RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10958
(321 letters)
>gnl|CDD|235381 PRK05269, PRK05269, transaldolase B; Provisional.
Length = 318
Score = 425 bits (1095), Expect = e-150
Identities = 161/248 (64%), Positives = 185/248 (74%), Gaps = 22/248 (8%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
+DKL + FG EIL +IPGRVSTEVDARLSFD +A+IAKA+K I +YEEAGI K+RILIK+
Sbjct: 74 IDKLAVNFGLEILKLIPGRVSTEVDARLSFDTEATIAKARKLIALYEEAGISKDRILIKI 133
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
ASTWEGI+AA+ LE E GI+CNLTLLF+FAQA ACAEAGV LISP
Sbjct: 134 ASTWEGIRAAEQLEKE-GINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGK 192
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
YAP EDPGVVSVTKIYNYYKK GYKTVVMGASFRNTG+IL LAGCD +TI P LLEEL
Sbjct: 193 KEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRLTISPALLEEL 252
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
S +++ LS KA + L E+ FRW+ NED MATEKL++GIRKFA D EK
Sbjct: 253 AASEGELERKLSPPGEAKA--RPVPLTEAEFRWQHNEDAMATEKLAEGIRKFAKDQ--EK 308
Query: 224 LTKTFSAK 231
L K +AK
Sbjct: 309 LEKLIAAK 316
Score = 65.2 bits (160), Expect = 5e-12
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Query: 276 LLKELILKKK----NIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
L+ + + K + A+Q + A+DKL + FG EIL +IPGRVSTEVDAR
Sbjct: 51 LIDDAVAWAKQQSGDRAQQIDDAIDKLAVNFGLEILKLIPGRVSTEVDAR 100
>gnl|CDD|188644 cd00957, Transaldolase_TalAB, Transaldolases including both TalA
and TalB. Transaldolases including both TalA and TalB.
The enzyme catalyses the reversible transfer of a
dyhydroxyacetone moiety, derived from
fructose-6-phosphate to erythrose-4-phosphate yielding
sedoheptulose-7-phosphate and
glyceraldehyde-3-phosphate. The catalytic mechanism is
similar to other class I aldolases. The enzyme is found
in the non-oxidative branch of the pentose phosphate
pathway and forms a dimer in solution.
Length = 313
Score = 375 bits (966), Expect = e-131
Identities = 166/245 (67%), Positives = 188/245 (76%), Gaps = 20/245 (8%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
+DKL++ FGTEIL +IPGRVSTEVDARLSFD +A+IAKA+K IK+YEEAGIDKERILIK+
Sbjct: 72 LDKLLVNFGTEILKLIPGRVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKI 131
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
A+TWEGIQAAK LE E GIHCNLTLLF+FAQAVACAEAGVTLISP
Sbjct: 132 AATWEGIQAAKQLEKE-GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGD 190
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
Y EDPGV SV KIYNYYKKFGYKT VMGASFRN G+ILALAGCD +TI P LLEEL
Sbjct: 191 KAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILALAGCDYLTISPALLEEL 250
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
+NST V++ L ++K ++ LDESAFRW LNED MA EKLS+GIR FA D+ K
Sbjct: 251 KNSTAKVERKLDPAASKALDIHPNFLDESAFRWALNEDAMAVEKLSEGIRGFAKDA--VK 308
Query: 224 LTKTF 228
L K
Sbjct: 309 LEKLI 313
Score = 60.7 bits (148), Expect = 2e-10
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 283 KKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
K + +Q A+DKL++ FGTEIL +IPGRVSTEVDAR
Sbjct: 60 KGGSDEDQISNALDKLLVNFGTEILKLIPGRVSTEVDAR 98
>gnl|CDD|240406 PTZ00411, PTZ00411, transaldolase-like protein; Provisional.
Length = 333
Score = 358 bits (921), Expect = e-124
Identities = 161/241 (66%), Positives = 179/241 (74%), Gaps = 21/241 (8%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA 61
DKL + FG EIL I+PGRVSTEVDARLSFDK A + KA+K IKMYEEAGI K+RILIKLA
Sbjct: 85 DKLTVNFGVEILKIVPGRVSTEVDARLSFDKQAMVDKARKIIKMYEEAGISKDRILIKLA 144
Query: 62 STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP---------------- 105
STWEGIQAAK LE E GIHCNLTLLF+FAQAVACA+AGVTLISP
Sbjct: 145 STWEGIQAAKALEKE-GIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAE 203
Query: 106 -YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELE 164
Y +DPGV+SVTKIYNYYKK GYKT+VMGASFRNTGEIL LAGCD +TI PKLLEEL
Sbjct: 204 SYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKLTISPKLLEELA 263
Query: 165 NST-TPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
N+ PV++ L + + L E FRWELNED MATEKL++GIR FA D EK
Sbjct: 264 NTEDGPVERKLDPEKLTEDTEKLPELTEKEFRWELNEDAMATEKLAEGIRNFAKDL--EK 321
Query: 224 L 224
L
Sbjct: 322 L 322
Score = 49.4 bits (118), Expect = 9e-07
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 288 AEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
E E +DKL + FG EIL I+PGRVSTEVDAR
Sbjct: 77 EELVELVVDKLTVNFGVEILKIVPGRVSTEVDAR 110
>gnl|CDD|162081 TIGR00874, talAB, transaldolase. This family includes the majority
of known and predicted transaldolase sequences,
including E. coli TalA and TalB. It excluded two other
families. The first includes E. coli transaldolase-like
protein TalC. The second family includes the putative
transaldolases of Helicobacter pylori and Mycobacterium
tuberculosis [Energy metabolism, Pentose phosphate
pathway].
Length = 317
Score = 355 bits (913), Expect = e-123
Identities = 156/248 (62%), Positives = 183/248 (73%), Gaps = 20/248 (8%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
+DKL + FG EIL I+PGRVSTEVDARLSFD +A++ KA+ IK+YE+AG+DK+RILIK+
Sbjct: 72 LDKLAVNFGLEILKIVPGRVSTEVDARLSFDTEATVEKARHLIKLYEDAGVDKKRILIKI 131
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
ASTWEGI+AA+ LE E GIHCNLTLLF+F QA+ACAEA VTLISP
Sbjct: 132 ASTWEGIRAAEELEKE-GIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGK 190
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
Y+ EDPGV SV KIYNYYKK GY T VMGASFRN EILALAGCD +TI P LL+EL
Sbjct: 191 KEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRLTISPALLDEL 250
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
+ ST PV++ L +SAKK + I LDES FR+ NED MATEKL++GIRKFA D EK
Sbjct: 251 KESTGPVERKLDPESAKKVDKQPIILDESEFRFLHNEDAMATEKLAEGIRKFAADQ--EK 308
Query: 224 LTKTFSAK 231
L K K
Sbjct: 309 LEKLLEEK 316
Score = 56.3 bits (136), Expect = 5e-09
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 288 AEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
A+Q E A+DKL + FG EIL I+PGRVSTEVDAR
Sbjct: 65 AQQVENALDKLAVNFGLEILKIVPGRVSTEVDAR 98
>gnl|CDD|183458 PRK12346, PRK12346, transaldolase A; Provisional.
Length = 316
Score = 347 bits (893), Expect = e-120
Identities = 141/247 (57%), Positives = 172/247 (69%), Gaps = 22/247 (8%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA 61
DKL + FG EIL +PGRVSTEVDARLSFD++ SI KA+ + +Y++ GIDK RILIKLA
Sbjct: 74 DKLAVNFGAEILKSVPGRVSTEVDARLSFDREKSIEKARHLVDLYQQQGIDKSRILIKLA 133
Query: 62 STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP---------------- 105
STWEGI+AA+ LE E GI+CNLTLLF+FAQA ACAEAGV LISP
Sbjct: 134 STWEGIRAAEELEKE-GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMD 192
Query: 106 -YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELE 164
Y EDPGV SV IY+YYK+ Y+T+VMGASFR T +ILALAGCD +TI P LL+EL+
Sbjct: 193 PYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILALAGCDRLTISPNLLKELQ 252
Query: 165 NSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEKL 224
S +PV++ L + + + E+ FRWE N+D MA EKLS+GIR FAVD R KL
Sbjct: 253 ESESPVERKLI--PSSQTFPRPAPMSEAEFRWEHNQDAMAVEKLSEGIRLFAVDQR--KL 308
Query: 225 TKTFSAK 231
+AK
Sbjct: 309 EDLLAAK 315
Score = 57.0 bits (138), Expect = 3e-09
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 289 EQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
+Q AA DKL + FG EIL +PGRVSTEVDAR
Sbjct: 67 QQVVAACDKLAVNFGAEILKSVPGRVSTEVDAR 99
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 330 bits (849), Expect = e-112
Identities = 137/232 (59%), Positives = 170/232 (73%), Gaps = 18/232 (7%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
D+L + FG +IL I+PGRVSTEVDARLS+D +A+IAKA+K I +YE+AGI ++R+LIK+
Sbjct: 78 FDRLAVAFGLKILKIVPGRVSTEVDARLSYDTEATIAKARKLISLYEDAGISRDRVLIKI 137
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
ASTWEGI+AA+VLE E GIHCNLTLLF F QA+ACAEAGVTLISP
Sbjct: 138 ASTWEGIKAAEVLEKE-GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGR 196
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
Y EDPGV SVT+IYNYYKKFGYKT VMGASFRN GEI+ LAGCDL+TI PKLLE+L
Sbjct: 197 DSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLLTISPKLLEQL 256
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKF 215
++ + + L +A ++KI +D + F ED MA+EKL +GI+ F
Sbjct: 257 RSTEAELPRKLDPANAAGMEIEKIHMDRATFDKMHAEDRMASEKLDEGIKGF 308
Score = 52.4 bits (126), Expect = 1e-07
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 274 ETLL--KELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
ETL ++ + + + A D+L + FG +IL I+PGRVSTEVDAR
Sbjct: 55 ETLRQARKELGSDAPVEDVVALAFDRLAVAFGLKILKIVPGRVSTEVDAR 104
>gnl|CDD|216195 pfam00923, Transaldolase, Transaldolase.
Length = 244
Score = 215 bits (550), Expect = 3e-69
Identities = 79/176 (44%), Positives = 109/176 (61%), Gaps = 20/176 (11%)
Query: 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST 63
+ G EIL I GRVS EVD RL+ D + +IA+A++ I +Y + +LIK+ +T
Sbjct: 59 EELRPGYEILKGIDGRVSLEVDPRLADDTEGTIAEARRLIALYG-----RPNVLIKIPAT 113
Query: 64 WEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY--------------APT 109
WEG++A K L +E GI+ N+TL+F+ AQA+A AEAG ++ISP+ A
Sbjct: 114 WEGLKAIKELSAE-GINVNVTLIFSLAQALAAAEAGASVISPFVGRIDDWGDKRLGAALR 172
Query: 110 EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELEN 165
D GV + +IY YYKK+G+ T V+ ASFRN +LALAGCD +TI P LE L
Sbjct: 173 GDDGVANAKEIYQYYKKYGWSTGVLAASFRNVLYVLALAGCDTITIPPDTLEALAK 228
Score = 38.7 bits (91), Expect = 0.002
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 276 LLKELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
L E I + K I E A ++L G EIL I GRVS EVD R
Sbjct: 39 LYDEAIAEIKEIGGDDEEAYEEL--RPGYEILKGIDGRVSLEVDPR 82
>gnl|CDD|223254 COG0176, MipB, Transaldolase [Carbohydrate transport and
metabolism].
Length = 239
Score = 201 bits (514), Expect = 6e-64
Identities = 93/237 (39%), Positives = 125/237 (52%), Gaps = 49/237 (20%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
+ + FG EIL I+PGRV TEVD LSFD +A I +A++ K+ + GI +IK+
Sbjct: 45 KPRDAVEFGKEILKIVPGRV-TEVDEVLSFDAEAMIEEARRLAKLIDNVGI-----VIKI 98
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTED-------PG 113
+TWEG++A K LE+E GI N+TL+F+ AQA+ AEAG T ISP+ D G
Sbjct: 99 PATWEGLKAIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISPFVGRIDDWGIDGMLG 157
Query: 114 VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTPVDQM 173
+ +IY+YYK+ G KT+V A F N I ALAG D++TI P LL++L
Sbjct: 158 IAEAREIYDYYKQHGAKTLVASARFPNHVYIAALAGADVLTIPPDLLKQLLK-------- 209
Query: 174 LSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEKLTKTFSA 230
+ MA L +GIRKFA D EKL K+ S
Sbjct: 210 -------------------------HGGAMAVPLLDEGIRKFAKD--WEKLLKSLSE 239
Score = 35.3 bits (82), Expect = 0.024
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 250 NEDPMATEKLSDGIRKFAVDSRKLETLLKE 279
+ MA L +GIRKFA D KL L E
Sbjct: 210 HGGAMAVPLLDEGIRKFAKDWEKLLKSLSE 239
Score = 32.6 bits (75), Expect = 0.19
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 292 EAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
A + + FG EIL I+PGRV TEVD
Sbjct: 42 AGAKPRDAVEFGKEILKIVPGRV-TEVDEV 70
>gnl|CDD|188631 cd00439, Transaldolase, Transaldolase. Transaldolase. Enzymes
found in the non-oxidative branch of the pentose
phosphate pathway, that catalyze the reversible transfer
of a dihydroxyacetone group from fructose-6-phosphate to
erythrose-4-phosphate yielding sedoheptulose-7-phosphate
and glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates.
Length = 252
Score = 175 bits (445), Expect = 1e-53
Identities = 58/181 (32%), Positives = 78/181 (43%), Gaps = 25/181 (13%)
Query: 2 DKLVILFGTEILNII--PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIK 59
+ I + GRVS EV ARL+ D + AK K+ I IK
Sbjct: 67 IQDACKLFEPIYDQTEADGRVSVEVSARLADDTQGMVEAAKYLSKVVNR-----RNIYIK 121
Query: 60 LASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA------------ 107
+ +T EGI A K L + GI N+TL+F+ AQ A A+AG ++ SP+
Sbjct: 122 IPATAEGIPAIKDLIAA-GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLE 180
Query: 108 -----PTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEE 162
GV VT Y YK+ K V+ ASF +T + L GCD +T P E
Sbjct: 181 QIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWASFSDTLYVAPLIGCDTVTTMPDQALE 240
Query: 163 L 163
Sbjct: 241 A 241
Score = 30.0 bits (67), Expect = 1.4
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 290 QTEAAMDKLVILFGTEILNII--PGRVSTEVDAR 321
+ + I + GRVS EV AR
Sbjct: 61 ELVVKDIQDACKLFEPIYDQTEADGRVSVEVSAR 94
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 90.3 bits (225), Expect = 2e-21
Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 19/163 (11%)
Query: 10 TEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQA 69
EI II G VS +V + D + +A+A+K + +++K+ T +G++A
Sbjct: 44 KEICEIIDGPVSAQVVST---DAEGMVAEARKLASLGG-------NVVVKIPVTEDGLKA 93
Query: 70 AKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA-----PTEDPGVVSVTKIYNYY 124
K L E GI N+T +F+ AQA+ A+AG T +SP+ D + + +I +
Sbjct: 94 IKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGGDGMEL-IREIRTIF 151
Query: 125 KKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 165
+G+ T ++ AS RN ++ ALAG D +T+ P +LE+L
Sbjct: 152 DNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLK 194
>gnl|CDD|234947 PRK01362, PRK01362, putative translaldolase; Provisional.
Length = 214
Score = 87.1 bits (217), Expect = 3e-20
Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAA 70
EI +I+ G VS EV ++ D + I + ++ K+ +++K+ T EG++A
Sbjct: 45 EICSIVDGPVSAEV---IALDAEGMIKEGRELAKIAP-------NVVVKIPMTPEGLKAV 94
Query: 71 KVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTED----PGVVSVTKIYNYYKK 126
K L E GI N+TL+F+ QA+ A+AG T +SP+ D G+ + I Y
Sbjct: 95 KALSKE-GIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDN 153
Query: 127 FGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEEL 163
+G+ T ++ AS R+ +L ALAG D+ TI K++++L
Sbjct: 154 YGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQL 192
>gnl|CDD|129953 TIGR00875, fsa_talC_mipB, fructose-6-phosphate aldolase, TalC/MipB
family. This model represents a family that includes
the E. coli transaldolase homologs TalC and MipB, both
shown to be fructose-6-phosphate aldolases rather than
transaldolases as previously thought. It is related to
but distinct from the transaldolase family of E. coli
TalA and TalB. The member from Bacillus subtilis becomes
phosphorylated during early stationary phase but not
during exponential growth [Energy metabolism, Pentose
phosphate pathway].
Length = 213
Score = 74.9 bits (184), Expect = 6e-16
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAA 70
EI + G VS E +S D + + +AK+ K+ I++K+ T EG++A
Sbjct: 45 EIQEAVEGPVSAET---ISLDAEGMVEEAKELAKL-------APNIVVKIPMTSEGLKAV 94
Query: 71 KVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDP----GVVSVTKIYNYYKK 126
K+L+ E GI N+TL+F+ AQA+ A+AG T +SP+ D G+ + ++ ++
Sbjct: 95 KILKKE-GIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFEN 153
Query: 127 FGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 165
T V+ AS R+ +L AL G D+ T+ ++++L N
Sbjct: 154 HAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQLFN 194
>gnl|CDD|188642 cd00955, Transaldolase_like, Transaldolase-like proteins from
plants and bacteria. Transaldolase-like proteins from
plants and bacteria. Transaldolase is found in the
non-oxidative branch of the pentose phosphate pathway,
that catalyze the reversible transfer of a
dihydroxyacetone group from fructose-6-phosphate to
erythrose-4-phosphate yielding sedoheptulose-7-phosphate
and glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates.
Length = 338
Score = 60.4 bits (147), Expect = 2e-10
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEY 77
G VS EV RL+ D +IA+AK+ K + + ++IK+ +T G+ A + L +
Sbjct: 91 GYVSLEVSPRLADDTQGTIAEAKRLWKA-----VGRPNLMIKIPATEAGLPAIEELIAA- 144
Query: 78 GIHCNLTLLFAFAQAVACAEA 98
GI N+TL+F+ Q A AEA
Sbjct: 145 GISVNVTLIFSLEQYEAVAEA 165
>gnl|CDD|235117 PRK03343, PRK03343, transaldolase; Validated.
Length = 368
Score = 57.1 bits (139), Expect = 3e-09
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Query: 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEY 77
GRVS EV RL+ D +A+IA+A++ +D+ ++IK+ +T EG+ A + L +E
Sbjct: 104 GRVSIEVSPRLAHDTEATIAEARRLWAA-----VDRPNLMIKIPATPEGLPAIEALIAE- 157
Query: 78 GIHCNLTLLFAFAQAVACAEA 98
GI N+TL+F+ + A A+A
Sbjct: 158 GISVNVTLIFSVERYRAVADA 178
>gnl|CDD|235171 PRK03903, PRK03903, transaldolase; Provisional.
Length = 274
Score = 52.7 bits (127), Expect = 6e-08
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEY 77
G +S E+D L D SI + K+ K I + ++IK+ +T G +A L +
Sbjct: 43 GFISIEIDPFLEDDAAGSIEEGKRLYK-----TIGRPNVMIKVPATKAGYEAMSALMKK- 96
Query: 78 GIHCNLTLLFAFAQAVACAEA 98
GI N TL+F+ QA CAEA
Sbjct: 97 GISVNATLIFSPEQAKECAEA 117
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 49.2 bits (118), Expect = 2e-06
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEY 77
G VS EV L+ D + +IA+A++ +D+ ++IK+ +T EG+ A + L +E
Sbjct: 104 GFVSLEVSPYLALDTEGTIAEARRLWA-----AVDRPNLMIKVPATPEGLPAIRQLIAE- 157
Query: 78 GIHCNLTLLFAFAQAVACAEA 98
GI+ N+TLLF+ AEA
Sbjct: 158 GINVNVTLLFSQDVYEEVAEA 178
>gnl|CDD|129954 TIGR00876, tal_mycobact, transaldolase, mycobacterial type. This
model describes one of three related but easily
separable famiiles of known and putative transaldolases.
This family and the family typified by E. coli TalA and
TalB both contain experimentally verified examples
[Energy metabolism, Pentose phosphate pathway].
Length = 350
Score = 42.4 bits (99), Expect = 2e-04
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 18 GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEY 77
GR+S E+D L+ D SI +A + K+ +D+ + IK+ ++ GI+A L +
Sbjct: 94 GRISIEIDPFLADDAAKSIDEAIELFKI-----LDRPNLFIKIPASEAGIEAISALLAA- 147
Query: 78 GIHCNLTLLFAFAQAVACAEA 98
GI N+TL+F+ A A+A
Sbjct: 148 GIPVNVTLIFSPKIAGEIADA 168
>gnl|CDD|183653 PRK12653, PRK12653, fructose-6-phosphate aldolase; Reviewed.
Length = 220
Score = 41.3 bits (97), Expect = 2e-04
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 25/149 (16%)
Query: 56 ILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDP--- 112
I++K+ T EG+ A K+L++E GI T ++ AQ + A AG ++PY D
Sbjct: 82 IVVKVPVTAEGLAAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGG 140
Query: 113 -GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTP 169
G+ +VT + K + V+ ASF+ + L LAGC E+ T P
Sbjct: 141 SGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGC-------------ESITLP 187
Query: 170 VD---QMLSEKSAKKANLDKITLD-ESAF 194
+D QM+S A A + K D + AF
Sbjct: 188 LDVAQQMISY-PAVDAAVAKFEQDWQGAF 215
>gnl|CDD|183655 PRK12655, PRK12655, fructose-6-phosphate aldolase; Reviewed.
Length = 220
Score = 39.4 bits (92), Expect = 0.001
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 45 MYEEAGIDKERI---LIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVT 101
M EEA + I ++K+ T EG+ A K L+ E GI T +++ AQ + A AG
Sbjct: 68 MVEEAKRLRNAIPGIVVKIPVTAEGLAAIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAK 126
Query: 102 LISPYAPTEDP----GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCDLMTI 155
++PY D G+ V ++ + +++V+ ASF+ + L LAGC +T+
Sbjct: 127 YVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITL 186
Query: 156 GPKLLEELENSTTPVDQMLSEK 177
+ +++ N TP + EK
Sbjct: 187 PLDVAQQMLN--TPAVESAIEK 206
>gnl|CDD|226267 COG3744, COG3744, PIN domain nuclease, a component of
toxin-antitoxin system (PIN domain) [Signal transduction
mechanisms].
Length = 130
Score = 31.2 bits (71), Expect = 0.26
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 184 LDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEKLTKTFS----AKKANLDKIT 239
+ + LD AF W L E+LS+ R D+RN S A K + K+
Sbjct: 1 MRCLLLDTHAFLWWLLGP----ERLSETARSLIEDARNSIFVSAASAWEIAIKVRIGKLP 56
Query: 240 LDESAFRW 247
L E W
Sbjct: 57 LPEPPNSW 64
>gnl|CDD|237248 PRK12890, PRK12890, allantoate amidohydrolase; Reviewed.
Length = 414
Score = 30.6 bits (70), Expect = 1.1
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 14 NIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWE 65
N++PGRV +D R DA + A+ + EA + I+L
Sbjct: 278 NVVPGRVVFTLDLR--SPDDAVLEAAEAALLAELEAIAAARGVRIELERLSR 327
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 30.3 bits (69), Expect = 1.4
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 19/121 (15%)
Query: 176 EKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEKLTKTFSAKKANL 235
EK ++ + ++ E E E+L G+ K + K
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSKTK-----KNFGKGIKGLFLKK 59
Query: 236 DKITLDESAFRWELNED-------PMATEKLSDGIRKFAV------DSRKLETLLKELIL 282
K LDE EL E E++ + +RK D ++ L+E ++
Sbjct: 60 IKEKLDEDLL-EELEELLIEADVGVETAEEIIEELRKREGKKKKIKDEETVKEALREALI 118
Query: 283 K 283
+
Sbjct: 119 E 119
>gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy
production and conversion].
Length = 472
Score = 28.8 bits (65), Expect = 4.0
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 41 KYIKMYEEAGIDKERILIK----LASTWEGIQAAKVLESEYGI----HCNLTLLFAFAQA 92
+ K E G+D I IK L + +E + K ++ E + H + T A
Sbjct: 160 ELAKELLEMGVDS--ICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTY 217
Query: 93 VACAEAGV----TLISPYA-PTEDPGVVSVTKIYNYYKKFGYKT 131
+ EAGV T ISP + T P + + + GY T
Sbjct: 218 LKAVEAGVDGIDTAISPLSGGTSQPATET---MVAALRGTGYDT 258
>gnl|CDD|225187 COG2304, COG2304, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 399
Score = 28.8 bits (64), Expect = 4.0
Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 120 IYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSA 179
I + G V S + LL + EN+ VD A
Sbjct: 103 IDQSLQAGGATAVEASLSLAVE-LAAKALPRGTLNRIL-LLTDGENNLGLVDPSRLSALA 160
Query: 180 KKANLDKITLDESAFRWELNED 201
K A I LD ++NED
Sbjct: 161 KLAAGKGIVLDTLGLGDDVNED 182
>gnl|CDD|153334 cd07650, F-BAR_Syp1p_like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein.
F-BAR domains are dimerization modules that bind and
bend membranes and are found in proteins involved in
membrane dynamics and actin reorganization. Syp1p is
associated with septins, a family of GTP-binding
proteins that serve as elements of septin filaments,
which are required for cell morphogenesis and division.
Syp1p regulates cell-cycle dependent septin cytoskeletal
dynamics in yeast. It contains an N-terminal F-BAR
domain and a C-terminal domain of unknown function named
SAFF which is also present in FCH domain Only (FCHO)
proteins and endophilin interacting protein 1. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 228
Score = 28.4 bits (64), Expect = 4.2
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 19/92 (20%)
Query: 218 DSRNEKLTK---TFSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRKLE 274
+ +KL K S+K + L+E+ +W+ ++ P E L A+D +L
Sbjct: 123 QKKWDKLKKKHSKASSKAVSAAVSDLEEARQQWD-SQAPFLFELLQ------AIDEERLN 175
Query: 275 TLLKELILK--------KKNIAEQTEAAMDKL 298
LK+++L+ E E M++L
Sbjct: 176 H-LKDVLLQFQTHESDYALRTTESAEECMNQL 206
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 27.8 bits (62), Expect = 7.6
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 111 DPGVVSVTKIYNYYKKFGYKTVVMGASFR-NTGEILALAG 149
P V+ N K++G K VV G SF GE L G
Sbjct: 1 GPMSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLG 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,197,389
Number of extensions: 1582288
Number of successful extensions: 1981
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1934
Number of HSP's successfully gapped: 81
Length of query: 321
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 224
Effective length of database: 6,635,264
Effective search space: 1486299136
Effective search space used: 1486299136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)