RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10958
(321 letters)
>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 319
Score = 232 bits (593), Expect = 2e-75
Identities = 159/248 (64%), Positives = 188/248 (75%), Gaps = 19/248 (7%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
+DKL +LFG EIL IPGRVSTEVDARLSFDKDA +A+A++ I++Y+EAG+ K+RILIKL
Sbjct: 72 IDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYKEAGVGKDRILIKL 131
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
+STWEGIQA K LE ++GIHCN+TLLF+FAQAVACAEAGVTLISP
Sbjct: 132 SSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDK 191
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
Y P DPGV SVTKIYNYYKKFGYKT+VMGASFRNTGEI ALAGCD +TI PKLL EL
Sbjct: 192 KSYEPQGDPGVKSVTKIYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGEL 251
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
+ + LS K+A+ ++ +KI LDE AFRW NED MA EKLSDGIRKFA D+ K
Sbjct: 252 LKDNSKLAPALSVKAAQTSDSEKIHLDEKAFRWLHNEDQMAVEKLSDGIRKFAADA--IK 309
Query: 224 LTKTFSAK 231
L + + +
Sbjct: 310 LERMLTER 317
Score = 40.1 bits (93), Expect = 2e-04
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 267 AVDSRKLETLLKELILKKKN----IAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
A + L++E I K EQ + A+DKL +LFG EIL IPGRVSTEVDAR
Sbjct: 40 AAQMPAYQELVEEAIAYGKKLGGPQEEQIKNAIDKLFVLFGAEILKKIPGRVSTEVDAR 98
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}
Length = 316
Score = 221 bits (563), Expect = 5e-71
Identities = 145/248 (58%), Positives = 176/248 (70%), Gaps = 22/248 (8%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKL 60
DKL + G EIL ++PGR+STEVDARLS+D +ASIAKAK+ IK+Y +AGI +RILIKL
Sbjct: 73 TDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKL 132
Query: 61 ASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISP--------------- 105
ASTW+GI+AA+ LE E GI+CNLTLLF+FAQA ACAEAGV LISP
Sbjct: 133 ASTWQGIRAAEQLEKE-GINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKANTDK 191
Query: 106 --YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 163
YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI P LL+EL
Sbjct: 192 KEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIAPALLKEL 251
Query: 164 ENSTTPVDQMLSEKSAKKANLDKITLDESAFRWELNEDPMATEKLSDGIRKFAVDSRNEK 223
S +++ LS KA + ES F W+ N+DPMA +KL++GIRKFA+D EK
Sbjct: 252 AESEGAIERKLSYTGEVKA--RPARITESEFLWQHNQDPMAVDKLAEGIRKFAIDQ--EK 307
Query: 224 LTKTFSAK 231
L K
Sbjct: 308 LEKMIGDL 315
Score = 37.8 bits (87), Expect = 0.001
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 273 LETLLKELILKKKNIAEQTEAAMDKLVILFGTEILNIIPGRVSTEVDAR 321
++ + + + A+Q A DKL + G EIL ++PGR+STEVDAR
Sbjct: 51 IDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDAR 99
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 99.8 bits (248), Expect = 1e-25
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 17/169 (10%)
Query: 4 LVILFGTEILNIIPGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLAST 63
I + G VS EV + + +A +A+ ++ ++ I++KL +T
Sbjct: 47 AFAAHLRAICETVGGPVSAEVT---ALEAEAMVAEGRRLAAIHP-------NIVVKLPTT 96
Query: 64 WEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAEAGVTLISPYA----PTEDPGVVSVTK 119
EG++A K L S GI N+TL+F+ QA+ A AG + +SP+ G + +
Sbjct: 97 EEGLKACKRL-SAEGIKVNMTLIFSANQALLAARAGASYVSPFLGRVDDISWDGGELLRE 155
Query: 120 IYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELENS 166
I + V+ AS R+ + AL G D+ T+ + ++L
Sbjct: 156 IVEMIQVQDLPVKVIAASIRHPRHVTEAALLGADIATMPHAVFKQLLKH 204
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 88.2 bits (218), Expect = 2e-21
Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Query: 38 KAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESEYGIHCNLTLLFAFAQAVACAE 97
+ ++ E E ++IK+ T +GI+A K L S GI N+TL+F+ AQA+ A+
Sbjct: 64 DYEGMVREARELAQISEYVVIKIPMTPDGIKAVKTL-SAEGIKTNVTLVFSPAQAILAAK 122
Query: 98 AGVTLISPY----APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL--ALAGCD 151
AG T +SP+ + G+ + +I Y +G++T ++ AS R+ ++ AL G D
Sbjct: 123 AGATYVSPFVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAASIRHPMHVVEAALMGVD 182
Query: 152 LMTIGPKLLEELEN 165
++T+ +LE+L
Sbjct: 183 IVTMPFAVLEKLFK 196
>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Escherichia coli [TaxId: 562]}
Length = 220
Score = 72.9 bits (178), Expect = 1e-15
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
Query: 17 PGRVSTEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERILIKLASTWEGIQAAKVLESE 76
GR+ +V A + + A K + + I++K+ T EG+ A K+L
Sbjct: 53 QGRLFAQVMATTAEGM---VNDALKLRSIIAD-------IVVKVPVTAEGLAAIKML-KA 101
Query: 77 YGIHCNLTLLFAFAQAVACAEAGVTLISPYA----PTEDPGVVSVTKIYNYYKKFGYKTV 132
GI T ++ AQ + A AG ++PY G+ +VT ++ K +
Sbjct: 102 EGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQAK 161
Query: 133 VMGASFRNTGEIL--ALAGCDLMTIGPKLLEELEN 165
V+ ASF+ + L LAGC+ +T+ + +++ +
Sbjct: 162 VLAASFKTPRQALDCLLAGCESITLPLDVAQQMIS 196
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 29.5 bits (65), Expect = 0.45
Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 10/120 (8%)
Query: 22 TEVDARLSFDKDASIAKAKKYIKMYEEAGIDKERIL--------IKLASTWEGIQAAKVL 73
+ + ++ K + G D + + I+
Sbjct: 146 AQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQ 205
Query: 74 ESEYGIHCNLTLLFAFAQAVACAEAGVTLI--SPYAPTEDPGVVSVTKIYNYYKKFGYKT 131
+++ +HC+ T + EAGV ++ + + + PG + + GY T
Sbjct: 206 KTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESVAEMLEGTGYTT 265
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 28.8 bits (64), Expect = 0.79
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 119 KIYNYYKKFGYKTVVMGASFR-NTGEILALAG 149
+ + K+ G K ++ G SF GEI L G
Sbjct: 4 VVKDLRKRIGKKEILKGISFEIEEGEIFGLIG 35
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
thermophilus [TaxId: 274]}
Length = 271
Score = 27.1 bits (59), Expect = 3.2
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 89 FAQAVACAEAGVTLISPYAPTEDPGVVS--VTKIYNYYKKFGYKTVVMGASFRNTGEILA 146
A V A V +S T + V + K V +G
Sbjct: 160 IATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQ 219
Query: 147 LAGCDLMTIGPKLLEELENSTTPVDQMLSE 176
A D + +G L+ LE + +L E
Sbjct: 220 AAVADGVVVGSALVRALEEG-RSLAPLLQE 248
>d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli
[TaxId: 562]}
Length = 160
Score = 25.6 bits (56), Expect = 6.9
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 148 AGCDLMTIGPKLLEELENSTTPVDQMLSEKS---AKKANLDKITLDESAFRWELNEDPMA 204
A + + +L + S++S K ANL +D + + D A
Sbjct: 14 AAILMFAYMYQAQSDLSIAKFADMNEASKESTTAQKMANL----VDAKIADVQSSSDKNA 69
Query: 205 TEKLSDGIRKFAVDSRNEKLTKTFSAKKANLDK 237
+L D + + D RN+ A L
Sbjct: 70 KAQLPDEVISYINDPRNDITISGIDNINAQLGA 102
>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 170
Score = 25.4 bits (55), Expect = 7.3
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 88 AFAQAVACAEAGVTLISP 105
+ ++ ++ V I P
Sbjct: 145 LLPEKLSQSKRKVIFIGP 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,130,820
Number of extensions: 52896
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 19
Length of query: 321
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,240,546
Effective search space: 292768856
Effective search space used: 292768856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)