RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10958
(321 letters)
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1
PDB: 2cwn_A 1f05_A
Length = 331
Score = 307 bits (787), Expect = e-104
Identities = 159/253 (62%), Positives = 190/253 (75%), Gaps = 19/253 (7%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
+DKL +LFG EIL IPGRVSTEVDARLSFDKDA +A+A++ I++Y+EAG+ K+RILIKL
Sbjct: 81 IDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYKEAGVGKDRILIKL 140
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
+STWEGIQA K LE ++GIHCN+TLLF+FAQAVACAEAGVTLISP
Sbjct: 141 SSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDK 200
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
Y P DPGV SVTKIYNYYKKFGYKT+VMGASFRNTGEI ALAGCD +TI PKLL EL
Sbjct: 201 KSYEPQGDPGVKSVTKIYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGEL 260
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
+ + LS K+A+ ++ +KI LDE AFRW NED MA EKLSDGIRKFA D+ K
Sbjct: 261 LKDNSKLAPALSVKAAQTSDSEKIHLDEKAFRWLHNEDQMAVEKLSDGIRKFAADA--IK 318
Query: 224 LTKTFSAKKANLD 236
L + + + + +
Sbjct: 319 LERMLTERMFSAE 331
Score = 41.5 bits (97), Expect = 2e-04
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 273 LETLLKELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
+E + EQ + A+DKL +LFG EIL IPGRVSTEVDAR
Sbjct: 59 VEEAIAYGKKLGGPQEEQIKNAIDKLFVLFGAEILKKIPGRVSTEVDAR 107
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt,
transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}
Length = 339
Score = 301 bits (773), Expect = e-102
Identities = 143/249 (57%), Positives = 179/249 (71%), Gaps = 20/249 (8%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
MDK+++ FGT+IL ++PGRVSTEVDARLSFDK A++ KA IK+Y++AG+ KER+LIK+
Sbjct: 86 MDKILVEFGTQILKVVPGRVSTEVDARLSFDKKATVKKALHIIKLYKDAGVPKERVLIKI 145
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
ASTWEGIQAA+ LE ++GIHCN+TLLF+F QAVACAEA VTLISP
Sbjct: 146 ASTWEGIQAARELEVKHGIHCNMTLLFSFTQAVACAEANVTLISPFVGRIMDFYKALSGK 205
Query: 106 -YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELE 164
Y DPGV+SV KIY+YYK+ GY T VM ASFRN E+ ALAG D MT+ LLE+L
Sbjct: 206 DYTAETDPGVLSVKKIYSYYKRHGYATEVMAASFRNLDELKALAGIDNMTLPLNLLEQLY 265
Query: 165 NSTTPVDQMLSEKSAKKANLDKITL--DESAFRWELNEDPMATEKLSDGIRKFAVDSRNE 222
ST P++ L+ +SAK+ ++K++ DE FR+ LNED MATEKLSDGIRKF+ D E
Sbjct: 266 ESTDPIENKLNSESAKEEGVEKVSFINDEPHFRYVLNEDQMATEKLSDGIRKFSADI--E 323
Query: 223 KLTKTFSAK 231
L K K
Sbjct: 324 ALYKLVEEK 332
Score = 41.8 bits (98), Expect = 1e-04
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 285 KNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
K E+ E AMDK+++ FGT+IL ++PGRVSTEVDAR
Sbjct: 76 KTDHEKIENAMDKILVEFGTQILKVVPGRVSTEVDAR 112
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt,
transferase; 1.40A {Escherichia coli} PDB: 3kof_A
1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Length = 337
Score = 294 bits (755), Expect = 3e-99
Identities = 145/248 (58%), Positives = 176/248 (70%), Gaps = 22/248 (8%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
DKL + G EIL ++PGR+STEVDARLS+D +ASIAKAK+ IK+Y +AGI +RILIKL
Sbjct: 94 TDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKL 153
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
ASTW+GI+AA+ LE E GI+CNLTLLF+FAQA ACAEAGV LISP
Sbjct: 154 ASTWQGIRAAEQLEKE-GINCNLTLLFSFAQARACAEAGVFLISPYVGRILDWYKANTDK 212
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI P LL+EL
Sbjct: 213 KEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIAPTLLKEL 272
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
S +++ LS KA + ES F W+ N+DPMA +KL++GIRKFA+D EK
Sbjct: 273 AESEGAIERKLSYTGEVKA--RPARITESEFLWQHNQDPMAVDKLAEGIRKFAIDQ--EK 328
Query: 224 LTKTFSAK 231
L K
Sbjct: 329 LEKMIGDL 336
Score = 39.6 bits (92), Expect = 8e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 273 LETLLKELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
++ + + + A+Q A DKL + G EIL ++PGR+STEVDAR
Sbjct: 72 IDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDAR 120
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural
genomics, PSI-2, protein structure initiative; 2.79A
{Oleispira antarctica}
Length = 329
Score = 291 bits (746), Expect = 6e-98
Identities = 144/248 (58%), Positives = 177/248 (71%), Gaps = 22/248 (8%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
DKL + G E+L IPG +STEVDARLSFD A++AKA+K I++Y++AGID +RILIK+
Sbjct: 82 GDKLAVNIGCEVLTSIPGVISTEVDARLSFDTQATVAKARKLIRLYQDAGIDSDRILIKI 141
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
ASTWEGIQAAK+LE+E GIHCNLTLLF FAQA ACAEAG TLISP
Sbjct: 142 ASTWEGIQAAKILEAE-GIHCNLTLLFHFAQAQACAEAGTTLISPFVGRILDWYKANSGQ 200
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
Y+ +EDPGVVSVT+IYN+YK G+KT+VMGASFRNTGEI LAGCD +TI P+LL +L
Sbjct: 201 SEYSASEDPGVVSVTEIYNFYKSHGFKTIVMGASFRNTGEIEELAGCDRLTISPELLAQL 260
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
E T+P++Q L K + L E++FRW +N DPMA +KL+DGIR+FA D
Sbjct: 261 EADTSPLEQKLFPIKETKDTPEL--LTEASFRWAMNNDPMAHDKLADGIRRFAADQ--VT 316
Query: 224 LTKTFSAK 231
L S K
Sbjct: 317 LESMLSKK 324
Score = 43.8 bits (103), Expect = 4e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 278 KELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
++ KN E DKL + G E+L IPG +STEVDAR
Sbjct: 65 LQIKGNDKNSQTTLENVGDKLAVNIGCEVLTSIPGVISTEVDAR 108
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE;
1.90A {Prochlorococcus marinus str}
Length = 334
Score = 290 bits (743), Expect = 2e-97
Identities = 125/252 (49%), Positives = 165/252 (65%), Gaps = 21/252 (8%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
+D++ + FG EIL II GRVSTEVDARLSFD +A++ KA+K I +Y+ GI+KERILIK+
Sbjct: 78 VDQVSVFFGKEILKIISGRVSTEVDARLSFDTEATVKKARKLINLYKNFGIEKERILIKI 137
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
A+TWEGI+AA++LE E GI CNLTLLF F QAV CA A +TLISP
Sbjct: 138 AATWEGIKAAEILEKE-GIKCNLTLLFNFCQAVTCANANITLISPFVGRILDWHKAKTGK 196
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
+ EDPGV+SVT+IY Y+K+ G+KT VMGASFRN EI LAGCDL+TI PK LEEL
Sbjct: 197 TSFIGAEDPGVISVTQIYKYFKEKGFKTEVMGASFRNLDEIKELAGCDLLTIAPKFLEEL 256
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
+ + + L + ++ +E FR + ED MA+EKLS+GI F+ E+
Sbjct: 257 KREKGVLIRKLDASTKINNSI-DYKFEEKDFRLSMLEDQMASEKLSEGITGFSKAI--EE 313
Query: 224 LTKTFSAKKANL 235
L + + + +
Sbjct: 314 LEELLIERLSEM 325
Score = 41.5 bits (97), Expect = 2e-04
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 278 KELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
+ + + E + +D++ + FG EIL II GRVSTEVDAR
Sbjct: 61 ENTLPNGFSEIELIKETVDQVSVFFGKEILKIISGRVSTEVDAR 104
>3tkf_A Transaldolase; structural genomics, center for structural genomics
of infec diseases, csgid, alpha-beta barrel/TIM barrel;
HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB:
3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Length = 345
Score = 287 bits (735), Expect = 4e-96
Identities = 113/249 (45%), Positives = 157/249 (63%), Gaps = 23/249 (9%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
++++ FG +IL++I G+VS+EVDAR+SF+ +I AK+ I YE GI K+R+LI +
Sbjct: 101 AIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMI 160
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPY-------------- 106
A+TWEGI+AAK+L+ E GI+CNLTL+F AQA ACAEAGV L+SP+
Sbjct: 161 AATWEGIKAAKLLQKE-GINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNL 219
Query: 107 ----APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEE 162
A +D GV SV IY YK G+KT+VMGASFRN +++ALAGCD +TI P LLEE
Sbjct: 220 KTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEE 279
Query: 163 LENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNE 222
L+N ++ L++ + E+ FRW +NE+ MAT KL++GIR F D+
Sbjct: 280 LKNRDEHLEVKLTKNDDVVT--QSPQISEADFRWLMNENAMATHKLAEGIRLFTKDT--I 335
Query: 223 KLTKTFSAK 231
+L
Sbjct: 336 ELENIIKQN 344
Score = 39.6 bits (92), Expect = 8e-04
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 283 KKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
N + + ++++ FG +IL++I G+VS+EVDAR
Sbjct: 89 PDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDAR 127
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente
structural genomics, JCSG, protein structure initiative,
PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Length = 352
Score = 197 bits (502), Expect = 5e-61
Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 66/269 (24%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLA 61
D + E G VS EV L+ D ++ +A++ A I ++ +IK+
Sbjct: 89 DVCLAEH--ESTGGKTGFVSLEVSPELAKDAQGTVEEARRL-----HAAIARKNAMIKVP 141
Query: 62 STWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA-------------- 107
+T GI A + L S+ GI NLTLLF+ AQ + A I+
Sbjct: 142 ATDAGIDALETLVSD-GISVNLTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIQVVAS 200
Query: 108 -----------------PTEDPGVVSVTKIYNYYKKFGY--------------------K 130
+ Y ++++
Sbjct: 201 FFISRVDSALDATLPDRLKGKTAIALAKAAYQDWEQYFTAPEFAALEAQGANRVQLLWAS 260
Query: 131 TVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSAK-KANLDKITL 189
T V ++ +T + +L G + P + L+E + + +A L +I
Sbjct: 261 TGVKNPAYPDTLYVDSLIGVHTVNTVPDATLKAFIDHGTAKATLTESADEARARLAEIA- 319
Query: 190 DESAFRWELNEDPMATEKLSDGIRKFAVD 218
++ + +A DG+++F
Sbjct: 320 -----ALGIDVETLAARLQEDGLKQFEEA 343
Score = 39.0 bits (91), Expect = 0.001
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 10/54 (18%)
Query: 276 LLKELILKKKNIAEQTEA--------AMDKLVILFGTEILNIIPGRVSTEVDAR 321
+ L + + ++ E A D + E G VS EV
Sbjct: 61 EVAALKRQNLSPKQRYETMAVADVRAACDVCLAEH--ESTGGKTGFVSLEVSPE 112
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold,
transferase; 2.10A {Corynebacterium glutamicum}
Length = 360
Score = 196 bits (500), Expect = 1e-60
Identities = 55/277 (19%), Positives = 102/277 (36%), Gaps = 70/277 (25%)
Query: 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAA 70
E N GRVS EVD R+S D+DA++A+AK+ A +D+ ++IK+ +T + A
Sbjct: 96 ESSNGYDGRVSIEVDPRISADRDATLAQAKELW-----AKVDRPNVMIKIPATPGSLPAI 150
Query: 71 KVLESEYGIHCNLTLLFAFAQAVACAEAGV-----------------TLISP-------- 105
+E GI N+TL+F+ A+ A + ++ S
Sbjct: 151 TDALAE-GISVNVTLIFSVARYREVIAAFIEGIKQAAANGHDVSKIHSVASFFVSRVDVE 209
Query: 106 -------------YAPTEDPGVVSVTKIYNYYKKF----------------GYKTVVMGA 136
A GV + + Y YK+ T V
Sbjct: 210 IDKRLEAIGSDEALALRGKAGVANAQRAYAVYKELFDAAELPEGANTQRPLWASTGVKNP 269
Query: 137 SFRNTGEILALAGCD-LMTIGPKLLEELENSTTPVDQMLSEKSAK-KANLDKITLDESAF 194
++ T + LAG + + T+ ++ + LS +A+ A ++
Sbjct: 270 AYAATLYVSELAGPNTVNTMPEGTIDAVLEQGNLHGDTLSNSAAEADAVFSQLE------ 323
Query: 195 RWELNEDPMATEKLSDGIRKFAVDSRNEKLTKTFSAK 231
++ + ++G+ KF +L ++ A+
Sbjct: 324 ALGVDLADVFQVLETEGVDKFVASW--SELLESMEAR 358
Score = 39.8 bits (93), Expect = 7e-04
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 276 LLKELILKKKNIAEQTEAAMDKLV-----ILFGT-EILNIIPGRVSTEVDAR 321
+ EL ++ + A V + G E N GRVS EVD R
Sbjct: 61 QIAELKAAGASVDQAVYAMSIDDVRNACDLFTGIFESSNGYDGRVSIEVDPR 112
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics,
JOI for structural genomics, JCSG; HET: GOL; 2.40A
{Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 104 bits (262), Expect = 6e-27
Identities = 50/161 (31%), Positives = 91/161 (56%), Gaps = 17/161 (10%)
Query: 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAA 70
EI +++ G VS EV + D + + +A++ ++ E ++IK+ T +GI+A
Sbjct: 57 EICDLVKGPVSAEVVSL---DYEGMVREARELAQI-------SEYVVIKIPMTPDGIKAV 106
Query: 71 KVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA----PTEDPGVVSVTKIYNYYKK 126
K L +E GI N+TL+F+ AQA+ A+AG T +SP+ + G+ + +I Y
Sbjct: 107 KTLSAE-GIKTNVTLVFSPAQAILAAKAGATYVSPFVGRMDDLSNDGMRMLGEIVEIYNN 165
Query: 127 FGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 165
+G++T ++ AS R+ ++ AL G D++T+ +LE+L
Sbjct: 166 YGFETEIIAASIRHPMHVVEAALMGVDIVTMPFAVLEKLFK 206
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational
selection, domain swapping transferase; HET: I22; 1.65A
{Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A*
3s1w_A*
Length = 223
Score = 104 bits (261), Expect = 8e-27
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 17/161 (10%)
Query: 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAA 70
EIL I+ G VS EV + + + +A+K + + ++K+ T +G++A
Sbjct: 48 EILKIVDGPVSVEVVST---KYEGMVEEARKIHGL-------GDNAVVKIPMTEDGLRAI 97
Query: 71 KVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA----PTEDPGVVSVTKIYNYYKK 126
K L SE I+ N TL+F QA+ A+AGVT +SP+ + G+ + I +
Sbjct: 98 KTLSSE-HINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNN 156
Query: 127 FGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 165
+ KT ++ AS RN +L A+ G D++T+ +L+ L
Sbjct: 157 YIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMK 197
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A
{Bacillus subtilis}
Length = 212
Score = 103 bits (260), Expect = 9e-27
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAA 70
EI +++ G VS EV + + I + K+ K+ I +K+ T +G++A
Sbjct: 46 EITDVVKGSVSAEVISL---KAEEMIEEGKELAKI-------APNITVKIPMTSDGLKAV 95
Query: 71 KVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA----PTEDPGVVSVTKIYNYYKK 126
+ L GI N+TL+F QA+ A AG T +SP+ G+ ++++ +
Sbjct: 96 RALTDL-GIKTNVTLIFNANQALLAARAGATYVSPFLGRLDDIGHNGLDLISEVKQIFDI 154
Query: 127 FGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 165
G T ++ AS R+ + AL G + T+ K++ L
Sbjct: 155 HGLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIHALTK 195
>1wx0_A Transaldolase; structural genomics, riken structural
genomics/proteomics initiative, RSGI, transferas; 2.27A
{Thermus thermophilus HB8} SCOP: c.1.10.1
Length = 223
Score = 102 bits (257), Expect = 2e-26
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 11 EILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAA 70
I + G VS EV A + +A +A+ ++ + I++KL +T EG++A
Sbjct: 54 AICETVGGPVSAEVTAL---EAEAMVAEGRRLAAI-------HPNIVVKLPTTEEGLKAC 103
Query: 71 KVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA----PTEDPGVVSVTKIYNYYKK 126
K L +E GI N+TL+F+ QA+ A AG + +SP+ G + +I +
Sbjct: 104 KRLSAE-GIKVNMTLIFSANQALLAARAGASYVSPFLGRVDDISWDGGELLREIVEMIQV 162
Query: 127 FGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 165
V+ AS R+ + AL G D+ T+ + ++L
Sbjct: 163 QDLPVKVIAASIRHPRHVTEAALLGADIATMPHAVFKQLLK 203
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain
swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Length = 220
Score = 97.7 bits (244), Expect = 2e-24
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 11 EILNIIP--GRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQ 68
++ + GR+ +V A + + A K + I++K+ T EG+
Sbjct: 45 QLHEAMGGQGRLFAQVMAT---TAEGMVNDALKLRSIIA-------DIVVKVPVTAEGLA 94
Query: 69 AAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTED----PGVVSVTKIYNYY 124
A K+L GI T ++ AQ + A AG ++PY D G+ +VT ++
Sbjct: 95 AIKML-KAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLL 153
Query: 125 KKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 165
K + V+ ASF+ + L LAGC+ +T+ + +++ +
Sbjct: 154 KMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQMIS 196
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 8e-10
Identities = 70/444 (15%), Positives = 131/444 (29%), Gaps = 162/444 (36%)
Query: 6 ILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST-- 63
L G +I + A+L + D ++ K K+ IK Y A I +R K +++
Sbjct: 95 YLEGNDIHALA---------AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 64 WEGIQA--AKV-------------------LESEYG------IHCNLTLLFAFAQAVACA 96
+ + A++ L Y I + L + A
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 97 E----AGVTLIS----P-YAPTED-----PGVVS-----VTKIYNYY---KKFGY----- 129
E G+ ++ P P +D P +S V ++ +Y K G+
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 130 -----------KTVVMGA---------SF-RNTGEILALA---GC------DLMTIGPKL 159
+ +V SF + + + + G ++ P +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 160 LEEL----ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNED-------------- 201
LE+ E +P MLS + + + +++ L
Sbjct: 324 LEDSLENNEGVPSP---MLSISNLTQEQVQDY-VNK--TNSHLPAGKQVEISLVNGAKNL 377
Query: 202 -----PMATEKLSDGIRKFAVDSRNEKLTKTFSAKKANLDKITLDESA-FRWELNEDPMA 255
P + L+ +RK S ++ FS +K L ++ F L A
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP--A 435
Query: 256 TEKL-----SDGIR------KFAV-------DSRKLETLLKELILKKKNIAEQT---EAA 294
++ + + + + V D R L + E I+ I E
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC--IIRLPVKWETT 493
Query: 295 MDKL---VILFGTEILNIIPGRVS 315
++ FG PG S
Sbjct: 494 TQFKATHILDFG-------PGGAS 510
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.84
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 38/95 (40%)
Query: 158 KLLEELENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAV 217
K L+EL+ S E E A + L + ++
Sbjct: 96 KRLQELD-----------AASKVM-------------EQEWREK--AKKDLEEWNQR--- 126
Query: 218 DSRNEKLTKTFSAKKANLDKITLDESAFRWELNED 252
++E++ K K N + AF + + D
Sbjct: 127 --QSEQVEKN---KINNRIA----DKAFYQQPDAD 152
>1gbs_A Australian black SWAN egg white lysozyme; hydrolase (O-glycosyl);
1.50A {Cygnus atratus} SCOP: d.2.1.5 PDB: 1lsp_A* 153l_A
154l_A*
Length = 185
Score = 29.4 bits (66), Expect = 1.0
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 103 ISPYAPTEDPGVVSVTKIYNYYKKFGY 129
+ +D V YYK+ GY
Sbjct: 160 MDIGTTHDDY-ANDVVARAQYYKQHGY 185
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase;
HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A*
2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 30.0 bits (68), Expect = 1.0
Identities = 18/100 (18%), Positives = 25/100 (25%), Gaps = 23/100 (23%)
Query: 14 NIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVL 73
NIIPG VS +D R D +A K +
Sbjct: 308 NIIPGEVSFTLDFR-HPS-DDVLATMLKEAA--------------------AEFDRLIKI 345
Query: 74 ESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYAPTEDPG 113
+ L AV E + +S A +
Sbjct: 346 NDGGALSYESETLQVSP-AVNFHEVCIECVSRSAFAQFKK 384
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.1
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 91 QAVACAEAGVTLISPYAPTEDPGV-VSVT 118
QA+ +A + L YA P + + T
Sbjct: 20 QALKKLQASLKL---YADDSAPALAIKAT 45
Score = 26.8 bits (58), Expect = 6.6
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 204 ATEKLSDGIRKFAVDS 219
A +KL ++ +A DS
Sbjct: 21 ALKKLQASLKLYADDS 36
Score = 26.8 bits (58), Expect = 6.6
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 255 ATEKLSDGIRKFAVDS 270
A +KL ++ +A DS
Sbjct: 21 ALKKLQASLKLYADDS 36
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain,
M20 peptidase family, evolution, residue, dimerization
domain; 2.75A {Bacillus stearothermophilus}
Length = 408
Score = 29.8 bits (68), Expect = 1.1
Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 26/90 (28%)
Query: 14 NIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVL 73
N+IP RV +D R + K I A+ +
Sbjct: 273 NVIPERVEFVLDLR-DLK-AEVRDQVWKAIA-----------------------VRAETI 307
Query: 74 ESEYGIHCNLTLLFAFAQAVACAEAGVTLI 103
E + L V C++
Sbjct: 308 AKERNVRVTTERLQEMP-PVLCSDEVKRAA 336
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin
utilization, structural genomics, PSI, Pro structure
initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP:
c.56.5.4 d.58.19.1 PDB: 2imo_A
Length = 423
Score = 29.4 bits (67), Expect = 1.6
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 26/90 (28%)
Query: 14 NIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVL 73
N++PG+ + +D R D A + + ++ + +
Sbjct: 277 NVVPGKTTFTIDCR-HTD-AAVLRDFTQQLE-----------------------NDMRAI 311
Query: 74 ESEYGIHCNLTLLFAFAQAVACAEAGVTLI 103
E I ++ L V + V +
Sbjct: 312 CDEMDIGIDIDLWMDEE-PVPMNKELVATL 340
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia
pestis}
Length = 407
Score = 27.0 bits (60), Expect = 9.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 39 AKKYIKMYEEAGIDKERILI 58
+K I YE+ GID + ++
Sbjct: 292 GEKAIAHYEKLGIDPMKKVL 311
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,812,017
Number of extensions: 298636
Number of successful extensions: 897
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 59
Length of query: 321
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,077,219
Effective search space: 925528713
Effective search space used: 925528713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)