEEEecC
Confidence 66655532225777776 2 333 556677888899988765211 112333333333332111222222 21
Q ss_pred -c--CCHhHHHHHhCCCeEEeCHHHHHHHh
Q psy10958 138 -F--RNTGEILALAGCDLMTIGPKLLEELE 164 (321)
Q Consensus 138 -~--r~~~~v~~LaG~d~vTipp~~l~~l~ 164 (321)
+ .+.+++ .-+|...++.|+.++....
T Consensus 220 ~~~~~~~~eL-~~lG~~~v~~~~~~~~aa~ 248 (285)
T TIGR02320 220 SYYTTPTDEF-RDAGISVVIYANHLLRAAY 248 (285)
T ss_pred CCCCCCHHHH-HHcCCCEEEEhHHHHHHHH
Confidence 1 122222 2469999999987765543
No 242
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=41.83 E-value=3.3e+02 Score=26.31 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=75.7
Q ss_pred HHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe---cCCH--HH-------HHHHHHHHHhhC
Q psy10958 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL---ASTW--EG-------IQAAKVLESEYG 78 (321)
Q Consensus 11 ~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI---PaT~--eG-------i~A~~~L~~~~G 78 (321)
...+..+.+|.+++ ...+.++..+-|+.+.+. |++ =+.|=+ |... .| .+.++.+.+.-.
T Consensus 95 ~~~~~~~~pvi~sI---~g~~~~e~~~~a~~~~~a----gad--~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~ 165 (334)
T PRK07565 95 RAKEAVDIPVIASL---NGSSAGGWVDYARQIEQA----GAD--ALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS 165 (334)
T ss_pred HHHHhcCCcEEEEe---ccCCHHHHHHHHHHHHHc----CCC--EEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC
Confidence 44444567999999 446788777777766543 332 222211 2211 01 234445543224
Q ss_pred ceeee--eeccC--HHHHHHHHHhcCceeecCCCCC-------------C---Cch----HHHHHHHHHHHhcCCceEEe
Q psy10958 79 IHCNL--TLLFA--FAQAVACAEAGVTLISPYAPTE-------------D---PGV----VSVTKIYNYYKKFGYKTVVM 134 (321)
Q Consensus 79 I~vn~--TlvFS--~~Qa~aaa~Aga~~iSpf~~~~-------------d---~Gi----~~v~~i~~~~~~~~~~T~vl 134 (321)
+++.+ +.-++ ..-+.++.++|++.+..+++.. . +|- .+.+.+++.++.. +.-|+
T Consensus 166 iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIi 243 (334)
T PRK07565 166 IPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLA 243 (334)
T ss_pred CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEE
Confidence 55543 34333 3445566788999887763210 0 121 1123344444433 33345
Q ss_pred e-cccCCHhHHHH--HhCCCeEEeCHHHHH
Q psy10958 135 G-ASFRNTGEILA--LAGCDLMTIGPKLLE 161 (321)
Q Consensus 135 ~-AS~r~~~~v~~--LaG~d~vTipp~~l~ 161 (321)
+ -.+++.+++.+ ++|++.|-+.-.++.
T Consensus 244 g~GGI~s~~Da~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 244 ATTGVHDAEDVIKMLLAGADVVMIASALLR 273 (334)
T ss_pred EECCCCCHHHHHHHHHcCCCceeeehHHhh
Confidence 4 35899998888 589999977755554
No 243
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=41.76 E-value=2.8e+02 Score=29.26 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=64.5
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCC--ceEEEecCCH-----HHH-HHHHHHHHh--------hCceeeeee
Q psy10958 22 TEVDARLSFDKDASIAKAKKYIKMYEEAGIDKE--RILIKLASTW-----EGI-QAAKVLESE--------YGIHCNLTL 85 (321)
Q Consensus 22 ~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~--nv~IKIPaT~-----eGi-~A~~~L~~~--------~GI~vn~Tl 85 (321)
++.++.-+.+++ .+.+.++.+.+.+.|.+.. -+.|-+|-|- .-+ ..++.|... .+++|.=+.
T Consensus 171 v~f~~Ed~~r~d--~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~ 248 (564)
T TIGR00970 171 FEYSPESFSDTE--LEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDR 248 (564)
T ss_pred EEEecccCCCCC--HHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCC
Confidence 455554333232 3444444444444465322 2567899664 332 233444321 267777777
Q ss_pred ccCHHHHHHHHHhcCcee--ecCCCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 86 LFAFAQAVACAEAGVTLI--SPYAPTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 86 vFS~~Qa~aaa~Aga~~i--Spf~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
=..+.-+++|.+|||+.+ +||+.-+..|-....++.-.+...|+.|.+
T Consensus 249 GlAvANslaAv~aGa~~v~gt~~G~GERaGNa~le~lv~~L~~~g~~t~i 298 (564)
T TIGR00970 249 GTAVAAAELGFLAGADRIEGCLFGNGERTGNVDLVTLALNLYTQGVSPNL 298 (564)
T ss_pred ChHHHHHHHHHHhCCCEEEeecCcCCccccCccHHHHHHHHHhcCCCCCc
Confidence 788999999999999876 677654556666666555555556766644
No 244
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=41.34 E-value=3e+02 Score=26.14 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=32.6
Q ss_pred HHHHHHHHHhh--Cceeeee-eccCHHHHHHHHHhcCceeecCC
Q psy10958 67 IQAAKVLESEY--GIHCNLT-LLFAFAQAVACAEAGVTLISPYA 107 (321)
Q Consensus 67 i~A~~~L~~~~--GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~ 107 (321)
++.+.++.+.. .|++-.. -|+|.+++..+..+||+.+..+.
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEce
Confidence 67777777653 4666554 79999999999999999888883
No 245
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=40.05 E-value=1.4e+02 Score=28.97 Aligned_cols=66 Identities=24% Similarity=0.223 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEEe
Q psy10958 88 AFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMTI 155 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vTi 155 (321)
...++.++.++|+++|..-..++++ ....++.+.+++.+.+..|++...-+.++...+ +|+|.|.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~--~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHS--VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCc--HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE
Confidence 3578888999999877654333333 234445555565544567777777888877764 89999865
No 246
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=39.86 E-value=3e+02 Score=26.18 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=55.0
Q ss_pred HHHHHHhccCCCcEEEEecC---CcCCCHHHHHHHHHHHHH-----------------HHHHcCCCCCceEEEec-----
Q psy10958 7 LFGTEILNIIPGRVSTEVDA---RLSFDKDASIAKAKKYIK-----------------MYEEAGIDKERILIKLA----- 61 (321)
Q Consensus 7 ~~~~~i~~~~~G~Vs~EV~p---~la~d~e~~i~~A~~L~~-----------------~~~~~gi~~~nv~IKIP----- 61 (321)
++++++.. .-+|-+||-| .|..|..++++.|+.|.+ ...+.| ..++ -|
T Consensus 83 ~lare~~~--~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G---~~~v--mPlg~pI 155 (248)
T cd04728 83 RLAREALG--TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAG---CAAV--MPLGSPI 155 (248)
T ss_pred HHHHHHhC--CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcC---CCEe--CCCCcCC
Confidence 34455442 3588999855 456788999999998832 122222 2222 23
Q ss_pred ------CCHHHHHHHHHHHHhhCceeeeee-ccCHHHHHHHHHhcCceeecC
Q psy10958 62 ------STWEGIQAAKVLESEYGIHCNLTL-LFAFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 62 ------aT~eGi~A~~~L~~~~GI~vn~Tl-vFS~~Qa~aaa~Aga~~iSpf 106 (321)
.+++-|+.+++- .+++|.+-. |-|.+|+..|.+.|++-+-.-
T Consensus 156 Gsg~Gi~~~~~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 156 GSGQGLLNPYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred CCCCCCCCHHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 144545544332 267777764 888999999999998754333
No 247
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=39.74 E-value=4e+02 Score=26.66 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=81.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeee--
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNL-- 83 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~-- 83 (321)
++..+.+++.+..-+.+-||+.-+.+.+..++-++.|... ++ .++-=|..+.-+...++|.+...+++-+
T Consensus 195 i~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~----~l----~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~ 266 (394)
T PRK15440 195 AAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPY----GL----KWIEECLPPDDYWGYRELKRNAPAGMMVTS 266 (394)
T ss_pred HHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhc----CC----cceeCCCCcccHHHHHHHHHhCCCCCceec
Confidence 4566777777755678888888888887666666655442 32 2566677666677777777543333433
Q ss_pred -eeccCHHHHHHHHHhc-CceeecCCCCCC-CchHHHHHHHHHHHhcCCceEE
Q psy10958 84 -TLLFAFAQAVACAEAG-VTLISPYAPTED-PGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 84 -TlvFS~~Qa~aaa~Ag-a~~iSpf~~~~d-~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
--+||..+.....+++ ++++.|= ..+ -|+.-.+++..+-+.+|.+...
T Consensus 267 gE~~~~~~~~~~li~~~a~Divq~d--~~~~GGit~~~kia~lA~a~gi~~~p 317 (394)
T PRK15440 267 GEHEATLQGFRTLLEMGCIDIIQPD--VGWCGGLTELVKIAALAKARGQLVVP 317 (394)
T ss_pred CCCccCHHHHHHHHHcCCCCEEeCC--ccccCCHHHHHHHHHHHHHcCCeecc
Confidence 3688999999888887 4677764 223 4789999999999999876533
No 248
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=39.53 E-value=3.7e+02 Score=26.21 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=49.1
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH--------------HHHHHHHHHHhhCce-eee
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE--------------GIQAAKVLESEYGIH-CNL 83 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e--------------Gi~A~~~L~~~~GI~-vn~ 83 (321)
.+++|++|..- +. + +.+.+.+.|++ +|-|-|.+... -++|++.+.+. |+. +|+
T Consensus 87 eitie~~p~~~-t~-e-------~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~-g~~~v~~ 154 (374)
T PRK05799 87 EFTVEGNPGTF-TE-E-------KLKILKSMGVN--RLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL-GFNNINV 154 (374)
T ss_pred EEEEEeCCCcC-CH-H-------HHHHHHHcCCC--EEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCcEEE
Confidence 79999999643 22 2 23333344654 67676665542 46788888876 996 999
Q ss_pred eeccCH-HH--------HHHHHHhcCceeecC
Q psy10958 84 TLLFAF-AQ--------AVACAEAGVTLISPY 106 (321)
Q Consensus 84 TlvFS~-~Q--------a~aaa~Aga~~iSpf 106 (321)
.++|++ .| ...+.+.|...+|.|
T Consensus 155 dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y 186 (374)
T PRK05799 155 DLMFGLPNQTLEDWKETLEKVVELNPEHISCY 186 (374)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 999985 33 233455577777777
No 249
>PRK06267 hypothetical protein; Provisional
Probab=39.41 E-value=1.8e+02 Score=28.57 Aligned_cols=89 Identities=9% Similarity=0.064 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhCceeeeeeccC----HHHHHH----HHHhcCceee--cC-----CCC---CCCchHHHHHHHHHHHh
Q psy10958 65 EGIQAAKVLESEYGIHCNLTLLFA----FAQAVA----CAEAGVTLIS--PY-----APT---EDPGVVSVTKIYNYYKK 126 (321)
Q Consensus 65 eGi~A~~~L~~~~GI~vn~TlvFS----~~Qa~a----aa~Aga~~iS--pf-----~~~---~d~Gi~~v~~i~~~~~~ 126 (321)
.-+++++.+.+. ||+++.+.+++ .++... ..+.+++.++ || ... ..+...-+-++..++|-
T Consensus 154 d~~~~l~~ak~a-Gi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl 232 (350)
T PRK06267 154 KIKEMLLKAKDL-GLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRL 232 (350)
T ss_pred HHHHHHHHHHHc-CCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 367888888876 99999998884 444444 3344665443 22 111 22445666677777777
Q ss_pred cCCceEEeecccCCHh---HHHHHhCCCeEE
Q psy10958 127 FGYKTVVMGASFRNTG---EILALAGCDLMT 154 (321)
Q Consensus 127 ~~~~T~vl~AS~r~~~---~v~~LaG~d~vT 154 (321)
.-.++.++++++++.. ....++|++.+|
T Consensus 233 ~lP~~~I~~~~~~~~l~~~~~~~~aGaN~i~ 263 (350)
T PRK06267 233 NFPKIKIITGTWVDKLTNIGPLIMSGSNVIT 263 (350)
T ss_pred HCCCCCcchhhHhHhcchhhHHhhcCcceee
Confidence 7677888777653221 234479999998
No 250
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=39.40 E-value=4.4e+02 Score=28.30 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=51.6
Q ss_pred cEEEEec-CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH--HHHHHHHHHHhhC--ceeeeeeccCHHHHH
Q psy10958 19 RVSTEVD-ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE--GIQAAKVLESEYG--IHCNLTLLFAFAQAV 93 (321)
Q Consensus 19 ~Vs~EV~-p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e--Gi~A~~~L~~~~G--I~vn~TlvFS~~Qa~ 93 (321)
+|++|-- ..-..|++++++|.++|.+. +.+=|=|-+|.-.+ .++.|++-....| |++-+-.=|...-|+
T Consensus 26 PI~vQSMt~t~T~D~~atv~Qi~~l~~a------GceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~ 99 (611)
T PRK02048 26 PIRIQSMTNTSTMDTEACVAQAKRIIDA------GGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVAD 99 (611)
T ss_pred ceEEEecCCCCcccHHHHHHHHHHHHHc------CCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHH
Confidence 8899831 12356999999999999986 34566677776554 3444433221124 455556789999999
Q ss_pred HHHHhcCc
Q psy10958 94 ACAEAGVT 101 (321)
Q Consensus 94 aaa~Aga~ 101 (321)
.|+++ ++
T Consensus 100 ~a~~~-v~ 106 (611)
T PRK02048 100 VAAQY-AE 106 (611)
T ss_pred HHHHh-hC
Confidence 99998 64
No 251
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=39.07 E-value=2.1e+02 Score=27.19 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHH
Q psy10958 66 GIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL 145 (321)
Q Consensus 66 Gi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~ 145 (321)
-++.+++.... +..+ .--+.|++|+..|.++|++||-. +.-+...++++.+..+.+ ..+.+..=-+.+.+.
T Consensus 167 av~~~r~~~~~-~~~I-gvev~t~eea~~A~~~gaDyI~l----d~~~~e~lk~~v~~~~~~---ipi~AsGGI~~~ni~ 237 (265)
T TIGR00078 167 AVKRARAAAPF-ALKI-EVEVESLEEAEEAAEAGADIIML----DNMKPEEIKEAVQLLKGR---VLLEASGGITLDNLE 237 (265)
T ss_pred HHHHHHHhCCC-CCeE-EEEeCCHHHHHHHHHcCCCEEEE----CCCCHHHHHHHHHHhcCC---CcEEEECCCCHHHHH
Confidence 35555555421 2333 33446999999999999998853 333446677776665432 233333334667776
Q ss_pred H--HhCCCeEEeCH
Q psy10958 146 A--LAGCDLMTIGP 157 (321)
Q Consensus 146 ~--LaG~d~vTipp 157 (321)
+ -.|+|.+.++.
T Consensus 238 ~~a~~Gvd~Isvga 251 (265)
T TIGR00078 238 EYAETGVDVISSGA 251 (265)
T ss_pred HHHHcCCCEEEeCH
Confidence 6 47999987654
No 252
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=39.01 E-value=1.5e+02 Score=34.93 Aligned_cols=128 Identities=14% Similarity=0.183 Sum_probs=73.9
Q ss_pred HHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccCH
Q psy10958 10 TEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAF 89 (321)
Q Consensus 10 ~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS~ 89 (321)
++++...+|. . -++|.=.+|..-+-+=++.+.++-+. -++-.|-||++++ .|+.- +.
T Consensus 957 A~~R~~~~G~-~-liSP~phhdiySieDL~qlI~~Lk~~--~~~~~I~VKl~a~-~~vg~---ia--------------- 1013 (1485)
T PRK11750 957 ARLRYSVPGV-T-LISPPPHHDIYSIEDLAQLIFDLKQV--NPKALVSVKLVSE-PGVGT---IA--------------- 1013 (1485)
T ss_pred HHHcCCCCCC-C-CCCCCCCccCCCHHHHHHHHHHHHHh--CCCCcEEEEEccC-CCccH---HH---------------
Confidence 3444444452 1 13343444543333333333333211 1245899999987 44422 11
Q ss_pred HHHHHHHHhcCceeecCC-----------CCCCCchH---HHHHHHHHHHhcCCce--EEeec-ccCCHhHHHH--HhCC
Q psy10958 90 AQAVACAEAGVTLISPYA-----------PTEDPGVV---SVTKIYNYYKKFGYKT--VVMGA-SFRNTGEILA--LAGC 150 (321)
Q Consensus 90 ~Qa~aaa~Aga~~iSpf~-----------~~~d~Gi~---~v~~i~~~~~~~~~~T--~vl~A-S~r~~~~v~~--LaG~ 150 (321)
.-+++||+++|..-+ ...+.|+. .+.++++.+..+|.+- ++.+. .+|+..+|.. +.|+
T Consensus 1014 ---~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGA 1090 (1485)
T PRK11750 1014 ---TGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGA 1090 (1485)
T ss_pred ---hChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCC
Confidence 114578888776652 23345544 6788999999998763 43333 3899888886 6899
Q ss_pred CeEEeCHHHHHHH
Q psy10958 151 DLMTIGPKLLEEL 163 (321)
Q Consensus 151 d~vTipp~~l~~l 163 (321)
|.+-+.-..|-++
T Consensus 1091 d~~~~gt~~lial 1103 (1485)
T PRK11750 1091 ESFGFGTGPMVAL 1103 (1485)
T ss_pred cccccchHHHHHc
Confidence 9987766666554
No 253
>KOG2666|consensus
Probab=38.81 E-value=1.2e+02 Score=30.25 Aligned_cols=78 Identities=24% Similarity=0.260 Sum_probs=57.4
Q ss_pred HHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhh-----Cceeeeee
Q psy10958 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEY-----GIHCNLTL 85 (321)
Q Consensus 11 ~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~-----GI~vn~Tl 85 (321)
.|+....--+.+|+ |++ .+.++++..+-.++ +++||+|-=-.|+||.+|++.|..-+ --++.-|-
T Consensus 139 ~il~~n~~~i~fqi---lsn--peflaegtaikdl~-----npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittn 208 (481)
T KOG2666|consen 139 KILNHNSKGIKFQI---LSN--PEFLAEGTAIKDLF-----NPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTN 208 (481)
T ss_pred HHHhcCCCCceeEe---ccC--hHHhcccchhhhhc-----CCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeecc
Confidence 44443444578888 442 45778888888885 58999999999999999999997532 22445567
Q ss_pred ccCHHHHHHHHHh
Q psy10958 86 LFAFAQAVACAEA 98 (321)
Q Consensus 86 vFS~~Qa~aaa~A 98 (321)
..|.+--.+||.|
T Consensus 209 twsselsklaana 221 (481)
T KOG2666|consen 209 TWSSELSKLAANA 221 (481)
T ss_pred ccHHHHHHHHHHH
Confidence 7888877777776
No 254
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=38.72 E-value=2.7e+02 Score=27.24 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=59.5
Q ss_pred HHHHHHHHHhccCC-----CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCC---CceE------EEecC-------
Q psy10958 4 LVILFGTEILNIIP-----GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDK---ERIL------IKLAS------- 62 (321)
Q Consensus 4 ~~v~~~~~i~~~~~-----G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~---~nv~------IKIPa------- 62 (321)
.+.++.+.+.+.+. -+|.+-++|.+ +.+++.+-|+.+.+ .|++. .|-. -+.+.
T Consensus 193 ~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~--~~~~~~~ia~~l~~----~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~ 266 (344)
T PRK05286 193 ALDELLAALKEAQAELHGYVPLLVKIAPDL--SDEELDDIADLALE----HGIDGVIATNTTLSRDGLKGLPNADEAGGL 266 (344)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEeCCCC--CHHHHHHHHHHHHH----hCCcEEEEeCCccccccccccccCCCCCCc
Confidence 34566666766654 58999998863 33445555555443 34431 1110 11110
Q ss_pred -----CHHHHHHHHHHHHhh--Cceee-eeeccCHHHHHHHHHhcCceeecC
Q psy10958 63 -----TWEGIQAAKVLESEY--GIHCN-LTLLFAFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 63 -----T~eGi~A~~~L~~~~--GI~vn-~TlvFS~~Qa~aaa~Aga~~iSpf 106 (321)
.+..++.++++.+.. +|++- +..|+|.+++.....+||+.+...
T Consensus 267 SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 267 SGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 012456777777653 46766 458999999999999999988877
No 255
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=38.65 E-value=1.7e+02 Score=27.89 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH----HHHHHHHHH--hhCceeeeeeccCHHHHHHHHHhcC
Q psy10958 30 FDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG----IQAAKVLES--EYGIHCNLTLLFAFAQAVACAEAGV 100 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG----i~A~~~L~~--~~GI~vn~TlvFS~~Qa~aaa~Aga 100 (321)
.|.+..++-++++.+. |++ +|.|+=. ++|.- ++++++-.. ..+++++-|.=.++.-+++|.++|+
T Consensus 152 ~~~~~~~~~~~~~~~~----G~d--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~ 225 (287)
T PRK05692 152 VPPEAVADVAERLFAL----GCY--EISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGI 225 (287)
T ss_pred CCHHHHHHHHHHHHHc----CCc--EEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCC
Confidence 4677777777777764 654 5555411 23332 334333211 1378888899999999999999999
Q ss_pred ceee---------cCCCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 101 TLIS---------PYAPTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 101 ~~iS---------pf~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
+++. ||.. +-.|-.....+..+++..|++|.+
T Consensus 226 ~~id~s~~GlGecpfa~-g~aGN~~~E~lv~~L~~~g~~t~i 266 (287)
T PRK05692 226 TVFDASVGGLGGCPYAP-GASGNVATEDVLYMLHGLGIETGI 266 (287)
T ss_pred CEEEEEccccCCCCCCC-CccccccHHHHHHHHHhcCCCCCc
Confidence 8773 4411 124555566666667777877754
No 256
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=38.58 E-value=1.3e+02 Score=28.22 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEecC----CH----HHHHHHHHHHHhhCceeeeee
Q psy10958 32 KDASIAKAKKYIKMYEEAGIDKERILIKLAS----TW----EGIQAAKVLESEYGIHCNLTL 85 (321)
Q Consensus 32 ~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa----T~----eGi~A~~~L~~~~GI~vn~Tl 85 (321)
.+++++.+++.++.+.+.||++++|++=--. |. +-|+.++.+... |.++.+-+
T Consensus 145 ~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~-~~pil~G~ 205 (257)
T cd00739 145 VDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQL-GLPVLVGA 205 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhC-CCcEEEEe
Confidence 6788999999999999999999999887442 21 228888888875 88875543
No 257
>PRK10060 RNase II stability modulator; Provisional
Probab=38.48 E-value=2.7e+02 Score=29.53 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=79.2
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH------HHHHHHHHHHHhhCceeeeee---ccCH
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW------EGIQAAKVLESEYGIHCNLTL---LFAF 89 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~------eGi~A~~~L~~~~GI~vn~Tl---vFS~ 89 (321)
+|++-++|+--.+. ..+ ..|.+.+++.++++.++++-|+-+. .-...++.|.+. |+++-+-= -||-
T Consensus 494 ~i~vNls~~~l~~~-~~~---~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~-G~~ialDdfGtg~ss 568 (663)
T PRK10060 494 RVAVNVSARQLADQ-TIF---TALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFSQL-GAQVHLDDFGTGYSS 568 (663)
T ss_pred EEEEEcCHHHhCCC-cHH---HHHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHHHC-CCEEEEECCCCchhh
Confidence 68888877544443 233 3344455566899999999999873 346778889876 99997642 2222
Q ss_pred HHHHHHHHhcCceee---cC--CCCCC-CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeE
Q psy10958 90 AQAVACAEAGVTLIS---PY--APTED-PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLM 153 (321)
Q Consensus 90 ~Qa~aaa~Aga~~iS---pf--~~~~d-~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~v 153 (321)
-.++.-. .++++= -| +...+ .....++.+..+.+..| .++++-.+-+.++...| .|||.+
T Consensus 569 l~~L~~l--~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg--~~viAeGVEt~~q~~~l~~~G~d~~ 636 (663)
T PRK10060 569 LSQLARF--PIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALN--LQVIAEGVETAKEDAFLTKNGVNER 636 (663)
T ss_pred HHHHHhC--CCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCC--CcEEEecCCCHHHHHHHHHcCCCEE
Confidence 2222222 233321 11 11222 45677788888888775 56788888888887774 799975
No 258
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=38.44 E-value=1.9e+02 Score=28.31 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhccCCC--cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE-------ecCC----HHH--H
Q psy10958 3 KLVILFGTEILNIIPG--RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK-------LAST----WEG--I 67 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~G--~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK-------IPaT----~eG--i 67 (321)
+++.++.+.|++.++. .|.+-+++.-..+.--..+++.++.+.+++.|++ -+-|- +|.. +.| +
T Consensus 188 r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d--~i~vs~g~~e~~~~~~~~~~~~~~~~ 265 (353)
T cd02930 188 RFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGAD--ILNTGIGWHEARVPTIATSVPRGAFA 265 (353)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCC--EEEeCCCcCCCCCccccccCCchhhH
Confidence 4667888888887743 4666565421110001345556666666666753 22221 1111 112 5
Q ss_pred HHHHHHHHhhCceeeee-eccCHHHHHHHHHhc-Cceee
Q psy10958 68 QAAKVLESEYGIHCNLT-LLFAFAQAVACAEAG-VTLIS 104 (321)
Q Consensus 68 ~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Ag-a~~iS 104 (321)
..++++++.-+|+|-+. -++++.++..+.+.| +++++
T Consensus 266 ~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 266 WATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred HHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence 55667766557888777 678999999999987 65543
No 259
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=38.39 E-value=3.8e+02 Score=26.22 Aligned_cols=76 Identities=26% Similarity=0.448 Sum_probs=48.4
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--------------HHHHHHHHHHHhhCce-eee
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--------------EGIQAAKVLESEYGIH-CNL 83 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--------------eGi~A~~~L~~~~GI~-vn~ 83 (321)
.+++|++|..- +. + ..+.+.+.|++ +|-|=|-+.. +-++|++.+.+. |+. +|+
T Consensus 96 e~t~e~~p~~i-~~-e-------~l~~l~~~G~~--rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~-g~~~v~~ 163 (375)
T PRK05628 96 EVTTEANPEST-SP-E-------FFAALRAAGFT--RVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAA-GFEHVNL 163 (375)
T ss_pred EEEEEeCCCCC-CH-H-------HHHHHHHcCCC--EEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCcEEE
Confidence 68999999643 22 2 22333344654 5555554333 356788899876 998 999
Q ss_pred eeccC-HHHH--------HHHHHhcCceeecC
Q psy10958 84 TLLFA-FAQA--------VACAEAGVTLISPY 106 (321)
Q Consensus 84 TlvFS-~~Qa--------~aaa~Aga~~iSpf 106 (321)
.++|. +.|. ..+.+.|...++.|
T Consensus 164 dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y 195 (375)
T PRK05628 164 DLIYGTPGESDDDWRASLDAALEAGVDHVSAY 195 (375)
T ss_pred EEeccCCCCCHHHHHHHHHHHHhcCCCEEEee
Confidence 99996 2232 33455678888877
No 260
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=38.19 E-value=3.5e+02 Score=25.51 Aligned_cols=97 Identities=25% Similarity=0.189 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHHH-HHHHHHHHh----hCceeeeeeccCHHHHHHHHHhcCc
Q psy10958 30 FDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEGI-QAAKVLESE----YGIHCNLTLLFAFAQAVACAEAGVT 101 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eGi-~A~~~L~~~----~GI~vn~TlvFS~~Qa~aaa~Aga~ 101 (321)
.|.+..++-++++.+. |+ ++|.|+=. .||+-+ .-++.+.+. .|+++.=|+=.++.-+++|+++||+
T Consensus 146 ~~~~~~~~~~~~~~~~----Ga--~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 146 HTLEYYVKLAKELEDM----GA--DSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred CCHHHHHHHHHHHHHc----CC--CEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 5777777777777664 44 35655522 233332 222333322 2677777888999999999999999
Q ss_pred eee--cCCCCCCCchHHHHHHHHHHHhcCCceE
Q psy10958 102 LIS--PYAPTEDPGVVSVTKIYNYYKKFGYKTV 132 (321)
Q Consensus 102 ~iS--pf~~~~d~Gi~~v~~i~~~~~~~~~~T~ 132 (321)
++. ..+.-+-.|-.....+..+++..|++|.
T Consensus 220 ~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~~~ 252 (275)
T cd07937 220 IVDTAISPLSGGTSQPSTESMVAALRGTGRDTG 252 (275)
T ss_pred EEEEecccccCCcCChhHHHHHHHHHccCCCCC
Confidence 874 3333334676677777777776676654
No 261
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=38.02 E-value=2.1e+02 Score=33.04 Aligned_cols=82 Identities=23% Similarity=0.189 Sum_probs=52.7
Q ss_pred CCCcEEEE---ecC-CcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH-HHHHHHHHHh----hCceeee
Q psy10958 16 IPGRVSTE---VDA-RLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG-IQAAKVLESE----YGIHCNL 83 (321)
Q Consensus 16 ~~G~Vs~E---V~p-~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG-i~A~~~L~~~----~GI~vn~ 83 (321)
+.|.++.. .|| +-.+|.+-.++-|+.+.+. |+ +.|+||=. .||.. -.-++.|++. .++++.-
T Consensus 668 ~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~----Ga--d~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hd 741 (1143)
T TIGR01235 668 VEAAICYTGDILDPARPKYDLKYYTNLAVELEKA----GA--HILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHD 741 (1143)
T ss_pred EEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc----CC--CEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34566665 233 2246778888888888775 55 48888733 23332 2233344332 2567777
Q ss_pred eeccCHHHHHHHHHhcCcee
Q psy10958 84 TLLFAFAQAVACAEAGVTLI 103 (321)
Q Consensus 84 TlvFS~~Qa~aaa~Aga~~i 103 (321)
|.=.++.-+++|++|||+++
T Consensus 742 t~Gla~an~laA~eaGad~v 761 (1143)
T TIGR01235 742 TSGIAVASMLAAVEAGVDVV 761 (1143)
T ss_pred CCCcHHHHHHHHHHhCCCEE
Confidence 88889999999999999865
No 262
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=37.97 E-value=4.5e+02 Score=29.03 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCc-hHHHHHHHHHHHhcCCceEEeecccCC-HhHHHHH--hCCCeEEeCHHHHHHHhc
Q psy10958 111 DPG-VVSVTKIYNYYKKFGYKTVVMGASFRN-TGEILAL--AGCDLMTIGPKLLEELEN 165 (321)
Q Consensus 111 d~G-i~~v~~i~~~~~~~~~~T~vl~AS~r~-~~~v~~L--aG~d~vTipp~~l~~l~~ 165 (321)
+|. ...++++.+.-+++|...-+.+=.-.+ +..+..+ .|.+.++++++.+-....
T Consensus 724 hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d~~~~~k~ 782 (795)
T PRK06464 724 NPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPDFAEWLVEEGIDSISLNPDAVVDTWL 782 (795)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcchhHHHHHH
Confidence 344 455677777778887766554422234 6656554 699999999877655443
No 263
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=37.96 E-value=2.6e+02 Score=26.20 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-eccCHHHHHHHHHhcCceeecCCCCCCCchHHHHH
Q psy10958 41 KYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTK 119 (321)
Q Consensus 41 ~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~ 119 (321)
.+...|++.|.+.=.++.---...-++.=++...+.-.+++..- .+....|...|.++||+.+..-...-.+ ..+.+
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~--~~l~~ 151 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDD--EQLKE 151 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCH--HHHHH
Q ss_pred HHHHHHhcCCceEEeecccCCHhHHHHHhCCCeEEeCH
Q psy10958 120 IYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGP 157 (321)
Q Consensus 120 i~~~~~~~~~~T~vl~AS~r~~~~v~~LaG~d~vTipp 157 (321)
++++.+..|..+-+=..+......+..+ |+|.+.+.+
T Consensus 152 li~~a~~lGl~~lvevh~~~E~~~A~~~-gadiIgin~ 188 (260)
T PRK00278 152 LLDYAHSLGLDVLVEVHDEEELERALKL-GAPLIGINN 188 (260)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHHHc-CCCEEEECC
No 264
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=37.86 E-value=4.3e+02 Score=27.20 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=56.1
Q ss_pred ceEEEecCCHHHH--------HHHHHHHHhhCceeeeeeccCHHHHHHHHHhcC-cee-ecCC--CCCC--CchHHHHHH
Q psy10958 55 RILIKLASTWEGI--------QAAKVLESEYGIHCNLTLLFAFAQAVACAEAGV-TLI-SPYA--PTED--PGVVSVTKI 120 (321)
Q Consensus 55 nv~IKIPaT~eGi--------~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga-~~i-Spf~--~~~d--~Gi~~v~~i 120 (321)
+|+-||+..+..- .-++.|.+. |+- |.+||.++.++|+ +.| .=+. .+.+ +....+-.+
T Consensus 137 ~ViakVsr~~vAs~f~~p~p~~~v~~L~~~-G~i-------t~eEA~~a~~~g~aD~Ivve~EAGGHtg~~~~~~Llp~i 208 (444)
T TIGR02814 137 RLIAKVSRPEVAEAFMSPAPAHILQKLLAE-GRI-------TREEAELARRVPVADDICVEADSGGHTDNRPLVVLLPAI 208 (444)
T ss_pred eEEEecCCHHHHHHhcCCCcHHHHHHHHHc-CCC-------CHHHHHHHHhCCCCcEEEEeccCCCCCCCCcHHHHHHHH
Confidence 6777764333221 234667776 876 9999999999995 432 2252 2212 334444444
Q ss_pred H---HHH-HhcCCc--eEEeec-ccCCHhHHHH--HhCCCeEEe
Q psy10958 121 Y---NYY-KKFGYK--TVVMGA-SFRNTGEILA--LAGCDLMTI 155 (321)
Q Consensus 121 ~---~~~-~~~~~~--T~vl~A-S~r~~~~v~~--LaG~d~vTi 155 (321)
. +.. ++++|. ..|++| .+-+...+.+ ..|+|.|-+
T Consensus 209 ~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 209 IRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVT 252 (444)
T ss_pred HHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEe
Confidence 3 222 334554 458877 5889999887 479998743
No 265
>PRK13561 putative diguanylate cyclase; Provisional
Probab=37.85 E-value=4.9e+02 Score=27.16 Aligned_cols=129 Identities=9% Similarity=0.114 Sum_probs=80.6
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH------HHHHHHHHHHHhhCceeeee---ecc
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW------EGIQAAKVLESEYGIHCNLT---LLF 87 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~------eGi~A~~~L~~~~GI~vn~T---lvF 87 (321)
+.++++-++|.--.|. ..+ ..|.+..++.+++++++++-||.+. .-...++.|.+. |+++-+- .=|
T Consensus 485 ~~~~~iNlS~~~l~~~-~f~---~~l~~~l~~~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~l~~~-G~~i~lddfG~g~ 559 (651)
T PRK13561 485 MLPLSVNLSALQLMHP-NMV---ADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNA-GVRVALDDFGMGY 559 (651)
T ss_pred CceEEEECCHHHHCCc-hHH---HHHHHHHHHcCCChHHEEEEEchhhhhcCHHHHHHHHHHHHHC-CCEEEEECCCCCc
Confidence 3478888887655554 333 3556666667899999999999764 345667888875 9998663 122
Q ss_pred CHHHHHHH-HHhcCceeecC----CCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeE
Q psy10958 88 AFAQAVAC-AEAGVTLISPY----APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLM 153 (321)
Q Consensus 88 S~~Qa~aa-a~Aga~~iSpf----~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~v 153 (321)
|--.++.- .....+|+-.= .... ..-..++.+..+.+..| .++++-.+-+.++... -.|||.+
T Consensus 560 ssl~~L~~l~~l~~d~lKiD~s~i~~i~-~~~~~v~~i~~~a~~l~--i~viAegVE~~~~~~~l~~~g~d~~ 629 (651)
T PRK13561 560 AGLRQLQHMKSLPIDVLKIDKMFVDGLP-EDDSMVAAIIMLAQSLN--LQVIAEGVETEAQRDWLLKAGVGIA 629 (651)
T ss_pred ccHHHHhhcCCCCCcEEEECHHHHhcCC-CCHHHHHHHHHHHHHCC--CcEEEecCCCHHHHHHHHhcCCCEE
Confidence 22222222 22344444221 1111 12356777777776665 5678888888887776 4899975
No 266
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=37.65 E-value=25 Score=32.39 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=17.4
Q ss_pred HHhHHHhhcCCCcceecccC
Q psy10958 301 LFGTEILNIIPGRVSTEVDA 320 (321)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~ 320 (321)
.+-.+|++++||+||.||.+
T Consensus 41 ~~~~~i~~~~~g~vs~qv~~ 60 (213)
T TIGR00875 41 EVLKEIQEAVEGPVSAETIS 60 (213)
T ss_pred HHHHHHHHhcCCcEEEEEee
Confidence 36689999999999999975
No 267
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=37.54 E-value=3.4e+02 Score=25.14 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=80.9
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.++..+.+-+|+.-+.|.+..++-++.|.. .++ .+|-=|..++.+...++|. - ++++-+-
T Consensus 114 ~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~----~~i----~~iEqP~~~~d~~~~~~l~-~-~~PIa~dE 183 (263)
T cd03320 114 LARLRALREALPADAKLRLDANGGWSLEEALAFLEALAA----GRI----EYIEQPLPPDDLAELRRLA-A-GVPIALDE 183 (263)
T ss_pred HHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcc----cCC----ceEECCCChHHHHHHHHhh-c-CCCeeeCC
Confidence 456677777776678888888888887654444444433 221 2677788888888888887 4 7888776
Q ss_pred eccCHHHHHHHHHhc-CceeecCCCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 85 LLFAFAQAVACAEAG-VTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 85 lvFS~~Qa~aaa~Ag-a~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
-+++..+.....+.+ ++++.+-. .---|+.-.+++.++-+.+|.++-+
T Consensus 184 s~~~~~~~~~~~~~~~~d~v~~k~-~~~GGit~~~~i~~~a~~~gi~~~~ 232 (263)
T cd03320 184 SLRRLDDPLALAAAGALGALVLKP-ALLGGPRALLELAEEARARGIPAVV 232 (263)
T ss_pred ccccccCHHHHHhcCCCCEEEECc-hhcCCHHHHHHHHHHHHHcCCCEEE
Confidence 457888887777775 45666541 1124799999999999999877654
No 268
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=37.54 E-value=3.9e+02 Score=25.84 Aligned_cols=67 Identities=24% Similarity=0.259 Sum_probs=39.6
Q ss_pred HHHHHhcCceeecCCCC----------------CCCc--h--HHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH--HhC
Q psy10958 93 VACAEAGVTLISPYAPT----------------EDPG--V--VSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAG 149 (321)
Q Consensus 93 ~aaa~Aga~~iSpf~~~----------------~d~G--i--~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~--LaG 149 (321)
.++.++|+++++.+++. +-.| + ...+.++++.+..+.+..|++. .+++.+++.+ .+|
T Consensus 223 ~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aG 302 (327)
T cd04738 223 DVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG 302 (327)
T ss_pred HHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcC
Confidence 34567799888766321 0112 1 2244555555554434556654 5899999888 479
Q ss_pred CCeEEeCHHH
Q psy10958 150 CDLMTIGPKL 159 (321)
Q Consensus 150 ~d~vTipp~~ 159 (321)
+|.|-+.-.+
T Consensus 303 Ad~V~vg~~~ 312 (327)
T cd04738 303 ASLVQLYTGL 312 (327)
T ss_pred CCHHhccHHH
Confidence 9988555443
No 269
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=37.37 E-value=3.9e+02 Score=25.83 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=71.5
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCcee--eeee-----ccCHHH
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHC--NLTL-----LFAFAQ 91 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~v--n~Tl-----vFS~~Q 91 (321)
.|-.-+|..+....++.|+.|+.+.+. |.| =|+|=-|.|.+-++.+.+ ....++ |+|. .+|+.+
T Consensus 152 ~IiARTDa~~~~g~deAI~Ra~aY~eA----GAD--~ifi~~~~~~~~i~~~~~---~~~~Pl~~n~~~~~~~p~~s~~~ 222 (292)
T PRK11320 152 VIMARTDALAVEGLDAAIERAQAYVEA----GAD--MIFPEAMTELEMYRRFAD---AVKVPILANITEFGATPLFTTEE 222 (292)
T ss_pred EEEEecCcccccCHHHHHHHHHHHHHc----CCC--EEEecCCCCHHHHHHHHH---hcCCCEEEEeccCCCCCCCCHHH
Confidence 455667777777888888887777664 554 666655666555554443 224555 6662 245544
Q ss_pred HHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHHhCCC
Q psy10958 92 AVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCD 151 (321)
Q Consensus 92 a~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~LaG~d 151 (321)
..+.|..+++.-...-...+..+++++..+++.|..-. ..-..-+..++.++.|-+
T Consensus 223 ---L~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~g~~ 278 (292)
T PRK11320 223 ---LASAGVAMVLYPLSAFRAMNKAAENVYEAIRRDGTQKA-VVDTMQTREELYEYLGYH 278 (292)
T ss_pred ---HHHcCCcEEEEChHHHHHHHHHHHHHHHHHHHcCCccc-chhccCCHHHHHHhcCcH
Confidence 56778887765433334556777777777777764211 111234456666677654
No 270
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=37.26 E-value=2.5e+02 Score=27.81 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=49.6
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCC--CHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC-HHHHHHHHHHHHhhCceee
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSF--DKDASIAKAKKYIKMYEEAGIDKERILIKLAST-WEGIQAAKVLESEYGIHCN 82 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~--d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT-~eGi~A~~~L~~~~GI~vn 82 (321)
+...+.++...+..+++==-|..++ +.+..++.|.+|..- .| =-.|||=.. .+-+++++.|... ||+|.
T Consensus 84 i~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~e---aG----a~aVKlEGg~~~~~~~I~~l~~~-GIPV~ 155 (332)
T PLN02424 84 LVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKE---GG----MDAVKLEGGSPSRVTAAKAIVEA-GIAVM 155 (332)
T ss_pred HHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHH---hC----CcEEEECCCcHHHHHHHHHHHHc-CCCEE
Confidence 4456677777777776632355544 788899999998753 12 357899888 6778899999976 99987
No 271
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=37.21 E-value=4.7e+02 Score=28.82 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEecC--CHHHHHHHHHHHHhhCcee-----eeeeccCHHHHHHHHHhcCceee
Q psy10958 32 KDASIAKAKKYIKMYEEAGIDKERILIKLAS--TWEGIQAAKVLESEYGIHC-----NLTLLFAFAQAVACAEAGVTLIS 104 (321)
Q Consensus 32 ~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa--T~eGi~A~~~L~~~~GI~v-----n~TlvFS~~Qa~aaa~Aga~~iS 104 (321)
.+-.-.|.+.|.+...+.|.. ++-|=+|- |.+=++++.+..+.+|+.. .+-.+--...++..++.-+.++.
T Consensus 609 ~~lf~~qlraI~ral~d~G~~--~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vD 686 (782)
T TIGR01418 609 EEAFRLECRAIKRVREEMGLT--NVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFD 686 (782)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCC
Confidence 444555666666554333443 54455553 4444444333332336532 23333344555555554333222
Q ss_pred cC--------------CC----------CCCCc-hHHHHHHHHHHHhcCCceEEeecccC-CHhHHHHH--hCCCeEEeC
Q psy10958 105 PY--------------AP----------TEDPG-VVSVTKIYNYYKKFGYKTVVMGASFR-NTGEILAL--AGCDLMTIG 156 (321)
Q Consensus 105 pf--------------~~----------~~d~G-i~~v~~i~~~~~~~~~~T~vl~AS~r-~~~~v~~L--aG~d~vTip 156 (321)
.| .| ..+|. ...++++.+.-+++|...-+.+-.-. ++..+..+ .|.+.++++
T Consensus 687 fisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l~~~G~~~ls~~ 766 (782)
T TIGR01418 687 GFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFLVEEGIDSISLN 766 (782)
T ss_pred EEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHcCCCEEEEC
Confidence 22 11 12344 45667777778888876665432122 56666664 699999999
Q ss_pred HHHHHHHh
Q psy10958 157 PKLLEELE 164 (321)
Q Consensus 157 p~~l~~l~ 164 (321)
++......
T Consensus 767 ~d~~~~~k 774 (782)
T TIGR01418 767 PDAVLRTR 774 (782)
T ss_pred cchHHHHH
Confidence 87765543
No 272
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=36.95 E-value=3.8e+02 Score=25.62 Aligned_cols=39 Identities=13% Similarity=-0.004 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCceeeee-eccCHHHHHHHH-HhcCceeec
Q psy10958 67 IQAAKVLESEYGIHCNLT-LLFAFAQAVACA-EAGVTLISP 105 (321)
Q Consensus 67 i~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa-~Aga~~iSp 105 (321)
+..++++.+..+|++-+. -|+|.+++..+. ..||+.+..
T Consensus 181 ~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 181 WDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred HHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 334444443224444443 566666666666 345654443
No 273
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=36.89 E-value=1.3e+02 Score=28.66 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=60.5
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe---------------cCCHHHHHHHHHHHHhhCceeee
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL---------------ASTWEGIQAAKVLESEYGIHCNL 83 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI---------------PaT~eGi~A~~~L~~~~GI~vn~ 83 (321)
+..+-.-|..-..-+-..+-|.+|.++.+..||+ .+.|= |.-.+|++...+++.++|+++ +
T Consensus 17 ~~~LiaGpcviEs~d~a~~~a~~lk~~t~~lgi~---~vfKsSfDKANRsSi~s~RGpGLeeglki~~~vK~efgv~i-l 92 (279)
T COG2877 17 PFVLIAGPCVIESRDLALEIAEHLKELTEKLGIP---YVFKSSFDKANRSSIHSYRGPGLEEGLKILQEVKEEFGVPI-L 92 (279)
T ss_pred ceEEEeccceeccHHHHHHHHHHHHHHHhccCCc---eEEecccccccccccccccCCCHHHHHHHHHHHHHHcCCce-e
Confidence 4444555666667788888899999988777763 44442 566789999999999999999 8
Q ss_pred eeccCHHHHHHHHHh
Q psy10958 84 TLLFAFAQAVACAEA 98 (321)
Q Consensus 84 TlvFS~~Qa~aaa~A 98 (321)
|=|.+..|+..+|+.
T Consensus 93 TDVHe~~q~~~vA~V 107 (279)
T COG2877 93 TDVHEPSQAQPVAEV 107 (279)
T ss_pred eccCChhhcchHHhh
Confidence 999999999999886
No 274
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=35.98 E-value=1.5e+02 Score=27.80 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCC
Q psy10958 16 IPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGID 52 (321)
Q Consensus 16 ~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~ 52 (321)
.|.++-+..||.=..+.+.+++-|+.+.+++++.|+.
T Consensus 92 ~PD~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~lgL~ 128 (223)
T cd04866 92 KPSEIVFDLDPPSRDHFSLAVEAANLLKEILDALGLT 128 (223)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 4678999999987889999999999999999998764
No 275
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=35.94 E-value=4.1e+02 Score=25.69 Aligned_cols=100 Identities=13% Similarity=0.243 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhccCC--CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE---------EecC-CHHHHHHH
Q psy10958 3 KLVILFGTEILNIIP--GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI---------KLAS-TWEGIQAA 70 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~--G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I---------KIPa-T~eGi~A~ 70 (321)
+++.++.+.+.+.++ -+||+-+.+.+. +.+.. ..+..++++.|++ -+.| +.|+ -|+ .+
T Consensus 117 ~~~~eiv~avr~~~~~~~pVsvKiR~g~~-~~~~~----~~~a~~l~~~Gvd--~i~Vh~Rt~~~~y~g~~~~~~---~i 186 (312)
T PRK10550 117 ELIYQGAKAMREAVPAHLPVTVKVRLGWD-SGERK----FEIADAVQQAGAT--ELVVHGRTKEDGYRAEHINWQ---AI 186 (312)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEECCCC-CchHH----HHHHHHHHhcCCC--EEEECCCCCccCCCCCcccHH---HH
Confidence 356677777777664 478888765332 22223 3555555556664 3333 2332 443 44
Q ss_pred HHHHHhhCceeeee-eccCHHHHHHHHH-hcCceeecC-CCCCCC
Q psy10958 71 KVLESEYGIHCNLT-LLFAFAQAVACAE-AGVTLISPY-APTEDP 112 (321)
Q Consensus 71 ~~L~~~~GI~vn~T-lvFS~~Qa~aaa~-Aga~~iSpf-~~~~d~ 112 (321)
+++++..+|+|-+. -|+|.+++..+.+ .||+.+..= +...+|
T Consensus 187 ~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP 231 (312)
T PRK10550 187 GEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIP 231 (312)
T ss_pred HHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCc
Confidence 45544336776655 5788888888774 467666544 333444
No 276
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=35.73 E-value=77 Score=31.36 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=52.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH--------HHHHHHHHHhhCceeeee-eccCHHHHHHHHHh
Q psy10958 28 LSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG--------IQAAKVLESEYGIHCNLT-LLFAFAQAVACAEA 98 (321)
Q Consensus 28 la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG--------i~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~A 98 (321)
.--+.+++++.|+...+. |. -++++= +.|.| .++++..+++.|+.+.+| .+-+.+|+..-.+|
T Consensus 82 ~l~~~eeIle~Ak~ak~~----Ga--~r~c~~--aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~a 153 (335)
T COG0502 82 KLMEVEEILEAAKKAKAA----GA--TRFCMG--AAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADA 153 (335)
T ss_pred hcCCHHHHHHHHHHHHHc----CC--ceEEEE--EeccCCCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHc
Confidence 345778999999998885 32 455554 55554 567777775568888877 47889999999999
Q ss_pred cCceeecC
Q psy10958 99 GVTLISPY 106 (321)
Q Consensus 99 ga~~iSpf 106 (321)
|+++..-.
T Consensus 154 Gvd~ynhN 161 (335)
T COG0502 154 GVDRYNHN 161 (335)
T ss_pred Chhheecc
Confidence 99876543
No 277
>PRK00208 thiG thiazole synthase; Reviewed
Probab=35.70 E-value=4e+02 Score=25.41 Aligned_cols=88 Identities=17% Similarity=0.102 Sum_probs=52.5
Q ss_pred HHHHHHhccCCCcEEEEecC---CcCCCHHHHHHHHHHHHH-----------------HHHHcCCCCCceEEEec-----
Q psy10958 7 LFGTEILNIIPGRVSTEVDA---RLSFDKDASIAKAKKYIK-----------------MYEEAGIDKERILIKLA----- 61 (321)
Q Consensus 7 ~~~~~i~~~~~G~Vs~EV~p---~la~d~e~~i~~A~~L~~-----------------~~~~~gi~~~nv~IKIP----- 61 (321)
++++++.. .-+|-+||-| .+..|..++++.|+.|.+ .+.+.| +.++ -|
T Consensus 83 ~lare~~~--~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G---~~~v--mPlg~pI 155 (250)
T PRK00208 83 RLAREALG--TNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAG---CAAV--MPLGAPI 155 (250)
T ss_pred HHHHHHhC--CCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcC---CCEe--CCCCcCC
Confidence 34444442 3589999855 345688899999998832 222222 2222 22
Q ss_pred ------CCHHHHHHHHHHHHhhCceeeee-eccCHHHHHHHHHhcCceee
Q psy10958 62 ------STWEGIQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAGVTLIS 104 (321)
Q Consensus 62 ------aT~eGi~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Aga~~iS 104 (321)
.+++-++.+++. .+++|.+- -|-+.+|+..|.+.|++-+-
T Consensus 156 Gsg~gi~~~~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVl 202 (250)
T PRK00208 156 GSGLGLLNPYNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (250)
T ss_pred CCCCCCCCHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 145554555443 25666554 67788888888888886443
No 278
>PRK07695 transcriptional regulator TenI; Provisional
Probab=35.57 E-value=3.1e+02 Score=24.19 Aligned_cols=129 Identities=9% Similarity=0.132 Sum_probs=73.4
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe---------------cCCHHHHHHHHHHHHhhCceee
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL---------------ASTWEGIQAAKVLESEYGIHCN 82 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI---------------PaT~eGi~A~~~L~~~~GI~vn 82 (321)
|.-.+|+-- -..+.++..+.++++.+. |+....++|-= |....=++.+++.. . +..+=
T Consensus 27 g~~~iqlR~-k~~~~~~~~~~~~~l~~~----~~~~~~liin~~~~la~~~~~~gvHl~~~~~~~~~~r~~~-~-~~~ig 99 (201)
T PRK07695 27 EVDYIHIRE-REKSAKELYEGVESLLKK----GVPASKLIINDRVDIALLLNIHRVQLGYRSFSVRSVREKF-P-YLHVG 99 (201)
T ss_pred CCCEEEEcC-CCCCHHHHHHHHHHHHHh----CCCCCeEEEECHHHHHHHcCCCEEEeCcccCCHHHHHHhC-C-CCEEE
Confidence 555677743 245777777778877764 33322344421 11111123333322 2 45555
Q ss_pred eeeccCHHHHHHHHHhcCcee--ecC-CCCCC-----CchHHHHHHHHHHHhcCCceEEeecc-cCCHhHHHH--HhCCC
Q psy10958 83 LTLLFAFAQAVACAEAGVTLI--SPY-APTED-----PGVVSVTKIYNYYKKFGYKTVVMGAS-FRNTGEILA--LAGCD 151 (321)
Q Consensus 83 ~TlvFS~~Qa~aaa~Aga~~i--Spf-~~~~d-----~Gi~~v~~i~~~~~~~~~~T~vl~AS-~r~~~~v~~--LaG~d 151 (321)
+| +.|.+|+..+.++|++|+ +|+ ....+ .|...++++.+. .+..+++.. + +.+.+.+ ..|+|
T Consensus 100 ~s-~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-----~~ipvia~GGI-~~~~~~~~~~~Ga~ 172 (201)
T PRK07695 100 YS-VHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARA-----LSIPVIAIGGI-TPENTRDVLAAGVS 172 (201)
T ss_pred Ee-CCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-----CCCCEEEEcCC-CHHHHHHHHHcCCC
Confidence 54 789999999999999988 344 22112 245555555443 234455554 4 6666665 37999
Q ss_pred eEEeCHHHH
Q psy10958 152 LMTIGPKLL 160 (321)
Q Consensus 152 ~vTipp~~l 160 (321)
.+.+.-.++
T Consensus 173 gvav~s~i~ 181 (201)
T PRK07695 173 GIAVMSGIF 181 (201)
T ss_pred EEEEEHHHh
Confidence 987776665
No 279
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=35.37 E-value=3.8e+02 Score=25.84 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCC--CCCC----CchHHHHHHHHHHHhcCCceEEeec-ccCC
Q psy10958 68 QAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA--PTED----PGVVSVTKIYNYYKKFGYKTVVMGA-SFRN 140 (321)
Q Consensus 68 ~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~--~~~d----~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~ 140 (321)
+.+++|++. |+.+-. .+-|.+.+..+.++|+++|..=+ ..++ +-...++++.+.+ +.-|+++ .+.+
T Consensus 100 ~~i~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-----~iPviaaGGI~~ 172 (307)
T TIGR03151 100 KYIPRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAV-----SIPVIAAGGIAD 172 (307)
T ss_pred HHHHHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-----CCCEEEECCCCC
Confidence 478889876 999865 66899999999999999875532 2222 2244444444322 3445555 5888
Q ss_pred HhHHHH--HhCCCeEEeCHH
Q psy10958 141 TGEILA--LAGCDLMTIGPK 158 (321)
Q Consensus 141 ~~~v~~--LaG~d~vTipp~ 158 (321)
..++.+ ..|+|.|.+.-.
T Consensus 173 ~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 173 GRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred HHHHHHHHHcCCCEeecchH
Confidence 887776 379998866553
No 280
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=35.07 E-value=4.1e+02 Score=25.43 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=63.0
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHH-HHHHHHHHhhCc---eee-eeeccCHHH-HHHHHHh-
Q psy10958 26 ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGI-QAAKVLESEYGI---HCN-LTLLFAFAQ-AVACAEA- 98 (321)
Q Consensus 26 p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi-~A~~~L~~~~GI---~vn-~TlvFS~~Q-a~aaa~A- 98 (321)
|....++++=++=|+.|.++ ||+ .|=+=.|+....- ++++.+... |- ++. ..++=.... ...|.++
T Consensus 16 ~g~~~s~~~Ki~ia~~L~~~----Gv~--~IE~gfP~~~~~e~e~~~~i~~~-~~~~~~~~~~al~r~~~~die~a~~~~ 88 (284)
T cd07942 16 LAEPMSVEQKLRFFKLLVKI----GFK--EIEVGFPSASQTDFDFVRELIEE-DLIPDDVTIQVLTQAREDLIERTFEAL 88 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHc----CCC--EEEEeCCCCCHHHHHHHHHHHHc-cCCCCCCEEEEEcCCChhhHHHHHHHh
Confidence 44677888888888888775 776 6655569877665 889999654 43 222 245555455 5667766
Q ss_pred -cCc--eeecC------------CCCCCCchHHHHHHHHHHHhcCCc
Q psy10958 99 -GVT--LISPY------------APTEDPGVVSVTKIYNYYKKFGYK 130 (321)
Q Consensus 99 -ga~--~iSpf------------~~~~d~Gi~~v~~i~~~~~~~~~~ 130 (321)
|+. .+..| ++.-+..+..++++.++.+.+|.+
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 89 RGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Confidence 554 45555 112224567778888888888753
No 281
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=34.89 E-value=2.2e+02 Score=30.97 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhccCC-C-cEEEEecCC-c---CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH--------H--
Q psy10958 3 KLVILFGTEILNIIP-G-RVSTEVDAR-L---SFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE--------G-- 66 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~-G-~Vs~EV~p~-l---a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e--------G-- 66 (321)
|++.++.+.|.+.++ . +|++-+++. + +.+.++++ .+.+.+++.|++ -|-|-.+.++. +
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~----~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~ 675 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAV----EIARAFKAAGAD--LIDVSSGQVSKDEKPVYGRMYQ 675 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHH----HHHHHHHhcCCc--EEEeCCCCCCcCCCCCcCcccc
Confidence 567778888888764 3 688888762 1 22344444 444444555654 44443332221 1
Q ss_pred HHHHHHHHHhhCceeeee-eccCHHHHHHHHHhc-Cceeec
Q psy10958 67 IQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAG-VTLISP 105 (321)
Q Consensus 67 i~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Ag-a~~iSp 105 (321)
...++++++..+|+|-++ -+.+.+++..+.+.| ++.|+.
T Consensus 676 ~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~ 716 (765)
T PRK08255 676 TPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCAL 716 (765)
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 244556665446777665 456888899988876 666654
No 282
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=34.70 E-value=5.4e+02 Score=26.63 Aligned_cols=56 Identities=23% Similarity=0.171 Sum_probs=35.2
Q ss_pred HHcCCCCCceEEEecCCHH--HHHHHHHHHHhhCceeeeeeccCHH----------HHHHHHHhcCceeec
Q psy10958 47 EEAGIDKERILIKLASTWE--GIQAAKVLESEYGIHCNLTLLFAFA----------QAVACAEAGVTLISP 105 (321)
Q Consensus 47 ~~~gi~~~nv~IKIPaT~e--Gi~A~~~L~~~~GI~vn~TlvFS~~----------Qa~aaa~Aga~~iSp 105 (321)
.+.|++ .+-|=+|.++- -.++++..++. |..+.+++.|+.. -+..+.++|++.|+.
T Consensus 105 ~~~Gvd--~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i 172 (467)
T PRK14041 105 AEYGLD--IIRIFDALNDIRNLEKSIEVAKKH-GAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI 172 (467)
T ss_pred HHCCcC--EEEEEEeCCHHHHHHHHHHHHHHC-CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 345665 46666677762 34566666665 9988877775533 345566778876653
No 283
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=34.60 E-value=1.7e+02 Score=29.23 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=72.4
Q ss_pred CceeeeeeccCHHHHHHHHHhcCceeecC---CCCCCCchHHHHHHHHHHHhcCCceEEeecc-cCCHhHHHH-H-hCCC
Q psy10958 78 GIHCNLTLLFAFAQAVACAEAGVTLISPY---APTEDPGVVSVTKIYNYYKKFGYKTVVMGAS-FRNTGEILA-L-AGCD 151 (321)
Q Consensus 78 GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf---~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS-~r~~~~v~~-L-aG~d 151 (321)
+.+.-...|.++.-+.-+...|++.|-.+ +|.-|-|+..+..+.++-+..+-+..|++-| +|+-.+|.. + .|++
T Consensus 218 ~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~ 297 (360)
T COG1304 218 AGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGAD 297 (360)
T ss_pred CCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCc
Confidence 44555667788888888999898888877 5667778888888888777776667666654 999999997 3 6999
Q ss_pred eEEeCHHHHHHHhcCCC
Q psy10958 152 LMTIGPKLLEELENSTT 168 (321)
Q Consensus 152 ~vTipp~~l~~l~~~~~ 168 (321)
.+-+.-..|..+...+.
T Consensus 298 ~v~igrp~L~~l~~~g~ 314 (360)
T COG1304 298 AVGIGRPFLYGLAAGGE 314 (360)
T ss_pred hhhhhHHHHHHHHhccH
Confidence 99999999999988543
No 284
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=34.43 E-value=3e+02 Score=26.83 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=51.7
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH---------------HHHH
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW---------------EGIQ 68 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~---------------eGi~ 68 (321)
++.++.+.+.+.++-+|++-+ |++.+-+.+...+..+...+++.|++ .+.|- +-|. ....
T Consensus 120 ~~~eiv~avr~~v~~pVsvKi--R~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh-~Rt~~~~g~~~~~~~~~~~~~~~ 194 (333)
T PRK11815 120 LVADCVKAMKDAVSIPVTVKH--RIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVH-ARKAWLKGLSPKENREIPPLDYD 194 (333)
T ss_pred HHHHHHHHHHHHcCCceEEEE--EeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEc-CCchhhcCCCccccccCCCcCHH
Confidence 556677777766666777765 33333333444555666666666664 44432 1110 1133
Q ss_pred HHHHHHHhh-Cceeeee-eccCHHHHHHHHHhcCceeec
Q psy10958 69 AAKVLESEY-GIHCNLT-LLFAFAQAVACAEAGVTLISP 105 (321)
Q Consensus 69 A~~~L~~~~-GI~vn~T-lvFS~~Qa~aaa~Aga~~iSp 105 (321)
.++++.+.. .|++-+. -|+|.+++..+.+ ||+.+..
T Consensus 195 ~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmI 232 (333)
T PRK11815 195 RVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMI 232 (333)
T ss_pred HHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEE
Confidence 445555431 4665553 5778888877765 5554433
No 285
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=34.23 E-value=2.8e+02 Score=26.37 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCCCceEEEecCCHHH----HHHHHHHHHhhCceeeee-eccCHHHHHHHHHhcCceeecCCCCCCCchHH
Q psy10958 42 YIKMYEEAGIDKERILIKLASTWEG----IQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAGVTLISPYAPTEDPGVVS 116 (321)
Q Consensus 42 L~~~~~~~gi~~~nv~IKIPaT~eG----i~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~ 116 (321)
|.+.|.+.|.| +=++.-|-+|.+| +..+++...+--|+.++- .|=|++-+.....+||+=+|.-. +.+..
T Consensus 35 lA~~Y~e~GAD-ElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINs----aAv~~ 109 (256)
T COG0107 35 LAKRYNEEGAD-ELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINS----AAVKD 109 (256)
T ss_pred HHHHHHHcCCC-eEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeCh----hHhcC
Confidence 44455566886 8899999999999 666666665423444433 68899999999999999888762 22333
Q ss_pred HHHHHHHHHhcCCceEEeec
Q psy10958 117 VTKIYNYYKKFGYKTVVMGA 136 (321)
Q Consensus 117 v~~i~~~~~~~~~~T~vl~A 136 (321)
..-|.+.-+++|.++.|++-
T Consensus 110 p~lI~~~a~~FGsQciVvaI 129 (256)
T COG0107 110 PELITEAADRFGSQCIVVAI 129 (256)
T ss_pred hHHHHHHHHHhCCceEEEEE
Confidence 33455555666777776653
No 286
>PRK14017 galactonate dehydratase; Provisional
Probab=33.74 E-value=4.7e+02 Score=25.71 Aligned_cols=119 Identities=16% Similarity=0.106 Sum_probs=80.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.+..-+.+-||+.-+.+.+..++-++.|-. .+ -.+|-=|.-+..+...++|.+..++++.+-
T Consensus 164 ~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~----~~----~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dE 235 (382)
T PRK14017 164 VARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEP----YR----PMFIEEPVLPENAEALPEIAAQTSIPIATGE 235 (382)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcc----cC----CCeEECCCCcCCHHHHHHHHhcCCCCEEeCC
Confidence 445566666665567788888878887654444444433 22 237777776666777888876546776554
Q ss_pred eccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 85 LLFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
-+||........+.|+ +++.|= ..-.=|+..+.++.++-+.+|.+.-+
T Consensus 236 s~~~~~~~~~li~~~a~d~v~~d-~~~~GGit~~~~ia~~A~~~gi~~~~ 284 (382)
T PRK14017 236 RLFSRWDFKRVLEAGGVDIIQPD-LSHAGGITECRKIAAMAEAYDVALAP 284 (382)
T ss_pred ccCCHHHHHHHHHcCCCCeEecC-ccccCCHHHHHHHHHHHHHcCCeEee
Confidence 6799999999988874 455542 11224689999999999999877543
No 287
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=33.62 E-value=1.8e+02 Score=28.41 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=48.2
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC-------------CH-HHHHHHHHHHHhhCc-eee
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS-------------TW-EGIQAAKVLESEYGI-HCN 82 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa-------------T~-eGi~A~~~L~~~~GI-~vn 82 (321)
-.+++|++|..- |. + ..+.+++.|++ +|-|-|-+ |. .-++|++.+.+. |+ ++|
T Consensus 87 ~eitie~np~~l-t~----e----~l~~l~~~Gv~--risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~-G~~~v~ 154 (360)
T TIGR00539 87 CEITTEANPELI-TA----E----WCKGLKGAGIN--RLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKS-GIENIS 154 (360)
T ss_pred CEEEEEeCCCCC-CH----H----HHHHHHHcCCC--EEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHc-CCCeEE
Confidence 479999999754 22 2 22233334554 56555543 32 347888888876 99 589
Q ss_pred eeeccCH-HHHH--------HHHHhcCceeecC
Q psy10958 83 LTLLFAF-AQAV--------ACAEAGVTLISPY 106 (321)
Q Consensus 83 ~TlvFS~-~Qa~--------aaa~Aga~~iSpf 106 (321)
+.++|++ .|-. .+.+.|+.-++.|
T Consensus 155 ~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y 187 (360)
T TIGR00539 155 LDLMYGLPLQTLNSLKEELKLAKELPINHLSAY 187 (360)
T ss_pred EeccCCCCCCCHHHHHHHHHHHHccCCCEEEee
Confidence 9999985 3332 2445577777766
No 288
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.43 E-value=3.2e+02 Score=27.24 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=57.4
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCc-eEEEecCC---------HHHHHHHHHHHHhhCceeeeeeccC
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKER-ILIKLAST---------WEGIQAAKVLESEYGIHCNLTLLFA 88 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~n-v~IKIPaT---------~eGi~A~~~L~~~~GI~vn~TlvFS 88 (321)
++.+=+-|.--++.+.+++-|+++.+. |+.-=| -..| |-| .+|++..++...+.|+.+ +|-+|+
T Consensus 101 ~l~vIAGPCsIEs~eq~l~~A~~lk~~----g~~~~r~g~~k-pRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~-~tev~d 174 (352)
T PRK13396 101 PVVVVAGPCSVENEEMIVETAKRVKAA----GAKFLRGGAYK-PRTSPYAFQGHGESALELLAAAREATGLGI-ITEVMD 174 (352)
T ss_pred eEEEEEeCCcccCHHHHHHHHHHHHHc----CCCEEEeeeec-CCCCCcccCCchHHHHHHHHHHHHHcCCcE-EEeeCC
Confidence 467777899999999999999999886 221111 1223 433 367888888777779999 799999
Q ss_pred HHHHHHHHHhcCce
Q psy10958 89 FAQAVACAEAGVTL 102 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~ 102 (321)
..|+-.+++. +++
T Consensus 175 ~~~v~~~~~~-~d~ 187 (352)
T PRK13396 175 AADLEKIAEV-ADV 187 (352)
T ss_pred HHHHHHHHhh-CCe
Confidence 9999999885 543
No 289
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=33.28 E-value=4.7e+02 Score=27.13 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=43.1
Q ss_pred HHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeecc----------CHHHHHHHHHhcCceeecC
Q psy10958 44 KMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLF----------AFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 44 ~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvF----------S~~Qa~aaa~Aga~~iSpf 106 (321)
+...+.||+.=||.-.+---..-..+++..++. |..+-++.+| -+..+..+.++||+.|+.=
T Consensus 112 ~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~-G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~Ik 183 (468)
T PRK12581 112 SLSAQNGIDVFRIFDALNDPRNIQQALRAVKKT-GKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIK 183 (468)
T ss_pred HHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHc-CCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEC
Confidence 334456777656655544444567788888876 9998888888 4566777888899877643
No 290
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=33.24 E-value=1.3e+02 Score=30.38 Aligned_cols=125 Identities=13% Similarity=0.017 Sum_probs=68.6
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHH-------HH-HHHHcCCCCCc--eEEEec--CC---------
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKY-------IK-MYEEAGIDKER--ILIKLA--ST--------- 63 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L-------~~-~~~~~gi~~~n--v~IKIP--aT--------- 63 (321)
+.++.+.+.+..+-+|.+-++|.+. |...+.+.|.+- +. .....+||.+. -...++ .+
T Consensus 170 ~~~i~~~Vk~~~~iPv~vKLsPn~t-~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~al 248 (385)
T PLN02495 170 LEEVCGWINAKATVPVWAKMTPNIT-DITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAV 248 (385)
T ss_pred HHHHHHHHHHhhcCceEEEeCCChh-hHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhh
Confidence 3445555555556789999998654 455555544432 11 11112232111 111111 12
Q ss_pred -HHHHHHHHHHHHhh------Cceeee-eeccCHHHHHHHHHhcCceeecCCCCCCCchHHH----HHHHHHHHhcCCc
Q psy10958 64 -WEGIQAAKVLESEY------GIHCNL-TLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSV----TKIYNYYKKFGYK 130 (321)
Q Consensus 64 -~eGi~A~~~L~~~~------GI~vn~-TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v----~~i~~~~~~~~~~ 130 (321)
|-.+..++++.+.. ++++-. ..|.|-+.|+....|||+.+..+...-..|...+ +.+.++++++||+
T Consensus 249 kpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~~G~~ 327 (385)
T PLN02495 249 RPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMKKHNFS 327 (385)
T ss_pred hHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHHHcCCC
Confidence 22334333444331 355554 4899999999999999999999954334444444 4566667777654
No 291
>PRK14057 epimerase; Provisional
Probab=33.09 E-value=1.6e+02 Score=27.99 Aligned_cols=128 Identities=11% Similarity=0.040 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCce-------eeeeeccCHHHHHHHHHh---c
Q psy10958 30 FDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIH-------CNLTLLFAFAQAVACAEA---G 99 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~-------vn~TlvFS~~Qa~aaa~A---g 99 (321)
.|..-|+++-.++++.|.+.|.+ .|.|=+=+|..-.+.++.+++. |++ +-+-+.+++.--+...+- .
T Consensus 78 ~DvHLMV~~P~~~i~~~~~aGad--~It~H~Ea~~~~~~~l~~Ir~~-G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~ 154 (254)
T PRK14057 78 KDVHLMVADQWTAAQACVKAGAH--CITLQAEGDIHLHHTLSWLGQQ-TVPVIGGEMPVIRGISLCPATPLDVIIPILSD 154 (254)
T ss_pred eeEEeeeCCHHHHHHHHHHhCCC--EEEEeeccccCHHHHHHHHHHc-CCCcccccccceeEEEECCCCCHHHHHHHHHh
Confidence 46666666677777777766654 8888888877666777777765 663 111222222111111111 1
Q ss_pred Cc---eeecC-CCCC----CCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHHHH
Q psy10958 100 VT---LISPY-APTE----DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 100 a~---~iSpf-~~~~----d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~~l 160 (321)
++ ++|.. +-.+ ...+.-++++.++++++++++.+-+=.=-|.+.+.. -+|+|.+.....++
T Consensus 155 vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF 225 (254)
T PRK14057 155 VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225 (254)
T ss_pred CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhh
Confidence 22 23333 1111 134667788888888888887777655455566655 48999998886654
No 292
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=32.52 E-value=5.3e+02 Score=25.89 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=65.6
Q ss_pred cEEEEe--cCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHh-----hCceeeeeeccCHHH
Q psy10958 19 RVSTEV--DARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESE-----YGIHCNLTLLFAFAQ 91 (321)
Q Consensus 19 ~Vs~EV--~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~-----~GI~vn~TlvFS~~Q 91 (321)
+|++|- +. -..|.+++++|-++|.+. +-+=|=|-+|.-. --+|++++.++ ..|++-+-.=|...-
T Consensus 16 PI~VQSMt~t-~t~Dv~atv~QI~~L~~a------GceivRvavp~~~-~a~al~~I~~~l~~~g~~iPlVADIHFd~~l 87 (359)
T PF04551_consen 16 PISVQSMTNT-DTRDVEATVAQIKRLEEA------GCEIVRVAVPDME-AAEALKEIKKRLRALGSPIPLVADIHFDYRL 87 (359)
T ss_dssp --EEEEE--S--TT-HHHHHHHHHHHHHC------T-SEEEEEE-SHH-HHHHHHHHHHHHHCTT-SS-EEEEESTTCHH
T ss_pred CEEEEecCCC-CcccHHHHHHHHHHHHHc------CCCEEEEcCCCHH-HHHHHHHHHHhhccCCCCCCeeeecCCCHHH
Confidence 788883 22 357999999999999885 3456777777544 35555555554 457777778899999
Q ss_pred HHHHHHhcCceeecC-CCCC-------CCchHHHHHHHHHHHhcCCceEE
Q psy10958 92 AVACAEAGVTLISPY-APTE-------DPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 92 a~aaa~Aga~~iSpf-~~~~-------d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
|+.|+++ ++-+-.- +... ..--..++.+.+.-+++|...+|
T Consensus 88 Al~a~~~-v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRI 136 (359)
T PF04551_consen 88 ALEAIEA-VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRI 136 (359)
T ss_dssp HHHHHHC--SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHH-hCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEE
Confidence 9999998 7644333 2221 12256678888888888876654
No 293
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=32.46 E-value=6.4e+02 Score=26.87 Aligned_cols=87 Identities=22% Similarity=0.155 Sum_probs=54.6
Q ss_pred CcEEEEe---------cCCcCCCHHHHHHHHHHH-----------------------------HHHHHHcCCCCCceEEE
Q psy10958 18 GRVSTEV---------DARLSFDKDASIAKAKKY-----------------------------IKMYEEAGIDKERILIK 59 (321)
Q Consensus 18 G~Vs~EV---------~p~la~d~e~~i~~A~~L-----------------------------~~~~~~~gi~~~nv~IK 59 (321)
|.-|+|+ -|.++.|..+.++..++. ++...+.|++.=||...
T Consensus 40 G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~ 119 (593)
T PRK14040 40 GYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDA 119 (593)
T ss_pred CCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeee
Confidence 7888888 455677877777776642 23344567775555543
Q ss_pred ecCCHHHHHHHHHHHHhhCceeeeeecc--CH--------HHHHHHHHhcCceeec
Q psy10958 60 LASTWEGIQAAKVLESEYGIHCNLTLLF--AF--------AQAVACAEAGVTLISP 105 (321)
Q Consensus 60 IPaT~eGi~A~~~L~~~~GI~vn~TlvF--S~--------~Qa~aaa~Aga~~iSp 105 (321)
+---+.-..+++..++. |..+-++++| |. .-+..+.++|++.++.
T Consensus 120 lnd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i 174 (593)
T PRK14040 120 MNDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI 174 (593)
T ss_pred CCcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEE
Confidence 32223345577777765 8887767666 44 4466677789876654
No 294
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=32.36 E-value=4.8e+02 Score=25.41 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=79.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.+...+.+-+|+.-+.+.+..++-++.|-.. + -.+|-=|.-+..+...++|....++++.+-
T Consensus 174 ~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~----~----~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE 245 (368)
T TIGR02534 174 VAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADA----G----VELIEQPTPAENREALARLTRRFNVPIMADE 245 (368)
T ss_pred HHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhc----C----hhheECCCCcccHHHHHHHHHhCCCCEEeCc
Confidence 4566677777755677888888888887666666555442 2 235666665555566666765546776544
Q ss_pred eccCHHHHHHHHHhc-CceeecCCCCCCCchHHHHHHHHHHHhcCCce
Q psy10958 85 LLFAFAQAVACAEAG-VTLISPYAPTEDPGVVSVTKIYNYYKKFGYKT 131 (321)
Q Consensus 85 lvFS~~Qa~aaa~Ag-a~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T 131 (321)
-++++.+....+++| ++++.|= ..-.-|+....++..+-+.+|.++
T Consensus 246 ~~~~~~~~~~~~~~~~~d~~~~d-~~~~GGi~~~~~i~~lA~~~gi~~ 292 (368)
T TIGR02534 246 SVTGPADALAIAKASAADVFALK-TTKSGGLLESKKIAAIAEAAGIAL 292 (368)
T ss_pred ccCCHHHHHHHHHhCCCCEEEEc-ccccCCHHHHHHHHHHHHHcCCce
Confidence 578999999998886 4565542 122357899999999999998775
No 295
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=32.28 E-value=5.7e+02 Score=26.21 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=76.3
Q ss_pred HHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCC-----CCCceEEEecCC-----HHH--HHHHHHHHH
Q psy10958 8 FGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGI-----DKERILIKLAST-----WEG--IQAAKVLES 75 (321)
Q Consensus 8 ~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi-----~~~nv~IKIPaT-----~eG--i~A~~~L~~ 75 (321)
...+.++. |--.+|+-- -..+.++..+.++++..++++.|+ ++..+..++.+. ... ...++.+..
T Consensus 312 ~l~~~l~~--Gv~~vqlR~-k~~~~~~~~~~a~~l~~~~~~~~~~liind~~~lA~~~~adGvHl~~~d~~~~~~r~~~~ 388 (502)
T PLN02898 312 AVRAAIEG--GATIVQLRE-KEAETREFIEEAKACLAICRSYGVPLLINDRVDVALACDADGVHLGQSDMPVRLARSLLG 388 (502)
T ss_pred HHHHHHHc--CCCEEEEcc-CCCCHHHHHHHHHHHHHHHHHhCCEEEEcChHHHHHhcCCCEEEeChHhcCHHHHHHhcC
Confidence 34444443 444455521 245778999999999998877654 111222222221 111 122233221
Q ss_pred hhCceeeeeeccCHHHHHHHHHhcCceee--cC-CCCC---C--CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH
Q psy10958 76 EYGIHCNLTLLFAFAQAVACAEAGVTLIS--PY-APTE---D--PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL 147 (321)
Q Consensus 76 ~~GI~vn~TlvFS~~Qa~aaa~Aga~~iS--pf-~~~~---d--~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L 147 (321)
. +. +-..-+.+.+++..|.+.|++|+. |+ .-.. . .|...++.+.+. .+..|++-.=-+.+.+.++
T Consensus 389 ~-~~-~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~-----~~~Pv~aiGGI~~~~~~~~ 461 (502)
T PLN02898 389 P-GK-IIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEA-----SKLPVVAIGGISASNAASV 461 (502)
T ss_pred C-CC-EEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc-----CCCCEEEECCCCHHHHHHH
Confidence 1 22 233456899999999999999985 44 2111 1 256666665332 2344554443345555542
Q ss_pred --hCCC---eEEeCHHHH
Q psy10958 148 --AGCD---LMTIGPKLL 160 (321)
Q Consensus 148 --aG~d---~vTipp~~l 160 (321)
+|++ .|.+--.++
T Consensus 462 ~~~G~~~~~gvav~~~i~ 479 (502)
T PLN02898 462 MESGAPNLKGVAVVSALF 479 (502)
T ss_pred HHcCCCcCceEEEEeHHh
Confidence 4666 887666655
No 296
>PRK11059 regulatory protein CsrD; Provisional
Probab=31.47 E-value=6.4e+02 Score=26.52 Aligned_cols=135 Identities=11% Similarity=0.049 Sum_probs=83.6
Q ss_pred HHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHc-CCCCCceEEEecCC------HHHHHHHHHHHHhhCceee
Q psy10958 10 TEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEA-GIDKERILIKLAST------WEGIQAAKVLESEYGIHCN 82 (321)
Q Consensus 10 ~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~-gi~~~nv~IKIPaT------~eGi~A~~~L~~~~GI~vn 82 (321)
..+....+.++++-++|..-.+.+ -...|.....+. +..++++++-|+.+ ..-.+.++.|.+. |+++-
T Consensus 476 ~~l~~~~~~~l~inls~~~l~~~~----f~~~l~~~l~~~~~~~~~~l~~Ei~E~~~~~~~~~~~~~l~~L~~~-G~~ia 550 (640)
T PRK11059 476 PLLRYWPEENLSINLSVDSLLSRA----FQRWLRDTLLQCPRSQRKRLIFELAEADVCQHISRLRPVLRMLRGL-GCRLA 550 (640)
T ss_pred HHHHhCCCCeEEEEcCHHHhCChh----HHHHHHHHHHhcCCCCcceEEEEEechhhhcCHHHHHHHHHHHHHC-CCEEE
Confidence 333334356889998876555542 223344444455 67789999999986 3446777888875 99987
Q ss_pred eeec---cCHHHHHHHHHhcCceeecC-----CCCCC-CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCC
Q psy10958 83 LTLL---FAFAQAVACAEAGVTLISPY-----APTED-PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCD 151 (321)
Q Consensus 83 ~Tlv---FS~~Qa~aaa~Aga~~iSpf-----~~~~d-~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d 151 (321)
+-=. |+--+++.-. ..+||-.= ....+ ..-..++.+..+.+.. ..+|++-.+.+.+++..+ .|||
T Consensus 551 iddfG~g~~s~~~L~~l--~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~--~i~viAegVEt~~~~~~l~~lGvd 626 (640)
T PRK11059 551 VDQAGLTVVSTSYIKEL--NVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGT--ETQVFATGVESREEWQTLQELGVS 626 (640)
T ss_pred EECCCCCcccHHHHHhC--CCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHhCCC
Confidence 7422 2222333222 34544322 11122 3345567777776655 588999999999988874 7999
Q ss_pred eE
Q psy10958 152 LM 153 (321)
Q Consensus 152 ~v 153 (321)
.+
T Consensus 627 ~~ 628 (640)
T PRK11059 627 GG 628 (640)
T ss_pred ee
Confidence 75
No 297
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=31.46 E-value=3.9e+02 Score=24.73 Aligned_cols=127 Identities=13% Similarity=0.195 Sum_probs=76.0
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH------HHHHHHHHHHhhCceeeee---eccC
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE------GIQAAKVLESEYGIHCNLT---LLFA 88 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e------Gi~A~~~L~~~~GI~vn~T---lvFS 88 (321)
-++++-++|..-. .+.++.. +.+.+++.|+++.++++-|.-|.. -.+.++.|.+. |+++-+= .=||
T Consensus 88 ~~l~iNis~~~l~-~~~~~~~---l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~-G~~ialDDFGtG~s 162 (256)
T COG2200 88 LRLAVNLSPVQLR-SPGLVDL---LLRLLARLGLPPHRLVLEITESALIDDLDTALALLRQLREL-GVRIALDDFGTGYS 162 (256)
T ss_pred ceEEEEcCHHHhC-CchHHHH---HHHHHHHhCCCcceEEEEEeCchhhcCHHHHHHHHHHHHHC-CCeEEEECCCCCHH
Confidence 5789999884333 4455554 445555578998999999887663 34567888876 9888442 1122
Q ss_pred HHHHHHHHHhcCceee----cCCCCC-C-CchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeE
Q psy10958 89 FAQAVACAEAGVTLIS----PYAPTE-D-PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLM 153 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~iS----pf~~~~-d-~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~v 153 (321)
--.++.-. ..+++= ...... + ..-..++.+.+.-++.| .++++-.+.+.+++.. -.|||.+
T Consensus 163 sl~~L~~l--~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~--~~vvaEGVEt~~ql~~L~~~G~~~~ 231 (256)
T COG2200 163 SLSYLKRL--PPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLG--LTVVAEGVETEEQLDLLRELGCDYL 231 (256)
T ss_pred HHHHHhhC--CCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCC--CEEEEeecCCHHHHHHHHHcCCCeE
Confidence 22222111 111110 001122 2 34467888888877764 5677777888777776 4799975
No 298
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=31.39 E-value=7.4e+02 Score=27.26 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=53.0
Q ss_pred cEEEEec-CCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH--HHHHHHH-HHHh-hCceeeeeeccCHHHHH
Q psy10958 19 RVSTEVD-ARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE--GIQAAKV-LESE-YGIHCNLTLLFAFAQAV 93 (321)
Q Consensus 19 ~Vs~EV~-p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e--Gi~A~~~-L~~~-~GI~vn~TlvFS~~Qa~ 93 (321)
+|++|-- ..-..|++++++|.++|.+. +.+=|=|-+|.-.+ .++.|++ |.++ ..|+.-+-.=|...-|+
T Consensus 95 PI~VQSMt~t~T~D~eatv~Qi~~l~~a------GceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 168 (733)
T PLN02925 95 PIRIQTMTTTDTKDVEATVDQVMRIADK------GADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVAL 168 (733)
T ss_pred ceEEEecCCCCcccHHHHHHHHHHHHHc------CCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHH
Confidence 7888831 12357999999999999985 35567777776654 3554443 4433 13555666789999999
Q ss_pred HHHHhcCc
Q psy10958 94 ACAEAGVT 101 (321)
Q Consensus 94 aaa~Aga~ 101 (321)
.|+++ ++
T Consensus 169 ~a~~~-vd 175 (733)
T PLN02925 169 RVAEC-FD 175 (733)
T ss_pred HHHHh-cC
Confidence 99998 65
No 299
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=31.05 E-value=4.3e+02 Score=24.38 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=69.5
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHc--CCCCCce-EEEec------CCHHH-HHHHHHHHHhhCceeeeee-
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEA--GIDKERI-LIKLA------STWEG-IQAAKVLESEYGIHCNLTL- 85 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~--gi~~~nv-~IKIP------aT~eG-i~A~~~L~~~~GI~vn~Tl- 85 (321)
+-++.+|+ .+.|.+.+.+-|+.+.+..... +.+-|+. ++|-= -.++- .+.++.+.+. ++++-+=+
T Consensus 72 ~~p~~vqi---~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~-~~pVsvKir 147 (233)
T cd02911 72 NVLVGVNV---RSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET-GVPVSVKIR 147 (233)
T ss_pred CCeEEEEe---cCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc-CCCEEEEEc
Confidence 34899999 7899999999998886532111 1111111 11100 01111 2334444432 55554422
Q ss_pred ----ccCHHHHHHHHHhcCceeecCCCCC--CCchHHHHHHHHHHHhcCCceEEee-cccCCHhHHHH--HhCCCeEEeC
Q psy10958 86 ----LFAFAQAVACAEAGVTLISPYAPTE--DPGVVSVTKIYNYYKKFGYKTVVMG-ASFRNTGEILA--LAGCDLMTIG 156 (321)
Q Consensus 86 ----vFS~~Qa~aaa~Aga~~iSpf~~~~--d~Gi~~v~~i~~~~~~~~~~T~vl~-AS~r~~~~v~~--LaG~d~vTip 156 (321)
.-+..-+..+.++|++++.+-.... ..-...++++. .+.-|++ -++.+.+++.+ ..|||.|-+.
T Consensus 148 ~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-------~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 148 AGVDVDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-------TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-------CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 3356666777889999887753221 11123333321 2333444 46888888887 3799988553
No 300
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.92 E-value=2.3e+02 Score=25.64 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCceeecCCCC--C---CCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHHHH
Q psy10958 89 FAQAVACAEAGVTLISPYAPT--E---DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~iSpf~~~--~---d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~~l 160 (321)
.+++..+.+.|++++...... . ..-...++++ .+.++.+ -+++..+|+.+++.. .+|||.+.+.-..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i---~~~~~~~-l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKI---IEAVGVP-VQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHH---HHHcCCc-EEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 466777778899888666221 1 1223344444 4444333 344788999988776 47999987766443
No 301
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.86 E-value=1.7e+02 Score=29.27 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCceeeeee--ccCHHHHHHHHHhcCceeecCCCCCCCch----HHHHHHHHHHHhcCCceEE-eecccCC
Q psy10958 68 QAAKVLESEYGIHCNLTL--LFAFAQAVACAEAGVTLISPYAPTEDPGV----VSVTKIYNYYKKFGYKTVV-MGASFRN 140 (321)
Q Consensus 68 ~A~~~L~~~~GI~vn~Tl--vFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi----~~v~~i~~~~~~~~~~T~v-l~AS~r~ 140 (321)
+-++++.+. |+++.+-+ ....+.+.++.++|++++...+|..+.+. .....+.++.++.+.+... -.++.+.
T Consensus 122 ~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~ 200 (368)
T PRK08649 122 ERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTT 200 (368)
T ss_pred HHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHH
Q ss_pred HhHHHHHhCCCeEEe
Q psy10958 141 TGEILALAGCDLMTI 155 (321)
Q Consensus 141 ~~~v~~LaG~d~vTi 155 (321)
..+..+ +|||.|-+
T Consensus 201 A~~l~~-aGAD~V~V 214 (368)
T PRK08649 201 ALHLMR-TGAAGVLV 214 (368)
T ss_pred HHHHHH-cCCCEEEE
No 302
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=30.74 E-value=6.4e+02 Score=26.34 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=70.6
Q ss_pred cCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH-HHHHHHHHHHHhh--------CceeeeeeccCH--HHHH
Q psy10958 25 DARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW-EGIQAAKVLESEY--------GIHCNLTLLFAF--AQAV 93 (321)
Q Consensus 25 ~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~-eGi~A~~~L~~~~--------GI~vn~TlvFS~--~Qa~ 93 (321)
.|.+..++++-++-|+.|.++ ||+ .|=+=.|+.. +=..+++.+.+.. +...|++.+-.. .-..
T Consensus 98 ~~gv~fs~eeKi~Ia~~L~~~----GVd--~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId 171 (503)
T PLN03228 98 SPGGSLTPPQKLEIARQLAKL----RVD--IMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIE 171 (503)
T ss_pred CCCCCCCHHHHHHHHHHHHHc----CCC--EEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHH
Confidence 355677888888877777775 776 6667778664 3356677776430 122344322111 1223
Q ss_pred HHHHh----cCceeecC------------CCCCCCchHHHHHHHHHHHhcCCc-eEEee--cccCCHhHHHH------Hh
Q psy10958 94 ACAEA----GVTLISPY------------APTEDPGVVSVTKIYNYYKKFGYK-TVVMG--ASFRNTGEILA------LA 148 (321)
Q Consensus 94 aaa~A----ga~~iSpf------------~~~~d~Gi~~v~~i~~~~~~~~~~-T~vl~--AS~r~~~~v~~------La 148 (321)
+|.++ |+..+..| +...+..+..+.++.++.+.+|+. +.+-. ++-.+.+++.+ -+
T Consensus 172 ~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~ 251 (503)
T PLN03228 172 AAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKA 251 (503)
T ss_pred HHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhc
Confidence 34444 44555545 111224577788888999999875 33322 22234555554 26
Q ss_pred CCCeEEeC
Q psy10958 149 GCDLMTIG 156 (321)
Q Consensus 149 G~d~vTip 156 (321)
|+|.|.++
T Consensus 252 Gad~I~l~ 259 (503)
T PLN03228 252 GATSVGIA 259 (503)
T ss_pred CCCEEEEe
Confidence 88887653
No 303
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.48 E-value=4.3e+02 Score=24.23 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeecc--CHHHHHHHHHhcCc---eeec
Q psy10958 31 DKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLF--AFAQAVACAEAGVT---LISP 105 (321)
Q Consensus 31 d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvF--S~~Qa~aaa~Aga~---~iSp 105 (321)
|..-|++.-.+++..|.+.|.+ .+.|=+=+|..=.+.++.+++. |+++=+.+-- .++...-... .++ ++|.
T Consensus 62 dvHLMv~~p~~~i~~~~~~gad--~i~~H~Ea~~~~~~~l~~ik~~-g~k~GlalnP~Tp~~~i~~~l~-~~D~vlvMtV 137 (220)
T PRK08883 62 DVHLMVKPVDRIIPDFAKAGAS--MITFHVEASEHVDRTLQLIKEH-GCQAGVVLNPATPLHHLEYIMD-KVDLILLMSV 137 (220)
T ss_pred EEEeccCCHHHHHHHHHHhCCC--EEEEcccCcccHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHH-hCCeEEEEEe
Confidence 4444555556666666666654 7888887777655677777765 7765444332 2222221111 222 3444
Q ss_pred C---CC--CCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEeCHHHHH
Q psy10958 106 Y---AP--TEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 161 (321)
Q Consensus 106 f---~~--~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp~~l~ 161 (321)
. +. .-..++.-++++.++.++++++..+.+-.=-|.+.+.. -+|+|.+.+.-.+++
T Consensus 138 ~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 138 NPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred cCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhC
Confidence 3 11 11256778888888888888776664443233666666 489999988766543
No 304
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.48 E-value=4.8e+02 Score=24.75 Aligned_cols=74 Identities=16% Similarity=0.090 Sum_probs=53.6
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe---cCCH---------HHHHHHHHHHHhhCceeeeeeccC
Q psy10958 21 STEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL---ASTW---------EGIQAAKVLESEYGIHCNLTLLFA 88 (321)
Q Consensus 21 s~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI---PaT~---------eGi~A~~~L~~~~GI~vn~TlvFS 88 (321)
++=.-|....+.|.+.+-|+.+.++ |+ +++-|= |-|. +|++-..+..++.|+.+ +|-+|+
T Consensus 17 ~~iaGPC~vEs~e~~~~~a~~~~~~----g~---~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~-~Tev~d 88 (250)
T PRK13397 17 NFIVGPCSIESYDHIRLAASSAKKL----GY---NYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLS-VSEIMS 88 (250)
T ss_pred cEEeccCccCCHHHHHHHHHHHHHc----CC---CEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCE-EEeeCC
Confidence 4445788888899999999985554 44 333221 4433 57777777777779999 889999
Q ss_pred HHHHHHHHHhcCcee
Q psy10958 89 FAQAVACAEAGVTLI 103 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~i 103 (321)
..|+-.+++ +++++
T Consensus 89 ~~~v~~~~e-~vdil 102 (250)
T PRK13397 89 ERQLEEAYD-YLDVI 102 (250)
T ss_pred HHHHHHHHh-cCCEE
Confidence 999999999 57644
No 305
>PLN02411 12-oxophytodienoate reductase
Probab=30.45 E-value=5.6e+02 Score=25.58 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhccCC-CcEEEEecCCc-------CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecC------------
Q psy10958 3 KLVILFGTEILNIIP-GRVSTEVDARL-------SFDKDASIAKAKKYIKMYEEAGIDKERILIKLAS------------ 62 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~-G~Vs~EV~p~l-------a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa------------ 62 (321)
|++.++...|++.+. .+|.+-+||.- ....+..+.-++.|..+....|.+-+-+-|..+.
T Consensus 216 RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~ 295 (391)
T PLN02411 216 RFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRH 295 (391)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccccc
Confidence 567788888888773 47888888721 1112333333333333211122101122222211
Q ss_pred CHHH--HHHHHHHHHhhCceeeeeeccCHHHHHHHHHhc-Cceeec
Q psy10958 63 TWEG--IQAAKVLESEYGIHCNLTLLFAFAQAVACAEAG-VTLISP 105 (321)
Q Consensus 63 T~eG--i~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Ag-a~~iSp 105 (321)
...| ...++++++..+++|-++.-++..++..+.+.| +++|+.
T Consensus 296 ~~~~~~~~~a~~ik~~v~~pvi~~G~i~~~~a~~~l~~g~aDlV~~ 341 (391)
T PLN02411 296 GSEEEEAQLMRTLRRAYQGTFMCSGGFTRELGMQAVQQGDADLVSY 341 (391)
T ss_pred CCccchhHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEE
Confidence 1112 234455655447899999888999999999888 677764
No 306
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=30.32 E-value=2e+02 Score=27.01 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCC
Q psy10958 16 IPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGID 52 (321)
Q Consensus 16 ~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~ 52 (321)
.|.++-+..||. ..+.++.++-|..+.+++++.|+.
T Consensus 99 ~PD~~vfDLDP~-~~~f~~v~~~A~~~r~~L~~~gL~ 134 (228)
T cd04864 99 HPDLMVFDLDPS-ADDIEAVRTAALAVRELLDELGLP 134 (228)
T ss_pred CCCEEEEecCCC-CCCHHHHHHHHHHHHHHHHHcCCc
Confidence 367899999998 779999999999999999998764
No 307
>PRK14847 hypothetical protein; Provisional
Probab=30.09 E-value=60 Score=32.04 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=68.0
Q ss_pred EEEEecCCcCC--CHHHHHHHHHHHHHHHHHcCCCCCc-eEEEecCCH-----HH-HHHHHHHHHh--------hCceee
Q psy10958 20 VSTEVDARLSF--DKDASIAKAKKYIKMYEEAGIDKER-ILIKLASTW-----EG-IQAAKVLESE--------YGIHCN 82 (321)
Q Consensus 20 Vs~EV~p~la~--d~e~~i~~A~~L~~~~~~~gi~~~n-v~IKIPaT~-----eG-i~A~~~L~~~--------~GI~vn 82 (321)
+.++++|.-+. |.+-+++-++...+ .+|.++.+ ..|-+|-|- .. -..++.|.+. .|++|.
T Consensus 172 ~~V~~~~EDasRad~dfL~~~~~~a~~---~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~H 248 (333)
T PRK14847 172 WIYEYSPETFSLAELDFAREVCDAVSA---IWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPH 248 (333)
T ss_pred eEEEEeeecCCCCCHHHHHHHHHHHHH---HhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 45666654433 33334333333322 23555433 456777654 22 2445555322 367888
Q ss_pred eeeccCHHHHHHHHHhcCceee--cCCCCCCCchHHHHHHHHHHHhcCCceEEe
Q psy10958 83 LTLLFAFAQAVACAEAGVTLIS--PYAPTEDPGVVSVTKIYNYYKKFGYKTVVM 134 (321)
Q Consensus 83 ~TlvFS~~Qa~aaa~Aga~~iS--pf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl 134 (321)
=++=+++.-+++|.+|||++++ |++.-+..|-....++...++..|++|.+-
T Consensus 249 nD~GlA~ANslaA~~aGa~~i~~tv~G~GERaGNa~lE~v~~~L~~~g~~~~id 302 (333)
T PRK14847 249 NDRGTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLERQGIASGLD 302 (333)
T ss_pred CCCchHHHHHHHHHHhCCCEEEeeCCcCCccccchhHHHHHHHHHhcCCCCCcC
Confidence 8888999999999999999986 776555567666666666666667776543
No 308
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=30.09 E-value=3.7e+02 Score=23.35 Aligned_cols=130 Identities=12% Similarity=0.159 Sum_probs=76.3
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE--------EecC-----CHHH--HHHHHHHHHhhCceeeeee
Q psy10958 21 STEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI--------KLAS-----TWEG--IQAAKVLESEYGIHCNLTL 85 (321)
Q Consensus 21 s~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I--------KIPa-----T~eG--i~A~~~L~~~~GI~vn~Tl 85 (321)
.+|+.- -..+..++.+.++++..+++..|+ .++| +..+ +... ...++.+... +..+ .+-
T Consensus 29 ~v~lR~-~~~~~~~~~~~~~~l~~~~~~~~~---~l~i~~~~~la~~~g~~GvHl~~~~~~~~~~r~~~~~-~~~i-g~s 102 (196)
T TIGR00693 29 LVQLRD-KGSNTRERLALAEKLQELCRRYGV---PFIVNDRVDLALALGADGVHLGQDDLPASEARALLGP-DKII-GVS 102 (196)
T ss_pred EEEEec-CCCCHHHHHHHHHHHHHHHHHhCC---eEEEECHHHHHHHcCCCEEecCcccCCHHHHHHhcCC-CCEE-EEe
Confidence 445521 245778888888888888766553 3444 1111 1111 2344444433 4444 455
Q ss_pred ccCHHHHHHHHHhcCceee--c-CCCC------CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEE
Q psy10958 86 LFAFAQAVACAEAGVTLIS--P-YAPT------EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMT 154 (321)
Q Consensus 86 vFS~~Qa~aaa~Aga~~iS--p-f~~~------~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vT 154 (321)
+.|..++..|.+.|++|+. | |.-. ...|...++.+.+.+ .+..|++.+=-+.+.+.. ..|++.+.
T Consensus 103 ~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~----~~~pv~a~GGI~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 103 THNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS----IDIPIVAIGGITLENAAEVLAAGADGVA 178 (196)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEEECCcCHHHHHHHHHcCCCEEE
Confidence 7899999999999999875 4 4211 113666666665432 124455554225666665 46999998
Q ss_pred eCHHHH
Q psy10958 155 IGPKLL 160 (321)
Q Consensus 155 ipp~~l 160 (321)
+.-.++
T Consensus 179 ~~~~i~ 184 (196)
T TIGR00693 179 VVSAIM 184 (196)
T ss_pred EhHHhh
Confidence 877766
No 309
>PRK07094 biotin synthase; Provisional
Probab=29.99 E-value=2.2e+02 Score=27.09 Aligned_cols=101 Identities=15% Similarity=0.255 Sum_probs=55.2
Q ss_pred cCCHH-HHHHHHHHHHhhCceeeeeeccCH-H----H----HHHHHHhcCce--eecC-----CCCC---CCchHHHHHH
Q psy10958 61 ASTWE-GIQAAKVLESEYGIHCNLTLLFAF-A----Q----AVACAEAGVTL--ISPY-----APTE---DPGVVSVTKI 120 (321)
Q Consensus 61 PaT~e-Gi~A~~~L~~~~GI~vn~TlvFS~-~----Q----a~aaa~Aga~~--iSpf-----~~~~---d~Gi~~v~~i 120 (321)
+.|++ =+++++.+.+. ||+++.+.++++ . + ...+.+.++.. ++|| ..+. .+...-..++
T Consensus 161 ~~s~~~~~~~i~~l~~~-Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~ 239 (323)
T PRK07094 161 GMSFENRIACLKDLKEL-GYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKV 239 (323)
T ss_pred CCCHHHHHHHHHHHHHc-CCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHH
Confidence 45554 46889999876 999999999986 2 2 22334445553 3444 1121 2334444555
Q ss_pred HHHHHhcCCceEEee-ccc---CCHh-HHHHHhCCCeE--EeCHHHHHH
Q psy10958 121 YNYYKKFGYKTVVMG-ASF---RNTG-EILALAGCDLM--TIGPKLLEE 162 (321)
Q Consensus 121 ~~~~~~~~~~T~vl~-AS~---r~~~-~v~~LaG~d~v--Tipp~~l~~ 162 (321)
....+..-.++.+-. +++ +... +..-.+|++.+ |++|.-..+
T Consensus 240 ~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~~~~~~~~~~ 288 (323)
T PRK07094 240 LALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMPNLTPGEYRK 288 (323)
T ss_pred HHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecCCCCchhhCc
Confidence 555555433333322 232 2222 33335899987 666655544
No 310
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=29.55 E-value=3.4e+02 Score=28.80 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=50.5
Q ss_pred cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH------HHHHHHHHHHhhCceeeeeeccC----
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE------GIQAAKVLESEYGIHCNLTLLFA---- 88 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e------Gi~A~~~L~~~~GI~vn~TlvFS---- 88 (321)
.||+|+.|.-..|.+.+.+.+++|... + +. .|-||-.+- -+.+++.|..+.||.+-+.+...
T Consensus 324 ~vs~E~~PPk~~~~~~l~~~~~~L~~~----~---~d-~i~Vtd~~~g~~r~~s~~~a~~l~~~~gi~~i~Hltc~d~n~ 395 (612)
T PRK08645 324 TVIVELDPPKGLDTDKFLEGAKALKEA----G---VD-AITLADNPLARVRISNIALASLIKRELGIEPLVHITCRDRNL 395 (612)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHhcC----C---CC-EEEcCCCCCcccccCHHHHHHHHHHHhCCCeeeEecCCCcCH
Confidence 399999999999999999999887753 1 12 233553332 36788888865588876555443
Q ss_pred ---HHHHHHHHHhcCcee
Q psy10958 89 ---FAQAVACAEAGVTLI 103 (321)
Q Consensus 89 ---~~Qa~aaa~Aga~~i 103 (321)
..+...+..+|+.-|
T Consensus 396 ~~l~~~L~~~~~~Gv~nI 413 (612)
T PRK08645 396 IGLQSHLLGLHALGIRNV 413 (612)
T ss_pred HHHHHHHHHHHHcCCceE
Confidence 233344566677533
No 311
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.52 E-value=4.4e+02 Score=25.78 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=62.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHH----HHHHHHHHH---hhCceeeeeeccCHHHHHHHHH
Q psy10958 28 LSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEG----IQAAKVLES---EYGIHCNLTLLFAFAQAVACAE 97 (321)
Q Consensus 28 la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eG----i~A~~~L~~---~~GI~vn~TlvFS~~Qa~aaa~ 97 (321)
...+.+..++.++.+.+. |. +.|+|+=. .||+- +.++++-.. ..|+++.=|+=.++.-+++|.+
T Consensus 138 ~~~~~e~l~~~a~~~~~~----Ga--~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~ 211 (333)
T TIGR03217 138 HMTPPEKLAEQAKLMESY----GA--DCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIE 211 (333)
T ss_pred cCCCHHHHHHHHHHHHhc----CC--CEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHH
Confidence 457889999999888774 33 45655522 23433 345544321 1388888999999999999999
Q ss_pred hcCcee--ecCCCCCCCchHHHHHHHHHHHhcCCceE
Q psy10958 98 AGVTLI--SPYAPTEDPGVVSVTKIYNYYKKFGYKTV 132 (321)
Q Consensus 98 Aga~~i--Spf~~~~d~Gi~~v~~i~~~~~~~~~~T~ 132 (321)
+|+++| |..+--.-.|-.....+..++++.|++|.
T Consensus 212 aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~tg 248 (333)
T TIGR03217 212 AGATRIDASLRGLGAGAGNAPLEVFVAVLDRLGWNTG 248 (333)
T ss_pred hCCCEEEeecccccccccCccHHHHHHHHHhcCCCCC
Confidence 999875 33322223444444444555666666553
No 312
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=29.00 E-value=4e+02 Score=25.23 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=41.8
Q ss_pred eeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEe
Q psy10958 83 LTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 155 (321)
Q Consensus 83 ~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTi 155 (321)
.--+.|++|+..|+++|++||.. +.-+...++++.+..+. +..+.+..=-|.+.+.+ ..|+|.+.+
T Consensus 186 gvev~s~eea~~A~~~gaDyI~l----d~~~~e~l~~~~~~~~~---~ipi~AiGGI~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 186 EVEVETLEQLKEALEAGADIIML----DNMSPEELREAVALLKG---RVLLEASGGITLENIRAYAETGVDYISV 253 (268)
T ss_pred EEEECCHHHHHHHHHcCCCEEEE----CCcCHHHHHHHHHHcCC---CCcEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 44567999999999999999853 11234556666555432 23344443346666665 479998743
No 313
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=28.62 E-value=6e+02 Score=25.33 Aligned_cols=64 Identities=8% Similarity=0.112 Sum_probs=46.3
Q ss_pred HHHHHHHHHhh---Cceeeee-eccCHHHHHHHHHhcCceeecCCC-CC-CCc--hHHHHHHHHHHHhcCCc
Q psy10958 67 IQAAKVLESEY---GIHCNLT-LLFAFAQAVACAEAGVTLISPYAP-TE-DPG--VVSVTKIYNYYKKFGYK 130 (321)
Q Consensus 67 i~A~~~L~~~~---GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~~-~~-d~G--i~~v~~i~~~~~~~~~~ 130 (321)
++.++++.+.. +|++-.. -|+|.+.|+....|||+.+..+.. .. .|. -...+.+.++++++|++
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~ 310 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFA 310 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCcc
Confidence 68888887643 5777754 699999999999999999988832 22 333 24455666777777654
No 314
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=28.46 E-value=2.3e+02 Score=26.57 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.6
Q ss_pred CCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCC
Q psy10958 16 IPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGID 52 (321)
Q Consensus 16 ~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~ 52 (321)
.|.++-+..||.=..+.+..++-|..+.+++++.|+.
T Consensus 97 ~PD~lvfDLDP~~~~~f~~v~~~A~~~r~~L~~lgL~ 133 (227)
T cd04862 97 RPDRIVFDLDPGPGVPWKAVVEAALLVRELLDELGLE 133 (227)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3678999999987789999999999999999988764
No 315
>PRK06256 biotin synthase; Validated
Probab=27.68 E-value=3.9e+02 Score=25.56 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhCceeeeeeccCHH----H----HHHHHHhcCcee-----ecC--CCCCC---CchHHHHHHHHHHHhc
Q psy10958 66 GIQAAKVLESEYGIHCNLTLLFAFA----Q----AVACAEAGVTLI-----SPY--APTED---PGVVSVTKIYNYYKKF 127 (321)
Q Consensus 66 Gi~A~~~L~~~~GI~vn~TlvFS~~----Q----a~aaa~Aga~~i-----Spf--~~~~d---~Gi~~v~~i~~~~~~~ 127 (321)
=+++++.+.+. |++++.+.++++. + +....+.+...+ .|+ ..+.+ +...-..++..+++-.
T Consensus 189 ~i~~i~~a~~~-Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~ 267 (336)
T PRK06256 189 RIDTCEMVKAA-GIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLI 267 (336)
T ss_pred HHHHHHHHHHc-CCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 36889999876 9999999999642 2 333334465433 233 12222 3345555566677776
Q ss_pred CCceEEeecccCCH----hHHHHHhCCCeEEeCHH
Q psy10958 128 GYKTVVMGASFRNT----GEILALAGCDLMTIGPK 158 (321)
Q Consensus 128 ~~~T~vl~AS~r~~----~~v~~LaG~d~vTipp~ 158 (321)
-.+..|..|+=|.. .+-..++|++.+.+..-
T Consensus 268 ~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~~ 302 (336)
T PRK06256 268 NPDKEIRIAGGREVNLRSLQPLGLGGANSVIVGNY 302 (336)
T ss_pred CCCCeeEecCchhhhchhhHHHHhccCceeeECCc
Confidence 66677766654532 13333579998866544
No 316
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=27.32 E-value=5.6e+02 Score=24.51 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=78.9
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCce-EEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERI-LIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv-~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
++..+.+++.++..+.+-||+.-+.+.+.-++-+++|-.. . +-++ +|-=|.... +..+.|....++++.+-
T Consensus 141 ~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~---~---~~~i~~iEqP~~~~--~~~~~l~~~~~~Pia~d 212 (307)
T TIGR01927 141 GMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPN---L---RGRIAFLEEPLPDA--DEMSAFSEATGTAIALD 212 (307)
T ss_pred HHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccc---c---CCCceEEeCCCCCH--HHHHHHHHhCCCCEEeC
Confidence 4556677776655588899988888886544444444320 0 0233 677676443 56666765547888766
Q ss_pred -eccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceEEe
Q psy10958 85 -LLFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVM 134 (321)
Q Consensus 85 -lvFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl 134 (321)
-+++..+.....+.|+ +++.+-. .-.-|+..++++.++-+.+|.+.-+-
T Consensus 213 Es~~~~~d~~~~~~~~~~d~i~ik~-~~~GGi~~~~~i~~~a~~~gi~~~~~ 263 (307)
T TIGR01927 213 ESLWELPQLADEYGPGWRGALVIKP-AIIGSPAKLRDLAQKAHRLGLQAVFS 263 (307)
T ss_pred CCcCChHHHHHHHhcCCCceEEECc-hhcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4789999999988876 5665531 12356888999999989888776543
No 317
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=27.31 E-value=6.2e+02 Score=26.46 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=70.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHH---------HHHHHHHHHhhCceeeeeeccC----------
Q psy10958 28 LSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEG---------IQAAKVLESEYGIHCNLTLLFA---------- 88 (321)
Q Consensus 28 la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eG---------i~A~~~L~~~~GI~vn~TlvFS---------- 88 (321)
....+++|+.-|..|-+. |+. -+=+==.+|... .+.++.+.+. .-++.+..++-
T Consensus 22 tr~~t~d~l~ia~~ld~~----G~~--siE~~GGatfd~~~rfl~Edpwerlr~lr~~-~~nt~lqmL~Rg~N~vGy~~y 94 (499)
T PRK12330 22 TRMAMEDMVGACEDIDNA----GYW--SVECWGGATFDACIRFLNEDPWERLRTFRKL-MPNSRLQMLLRGQNLLGYRHY 94 (499)
T ss_pred ccCCHHHHHHHHHHHHhc----CCC--EEEecCCcchhhhhcccCCCHHHHHHHHHHh-CCCCeEEEEEcccccCCccCc
Confidence 346899999988888774 544 333322222221 1124444443 33344444432
Q ss_pred -----HHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCce--EE--eecccCCHhHHHHH------hCCCeE
Q psy10958 89 -----FAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKT--VV--MGASFRNTGEILAL------AGCDLM 153 (321)
Q Consensus 89 -----~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T--~v--l~AS~r~~~~v~~L------aG~d~v 153 (321)
..-...++++|.+++-.|....|. .+++...+..++.|... .| ......+++++.++ +|||.|
T Consensus 95 ~ddvv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I 172 (499)
T PRK12330 95 EDEVVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSI 172 (499)
T ss_pred chhHHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 224667888999999999666664 66666667777776544 11 22334567766652 699998
Q ss_pred EeC
Q psy10958 154 TIG 156 (321)
Q Consensus 154 Tip 156 (321)
+|+
T Consensus 173 ~Ik 175 (499)
T PRK12330 173 CIK 175 (499)
T ss_pred EeC
Confidence 774
No 318
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=26.79 E-value=1.1e+02 Score=29.26 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=74.0
Q ss_pred ccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE--Ee----c----CCHH------HHHHHHHHHHhh
Q psy10958 14 NIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI--KL----A----STWE------GIQAAKVLESEY 77 (321)
Q Consensus 14 ~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I--KI----P----aT~e------Gi~A~~~L~~~~ 77 (321)
-+-+.+..+=+-|.-.+|.+.+++-|++|.++..+.+ +|+++ |+ | ..|. |++-..+..+..
T Consensus 11 ~G~~~~l~viaGPCsies~e~~~~~A~~l~~~~~~~~---~~i~~~~~~~~~KpRts~~~f~G~g~d~~L~~l~~v~~~~ 87 (270)
T PF00793_consen 11 IGKDKRLLVIAGPCSIESEEQALEYAERLKELGEKLG---DRIPLRMRAYFEKPRTSPYSFQGLGLDPGLDILSEVKEGL 87 (270)
T ss_dssp ETTTSSEEEEEEESB-S-HHHHHHHHHHHHHHHHHHT---TTEEEEEEECSC-TTSSTTST-CSTHHHHHHHHHHHHHHH
T ss_pred ecCCCceEEEEECCccCCHHHHHHHHHHHHHhhhhcC---cceEEEEEEEecCCccCCCCCCCCCCCccchhHHHHHhhh
Confidence 3344578888999999999999999999999876643 33333 22 3 3443 378888888878
Q ss_pred CceeeeeeccCHHHHHHHHHhcCcee--ecC--------------------CCCCCCchHHHHHHHHHHHhcC
Q psy10958 78 GIHCNLTLLFAFAQAVACAEAGVTLI--SPY--------------------APTEDPGVVSVTKIYNYYKKFG 128 (321)
Q Consensus 78 GI~vn~TlvFS~~Qa~aaa~Aga~~i--Spf--------------------~~~~d~Gi~~v~~i~~~~~~~~ 128 (321)
|+++ +|-+....|+..+++. ++++ ..| .+.....+..+..+.++....|
T Consensus 88 glpv-~tEv~~~~~~~~~~d~-vd~lqIgAr~~~n~~ll~~as~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G 158 (270)
T PF00793_consen 88 GLPV-ATEVLDPEQAEYVADL-VDWLQIGARLMENQDLLEAASGTGKPVGFKNGTFAAIDEWLAAAEKHLFLG 158 (270)
T ss_dssp T-EE-EEEESSGGGHHHHHTT-ESEEEE-GGGTTCHHHHHHHHCTSSEEEEEE-TTSHGGGHHHHHHHHHHTT
T ss_pred CCee-eEEecCcccHHHHHhc-CcEEEECcchhcCHHHHHHhccCCCeEEeccCCccCHHHHHHHHhhhhhhc
Confidence 9999 7999999999999887 4432 222 1223355666666666666666
No 319
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=26.66 E-value=4.7e+02 Score=23.47 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=76.4
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.++..+.+-+|+.-+.|.+..++-+++|.. .+ =.+|-=|..+..+...+.|.+..++++.+-
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~----~~----i~~iEeP~~~~d~~~~~~L~~~~~~pIa~dE 152 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEK----YG----LAWIEEPCAPDDLEGYAALRRRTGIPIAADE 152 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhh----cC----CCeEECCCCccCHHHHHHHHhhCCCCEEeCC
Confidence 345666777766567777887777887554444444433 22 236676776666666777776557887665
Q ss_pred eccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 85 LLFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
.+++..+.....+.++ +++.|= ..-.=|+...+++.++-+.+|.+.-+
T Consensus 153 s~~~~~~~~~~~~~~~~d~~~~k-~~~~GGi~~~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 153 SVTTVDDALEALELGAVDILQIK-PTRVGGLTESRRAADLAEAFGIRVMV 201 (229)
T ss_pred CCCCHHHHHHHHHcCCCCEEecC-ccccCCHHHHHHHHHHHHHcCCEEee
Confidence 4577887766666654 455442 11223788999999999999865544
No 320
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.53 E-value=4.5e+02 Score=26.10 Aligned_cols=101 Identities=11% Similarity=0.075 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhccCC-C-cEEEEecCCcCCCH----HHHHHHHHHHHHHHHHcCCCCCceEEEecC----CHH--HHHHH
Q psy10958 3 KLVILFGTEILNIIP-G-RVSTEVDARLSFDK----DASIAKAKKYIKMYEEAGIDKERILIKLAS----TWE--GIQAA 70 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~-G-~Vs~EV~p~la~d~----e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa----T~e--Gi~A~ 70 (321)
|++.++...|.+.+. . +|.+-++|.-..|. ..+.++..++.+++++.|++ -+-|-... ..+ ....+
T Consensus 195 Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~~~ 272 (361)
T cd04747 195 RFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELNLA 272 (361)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchhHH
Confidence 567788888888763 3 58888876211111 12334555565555666765 33332211 111 12333
Q ss_pred HHHHHhhCceeeeeec-------------------cCHHHHHHHHHhc-Cceeec
Q psy10958 71 KVLESEYGIHCNLTLL-------------------FAFAQAVACAEAG-VTLISP 105 (321)
Q Consensus 71 ~~L~~~~GI~vn~Tlv-------------------FS~~Qa~aaa~Ag-a~~iSp 105 (321)
+.+++..+++|-++.- .|++++..+.+.| |+.|+.
T Consensus 273 ~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 273 GWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred HHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehh
Confidence 4444333677777754 3888888888876 666653
No 321
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=26.43 E-value=2.6e+02 Score=29.07 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=46.8
Q ss_pred cCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEEe
Q psy10958 87 FAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMTI 155 (321)
Q Consensus 87 FS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vTi 155 (321)
...+.+.+..+||+++|..-..+++. ..+.++.+.+++.-.+..|+++.+-+.++...+ +|+|.|.+
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~~g~~--~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSSQGDS--IYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCc--HHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 45788999999999998876544332 222344444555434578888889888888874 89999855
No 322
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=26.12 E-value=6.6e+02 Score=24.99 Aligned_cols=117 Identities=10% Similarity=0.086 Sum_probs=77.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT- 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T- 84 (321)
++..+.+++.++ .+.+-||+.-+++.+. |.++.+.+++ ++ .+|-=|.. .+...++|.+.-++++.+-
T Consensus 201 i~~v~avRea~~-~~~l~vDaN~~w~~~~----A~~~~~~l~~-~l----~~iEeP~~--d~~~~~~L~~~~~~PIa~dE 268 (395)
T cd03323 201 IEAVKALAEAFP-GARLRLDPNGAWSLET----AIRLAKELEG-VL----AYLEDPCG--GREGMAEFRRATGLPLATNM 268 (395)
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCCcCHHH----HHHHHHhcCc-CC----CEEECCCC--CHHHHHHHHHhcCCCEEcCC
Confidence 456677777774 5888888888888765 5555444322 21 24554543 5666666665446775444
Q ss_pred eccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceEEee
Q psy10958 85 LLFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG 135 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~ 135 (321)
.+++..++..+.++|+ +++.|= ..-.-|+....++.++-+.+|.+.-+-.
T Consensus 269 s~~~~~~~~~~i~~~avdil~~d-~~~~GGit~~~kia~~A~~~gi~~~~h~ 319 (395)
T cd03323 269 IVTDFRQLGHAIQLNAVDIPLAD-HHFWGGMRGSVRVAQVCETWGLGWGMHS 319 (395)
T ss_pred cccCHHHHHHHHHcCCCcEEeec-cccccCHHHHHHHHHHHHHcCCeEEEec
Confidence 6789999999988874 566443 1223578999999999999998775543
No 323
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=26.08 E-value=2.8e+02 Score=27.25 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=36.2
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH-HHHHHHHHHHh
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE-GIQAAKVLESE 76 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e-Gi~A~~~L~~~ 76 (321)
...+.++..+. |...+=+||..+.|. .+.+..||+.+|++|.-|-+.| .+.++++|...
T Consensus 70 aL~~ia~~q~~--g~~~a~ID~e~~ld~-----------~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirs 129 (322)
T PF00154_consen 70 ALHAIAEAQKQ--GGICAFIDAEHALDP-----------EYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRS 129 (322)
T ss_dssp HHHHHHHHHHT--T-EEEEEESSS---H-----------HHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcc--cceeEEecCcccchh-----------hHHHhcCccccceEEecCCcHHHHHHHHHHHhhc
Confidence 34445554443 777888888777666 3344569999999999998864 78888888765
No 324
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.94 E-value=6.6e+02 Score=24.90 Aligned_cols=135 Identities=12% Similarity=0.071 Sum_probs=76.3
Q ss_pred CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCC-----CCceEEEe-------cCCHHHHHHHHHHHHhhCceeeeee
Q psy10958 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGID-----KERILIKL-------ASTWEGIQAAKVLESEYGIHCNLTL 85 (321)
Q Consensus 18 G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~-----~~nv~IKI-------PaT~eGi~A~~~L~~~~GI~vn~Tl 85 (321)
|.-.+|.-- -..|.....+.|+.|..+++..|+. +..+..++ |..---+..++.+... + .+-..-
T Consensus 170 Gv~~VQLR~-K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~vdlAl~~~aDGVHLgq~dl~~~~aR~llg~-~-~iIG~S 246 (347)
T PRK02615 170 GVTLVQYRD-KTADDRQRLEEAKKLKELCHRYGALFIVNDRVDIALAVDADGVHLGQEDLPLAVARQLLGP-E-KIIGRS 246 (347)
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEEeChhhcCHHHHHHhcCC-C-CEEEEe
Confidence 433455532 3446778899999999998876532 01111111 2211113444554322 2 233555
Q ss_pred ccCHHHHHHHHHhcCcee--ecC-CCC-----CCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH--HhCCCeEEe
Q psy10958 86 LFAFAQAVACAEAGVTLI--SPY-APT-----EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 155 (321)
Q Consensus 86 vFS~~Qa~aaa~Aga~~i--Spf-~~~-----~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~--LaG~d~vTi 155 (321)
+.|.+++..|.+.|++|+ +|+ .-. .-.|...++.+.+.+ +..+++-.=-+...+.+ .+|++-|.+
T Consensus 247 ~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~-----~iPv~AiGGI~~~ni~~l~~~Ga~gVAv 321 (347)
T PRK02615 247 TTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA-----PIPWFAIGGIDKSNIPEVLQAGAKRVAV 321 (347)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHcCCcEEEE
Confidence 679999999999999987 555 211 125666666654432 23344433234556655 369999977
Q ss_pred CHHHH
Q psy10958 156 GPKLL 160 (321)
Q Consensus 156 pp~~l 160 (321)
.-.++
T Consensus 322 isaI~ 326 (347)
T PRK02615 322 VRAIM 326 (347)
T ss_pred eHHHh
Confidence 77665
No 325
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=25.77 E-value=9e+02 Score=26.42 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=90.4
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHH--------------HHHHHHcCCCCCceEEEecCC-HHHHHHH
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKY--------------IKMYEEAGIDKERILIKLAST-WEGIQAA 70 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L--------------~~~~~~~gi~~~nv~IKIPaT-~eGi~A~ 70 (321)
+++++.....----||+=++|++-.-.-+.+.++++. +++++..-.+-+=|++=+..- .+-++..
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l 152 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHL 152 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHH
Confidence 3444444443233688888887655555556666652 233332222223344433333 3456666
Q ss_pred HHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCC---chHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH
Q psy10958 71 KVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDP---GVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA 146 (321)
Q Consensus 71 ~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~---Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~ 146 (321)
-.+....|..+. .-|.+.+....|.++|+.+|..-+|.-+. .+....++..++ .-+.-+++. .+++..++..
T Consensus 153 ~~~a~~lGme~L-vEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~i---p~~~~~VsESGI~~~~d~~~ 228 (695)
T PRK13802 153 LDLAHELGMTVL-VETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADL---PDDVIKVAESGVFGAVEVED 228 (695)
T ss_pred HHHHHHcCCeEE-EEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhC---CCCcEEEEcCCCCCHHHHHH
Confidence 666666699884 46899999999999999999988664332 244444444443 223333443 4899998887
Q ss_pred H--hCCCeEEeCHHH
Q psy10958 147 L--AGCDLMTIGPKL 159 (321)
Q Consensus 147 L--aG~d~vTipp~~ 159 (321)
+ +|+|.+-|...+
T Consensus 229 l~~~G~davLIGesl 243 (695)
T PRK13802 229 YARAGADAVLVGEGV 243 (695)
T ss_pred HHHCCCCEEEECHHh
Confidence 5 688988775533
No 326
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.59 E-value=6.5e+02 Score=24.73 Aligned_cols=118 Identities=12% Similarity=0.096 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEec--CCHHHHHHHHHHHHhh-CceeeeeeccCHHHHHHHHHhcCceee-cC--C
Q psy10958 34 ASIAKAKKYIKMYEEAGIDKERILIKLA--STWEGIQAAKVLESEY-GIHCNLTLLFAFAQAVACAEAGVTLIS-PY--A 107 (321)
Q Consensus 34 ~~i~~A~~L~~~~~~~gi~~~nv~IKIP--aT~eGi~A~~~L~~~~-GI~vn~TlvFS~~Qa~aaa~Aga~~iS-pf--~ 107 (321)
+..+++..|++. |+..+-|.|-+. -...-.+.++++++.+ ++.+-+--|-|.+.+..+.++|++.+- =+ +
T Consensus 97 ~~~~~~~~Lv~a----g~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G 172 (326)
T PRK05458 97 DEYDFVDQLAAE----GLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPG 172 (326)
T ss_pred HHHHHHHHHHhc----CCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCC
Confidence 445777777764 443345555332 2333456677777654 466666446699999999999998752 12 1
Q ss_pred C---------CCCC--chHHHHHHHHHHHhcCCceEEeec-ccCCHhHHHH--HhCCCeEEeCHHHH
Q psy10958 108 P---------TEDP--GVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 108 ~---------~~d~--Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~v~~--LaG~d~vTipp~~l 160 (321)
+ ...| ++..++++.+.. +..|++. .+++..+|.. ..|+|.+.+.-.++
T Consensus 173 ~~~~t~~~~g~~~~~w~l~ai~~~~~~~-----~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 173 KVCITKIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFA 234 (326)
T ss_pred cccccccccCCCCCccHHHHHHHHHHHc-----CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhc
Confidence 1 1123 455566665442 2445544 5999999997 36999998885543
No 327
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=25.26 E-value=2.1e+02 Score=27.51 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=42.1
Q ss_pred CceeeeeeccCHHHHHHHHHhcCcee--ecCCCCCCCchHHHHHHHHHHHhcCCceE
Q psy10958 78 GIHCNLTLLFAFAQAVACAEAGVTLI--SPYAPTEDPGVVSVTKIYNYYKKFGYKTV 132 (321)
Q Consensus 78 GI~vn~TlvFS~~Qa~aaa~Aga~~i--Spf~~~~d~Gi~~v~~i~~~~~~~~~~T~ 132 (321)
|+++.=|+=..+.-+++|.++||+.+ +||+.-+..|-....++..+++..|++|.
T Consensus 213 ~~H~Hnd~G~a~AN~laA~~aG~~~id~~~~g~GeRaGN~~~E~lv~~l~~~g~~t~ 269 (284)
T cd07942 213 SLHPHNDRGTGVAAAELALLAGADRVEGTLFGNGERTGNVDLVTLALNLYSQGVDPG 269 (284)
T ss_pred EEEecCCCchHHHHHHHHHHhCCCEEEeeCccCCccccchhHHHHHHHHHhcCCCCC
Confidence 77888888899999999999999876 67754444776666776666666677664
No 328
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=25.17 E-value=4.2e+02 Score=22.40 Aligned_cols=140 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHhccCCC---cEEEEecCCcCCC----HHHHHHHHHHHHHHHHHcCCCCCceEEEecC-------CHHHHHHHHH
Q psy10958 7 LFGTEILNIIPG---RVSTEVDARLSFD----KDASIAKAKKYIKMYEEAGIDKERILIKLAS-------TWEGIQAAKV 72 (321)
Q Consensus 7 ~~~~~i~~~~~G---~Vs~EV~p~la~d----~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa-------T~eGi~A~~~ 72 (321)
++.+.+.+..+| +|.+.+ -+.+ ++.+++.+++..+. |.+ -+++-.|. ..+=++-+++
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v---~~~~~~~~~~~~~~~a~~a~~~----Gad--~i~v~~~~~~~~~~~~~~~~~~~~~ 105 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVV---GFPTGLTTTEVKVAEVEEAIDL----GAD--EIDVVINIGSLKEGDWEEVLEEIAA 105 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEe---cCCCCCCcHHHHHHHHHHHHHc----CCC--EEEEeccHHHHhCCCHHHHHHHHHH
Q ss_pred HHHh--hCceeeeeec--------cCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecc-cCCH
Q psy10958 73 LESE--YGIHCNLTLL--------FAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGAS-FRNT 141 (321)
Q Consensus 73 L~~~--~GI~vn~Tlv--------FS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS-~r~~ 141 (321)
+.+. .|+++.+..+ .....+..+.+.|+..+-.+..... +......+.++.+..+.+..+++.+ +++.
T Consensus 106 i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~-~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~ 184 (201)
T cd00945 106 VVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG-GGATVEDVKLMKEAVGGRVGVKAAGGIKTL 184 (201)
T ss_pred HHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC-CCCCHHHHHHHHHhcccCCcEEEECCCCCH
Q ss_pred hHHHH--HhCCCeEEeC
Q psy10958 142 GEILA--LAGCDLMTIG 156 (321)
Q Consensus 142 ~~v~~--LaG~d~vTip 156 (321)
.++.. ..|++-+.++
T Consensus 185 ~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 185 EDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHhccceeecC
No 329
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=25.15 E-value=1.9e+02 Score=23.84 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHHH-HcCCCCCceEEEecC
Q psy10958 31 DKDASIAKAKKYIKMYE-EAGIDKERILIKLAS 62 (321)
Q Consensus 31 d~e~~i~~A~~L~~~~~-~~gi~~~nv~IKIPa 62 (321)
+.+..-+.+..|.++++ +.||+++||+|+.=.
T Consensus 70 ~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 70 APSKPKMMTPRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEc
Confidence 56788888889988764 679999999999643
No 330
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=25.12 E-value=5.6e+02 Score=25.20 Aligned_cols=96 Identities=26% Similarity=0.319 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCC-----HHHH-HHHHHHHHh----hCceeeeeeccCHHHHHHHHHhc
Q psy10958 30 FDKDASIAKAKKYIKMYEEAGIDKERILIKLAST-----WEGI-QAAKVLESE----YGIHCNLTLLFAFAQAVACAEAG 99 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT-----~eGi-~A~~~L~~~----~GI~vn~TlvFS~~Qa~aaa~Ag 99 (321)
.|.+.+++-++.+.+. |++ +|. ++-| |..+ ..++.|.+. .|+++.=|+=+++..+++|.++|
T Consensus 138 ~~~~~l~~~~~~~~~~----g~~--~i~--l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aG 209 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEA----GAD--RIN--IADTVGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAG 209 (363)
T ss_pred CCHHHHHHHHHHHHhC----CCC--EEE--EeCCCCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCC
Confidence 5777777777776654 543 444 4455 4443 233344322 26788888889999999999999
Q ss_pred Cceeec--CCCCCCCchHHHHHHHHHHHh-cCCceEE
Q psy10958 100 VTLISP--YAPTEDPGVVSVTKIYNYYKK-FGYKTVV 133 (321)
Q Consensus 100 a~~iSp--f~~~~d~Gi~~v~~i~~~~~~-~~~~T~v 133 (321)
++++.. .+.-+-.|-.....+..+++. .|++|.+
T Consensus 210 a~~vd~s~~GlGeraGN~~lE~vv~~L~~~~g~~~~i 246 (363)
T TIGR02090 210 AEQVHVTVNGIGERAGNAALEEVVMALKYLYGVKTKI 246 (363)
T ss_pred CCEEEEEeeccccccccccHHHHHHHHHHhhCCCCCc
Confidence 987633 232233555555555555554 5777643
No 331
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.05 E-value=6.3e+02 Score=24.38 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhccCC-C-cEEEEecCC----cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE-----ecC---------
Q psy10958 3 KLVILFGTEILNIIP-G-RVSTEVDAR----LSFDKDASIAKAKKYIKMYEEAGIDKERILIK-----LAS--------- 62 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~-G-~Vs~EV~p~----la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK-----IPa--------- 62 (321)
|+.+++.++|++.+. + .|.+-+++. -+.|.+++ ..+.+.+++.|++ -+-|- =|.
T Consensus 200 rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea----~~ia~~Le~~Gvd--~iev~~g~~~~~~~~~~~~~~~ 273 (338)
T cd04733 200 RLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDA----LEVVEALEEAGVD--LVELSGGTYESPAMAGAKKEST 273 (338)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHH----HHHHHHHHHcCCC--EEEecCCCCCCccccccccCCc
Confidence 567788888888774 4 588888752 24455544 4555555555553 22210 011
Q ss_pred -CHHH--HHHHHHHHHhhCceeeee-eccCHHHHHHHHHhc-Cceeec
Q psy10958 63 -TWEG--IQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAG-VTLISP 105 (321)
Q Consensus 63 -T~eG--i~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Ag-a~~iSp 105 (321)
..+| ...++++++..+|+|-+. -+.++.++..+.+.| +++++.
T Consensus 274 ~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 274 IAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 1122 355566665447888666 455899999999987 676653
No 332
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=25.04 E-value=3e+02 Score=25.28 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=66.4
Q ss_pred cEEEEecCC-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE------ecCCHHHHHHHHHHHHhh-Cceeeeeec-cCH
Q psy10958 19 RVSTEVDAR-LSFDKDASIAKAKKYIKMYEEAGIDKERILIK------LASTWEGIQAAKVLESEY-GIHCNLTLL-FAF 89 (321)
Q Consensus 19 ~Vs~EV~p~-la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IK------IPaT~eGi~A~~~L~~~~-GI~vn~Tlv-FS~ 89 (321)
++++.++|. ++.|.-..-++.+++.+. |++ .+-+- +|.+..|.+.++.|.+.. .+.+.+-+. ..+
T Consensus 4 ~~~~~i~pSi~~~d~~~l~~~~~~l~~~----~~~--~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p 77 (228)
T PTZ00170 4 PLKAIIAPSILAADFSKLADEAQDVLSG----GAD--WLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNP 77 (228)
T ss_pred CCCCEEehhHhhcCHHHHHHHHHHHHHc----CCC--EEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 344444444 456666666666666653 332 33332 478888999999998751 366666555 566
Q ss_pred HHHH-HHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCce
Q psy10958 90 AQAV-ACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKT 131 (321)
Q Consensus 90 ~Qa~-aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T 131 (321)
..++ .++++|+++++.= ...+...++++.+..+++|.++
T Consensus 78 ~~~i~~~~~~Gad~itvH---~ea~~~~~~~~l~~ik~~G~~~ 117 (228)
T PTZ00170 78 EKWVDDFAKAGASQFTFH---IEATEDDPKAVARKIREAGMKV 117 (228)
T ss_pred HHHHHHHHHcCCCEEEEe---ccCCchHHHHHHHHHHHCCCeE
Confidence 6655 6788999999873 2223344677888888888554
No 333
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=24.91 E-value=6.9e+02 Score=24.80 Aligned_cols=155 Identities=13% Similarity=0.134 Sum_probs=91.3
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHH---------------HHHHHHcCCCCCceEEEecC-CHHHHHH
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKY---------------IKMYEEAGIDKERILIKLAS-TWEGIQA 69 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L---------------~~~~~~~gi~~~nv~IKIPa-T~eGi~A 69 (321)
+++++...+.---.+|+=+++.+-.-.-+-++++++. +++|+..-.+-+=|+.=+.. +.+-++.
T Consensus 142 ~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~ 221 (338)
T PLN02460 142 VEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKY 221 (338)
T ss_pred HHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHH
Confidence 3445555444334788888887555555555555542 33333322222222222222 2334666
Q ss_pred HHHHHHhhCceeeeeeccCHHHHHHHHHh-cCceeecCCCCCCC---chHHHHHHHHHHH--hc-CCceEEeec-ccCCH
Q psy10958 70 AKVLESEYGIHCNLTLLFAFAQAVACAEA-GVTLISPYAPTEDP---GVVSVTKIYNYYK--KF-GYKTVVMGA-SFRNT 141 (321)
Q Consensus 70 ~~~L~~~~GI~vn~TlvFS~~Qa~aaa~A-ga~~iSpf~~~~d~---Gi~~v~~i~~~~~--~~-~~~T~vl~A-S~r~~ 141 (321)
.-++....|..+ +.-|.+.+....|..+ |+.+|..-+|.-+. -+....++...++ .. .-+..+++. .+++.
T Consensus 222 l~~~A~~LGme~-LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~ 300 (338)
T PLN02460 222 MLKICKSLGMAA-LIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTP 300 (338)
T ss_pred HHHHHHHcCCeE-EEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCH
Confidence 666665569988 4578999999999998 99999998764332 2334444433111 11 112334444 49999
Q ss_pred hHHHHH--hCCCeEEeCHHHHH
Q psy10958 142 GEILAL--AGCDLMTIGPKLLE 161 (321)
Q Consensus 142 ~~v~~L--aG~d~vTipp~~l~ 161 (321)
.++..+ +|+|.+-|...+++
T Consensus 301 ~Dv~~l~~~GadAvLVGEsLMr 322 (338)
T PLN02460 301 DDVAYVQNAGVKAVLVGESLVK 322 (338)
T ss_pred HHHHHHHHCCCCEEEECHHHhC
Confidence 999875 79999999887654
No 334
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.66 E-value=2.6e+02 Score=27.15 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=58.9
Q ss_pred CceEEEecCCH-HH--HHHHHHHHHhhC--ceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcC
Q psy10958 54 ERILIKLASTW-EG--IQAAKVLESEYG--IHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFG 128 (321)
Q Consensus 54 ~nv~IKIPaT~-eG--i~A~~~L~~~~G--I~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~ 128 (321)
+-||||=---+ .| .+|++.+++..+ .++- --+=|++|+..|+++|+++|- .++-....++++..+.+.
T Consensus 168 D~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIe-VEv~tleea~~a~~agaDiIm----LDnmspe~l~~av~~~~~-- 240 (290)
T PRK06559 168 DAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVE-VEVESLAAAEEAAAAGADIIM----LDNMSLEQIEQAITLIAG-- 240 (290)
T ss_pred ceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEE-EECCCHHHHHHHHHcCCCEEE----ECCCCHHHHHHHHHHhcC--
Confidence 34777722111 12 355666664422 2232 234799999999999998773 345556777777776653
Q ss_pred CceEEeecccCCHhHHHH--HhCCCeEEeCH
Q psy10958 129 YKTVVMGASFRNTGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 129 ~~T~vl~AS~r~~~~v~~--LaG~d~vTipp 157 (321)
+..+-++.=-|.+.+.+ ..|+|.|.++.
T Consensus 241 -~~~leaSGGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 241 -RSRIECSGNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred -ceEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 44555555567777776 46899886654
No 335
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=24.60 E-value=6.4e+02 Score=24.31 Aligned_cols=40 Identities=18% Similarity=0.034 Sum_probs=29.9
Q ss_pred HHHHHHHHHhh--Cceeee-eeccCHHHHHHHHHhcCceeecC
Q psy10958 67 IQAAKVLESEY--GIHCNL-TLLFAFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 67 i~A~~~L~~~~--GI~vn~-TlvFS~~Qa~aaa~Aga~~iSpf 106 (321)
++.++++.+.. +|++-+ ..|+|.+++.....+||+.+...
T Consensus 267 l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 267 TEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 66777776543 466664 46899999999999999877665
No 336
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=24.50 E-value=2.1e+02 Score=23.14 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHHH-cCCCCCceEEEecC
Q psy10958 30 FDKDASIAKAKKYIKMYEE-AGIDKERILIKLAS 62 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~-~gi~~~nv~IKIPa 62 (321)
.+.+..-+-+++|.+.+++ .||+++||+|.+=-
T Consensus 69 ~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 69 ISRSNNSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 5778888888888887754 79999999998743
No 337
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=24.18 E-value=7.2e+02 Score=24.77 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=85.8
Q ss_pred HHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH--HHHHHHHHHHhh-Cceeeee
Q psy10958 8 FGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE--GIQAAKVLESEY-GIHCNLT 84 (321)
Q Consensus 8 ~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e--Gi~A~~~L~~~~-GI~vn~T 84 (321)
|.+..-+-..+++++-|. ..+...+.+..|.+. +...+-|+|-+.--.. =+..++.+++.+ +..+-+-
T Consensus 86 ~v~~~~~~~~~~~~vsvG-----~~~~d~er~~~L~~a----~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaG 156 (343)
T TIGR01305 86 FATNSSPDCLQNVAVSSG-----SSDNDLEKMTSILEA----VPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAG 156 (343)
T ss_pred HHHhhcccccceEEEEec-----cCHHHHHHHHHHHhc----CCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEe
Confidence 333333333467777552 334556777777764 2234578888764432 377788888754 5666555
Q ss_pred eccCHHHHHHHHHhcCcee--e--cC----CCCCC-CchHHHHHHHHHHHhc-CCceEEee-cccCCHhHHHH-H-hCCC
Q psy10958 85 LLFAFAQAVACAEAGVTLI--S--PY----APTED-PGVVSVTKIYNYYKKF-GYKTVVMG-ASFRNTGEILA-L-AGCD 151 (321)
Q Consensus 85 lvFS~~Qa~aaa~Aga~~i--S--pf----~~~~d-~Gi~~v~~i~~~~~~~-~~~T~vl~-AS~r~~~~v~~-L-aG~d 151 (321)
=|-+.+++..+.+|||+.+ + |= .|.-+ -|+..+..+++.-+.. ++...|++ -.+|+..+|.. | +|+|
T Consensus 157 NV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd 236 (343)
T TIGR01305 157 NVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGAD 236 (343)
T ss_pred cccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCC
Confidence 5999999999999999854 2 22 23222 3333344444333332 33555555 46999999887 4 7999
Q ss_pred eEEeC
Q psy10958 152 LMTIG 156 (321)
Q Consensus 152 ~vTip 156 (321)
.+-+.
T Consensus 237 ~VMlG 241 (343)
T TIGR01305 237 FVMLG 241 (343)
T ss_pred EEEEC
Confidence 99888
No 338
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=24.00 E-value=3.5e+02 Score=25.40 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEecC----CH----HHHHHHHHHHHhhCceeeeee
Q psy10958 31 DKDASIAKAKKYIKMYEEAGIDKERILIKLAS----TW----EGIQAAKVLESEYGIHCNLTL 85 (321)
Q Consensus 31 d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPa----T~----eGi~A~~~L~~~~GI~vn~Tl 85 (321)
-.+++++..+++++...+.||+++++++=-.. |. +=++.++.|... |.++.+-+
T Consensus 142 ~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~-~~p~l~G~ 203 (257)
T TIGR01496 142 VVEEVLRFLEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVAL-GYPLLVGA 203 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhC-CCcEEEEe
Confidence 36778888999988889999998898876422 22 225677777754 77776544
No 339
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=23.93 E-value=2.6e+02 Score=28.27 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHHHHHhccC---C-CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--------------HHH
Q psy10958 6 ILFGTEILNII---P-GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--------------EGI 67 (321)
Q Consensus 6 v~~~~~i~~~~---~-G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--------------eGi 67 (321)
.++...+.+.. + -.+++|++|..-. ++ ..+.+++.|++ +|.|-|=+.. .-+
T Consensus 122 ~~ll~~i~~~~~~~~~~eitie~np~~l~--~e-------~l~~lk~~G~~--risiGvqS~~~~~l~~l~r~~~~~~~~ 190 (455)
T TIGR00538 122 SRLMKLIRENFPFNADAEISIEIDPRYIT--KD-------VIDALRDEGFN--RLSFGVQDFNKEVQQAVNRIQPEEMIF 190 (455)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEeccCcCC--HH-------HHHHHHHcCCC--EEEEcCCCCCHHHHHHhCCCCCHHHHH
Confidence 34444444432 2 3699999996432 22 33333444554 6666554433 246
Q ss_pred HHHHHHHHhhCce-eeeeeccCH-HHH--------HHHHHhcCceeecC
Q psy10958 68 QAAKVLESEYGIH-CNLTLLFAF-AQA--------VACAEAGVTLISPY 106 (321)
Q Consensus 68 ~A~~~L~~~~GI~-vn~TlvFS~-~Qa--------~aaa~Aga~~iSpf 106 (321)
+|++.|.+. |+. +|+.++|++ .|- ..+.+.|+..++.|
T Consensus 191 ~ai~~l~~~-G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y 238 (455)
T TIGR00538 191 ELMNHAREA-GFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVF 238 (455)
T ss_pred HHHHHHHhc-CCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 888889876 995 899999982 232 23444577777777
No 340
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=23.91 E-value=5.3e+02 Score=24.61 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=56.8
Q ss_pred HHHHHHHhhC-ceeeeeec--cCHHHHHHHHHhcCceeecCCC--CCCCchHHHHHHHHHHHhcCCceE-----------
Q psy10958 69 AAKVLESEYG-IHCNLTLL--FAFAQAVACAEAGVTLISPYAP--TEDPGVVSVTKIYNYYKKFGYKTV----------- 132 (321)
Q Consensus 69 A~~~L~~~~G-I~vn~Tlv--FS~~Qa~aaa~Aga~~iSpf~~--~~d~Gi~~v~~i~~~~~~~~~~T~----------- 132 (321)
.++.+..+.+ ++|-+-+- .+++....|.++|.+.+-.=.. ..+.-+...+++.++.+.+|....
T Consensus 64 ~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed 143 (282)
T TIGR01859 64 MVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIED 143 (282)
T ss_pred HHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccc
Confidence 3344444435 66655543 3588999999999766543311 112357778888888888875432
Q ss_pred -Eee--cccCCHhHHHH---HhCCCeEEeC
Q psy10958 133 -VMG--ASFRNTGEILA---LAGCDLMTIG 156 (321)
Q Consensus 133 -vl~--AS~r~~~~v~~---LaG~d~vTip 156 (321)
+.+ .|+.+++++.+ ..|+|++.++
T Consensus 144 ~~~g~~~~~t~~eea~~f~~~tgvD~Lavs 173 (282)
T TIGR01859 144 GVDEKEAELADPDEAEQFVKETGVDYLAAA 173 (282)
T ss_pred cccccccccCCHHHHHHHHHHHCcCEEeec
Confidence 233 56788888776 3699998765
No 341
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.50 E-value=6.3e+02 Score=23.80 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=80.1
Q ss_pred HHHHHHHh-ccCCCcEEE--EecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceee
Q psy10958 6 ILFGTEIL-NIIPGRVST--EVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCN 82 (321)
Q Consensus 6 v~~~~~i~-~~~~G~Vs~--EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn 82 (321)
.++.++++ +..+-++-+ -.||-+.+..+.. .+.+.+.|+++ =++.-+|. .+.-...+.+.+ +|+..-
T Consensus 77 ~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f-------~~~~~~aGvdG-viipDLp~-ee~~~~~~~~~~-~gl~~I 146 (258)
T PRK13111 77 FELVREIREKDPTIPIVLMTYYNPIFQYGVERF-------AADAAEAGVDG-LIIPDLPP-EEAEELRAAAKK-HGLDLI 146 (258)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHhhcCHHHH-------HHHHHHcCCcE-EEECCCCH-HHHHHHHHHHHH-cCCcEE
Confidence 45566666 322223323 3355455555544 44445556652 33334553 233344455554 487654
Q ss_pred e--eeccCHHHHHHHHHhcC---ceeecCCCCCC-Cc-hHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH-hCCCeEE
Q psy10958 83 L--TLLFAFAQAVACAEAGV---TLISPYAPTED-PG-VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL-AGCDLMT 154 (321)
Q Consensus 83 ~--TlvFS~~Qa~aaa~Aga---~~iSpf~~~~d-~G-i~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L-aG~d~vT 154 (321)
. |--.+.+.....++..- +|+|-.+.-+. .+ -..+.+..+.++++.-...+++..+++.+++.++ .++|.+-
T Consensus 147 ~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGvi 226 (258)
T PRK13111 147 FLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVI 226 (258)
T ss_pred EEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEE
Confidence 3 33333444444444432 34455521111 11 1234455555666544456778889999999984 4599999
Q ss_pred eCHHHHHHHhc
Q psy10958 155 IGPKLLEELEN 165 (321)
Q Consensus 155 ipp~~l~~l~~ 165 (321)
+...+.+.+.+
T Consensus 227 VGSaiv~~~~~ 237 (258)
T PRK13111 227 VGSALVKIIEE 237 (258)
T ss_pred EcHHHHHHHHh
Confidence 99999888754
No 342
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=23.43 E-value=6.6e+02 Score=24.11 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=75.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCce-EEEecCCHHHHHHHHHHHHhhCceeeee
Q psy10958 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERI-LIKLASTWEGIQAAKVLESEYGIHCNLT 84 (321)
Q Consensus 6 v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv-~IKIPaT~eGi~A~~~L~~~~GI~vn~T 84 (321)
++..+.+++.+...+.+-+|+.-+.+.+..++-++.|..+ .+-++ +|-=|..+..+...+.|.+..++++.+-
T Consensus 150 ~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l------~~~~i~~iEqP~~~~~~~~~~~l~~~~~~Pia~D 223 (320)
T PRK02714 150 LKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRR------LSGKIEFIEQPLPPDQFDEMLQLSQDYQTPIALD 223 (320)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhc------cCCCccEEECCCCcccHHHHHHHHHhCCCCEEEC
Confidence 4566777777765677888887778876555544444331 01254 7887887666777777876557888766
Q ss_pred -eccCHHHHHHHHHhcC-ceeecC-CCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 85 -LLFAFAQAVACAEAGV-TLISPY-APTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 85 -lvFS~~Qa~aaa~Aga-~~iSpf-~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
.++++.++..+.+.|+ +++.+- .+.+ |+. .+.++.+.+|.++-+
T Consensus 224 Es~~~~~d~~~~~~~~a~d~v~ik~~k~G--Gi~---~~~~~a~~~gi~~~~ 270 (320)
T PRK02714 224 ESVANLAQLQQCYQQGWRGIFVIKPAIAG--SPS---RLRQFCQQHPLDAVF 270 (320)
T ss_pred CccCCHHHHHHHHHcCCCCEEEEcchhcC--CHH---HHHHHHHHhCCCEEE
Confidence 5689999999888864 566654 2222 443 344556666766654
No 343
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.42 E-value=2.5e+02 Score=28.56 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=47.5
Q ss_pred cCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEE
Q psy10958 87 FAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMT 154 (321)
Q Consensus 87 FS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vT 154 (321)
.+.+.+.+.++||+++|..-..+.++ ..+.++.+.+++.-.+..++++-+-+.+....+ +|+|.|-
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g~~--~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHGHS--TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCC--hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEE
Confidence 35578899999999999876444332 345555556666545677888888888888774 7999874
No 344
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.33 E-value=4.4e+02 Score=25.79 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhccCC-----C-cEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe----------cC-CHH
Q psy10958 3 KLVILFGTEILNIIP-----G-RVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL----------AS-TWE 65 (321)
Q Consensus 3 ~~~v~~~~~i~~~~~-----G-~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI----------Pa-T~e 65 (321)
|++.++...|.+.++ . +|.+-+++.-..+---+.++...+...+++.|++ -+-|-. |. .+.
T Consensus 195 r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~ 272 (353)
T cd04735 195 RFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQT 272 (353)
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHH
Confidence 567777788877653 2 5777777631101001234445555555555653 333321 11 122
Q ss_pred HHHHHHHHHHhhCceeeee-eccCHHHHHHHHHhcCceeecC
Q psy10958 66 GIQAAKVLESEYGIHCNLT-LLFAFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 66 Gi~A~~~L~~~~GI~vn~T-lvFS~~Qa~aaa~Aga~~iSpf 106 (321)
-++.+++.... +++|-++ -+++++++..+.+.|++.++.-
T Consensus 273 ~~~~ik~~~~~-~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~g 313 (353)
T cd04735 273 IMELVKERIAG-RLPLIAVGSINTPDDALEALETGADLVAIG 313 (353)
T ss_pred HHHHHHHHhCC-CCCEEEECCCCCHHHHHHHHHcCCChHHHh
Confidence 23334443322 6777777 4568999999998888777654
No 345
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=23.23 E-value=3.1e+02 Score=26.35 Aligned_cols=87 Identities=25% Similarity=0.327 Sum_probs=52.9
Q ss_pred HHHHHHHHHhccCCCcEEEEecCCcCCC--HHHHHHHHHHHHHHHHHcCCCCCceEE---------EecCCHHHHHHHHH
Q psy10958 4 LVILFGTEILNIIPGRVSTEVDARLSFD--KDASIAKAKKYIKMYEEAGIDKERILI---------KLASTWEGIQAAKV 72 (321)
Q Consensus 4 ~~v~~~~~i~~~~~G~Vs~EV~p~la~d--~e~~i~~A~~L~~~~~~~gi~~~nv~I---------KIPaT~eGi~A~~~ 72 (321)
++.++.+.+.+..+.+||+-+ |+..| .+.+++-++.|.+ .|++ .+.| +.|+-|+-|..+++
T Consensus 109 ~~~~iv~~~~~~~~~pvsvKi--R~g~~~~~~~~~~~~~~l~~----~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~ 180 (309)
T PF01207_consen 109 LLAEIVKAVRKAVPIPVSVKI--RLGWDDSPEETIEFARILED----AGVS--AITVHGRTRKQRYKGPADWEAIAEIKE 180 (309)
T ss_dssp HHHHHHHHHHHH-SSEEEEEE--ESECT--CHHHHHHHHHHHH----TT----EEEEECS-TTCCCTS---HHHHHHCHH
T ss_pred HhhHHHHhhhcccccceEEec--ccccccchhHHHHHHHHhhh----cccc--eEEEecCchhhcCCcccchHHHHHHhh
Confidence 567788888888888999998 45555 6667766665554 4654 4444 23888886655544
Q ss_pred HHHhhCceeeee-eccCHHHHHHHHHh-cCc
Q psy10958 73 LESEYGIHCNLT-LLFAFAQAVACAEA-GVT 101 (321)
Q Consensus 73 L~~~~GI~vn~T-lvFS~~Qa~aaa~A-ga~ 101 (321)
.. .|++-+- -|+|..++..+.+- |++
T Consensus 181 ~~---~ipvi~NGdI~s~~d~~~~~~~tg~d 208 (309)
T PF01207_consen 181 AL---PIPVIANGDIFSPEDAERMLEQTGAD 208 (309)
T ss_dssp C----TSEEEEESS--SHHHHHHHCCCH-SS
T ss_pred cc---cceeEEcCccCCHHHHHHHHHhcCCc
Confidence 43 4666555 68999999998886 665
No 346
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=22.48 E-value=6.4e+02 Score=23.52 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEecCCH----HHHHHHHHHHHhh-Cceeee---eeccCHHHHHHHHHhcCceeecCC
Q psy10958 36 IAKAKKYIKMYEEAGIDKERILIKLASTW----EGIQAAKVLESEY-GIHCNL---TLLFAFAQAVACAEAGVTLISPYA 107 (321)
Q Consensus 36 i~~A~~L~~~~~~~gi~~~nv~IKIPaT~----eGi~A~~~L~~~~-GI~vn~---TlvFS~~Qa~aaa~Aga~~iSpf~ 107 (321)
+++|.++.+.. .....+|-+ .|+ +|++|++.|.+.+ .-.+-+ |+=-+---+.+|+++||+++..-+
T Consensus 15 l~~Ai~~a~~v-----~~~~diiEv-GTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g 88 (217)
T COG0269 15 LEEAIEIAEEV-----ADYVDIIEV-GTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLG 88 (217)
T ss_pred HHHHHHHHHHh-----hhcceEEEe-CcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEe
Confidence 45555555542 223445554 555 8999999998763 111111 233345567889999999887764
Q ss_pred CCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHH---HhCCCeE
Q psy10958 108 PTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA---LAGCDLM 153 (321)
Q Consensus 108 ~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~---LaG~d~v 153 (321)
... ...++++++.-+++|..+.+==-+.+++.+... -.|+|.+
T Consensus 89 ~A~---~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~ 134 (217)
T COG0269 89 AAD---DATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQV 134 (217)
T ss_pred cCC---HHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEE
Confidence 433 456666666677777666555556677665554 3788876
No 347
>PLN02826 dihydroorotate dehydrogenase
Probab=22.43 E-value=2.3e+02 Score=28.78 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhh--Cceee-eeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHH----HHHHHHhcCC
Q psy10958 66 GIQAAKVLESEY--GIHCN-LTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTK----IYNYYKKFGY 129 (321)
Q Consensus 66 Gi~A~~~L~~~~--GI~vn-~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~----i~~~~~~~~~ 129 (321)
.++.++++.+.. .+++- +..|+|-+.++....|||+.+..|...-..|...+++ +.++++++|+
T Consensus 327 sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~~l~~~G~ 397 (409)
T PLN02826 327 STEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAELAACLERDGF 397 (409)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 477788887643 25554 4589999999999999999999994332334444444 4444555544
No 348
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=22.22 E-value=1.7e+02 Score=28.75 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=36.3
Q ss_pred eeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCC--ceEEee
Q psy10958 83 LTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGY--KTVVMG 135 (321)
Q Consensus 83 ~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~--~T~vl~ 135 (321)
.|+-.-..||+.-|+|||++|+|=+-+ +| .+..|.+.++..|+ ++-||.
T Consensus 138 ~Tl~~L~k~Avs~A~AGADiVAPSdMM--DG--rV~aIR~aLD~~G~~~~v~ImS 188 (320)
T cd04824 138 ASVKRLAEVALAYAKAGAHIVAPSDMM--DG--RVRAIKQALIQAGLGNKVSVMS 188 (320)
T ss_pred HHHHHHHHHHHHHHHhCCCEEeccccc--cc--HHHHHHHHHHHCCCccCCeeee
Confidence 466666889999999999999996432 22 34556667888888 677776
No 349
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=22.05 E-value=7.8e+02 Score=24.38 Aligned_cols=135 Identities=21% Similarity=0.223 Sum_probs=75.1
Q ss_pred CcEEEEecCCcC--CCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHHH-HHHHHHHHh-----hCceeeeeec
Q psy10958 18 GRVSTEVDARLS--FDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEGI-QAAKVLESE-----YGIHCNLTLL 86 (321)
Q Consensus 18 G~Vs~EV~p~la--~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eGi-~A~~~L~~~-----~GI~vn~Tlv 86 (321)
|++|.......+ .|.+..++-++++.+. |++ +|.|+=. ++|..+ .-++.|.+. .++++.-|.=
T Consensus 180 ~~is~~fg~p~~~r~~~~~l~~~~~~~~~~----Gad--~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~G 253 (347)
T PLN02746 180 GYVSCVVGCPIEGPVPPSKVAYVAKELYDM----GCY--EISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYG 253 (347)
T ss_pred EEEEeeecCCccCCCCHHHHHHHHHHHHHc----CCC--EEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 445555432112 3677777777777764 554 5555421 233332 222333221 3678888888
Q ss_pred cCHHHHHHHHHhcCceee---------cCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhH-HHHHhCCCeEEeC
Q psy10958 87 FAFAQAVACAEAGVTLIS---------PYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE-ILALAGCDLMTIG 156 (321)
Q Consensus 87 FS~~Qa~aaa~Aga~~iS---------pf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~-v~~LaG~d~vTip 156 (321)
+.+.-+++|.+||++++. ||.. +-.|-.....+..+++..|++|.+--..+....+ +.+..|. .+|
T Consensus 254 lA~AN~lAA~~aGa~~vd~sv~GlGecPfa~-graGN~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~---~~~ 329 (347)
T PLN02746 254 QALANILVSLQMGISTVDSSVAGLGGCPYAK-GASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGR---PSG 329 (347)
T ss_pred hHHHHHHHHHHhCCCEEEEecccccCCCCCC-CCCCChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCC---CCh
Confidence 999999999999998762 3311 1245455555555667778877543333333222 3334554 355
Q ss_pred HHHHHH
Q psy10958 157 PKLLEE 162 (321)
Q Consensus 157 p~~l~~ 162 (321)
...+..
T Consensus 330 ~~~~~~ 335 (347)
T PLN02746 330 SKTAVA 335 (347)
T ss_pred HHHHHH
Confidence 555554
No 350
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=22.00 E-value=3.5e+02 Score=26.10 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhCceeeeeec--cCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHh
Q psy10958 65 EGIQAAKVLESEYGIHCNLTLL--FAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTG 142 (321)
Q Consensus 65 eGi~A~~~L~~~~GI~vn~Tlv--FS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~ 142 (321)
+-|+.++++... -+.+|+... +-.+|...+.+.|+.+|+... +.| ....+.++.+|. ++++ -..+.+
T Consensus 52 ~~i~~~~~~t~~-pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~--g~p-----~~~i~~lk~~g~--~v~~-~v~s~~ 120 (307)
T TIGR03151 52 KEIRKVKELTDK-PFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA--GNP-----GKYIPRLKENGV--KVIP-VVASVA 120 (307)
T ss_pred HHHHHHHHhcCC-CcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC--CCc-----HHHHHHHHHcCC--EEEE-EcCCHH
Confidence 345666665533 344554322 113455667888999887531 222 246667777764 4442 345555
Q ss_pred HHHH--HhCCCeEEe
Q psy10958 143 EILA--LAGCDLMTI 155 (321)
Q Consensus 143 ~v~~--LaG~d~vTi 155 (321)
+... -+|+|.|++
T Consensus 121 ~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 121 LAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHHHcCCCEEEE
Confidence 5544 479999866
No 351
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=22.00 E-value=5.1e+02 Score=24.79 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=49.9
Q ss_pred HHHHHHhccCC-CcEEEEecCCcCC--CHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeee
Q psy10958 7 LFGTEILNIIP-GRVSTEVDARLSF--DKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNL 83 (321)
Q Consensus 7 ~~~~~i~~~~~-G~Vs~EV~p~la~--d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~ 83 (321)
..++.+++..+ -+|..-. |..++ +.+.-++.|.+|.+- .|.+ .||+=.-.+=.+.++.|.+. ||+|..
T Consensus 66 ~h~~aV~Rga~~~~vv~Dm-Pf~sy~~s~e~av~nA~rl~ke---~Gad----aVKlEGg~~~~~~i~~l~~~-GIPV~g 136 (261)
T PF02548_consen 66 YHTKAVRRGAPNAFVVADM-PFGSYQASPEQAVRNAGRLMKE---AGAD----AVKLEGGAEIAETIKALVDA-GIPVMG 136 (261)
T ss_dssp HHHHHHHHH-TSSEEEEE---TTSSTSSHHHHHHHHHHHHHT---TT-S----EEEEEBSGGGHHHHHHHHHT-T--EEE
T ss_pred HHHHHHHhcCCCceEEecC-CcccccCCHHHHHHHHHHHHHh---cCCC----EEEeccchhHHHHHHHHHHC-CCcEEE
Confidence 34555666654 3444444 66776 888888888888872 3444 68888877778889999887 999987
Q ss_pred eeccCHHHHH
Q psy10958 84 TLLFAFAQAV 93 (321)
Q Consensus 84 TlvFS~~Qa~ 93 (321)
-+=+++..+.
T Consensus 137 HiGLtPQ~~~ 146 (261)
T PF02548_consen 137 HIGLTPQSVH 146 (261)
T ss_dssp EEES-GGGHH
T ss_pred EecCchhhee
Confidence 7766665544
No 352
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=21.93 E-value=6.6e+02 Score=23.52 Aligned_cols=88 Identities=22% Similarity=0.211 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEec-----CCHHHHH----HHHHHHH--hhCceeeeeeccCHHHHHHHHHh
Q psy10958 30 FDKDASIAKAKKYIKMYEEAGIDKERILIKLA-----STWEGIQ----AAKVLES--EYGIHCNLTLLFAFAQAVACAEA 98 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP-----aT~eGi~----A~~~L~~--~~GI~vn~TlvFS~~Qa~aaa~A 98 (321)
.+.+..++-++++.+. |++ + |-|+ +||+.+. ++++-.. ..|+++.=|+=.++.-+++|.++
T Consensus 148 ~~~~~~~~~~~~~~~~----g~~--~--i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~a 219 (273)
T cd07941 148 ANPEYALATLKAAAEA----GAD--W--LVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEA 219 (273)
T ss_pred CCHHHHHHHHHHHHhC----CCC--E--EEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHc
Confidence 3566666777766654 443 4 4466 6776543 3333211 13778888888999999999999
Q ss_pred cCceee--cCCCCCCCchHHHHHHHHHHH
Q psy10958 99 GVTLIS--PYAPTEDPGVVSVTKIYNYYK 125 (321)
Q Consensus 99 ga~~iS--pf~~~~d~Gi~~v~~i~~~~~ 125 (321)
|++++. ..+.-+-.|-.....+...++
T Consensus 220 Ga~~id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 220 GATQVQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred CCCEEEEeccccccccccccHHHHHHHHH
Confidence 998764 333223344334444444443
No 353
>KOG4201|consensus
Probab=21.86 E-value=1.2e+02 Score=28.52 Aligned_cols=64 Identities=23% Similarity=0.237 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhcCceeecCC--CCCCCchHHHHHHHHHHHhcCCceE---Eeecc-cCCHhHHHH--HhCCCeEE
Q psy10958 88 AFAQAVACAEAGVTLISPYA--PTEDPGVVSVTKIYNYYKKFGYKTV---VMGAS-FRNTGEILA--LAGCDLMT 154 (321)
Q Consensus 88 S~~Qa~aaa~Aga~~iSpf~--~~~d~Gi~~v~~i~~~~~~~~~~T~---vl~AS-~r~~~~v~~--LaG~d~vT 154 (321)
..+||++-++.||+.+|... ...+-+......+.+. .|.++- ++--- +-++.||.. +.|+|.|-
T Consensus 93 ~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~---~~~k~p~~~lL~KeFivd~~QI~~aR~~GADaVL 164 (289)
T KOG4201|consen 93 AAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKI---AGVKCPPKCLLRKEFIVDPYQIYEARLKGADAVL 164 (289)
T ss_pred HHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHH---hcCcCChHhHhHHHHccCHHHHHHHHhcCCceee
Confidence 36899999999999999982 1222333333333222 122211 11111 357788886 89999874
No 354
>PLN02281 chlorophyllide a oxygenase
Probab=21.79 E-value=2.3e+02 Score=29.91 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHhHHHhhcCCCcceeccc
Q psy10958 286 NIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVD 319 (321)
Q Consensus 286 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (321)
=-+.+++-++|||.--=-.-=-++.|||+|||.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (536)
T PLN02281 146 ISEARVSTALDKLAHMEELVNDRLLPGRVVTELD 179 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhccCCCcccccc
Confidence 3467899999998543322234678999999875
No 355
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=21.68 E-value=1.1e+02 Score=33.41 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=47.8
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--HHHHHHHHHHHh
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--EGIQAAKVLESE 76 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--eGi~A~~~L~~~ 76 (321)
.|.+|-++--++...+++|++-|.+..+++++.|.+ |++|-+-++. ..+.|-|.|..+
T Consensus 232 ~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~--diviS~KsSn~~~~V~AyR~La~~ 291 (733)
T PLN02925 232 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYH--NFVFSMKASNPVVMVQAYRLLVAE 291 (733)
T ss_pred CcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCC--cEEEEEEcCChHHHHHHHHHHHHH
Confidence 377777776677789999999999999999999985 8888777765 678888888765
No 356
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=21.52 E-value=2.9e+02 Score=26.28 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=49.8
Q ss_pred HHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEE---------EecCCHHHHHHHHHHHHhh
Q psy10958 7 LFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILI---------KLASTWEGIQAAKVLESEY 77 (321)
Q Consensus 7 ~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~I---------KIPaT~eGi~A~~~L~~~~ 77 (321)
+..+++.+..+++|.+-.- -..+.|+++.+. |++ -|.| .-|.|++-+..+++....
T Consensus 162 ~~i~~l~~~~~~pvivK~v--------~s~~~a~~a~~~----G~d--~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~- 226 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGI--------LTPEDALRAVDA----GAD--GIVVSNHGGRQLDGAPATIDALPEIVAAVGG- 226 (299)
T ss_pred HHHHHHHHhcCCCEEEeec--------CCHHHHHHHHHC----CCC--EEEEcCCCCCCCCCCcCHHHHHHHHHHHhcC-
Confidence 4556666666677776621 112445555543 433 2333 235566666555443322
Q ss_pred Cceeeee-eccCHHHHHHHHHhcCcee---ecC
Q psy10958 78 GIHCNLT-LLFAFAQAVACAEAGVTLI---SPY 106 (321)
Q Consensus 78 GI~vn~T-lvFS~~Qa~aaa~Aga~~i---Spf 106 (321)
.|++.+. -|++...+..|...||+.+ .||
T Consensus 227 ~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 227 RIEVLLDGGIRRGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 4777776 7888999999998998744 555
No 357
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.47 E-value=3e+02 Score=25.37 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCceeecC--CCCCCCchHHHHHHHHHHHhcCC------------------------------------c
Q psy10958 89 FAQAVACAEAGVTLISPY--APTEDPGVVSVTKIYNYYKKFGY------------------------------------K 130 (321)
Q Consensus 89 ~~Qa~aaa~Aga~~iSpf--~~~~d~Gi~~v~~i~~~~~~~~~------------------------------------~ 130 (321)
..+...+.+.|++.+..= +.......+.++++....++++. +
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~ 103 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLGQDDMPLAEARELLGP 103 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcCCcccchHHHHHhcCC
Q ss_pred eEEeecccCCHhHHHH--HhCCCeEEeCH
Q psy10958 131 TVVMGASFRNTGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 131 T~vl~AS~r~~~~v~~--LaG~d~vTipp 157 (321)
-.+++.|..+.+++.+ ..|+|++.+.|
T Consensus 104 ~~iIG~S~h~~eea~~A~~~g~DYv~~Gp 132 (211)
T COG0352 104 GLIIGLSTHDLEEALEAEELGADYVGLGP 132 (211)
T ss_pred CCEEEeecCCHHHHHHHHhcCCCEEEECC
No 358
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=21.36 E-value=2.8e+02 Score=28.17 Aligned_cols=66 Identities=23% Similarity=0.195 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEE
Q psy10958 87 FAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMT 154 (321)
Q Consensus 87 FS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vT 154 (321)
++.+.+.+..++|+++|..-..+++. ..+.+..+.++++-.+..|++...-+.+++..+ +|+|.|-
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~--~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHS--IYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcH--hHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEE
Confidence 55788999999999988876444332 234455555555545677888788888888874 7999973
No 359
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=21.28 E-value=6.5e+02 Score=23.18 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeeccC--HHHHHHHHHhcCc---eeecC-
Q psy10958 33 DASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFA--FAQAVACAEAGVT---LISPY- 106 (321)
Q Consensus 33 e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~TlvFS--~~Qa~aaa~Aga~---~iSpf- 106 (321)
.-|+..-.+++..|.+.|. +.|.|=.=+|..-.++++.+++. |+++=+.+--+ ++...-... .++ ++|.-
T Consensus 68 HLMv~~P~~~i~~~~~~ga--d~I~~H~Ea~~~~~~~l~~Ir~~-g~k~GlalnP~T~~~~i~~~l~-~vD~VlvMtV~P 143 (223)
T PRK08745 68 HLMVEPVDRIVPDFADAGA--TTISFHPEASRHVHRTIQLIKSH-GCQAGLVLNPATPVDILDWVLP-ELDLVLVMSVNP 143 (223)
T ss_pred EeccCCHHHHHHHHHHhCC--CEEEEcccCcccHHHHHHHHHHC-CCceeEEeCCCCCHHHHHHHHh-hcCEEEEEEECC
Confidence 3344444555555555564 47778777777666777777765 76654444331 111111111 222 22332
Q ss_pred CCCC----CCchHHHHHHHHHHHhcCCceEEeecccCCHhHHHHH--hCCCeEEeCHHHH
Q psy10958 107 APTE----DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMTIGPKLL 160 (321)
Q Consensus 107 ~~~~----d~Gi~~v~~i~~~~~~~~~~T~vl~AS~r~~~~v~~L--aG~d~vTipp~~l 160 (321)
+-.+ ...+.-++++.+++.++++++++-+..=-|.+.+..+ +|+|.+.+.-.++
T Consensus 144 Gf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 144 GFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhh
Confidence 1111 1346677888888888888888877775666777664 8999998886654
No 360
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=21.19 E-value=3e+02 Score=27.19 Aligned_cols=48 Identities=31% Similarity=0.432 Sum_probs=32.4
Q ss_pred eeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCC-ceEEee
Q psy10958 84 TLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMG 135 (321)
Q Consensus 84 TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~-~T~vl~ 135 (321)
|+=.-..||+.-|+||++.|+|=+-++ | .+..|.+.+.+.|+ +|-||+
T Consensus 148 Tle~l~k~Avs~AeAGAdivAPSdMMD--G--rV~aIR~aLd~ag~~~v~IMs 196 (330)
T COG0113 148 TLEILAKQAVSQAEAGADIVAPSDMMD--G--RVGAIREALDEAGFIDVPIMS 196 (330)
T ss_pred HHHHHHHHHHHHHHcCCCeeccccccc--c--hHHHHHHHHHHcCCCcceeee
Confidence 333446899999999999999974332 2 24455566667665 466665
No 361
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=21.18 E-value=90 Score=29.55 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCC---CceE-----EEecC--------------
Q psy10958 5 VILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDK---ERIL-----IKLAS-------------- 62 (321)
Q Consensus 5 ~v~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~---~nv~-----IKIPa-------------- 62 (321)
...+.+.+....+-+|.+-++|.+.... . .+.+.++.+ .|++. -|-+ |-+..
T Consensus 150 ~~~i~~~v~~~~~~Pv~vKL~p~~~~~~-~-~~~~~~~~~----~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG 223 (295)
T PF01180_consen 150 VAEIVRAVREAVDIPVFVKLSPNFTDIE-P-FAIAAELAA----DGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSG 223 (295)
T ss_dssp HHHHHHHHHHHHSSEEEEEE-STSSCHH-H-HHHHHHHHT----HTECEEEE---EEEEE-EETTTTEESSSGGEEEEEE
T ss_pred HHHHHHHHHhccCCCEEEEecCCCCchH-H-HHHHHHhhc----cceeEEEEecCccCcccccchhcceeeccccCCcCc
Confidence 3445555555557799999999655332 2 333333332 23331 1111 22221
Q ss_pred ---CHHHHHHHHHHHHhhC--ceeeee-eccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHH
Q psy10958 63 ---TWEGIQAAKVLESEYG--IHCNLT-LLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYK 125 (321)
Q Consensus 63 ---T~eGi~A~~~L~~~~G--I~vn~T-lvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~ 125 (321)
.+-.++.++++.+..+ +++-.+ .|+|.++++....|||+.+..+...-..|...+++|.+-++
T Consensus 224 ~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~ 292 (295)
T PF01180_consen 224 PAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELE 292 (295)
T ss_dssp GGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHH
Confidence 1235788888887645 777654 89999999999999999998884332334445555554443
No 362
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=21.11 E-value=9.1e+02 Score=24.81 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeeeec---------cCHHHHHHHHHhcCceeecC
Q psy10958 36 IAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLL---------FAFAQAVACAEAGVTLISPY 106 (321)
Q Consensus 36 i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~Tlv---------FS~~Qa~aaa~Aga~~iSpf 106 (321)
.+-++.|.+.. .+ ..+++|-||-+ |+.++..+....|++.-..++ .+..|...-... .....|.
T Consensus 275 ~~~G~~La~~~---~~-~~D~Vv~vPds--g~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~-~~k~~~~ 347 (469)
T PRK05793 275 VRAGRQLYKEY---PV-DADIVIGVPDS--GIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAV-RVKLNPL 347 (469)
T ss_pred HHHHHHHHHhc---CC-CCCEEEEcCcc--HHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhh-eEecccC
Confidence 45666777653 22 24688999988 688888888777998854333 123333321111 1111222
Q ss_pred -----CC---CCCCch---HHHHHHHHHHHhcCCceEEeecc-----------------------cCCHhHHHHHhCCCe
Q psy10958 107 -----AP---TEDPGV---VSVTKIYNYYKKFGYKTVVMGAS-----------------------FRNTGEILALAGCDL 152 (321)
Q Consensus 107 -----~~---~~d~Gi---~~v~~i~~~~~~~~~~T~vl~AS-----------------------~r~~~~v~~LaG~d~ 152 (321)
++ .-||.+ ..++.+.+.+++.|.+-..++++ -+++++|.+.+|+|.
T Consensus 348 ~~~v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~~gid~~~~~elia~~~~~~ei~~~~g~ds 427 (469)
T PRK05793 348 KVNVEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGIDTPYRKELIGANMSVEEIREMIGADS 427 (469)
T ss_pred ccccCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcchhhhccCCChhhEEEcCCCHHHHHHHhCCCe
Confidence 11 224443 44677888898887654322221 267889999999998
Q ss_pred E-EeCHHHHHHHh
Q psy10958 153 M-TIGPKLLEELE 164 (321)
Q Consensus 153 v-Tipp~~l~~l~ 164 (321)
+ =+|.+-|.+-.
T Consensus 428 l~~ls~~~l~~a~ 440 (469)
T PRK05793 428 LGYLSIEGLLESL 440 (469)
T ss_pred EeccCHHHHHHHh
Confidence 8 56665554444
No 363
>PF12118 SprA-related: SprA-related family; InterPro: IPR021973 Most members of this uncharacterised protein family are annotated as being SprA-related.
Probab=21.08 E-value=1.2e+02 Score=29.55 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCCcEEEEecCCcCCCHHHHHHHHHHHHHH
Q psy10958 16 IPGRVSTEVDARLSFDKDASIAKAKKYIKM 45 (321)
Q Consensus 16 ~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~ 45 (321)
+.|.|++-++| +..|++++|++++.+.+.
T Consensus 189 vgGeV~id~s~-v~~~P~ati~k~~~v~~A 217 (294)
T PF12118_consen 189 VGGEVSIDTSP-VPGDPEATIQKMQQVRAA 217 (294)
T ss_pred ccceeeeeecC-CCCCHHHHHHHHHHHHHH
Confidence 45899999998 789999999999999875
No 364
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=21.07 E-value=2.5e+02 Score=24.53 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=38.2
Q ss_pred EEEecCCH-----------HHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceee
Q psy10958 57 LIKLASTW-----------EGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLIS 104 (321)
Q Consensus 57 ~IKIPaT~-----------eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iS 104 (321)
+||+.... .-++.+..+.+.+|+++-++-|=+.+|...+.+.|++|+.
T Consensus 170 ~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~~~~~gi~~~Q 228 (240)
T cd01948 170 YLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQ 228 (240)
T ss_pred EEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHcCCCeee
Confidence 57888432 3466666666656999999999999999999999997663
No 365
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=21.04 E-value=2.3e+02 Score=22.00 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=26.4
Q ss_pred CCcEEEEecCCcCCCHHHHHHHHHHHHHHHH-HcCCCCCceEEEec
Q psy10958 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYE-EAGIDKERILIKLA 61 (321)
Q Consensus 17 ~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~-~~gi~~~nv~IKIP 61 (321)
+.+|.+|+.-.-+.+.+.=-+=-+.|.+.+. +.||++++|+|=|=
T Consensus 27 ~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~l~ 72 (82)
T PF14552_consen 27 DDFVIIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMIVLV 72 (82)
T ss_dssp TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEEEEE
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 5689999876556666655555556666554 47999999998764
No 366
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.88 E-value=6.1e+02 Score=22.72 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=68.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHH-HHHHHHHHHHhh-CceeeeeeccCHHHHHH----HHHhcCc
Q psy10958 28 LSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE-GIQAAKVLESEY-GIHCNLTLLFAFAQAVA----CAEAGVT 101 (321)
Q Consensus 28 la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~e-Gi~A~~~L~~~~-GI~vn~TlvFS~~Qa~a----aa~Aga~ 101 (321)
+...++..++-++.|.+. ||+ .|-|=.|...+ -.+.++.+.+.. ...+.+-.-.....-.. +..+|++
T Consensus 9 ~~~~~~~k~~i~~~L~~~----Gv~--~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 82 (237)
T PF00682_consen 9 VAFSTEEKLEIAKALDEA----GVD--YIEVGFPFASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGID 82 (237)
T ss_dssp TT--HHHHHHHHHHHHHH----TTS--EEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSS
T ss_pred CCcCHHHHHHHHHHHHHh----CCC--EEEEcccccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCC
Confidence 446677777766666665 665 66666665443 445555554321 33333222333333333 3347887
Q ss_pred eeecCCC---------CC---CCchHHHHHHHHHHHhcCCceEEee--cccCCHhHHHHH------hCCCeEEeC
Q psy10958 102 LISPYAP---------TE---DPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILAL------AGCDLMTIG 156 (321)
Q Consensus 102 ~iSpf~~---------~~---d~Gi~~v~~i~~~~~~~~~~T~vl~--AS~r~~~~v~~L------aG~d~vTip 156 (321)
.+..|.. .. ...+..+.++.++.++.|++..+-. ++-.+..++.++ +|+|.++++
T Consensus 83 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 83 IIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp EEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred EEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 7666611 11 2346778888899999998874433 334566666652 599988764
No 367
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=20.83 E-value=5.2e+02 Score=25.62 Aligned_cols=69 Identities=7% Similarity=0.027 Sum_probs=51.2
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHcCC--CCCceEEEecCCHHHHHHHHHHHHhhCcee-eeeeccCHHHHHHHH
Q psy10958 27 RLSFDKDASIAKAKKYIKMYEEAGI--DKERILIKLASTWEGIQAAKVLESEYGIHC-NLTLLFAFAQAVACA 96 (321)
Q Consensus 27 ~la~d~e~~i~~A~~L~~~~~~~gi--~~~nv~IKIPaT~eGi~A~~~L~~~~GI~v-n~TlvFS~~Qa~aaa 96 (321)
.+++|.++..+++.++.+.+.+.|+ .+++|+|-.|-+++-+.++=.+.+. |..+ -+..-++..+-....
T Consensus 17 ~~~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~-G~~~vpl~~~~~~~~~~~~~ 88 (452)
T PRK07445 17 LIGYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAA-GCPVFLANPHWGQQEWQQVL 88 (452)
T ss_pred eeecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHh-CcEEEeeccCCCHHHHHHHH
Confidence 3689999999999999999999887 3678999999999988777666654 5433 334445555444433
No 368
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=20.72 E-value=4.1e+02 Score=26.08 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=35.7
Q ss_pred cEEEEecCCcCCCHHHHHHHHHH--------HHHHHHHcCCCCCceEEEecCC-----HHHHHHHHHHHHhhCcee
Q psy10958 19 RVSTEVDARLSFDKDASIAKAKK--------YIKMYEEAGIDKERILIKLAST-----WEGIQAAKVLESEYGIHC 81 (321)
Q Consensus 19 ~Vs~EV~p~la~d~e~~i~~A~~--------L~~~~~~~gi~~~nv~IKIPaT-----~eGi~A~~~L~~~~GI~v 81 (321)
-|-+=.|+... +.++=++-+++ |++..++.|| ++++|-.-++ .+-+++++.+++++|+++
T Consensus 150 vIvLa~d~~~p-t~e~Rl~i~~~~~~~~~~gll~~a~~~GI--~diliDplVlpvs~~~~tl~aI~~iK~~~G~pt 222 (308)
T PRK00979 150 AIVLAFDPMDP-SVEGRLKMLEEGGKGQDKGMLPLAEEAGI--ERPLVDTAVTPLPGSGAAIRAIFAVKAKFGYPV 222 (308)
T ss_pred EEEEEcCCCCC-CHHHHHHHHHhccccchHHHHHHHHHcCC--CcEEeccCCCcCccHHHHHHHHHHHHHHcCCCe
Confidence 45555666544 77777777777 6777777777 3766654222 234666666665545444
No 369
>PRK09875 putative hydrolase; Provisional
Probab=20.43 E-value=7.7e+02 Score=23.68 Aligned_cols=158 Identities=12% Similarity=0.093 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHhccCC------CcE-EEEecC-CcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHH
Q psy10958 2 DKLVILFGTEILNIIP------GRV-STEVDA-RLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVL 73 (321)
Q Consensus 2 d~~~v~~~~~i~~~~~------G~V-s~EV~p-~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L 73 (321)
|.+...+.++|..+++ |.+ -+=++. .+....+..++.|-+.... -|. =|.+=.|...+|.+.++.|
T Consensus 99 e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~---TG~---pi~~Ht~~~~~g~e~l~il 172 (292)
T PRK09875 99 QELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQ---TGR---PISTHTSFSTMGLEQLALL 172 (292)
T ss_pred HHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHH---HCC---cEEEcCCCccchHHHHHHH
Confidence 5677788888888775 443 232333 2455666666666655443 233 3666777766999999999
Q ss_pred HHhhCc---eeeeeec---cCHHHHHHHHHhcCcee-ecCCCCCCCchHHHHHHHHHHHhcCCceEEee-cccCCHhHHH
Q psy10958 74 ESEYGI---HCNLTLL---FAFAQAVACAEAGVTLI-SPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG-ASFRNTGEIL 145 (321)
Q Consensus 74 ~~~~GI---~vn~Tlv---FS~~Qa~aaa~Aga~~i-Spf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~-AS~r~~~~v~ 145 (321)
.++ |+ +|.++-+ +.+.+....++.||.+- .-|++...-+.....++...+.++||.-++|- .-+-...+..
T Consensus 173 ~e~-Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~ 251 (292)
T PRK09875 173 QAH-GVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLK 251 (292)
T ss_pred HHc-CcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCccccc
Confidence 987 99 6776666 79999999999997432 12332211122233455556666786555554 3232222222
Q ss_pred HHhCCCeEEeCHHHHHHHhcC
Q psy10958 146 ALAGCDLMTIGPKLLEELENS 166 (321)
Q Consensus 146 ~LaG~d~vTipp~~l~~l~~~ 166 (321)
..-|..+-.+...++-.|...
T Consensus 252 ~~gg~G~~~i~~~~ip~L~~~ 272 (292)
T PRK09875 252 ANGGYGYDYLLTTFIPQLRQS 272 (292)
T ss_pred ccCCCChhHHHHHHHHHHHHc
Confidence 222332334444555555553
No 370
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=20.29 E-value=7.7e+02 Score=23.62 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=76.4
Q ss_pred HHHHHHhccCCCcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHHHHHhhCceeeee-e
Q psy10958 7 LFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLT-L 85 (321)
Q Consensus 7 ~~~~~i~~~~~G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~eGi~A~~~L~~~~GI~vn~T-l 85 (321)
+..+.+++.++ .+.+-+|+.-+++.+. ...+++|... + =.+|-=|.-+.-+...++|.+..++++.+- -
T Consensus 162 ~~v~~vr~~~~-~~~l~vDaN~~~~~~~-a~~~~~l~~~----~----~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs 231 (324)
T TIGR01928 162 QLVKLRRLRFP-QIPLVIDANESYDLQD-FPRLKELDRY----Q----LLYIEEPFKIDDLSMLDELAKGTITPICLDES 231 (324)
T ss_pred HHHHHHHHhCC-CCcEEEECCCCCCHHH-HHHHHHHhhC----C----CcEEECCCChhHHHHHHHHHhhcCCCEeeCCC
Confidence 45566676664 4778888877788865 3334444331 1 136776776555566666665446776554 6
Q ss_pred ccCHHHHHHHHHhcC-ceeecCCCCCCCchHHHHHHHHHHHhcCCceEE
Q psy10958 86 LFAFAQAVACAEAGV-TLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVV 133 (321)
Q Consensus 86 vFS~~Qa~aaa~Aga-~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~v 133 (321)
+++..+.....+.|+ +++.|= ..---|+...+++..+-+.+|.+.-+
T Consensus 232 ~~~~~~~~~~~~~~~~dvi~~d-~~~~GGit~~~~~~~~A~~~gi~~~~ 279 (324)
T TIGR01928 232 ITSLDDARNLIELGNVKVINIK-PGRLGGLTEVQKAIETCREHGAKVWI 279 (324)
T ss_pred cCCHHHHHHHHHcCCCCEEEeC-cchhcCHHHHHHHHHHHHHcCCeEEE
Confidence 899999988888764 566653 11224688899999999999877654
No 371
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=20.22 E-value=6.4e+02 Score=22.66 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH-----HHHHHHHHHHHhhCceeeeeecc------------CHHH
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW-----EGIQAAKVLESEYGIHCNLTLLF------------AFAQ 91 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~-----eGi~A~~~L~~~~GI~vn~TlvF------------S~~Q 91 (321)
..+++..+.+.++.++. |.+.=.+.+-+..-. +=+..+..+..++|+++-+.... ...+
T Consensus 72 ~~~~~~~~~~v~~a~~~----Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~ 147 (235)
T cd00958 72 DDNDKVLVASVEDAVRL----GADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAY 147 (235)
T ss_pred CCCchhhhcCHHHHHHC----CCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHH
Confidence 34666666666666654 444223344333222 12333444433458877664321 3455
Q ss_pred -HHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhcCCceEEeec-ccCCHhH----HHH--HhCCCeEEeCHHHH
Q psy10958 92 -AVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGE----ILA--LAGCDLMTIGPKLL 160 (321)
Q Consensus 92 -a~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~~~~T~vl~A-S~r~~~~----v~~--LaG~d~vTipp~~l 160 (321)
+..|.++|++||..+.. .++...+++.+ ....+..+.+- +.++..+ +.. .+|++-+.+...++
T Consensus 148 ~~~~a~~~GaD~Ik~~~~---~~~~~~~~i~~---~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~ 218 (235)
T cd00958 148 AARIGAELGADIVKTKYT---GDAESFKEVVE---GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF 218 (235)
T ss_pred HHHHHHHHCCCEEEecCC---CCHHHHHHHHh---cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhh
Confidence 66788999999988621 24555555543 23344433332 3466554 333 37999998888877
No 372
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=20.16 E-value=3.5e+02 Score=25.48 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe---c--CCH-HH---HHHHHHHHHhh-Cceeee
Q psy10958 29 SFDKDASIAKAKKYIKMYEEAGIDKERILIKL---A--STW-EG---IQAAKVLESEY-GIHCNL 83 (321)
Q Consensus 29 a~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKI---P--aT~-eG---i~A~~~L~~~~-GI~vn~ 83 (321)
..+.++.++.++++++...+.||+++|+++=- | .+. .+ +++++.+...+ |.++.+
T Consensus 130 P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~ 194 (261)
T PRK07535 130 PKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTC 194 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 35678888999999998889999999998864 2 221 23 78888888654 777754
No 373
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=20.10 E-value=8.2e+02 Score=23.85 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=54.1
Q ss_pred HHHHHHHHhccC--C--CcEEEEecCCcCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecCCH--------------HH
Q psy10958 5 VILFGTEILNII--P--GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTW--------------EG 66 (321)
Q Consensus 5 ~v~~~~~i~~~~--~--G~Vs~EV~p~la~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIPaT~--------------eG 66 (321)
+..+...+.+.. . ..+++|++|..- |. ...+.+++.|++ ++-|-|-+.. +-
T Consensus 70 l~~ll~~i~~~~~~~~~~eit~e~~p~~l-~~--------e~l~~l~~~G~~--rvsiGvqS~~~~~l~~l~r~~~~~~~ 138 (377)
T PRK08599 70 LERLLTAIHRNLPLSGLEEFTFEANPGDL-TK--------EKLQVLKDSGVN--RISLGVQTFNDELLKKIGRTHNEEDV 138 (377)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCC-CH--------HHHHHHHHcCCC--EEEEecccCCHHHHHHcCCCCCHHHH
Confidence 344555555542 2 279999999643 21 233344445654 6666665442 35
Q ss_pred HHHHHHHHHhhCce-eeeeeccCH-HH--------HHHHHHhcCceeecC
Q psy10958 67 IQAAKVLESEYGIH-CNLTLLFAF-AQ--------AVACAEAGVTLISPY 106 (321)
Q Consensus 67 i~A~~~L~~~~GI~-vn~TlvFS~-~Q--------a~aaa~Aga~~iSpf 106 (321)
+++++.+.+. |++ +|+.++|++ .| ...+.+.++..++.|
T Consensus 139 ~~~i~~l~~~-g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y 187 (377)
T PRK08599 139 YEAIANAKKA-GFDNISIDLIYALPGQTIEDFKESLAKALALDIPHYSAY 187 (377)
T ss_pred HHHHHHHHHc-CCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeee
Confidence 6788888876 997 799999985 33 223444577666666
No 374
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.06 E-value=7e+02 Score=23.03 Aligned_cols=97 Identities=22% Similarity=0.168 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEec---CCHHHHHH-HHHHHH----hhCceeeeeeccCHHHHHHHHHhcCc
Q psy10958 30 FDKDASIAKAKKYIKMYEEAGIDKERILIKLA---STWEGIQA-AKVLES----EYGIHCNLTLLFAFAQAVACAEAGVT 101 (321)
Q Consensus 30 ~d~e~~i~~A~~L~~~~~~~gi~~~nv~IKIP---aT~eGi~A-~~~L~~----~~GI~vn~TlvFS~~Qa~aaa~Aga~ 101 (321)
.+.+..++-++++.+. |++ .|.|+=. +||+.+.. ++.+.+ ..|+++.=|.=.++.-+++|.++|++
T Consensus 136 ~~~~~~~~~~~~~~~~----G~~--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~ 209 (259)
T cd07939 136 ADPDFLIEFAEVAQEA----GAD--RLRFADTVGILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAGAT 209 (259)
T ss_pred CCHHHHHHHHHHHHHC----CCC--EEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 5677777777777654 543 5555432 34444321 222222 13788888888999999999999998
Q ss_pred ee--ecCCCCCCCchHHHHHHHHHHHhc-CCceE
Q psy10958 102 LI--SPYAPTEDPGVVSVTKIYNYYKKF-GYKTV 132 (321)
Q Consensus 102 ~i--Spf~~~~d~Gi~~v~~i~~~~~~~-~~~T~ 132 (321)
++ |.++--+-.|-.....+..+++.. |++|.
T Consensus 210 ~vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~~~~ 243 (259)
T cd07939 210 HVSVTVNGLGERAGNAALEEVVMALKHLYGRDTG 243 (259)
T ss_pred EEEEecccccccccCcCHHHHHHHHHHhcCCCCC
Confidence 76 333322335555556666666654 76653
No 375
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.04 E-value=3.6e+02 Score=26.19 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=57.1
Q ss_pred CceEEEe------cCCHHHHHHHHHHHHhhCceeeeeeccCHHHHHHHHHhcCceeecCCCCCCCchHHHHHHHHHHHhc
Q psy10958 54 ERILIKL------ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPGVVSVTKIYNYYKKF 127 (321)
Q Consensus 54 ~nv~IKI------PaT~eGi~A~~~L~~~~GI~vn~TlvFS~~Qa~aaa~Aga~~iSpf~~~~d~Gi~~v~~i~~~~~~~ 127 (321)
+-||||= ..-.+-++.++.+... .++ ---+-|++|+..|+++|++.|- .++-....++++..+.+.
T Consensus 177 D~vLIkdNHi~~~G~i~~av~~~r~~~~~--~kI-eVEvetleea~eA~~aGaDiIm----LDnmspe~l~~av~~~~~- 248 (294)
T PRK06978 177 DGILIKENHIAAAGGVGAALDAAFALNAG--VPV-QIEVETLAQLETALAHGAQSVL----LDNFTLDMMREAVRVTAG- 248 (294)
T ss_pred ceEEEeHHHHHHhCCHHHHHHHHHHhCCC--CcE-EEEcCCHHHHHHHHHcCCCEEE----ECCCCHHHHHHHHHhhcC-
Confidence 4588872 2222334455544321 222 2345789999999999998773 344456677777776543
Q ss_pred CCceEEeecccCCHhHHHH--HhCCCeEEeCH
Q psy10958 128 GYKTVVMGASFRNTGEILA--LAGCDLMTIGP 157 (321)
Q Consensus 128 ~~~T~vl~AS~r~~~~v~~--LaG~d~vTipp 157 (321)
+..+-++.=-|.+.+.+ ..|+|.+.++.
T Consensus 249 --~~~lEaSGGIt~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 249 --RAVLEVSGGVNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred --CeEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 34444554567777776 46899885543
Done!