Query psy10959
Match_columns 132
No_of_seqs 140 out of 571
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:50:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 1.1E-58 3.7E-63 343.2 7.4 132 1-132 1-136 (136)
2 3nqu_A Histone H3-like centrom 100.0 1.7E-47 5.7E-52 284.1 7.3 109 23-131 23-136 (140)
3 3r45_A Histone H3-like centrom 100.0 2.1E-47 7.1E-52 287.3 6.1 110 22-131 38-152 (156)
4 2yfv_A Histone H3-like centrom 100.0 4E-46 1.4E-50 263.5 6.3 87 42-128 11-100 (100)
5 2hue_B Histone H3; mini beta s 100.0 1.4E-38 4.9E-43 215.4 7.0 77 56-132 1-77 (77)
6 3nqj_A Histone H3-like centrom 100.0 3.9E-38 1.3E-42 215.5 7.1 75 57-131 2-78 (82)
7 2l5a_A Histone H3-like centrom 100.0 1.5E-34 5.1E-39 229.5 7.1 77 55-131 8-87 (235)
8 2ly8_A Budding yeast chaperone 99.9 9.5E-28 3.3E-32 174.4 7.8 73 58-130 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.8 1.3E-21 4.4E-26 128.0 5.1 64 59-127 3-66 (68)
10 1ku5_A HPHA, archaeal histon; 99.8 4.5E-19 1.5E-23 116.8 5.4 64 58-126 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.6 1.3E-16 4.5E-21 110.1 5.6 74 53-129 3-76 (93)
12 1id3_B Histone H4; nucleosome 99.3 2.9E-12 9.8E-17 90.2 5.8 69 57-130 27-95 (102)
13 1tzy_D Histone H4-VI; histone- 99.3 3.6E-12 1.2E-16 89.5 5.7 70 56-130 27-96 (103)
14 2yfw_B Histone H4, H4; cell cy 99.3 3.4E-12 1.1E-16 89.8 5.4 68 58-130 29-96 (103)
15 2hue_C Histone H4; mini beta s 99.3 2.7E-12 9.1E-17 87.2 4.1 70 56-130 8-77 (84)
16 3b0c_T CENP-T, centromere prot 99.2 3.6E-11 1.2E-15 85.7 7.1 70 56-130 5-74 (111)
17 1f1e_A Histone fold protein; a 99.2 1.9E-11 6.5E-16 91.7 5.6 69 54-127 78-146 (154)
18 3b0c_W CENP-W, centromere prot 99.2 3.3E-11 1.1E-15 80.3 5.7 66 58-127 4-69 (76)
19 2nqb_D Histone H2B; nucleosome 99.2 5.8E-11 2E-15 86.1 7.1 69 60-128 31-99 (123)
20 1tzy_B Histone H2B; histone-fo 99.2 6.1E-11 2.1E-15 86.3 7.1 69 60-128 34-102 (126)
21 1taf_B TFIID TBP associated fa 99.1 1.3E-10 4.6E-15 76.8 5.7 65 58-127 6-70 (70)
22 1taf_A TFIID TBP associated fa 99.0 4.8E-10 1.6E-14 73.8 6.8 62 66-128 5-66 (68)
23 1f1e_A Histone fold protein; a 99.0 2E-10 6.9E-15 86.2 5.3 68 59-130 5-72 (154)
24 3v9r_A MHF1, uncharacterized p 98.9 1.7E-09 5.9E-14 74.6 6.2 66 61-126 11-78 (90)
25 4dra_A Centromere protein S; D 98.9 2E-09 6.8E-14 77.1 6.5 62 63-126 32-93 (113)
26 3b0b_B CENP-S, centromere prot 98.9 3E-09 1E-13 75.5 5.6 62 64-127 25-86 (107)
27 2byk_B Chrac-14; nucleosome sl 98.8 6.5E-09 2.2E-13 75.6 6.9 72 55-129 6-77 (128)
28 1jfi_B DR1 protein, transcript 98.8 5.1E-09 1.8E-13 80.2 6.4 73 53-129 10-82 (179)
29 3vh5_A CENP-S; histone fold, c 98.8 7.6E-09 2.6E-13 76.5 6.2 67 61-127 18-86 (140)
30 2jss_A Chimera of histone H2B. 98.7 3.2E-08 1.1E-12 76.1 7.8 69 60-128 1-69 (192)
31 1n1j_B NF-YC; histone-like PAI 98.6 8.4E-08 2.9E-12 66.4 6.4 80 45-126 4-83 (97)
32 4g92_C HAPE; transcription fac 98.5 2.9E-07 9.9E-12 66.0 6.3 68 58-126 38-105 (119)
33 2l5a_A Histone H3-like centrom 98.3 1.8E-06 6.1E-11 68.5 7.3 54 77-130 175-228 (235)
34 2f8n_G Core histone macro-H2A. 98.3 1.6E-06 5.4E-11 62.4 6.0 67 56-126 20-86 (120)
35 2nqb_C Histone H2A; nucleosome 98.2 1.6E-06 5.4E-11 62.7 5.5 67 56-126 21-87 (123)
36 1jfi_A Transcription regulator 98.2 1.4E-06 4.8E-11 60.4 4.9 65 61-126 11-75 (98)
37 1tzy_A Histone H2A-IV; histone 98.2 2E-06 6.7E-11 62.7 5.5 67 56-126 23-89 (129)
38 1h3o_B Transcription initiatio 98.1 6.3E-06 2.2E-10 55.1 6.7 65 58-126 5-69 (76)
39 2f8n_K Histone H2A type 1; nuc 98.1 2.4E-06 8.1E-11 63.7 5.0 67 56-126 42-108 (149)
40 1f66_C Histone H2A.Z; nucleoso 98.1 3.1E-06 1E-10 61.5 4.9 68 56-126 25-92 (128)
41 1id3_C Histone H2A.1; nucleoso 98.1 2.4E-06 8.3E-11 62.3 4.1 67 56-126 23-89 (131)
42 2byk_A Chrac-16; nucleosome sl 97.9 1.8E-05 6E-10 58.3 5.1 66 60-126 18-84 (140)
43 2jss_A Chimera of histone H2B. 97.9 1.2E-05 4E-10 61.8 4.2 68 56-126 103-170 (192)
44 2r10_A Chromatin structure-rem 97.6 7.8E-06 2.7E-10 67.8 -0.1 45 3-47 3-51 (361)
45 3a1b_A DNA (cytosine-5)-methyl 91.8 0.034 1.2E-06 41.6 0.2 21 2-22 1-21 (159)
46 3avr_B Histone H3; cupin super 91.3 0.08 2.7E-06 27.5 1.3 23 19-41 2-24 (26)
47 4dra_E Centromere protein X; D 87.5 2.3 8E-05 28.4 6.6 64 56-122 10-74 (84)
48 1r4v_A Hypothetical protein AQ 86.3 0.93 3.2E-05 34.1 4.6 71 51-126 17-89 (171)
49 3b0b_C CENP-X, centromere prot 85.9 2.6 8.7E-05 27.9 6.1 62 58-122 8-70 (81)
50 1wwi_A Hypothetical protein TT 82.8 1.6 5.5E-05 32.1 4.4 64 58-126 2-65 (148)
51 2ly8_A Budding yeast chaperone 75.3 2.6 9E-05 29.9 3.4 30 77-106 61-90 (121)
52 3ksy_A SOS-1, SON of sevenless 72.8 6.8 0.00023 36.2 6.4 66 56-126 102-167 (1049)
53 3uk6_A RUVB-like 2; hexameric 68.0 19 0.00066 27.7 7.3 51 77-127 275-329 (368)
54 2x4w_B Histone H3.2; transcrip 65.6 2.7 9.4E-05 21.2 1.3 15 27-41 5-19 (26)
55 3k1j_A LON protease, ATP-depen 61.7 31 0.0011 29.4 8.0 62 66-127 297-374 (604)
56 1g8p_A Magnesium-chelatase 38 60.2 27 0.00092 26.5 6.7 51 77-127 264-321 (350)
57 3kw6_A 26S protease regulatory 58.3 4.8 0.00017 25.1 1.8 32 95-126 40-71 (78)
58 1h3o_A Transcription initiatio 58.0 11 0.00037 24.6 3.5 52 58-110 2-53 (75)
59 3v9r_B MHF2, uncharacterized p 49.9 11 0.00036 25.5 2.4 60 59-125 2-73 (88)
60 3vlf_B 26S protease regulatory 49.0 6.6 0.00023 25.3 1.3 31 96-126 39-69 (88)
61 2v1u_A Cell division control p 37.3 98 0.0034 23.3 6.6 49 78-126 220-274 (387)
62 1bh9_B TAFII28; histone fold, 35.8 93 0.0032 20.4 6.6 64 59-127 17-81 (89)
63 2dzn_B 26S protease regulatory 35.1 33 0.0011 21.4 3.0 30 97-126 37-66 (82)
64 3bos_A Putative DNA replicatio 32.5 1E+02 0.0035 21.4 5.7 48 77-125 190-240 (242)
65 2qby_A CDC6 homolog 1, cell di 32.0 1.6E+02 0.0055 22.0 7.8 48 78-125 216-269 (386)
66 2chg_A Replication factor C sm 31.8 1.1E+02 0.0036 20.7 5.5 47 78-126 178-224 (226)
67 2c9o_A RUVB-like 1; hexameric 31.4 97 0.0033 25.1 6.0 52 77-128 382-437 (456)
68 1ixz_A ATP-dependent metallopr 31.0 39 0.0013 24.7 3.2 55 70-124 193-252 (254)
69 2eqb_B RAB guanine nucleotide 28.7 57 0.0019 22.1 3.5 31 84-114 47-77 (97)
70 1njg_A DNA polymerase III subu 28.6 92 0.0032 21.2 4.8 48 77-125 201-248 (250)
71 3aji_B S6C, proteasome (prosom 28.5 43 0.0015 20.6 2.7 32 95-126 38-69 (83)
72 2krk_A 26S protease regulatory 28.3 49 0.0017 21.0 3.0 30 97-126 50-79 (86)
73 1lv7_A FTSH; alpha/beta domain 26.4 48 0.0017 24.2 3.1 58 69-126 188-250 (257)
74 3qb5_K Translin-associated pro 26.1 94 0.0032 24.5 4.9 35 67-101 100-136 (290)
75 1jr3_D DNA polymerase III, del 25.3 91 0.0031 23.9 4.6 62 64-127 147-208 (343)
76 2kru_A Light-independent proto 23.2 70 0.0024 20.0 2.9 49 78-127 3-52 (63)
77 2dsy_A Hypothetical protein TT 23.1 79 0.0027 20.2 3.3 22 83-104 47-68 (87)
78 4b4t_I 26S protease regulatory 22.2 68 0.0023 27.0 3.4 32 95-126 390-421 (437)
79 1iy2_A ATP-dependent metallopr 21.9 70 0.0024 23.8 3.2 56 69-124 216-276 (278)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=1.1e-58 Score=343.17 Aligned_cols=132 Identities=97% Similarity=1.301 Sum_probs=89.6
Q ss_pred CCCccccccccCCCCCCcchhhhhhhccCCCCCCCCCCccc----cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhh
Q psy10959 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 76 (132)
Q Consensus 1 Martk~~a~k~~~~kap~k~~~~~~~~~~~p~~~~~~~~~r----~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~ 76 (132)
||||||++++++||++|+|++++++++++.|.++++++|+| +++|+|||+||+||+||||++||+||||||+++|.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988887 99999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcccC
Q psy10959 77 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 132 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~~ 132 (132)
+++|||++|+++|||++|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=1.7e-47 Score=284.07 Aligned_cols=109 Identities=55% Similarity=0.806 Sum_probs=72.9
Q ss_pred hhhhccCCCCCCCCCCccc---cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHHHHH
Q psy10959 23 TKAARKSAPSTGGVKKPHR---TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYL 97 (132)
Q Consensus 23 ~~~~~~~~p~~~~~~~~~r---~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~l 97 (132)
.+++++++|.+|+++++++ .-+|+|||+||+||+|||||+||+||||||+++|. .++|||++|+++|||++|+||
T Consensus 23 ~~aa~~~~~~~g~~~~~~~r~rpg~LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayL 102 (140)
T 3nqu_A 23 TPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFL 102 (140)
T ss_dssp ------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCccHHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHH
Confidence 3567888898888887765 22399999999999999999999999999999997 589999999999999999999
Q ss_pred HHHHHhHHHHhhhcCccccCcccHHHHHHHhccc
Q psy10959 98 VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 131 (132)
Q Consensus 98 v~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~ 131 (132)
|+||||+|+||+||||||||++|||||++|||++
T Consensus 103 v~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 103 VHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999975
No 3
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.1e-47 Score=287.28 Aligned_cols=110 Identities=55% Similarity=0.800 Sum_probs=74.1
Q ss_pred hhhhhccCCCCCCCCCCccc---cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHHHH
Q psy10959 22 ATKAARKSAPSTGGVKKPHR---TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAY 96 (132)
Q Consensus 22 ~~~~~~~~~p~~~~~~~~~r---~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~ 96 (132)
+++++++++|.+|+++++++ .-+|+|||+||+||+|||||+||+||||||+++|. .++|||++|+++|||++|+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEay 117 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF 117 (156)
T ss_dssp -------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHH
Confidence 56678889999999887754 23399999999999999999999999999999997 58999999999999999999
Q ss_pred HHHHHHhHHHHhhhcCccccCcccHHHHHHHhccc
Q psy10959 97 LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 131 (132)
Q Consensus 97 lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~ 131 (132)
||.||||||+||+||||||||++|||||++|||++
T Consensus 118 LV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 118 LVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999974
No 4
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=4e-46 Score=263.45 Aligned_cols=87 Identities=69% Similarity=1.007 Sum_probs=67.0
Q ss_pred cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhhc---cccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCc
Q psy10959 42 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 118 (132)
Q Consensus 42 ~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~ 118 (132)
+++|+|||+||+||+|||||+||+||||||++++.+ ++|||++|+++|||++|+|||+||||+|+||+||||||||+
T Consensus 11 t~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~ 90 (100)
T 2yfv_A 11 DLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMR 90 (100)
T ss_dssp -----------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred chHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCH
Confidence 999999999999999999999999999999999976 89999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHh
Q psy10959 119 KDIQLARRIR 128 (132)
Q Consensus 119 kDi~La~rir 128 (132)
+|||||++||
T Consensus 91 kDiqLa~rir 100 (100)
T 2yfv_A 91 KDMQLARRIR 100 (100)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhC
Confidence 9999999986
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=1.4e-38 Score=215.44 Aligned_cols=77 Identities=92% Similarity=1.255 Sum_probs=73.9
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcccC
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 132 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~~ 132 (132)
+|||||+||+||||||++++++++|||++|+.+|||++|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999863
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-38 Score=215.52 Aligned_cols=75 Identities=63% Similarity=0.939 Sum_probs=71.6
Q ss_pred hhhhcchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhccc
Q psy10959 57 LLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 131 (132)
Q Consensus 57 llipk~pF~RlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~ 131 (132)
|||||+||+||||||+++++ .++|||++|+.+|||++|+|||+||||+|+||+||||||||++|||||+||||++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 68999999999999999998 6899999999999999999999999999999999999999999999999999985
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=229.49 Aligned_cols=77 Identities=70% Similarity=1.013 Sum_probs=72.3
Q ss_pred hhhhhhcchhHHHHHHHHhhhhc---cccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhccc
Q psy10959 55 TELLIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 131 (132)
Q Consensus 55 t~llipk~pF~RlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~ 131 (132)
..+||||+||+||||||+++|.+ ++|||++||.|||||+|+|||+||||+|+||+||||||||++|||||++|||++
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 46999999999999999999975 899999999999999999999999999999999999999999999999999975
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.5e-28 Score=174.37 Aligned_cols=73 Identities=60% Similarity=0.867 Sum_probs=69.3
Q ss_pred hhhcchhHHHHHHHHhhhhc---cccccHHHHHHHHHHHHHHHHHHHHhHHHHhhh------------------------
Q psy10959 58 LIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIH------------------------ 110 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~H------------------------ 110 (132)
||||+||+||||||++++.+ ++|||++|+.+|||++|+|||+||||+|+||+|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 69999999999999999987 899999999999999999999999999999986
Q ss_pred --------------cCccccCcccHHHHHHHhcc
Q psy10959 111 --------------AKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 111 --------------akRvTi~~kDi~La~rirg~ 130 (132)
|+|+||+..||.+|.+-.|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 58999999999999998885
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.84 E-value=1.3e-21 Score=128.02 Aligned_cols=64 Identities=28% Similarity=0.313 Sum_probs=61.7
Q ss_pred hhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 59 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 59 ipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
||++||.||+|++ ++.||+.+|+.+||+++|.|++.||++||.||.|+||+||+++||++|++.
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7999999999999 689999999999999999999999999999999999999999999999764
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.76 E-value=4.5e-19 Score=116.78 Aligned_cols=64 Identities=30% Similarity=0.346 Sum_probs=61.4
Q ss_pred hhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 58 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
-||++||.||+|++ +..||+++|+++|||++|.|+..+++||+.+|.|+||+||+++||+||.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 38999999999997 78999999999999999999999999999999999999999999999974
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.65 E-value=1.3e-16 Score=110.08 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=65.2
Q ss_pred cchhhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhc
Q psy10959 53 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129 (132)
Q Consensus 53 kst~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg 129 (132)
+++++.||+++|.|++|++.. ++.+|+.+|..+||+++|.|+..|+++|+.+|.|++|+||+.+||..|++-.|
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 76 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 456889999999999999943 46899999999999999999999999999999999999999999999987443
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.30 E-value=2.9e-12 Score=90.17 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=64.9
Q ss_pred hhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcc
Q psy10959 57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 57 llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~ 130 (132)
--||+.|..||++.. +..|++.+|.++|++++|.|+..+.+||+.+|.|++|.||+..||.+|++-.|+
T Consensus 27 ~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 27 QGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp GGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 349999999999887 779999999999999999999999999999999999999999999999998775
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.29 E-value=3.6e-12 Score=89.52 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=64.7
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcc
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~ 130 (132)
.--||+.+..||.+.. +..|++.+|.++|++..|.|+..+.+||..+|.|++|.||+++||.+|.+-.|+
T Consensus 27 ~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 27 IQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp GGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 3349999999999877 567999999999999999999999999999999999999999999999998775
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.28 E-value=3.4e-12 Score=89.76 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=63.0
Q ss_pred hhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcc
Q psy10959 58 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~ 130 (132)
-||+.+..||.+.. +..|++.+|.++|+++.|.|+..+.+||..+|.|++|.||+++||.+|.+-.|+
T Consensus 29 gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 29 GITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp -CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 39999999999876 568999999999999999999999999999999999999999999999998775
No 15
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.27 E-value=2.7e-12 Score=87.23 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=65.0
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcc
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~ 130 (132)
.--||+.+..||.+.. +..|++.+|.++|++..|.|+..+.+||..++.|++|.||+..||.+|.+-.|+
T Consensus 8 ~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 8 IQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp CCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred CCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 3349999999999887 779999999999999999999999999999999999999999999999987765
No 16
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.20 E-value=3.6e-11 Score=85.70 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=61.6
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcc
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~ 130 (132)
++-||+....||+++. +..|++.++.++|+++++.|+..+..||+..|.||||.||+.+||.++.+-.|.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 5669999999998888 789999999999999999999999999999999999999999999999987664
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.19 E-value=1.9e-11 Score=91.75 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=65.3
Q ss_pred chhhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 54 STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 54 st~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
.-++.||++|..||+|+. +..|++.+|.++|+++.|.|+..+.++|+..|.|++|+||+++||++|.+.
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 457789999999999998 789999999999999999999999999999999999999999999999865
No 18
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.18 E-value=3.3e-11 Score=80.29 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=61.8
Q ss_pred hhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 58 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
.+|+++..|+++++. ++.+++.+|.++|++++|.|+..|..+|+..|.|.+|.||+.+||+.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 489999999999874 478999999999999999999999999999999999999999999999875
No 19
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.17 E-value=5.8e-11 Score=86.11 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=66.4
Q ss_pred hcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHh
Q psy10959 60 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 60 pk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rir 128 (132)
++..|..+|+.|+.++++|.+++++|+..|...++|++..+..+|..++.|++|.||+.+|||.|++|.
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999999999999999999999999985
No 20
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.16 E-value=6.1e-11 Score=86.33 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=66.7
Q ss_pred hcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHh
Q psy10959 60 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 60 pk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rir 128 (132)
++..|..+|+.|+.++++|.++++.|+..|...++|++..+..+|..++.|++|.||+.+|||.|++|.
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 677899999999999999999999999999999999999999999999999999999999999999985
No 21
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.09 E-value=1.3e-10 Score=76.83 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=60.6
Q ss_pred hhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 58 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
.+|..|+.++...+ +-.+++.+|..+|-+-+|.++-.+.++|..++.|+||.||+..||.+|.++
T Consensus 6 ~lp~~~v~~iaes~-----Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 6 SISAESMKVIAESI-----GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp CCCHHHHHHHHHHT-----TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 48999999998888 778999999999999999999999999999999999999999999999753
No 22
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.05 E-value=4.8e-10 Score=73.77 Aligned_cols=62 Identities=21% Similarity=0.421 Sum_probs=54.0
Q ss_pred HHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHh
Q psy10959 66 RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 66 RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rir 128 (132)
++|..|+.+. +..++++++...|-|++|.|...+++||..+|.||+|.||+.+||+||...+
T Consensus 5 ~~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 3444444432 5679999999999999999999999999999999999999999999998865
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.04 E-value=2e-10 Score=86.17 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=63.3
Q ss_pred hhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcc
Q psy10959 59 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 59 ipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~ 130 (132)
+|++|..||+|+.+ ++.|++.+|-++|++++|.|+..+..+|+..|.|+||.||+++||..+..-+|-
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~ 72 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 72 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 79999999999885 569999999999999999999999999999999999999999999999876653
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.7e-09 Score=74.61 Aligned_cols=66 Identities=26% Similarity=0.201 Sum_probs=55.6
Q ss_pred cchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 61 KLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 61 k~pF~RlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
|+.+.--|-.|+++.. .+..++++++.+|-|.+|.|+..+.+|+...|.||||.||+++||.|+.|
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4445555555655542 24789999999999999999999999999999999999999999999965
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.92 E-value=2e-09 Score=77.11 Aligned_cols=62 Identities=31% Similarity=0.422 Sum_probs=53.6
Q ss_pred hhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 63 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 63 pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
...|+|++...+ .+..++++++.+|-|+++.|+..+..|+...|.||||.||+++||.|+.|
T Consensus 32 ~V~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 32 TVGCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 345666666432 25669999999999999999999999999999999999999999999975
No 26
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.86 E-value=3e-09 Score=75.50 Aligned_cols=62 Identities=26% Similarity=0.351 Sum_probs=53.1
Q ss_pred hHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 64 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 64 F~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
..|++++... ..+.+++++++.+|-|.++.|+..+..|+...|.||||.||+.+||.|+.|-
T Consensus 25 V~rI~~~~g~--~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 25 TGCLCQDVAE--DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHH--HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHhh--hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 4455555533 2357999999999999999999999999999999999999999999999763
No 27
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.84 E-value=6.5e-09 Score=75.60 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=62.2
Q ss_pred hhhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhc
Q psy10959 55 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129 (132)
Q Consensus 55 t~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg 129 (132)
.++.+|.++..|++++... ...+++.+|..+|++++|.|+..|...|+..+.|.+|.||+.+||..|+.-.|
T Consensus 6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 3677999999999998843 57899999999999999999999999999999999999999999999987654
No 28
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.83 E-value=5.1e-09 Score=80.22 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=65.8
Q ss_pred cchhhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhc
Q psy10959 53 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129 (132)
Q Consensus 53 kst~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg 129 (132)
...++.+|+++..||+++++. +.+++.+|.++|+++++.|+..|...|+..+.|.+|.||+.+||..|..-.|
T Consensus 10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 345788999999999999953 6999999999999999999999999999999999999999999999987554
No 29
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.80 E-value=7.6e-09 Score=76.45 Aligned_cols=67 Identities=25% Similarity=0.335 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHhhh--hccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 61 KLPFQRLVREIAQDF--KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 61 k~pF~RlVreI~~~~--~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
|+...--|-.|+++. ..+..|+++++.+|-+++|.|+..+..|+...|.||||.||+.+||.|+.|-
T Consensus 18 KaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 334444455555544 2468899999999999999999999999999999999999999999999763
No 30
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.72 E-value=3.2e-08 Score=76.11 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=65.5
Q ss_pred hcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHh
Q psy10959 60 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 60 pk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rir 128 (132)
++..|..+++.|+.+++++.+++.+|+..|....++++..|..+|..++.|++|.||+++|||.+.++-
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 356799999999999999999999999999999999999999999999999999999999999999874
No 31
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.61 E-value=8.4e-08 Score=66.40 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=54.3
Q ss_pred hhhHHhhhcchhhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHH
Q psy10959 45 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124 (132)
Q Consensus 45 lrEIr~~Qkst~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La 124 (132)
+.||+..- ..+.=-..+|..|+ +.|++.-....+++.+|..+|..++|.|+..|.+.|+.+|.+.+|.||+.+||.+|
T Consensus 4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 45666531 11222344555554 44545444446999999999999999999999999999999999999999999999
Q ss_pred HH
Q psy10959 125 RR 126 (132)
Q Consensus 125 ~r 126 (132)
.+
T Consensus 82 v~ 83 (97)
T 1n1j_B 82 IT 83 (97)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.47 E-value=2.9e-07 Score=65.96 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=61.0
Q ss_pred hhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 58 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
=.+.+|..| |+.|++.-....+++.+|..+|..++|.|+..|.+.|+.+|...+|.||+++||..|..
T Consensus 38 k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 38 KIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp SCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred ccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 356789988 57787765667899999999999999999999999999999999999999999999974
No 33
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.8e-06 Score=68.53 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=51.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcc
Q psy10959 77 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~ 130 (132)
+.-|++.++.+.+.++.|.|+..+..||+.+|-||+|.||++.||.+|.+..|.
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 778999999999999999999999999999999999999999999999988764
No 34
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.26 E-value=1.6e-06 Score=62.40 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=61.4
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+...++|.|...|.|+++.+|+++||++|.+
T Consensus 20 gLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 5678999999999886 125699999999999999999999999999999999999999999999986
No 35
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.23 E-value=1.6e-06 Score=62.66 Aligned_cols=67 Identities=25% Similarity=0.228 Sum_probs=61.1
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+...++|.|...|.|+++.+|+++||+||.+
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 5678999999998775 245699999999999999999999999999999999999999999999986
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.22 E-value=1.4e-06 Score=60.36 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=51.2
Q ss_pred cchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 61 KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 61 k~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
.+|..|+ +.|++.-....+++.+|...|-.++|.|+..|.+.|+.+|.+.+|.||+++||+++.+
T Consensus 11 ~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 11 RFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred CCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 3455554 4454543344699999999999999999999999999999999999999999998864
No 37
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.20 E-value=2e-06 Score=62.65 Aligned_cols=67 Identities=25% Similarity=0.224 Sum_probs=61.2
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+...++|.|...|.|+++.+|+++||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 5678999999998774 245699999999999999999999999999999999999999999999986
No 38
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.15 E-value=6.3e-06 Score=55.07 Aligned_cols=65 Identities=23% Similarity=0.323 Sum_probs=59.2
Q ss_pred hhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 58 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+++|--.+.||++| .+...+.+++-+.|.+.|++|+.+..+.|..+|.|-+--||.++|+||...
T Consensus 5 vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 5 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 45777788888888 467899999999999999999999999999999999999999999999864
No 39
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.14 E-value=2.4e-06 Score=63.69 Aligned_cols=67 Identities=25% Similarity=0.228 Sum_probs=61.2
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+...++|.|...|.|+++.+|+++||+||.+
T Consensus 42 gLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 6778999999998765 245699999999999999999999999999999999999999999999986
No 40
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.11 E-value=3.1e-06 Score=61.54 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=60.7
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+|.+|-.+|.|++++-.. ...|++.+|-..|-.+.|.+...++|.|...|.|+++.+|+++||+||.+
T Consensus 25 gLqfPV~ri~R~Lk~~~~---a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTT---SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp TCSSCHHHHHHHHHHTSC---SSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHHccc---chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 567899999999877610 13599999999999999999999999999999999999999999999976
No 41
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.09 E-value=2.4e-06 Score=62.30 Aligned_cols=67 Identities=27% Similarity=0.239 Sum_probs=60.6
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+...++|.|...|.|+++.+|+++||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 5668999999988764 245699999999999999999999999999999999999999999999986
No 42
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.86 E-value=1.8e-05 Score=58.29 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=50.3
Q ss_pred hcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHh-hhcCccccCcccHHHHHH
Q psy10959 60 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 60 pk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a-~HakRvTi~~kDi~La~r 126 (132)
..+|..|+ +.|++.-....+++.+|..++..|+|-|+..|.+.|+.+| ...+|.||+.+||..|+.
T Consensus 18 ~~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 18 TFLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 45566664 6666654455789999999999999999999999999999 999999999999999985
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.85 E-value=1.2e-05 Score=61.75 Aligned_cols=68 Identities=25% Similarity=0.175 Sum_probs=60.9
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+|.+|-.++.|++++-. ....|++.+|...|-.+.|.+...++|.|...|.|+++.+|+++||++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 67889999999987741 123699999999999999999999999999999999999999999999976
No 44
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=97.61 E-value=7.8e-06 Score=67.77 Aligned_cols=45 Identities=40% Similarity=0.458 Sum_probs=6.0
Q ss_pred CccccccccCCCCCCcchhhhhhhccCCCCCCCCCCccc----cchhhh
Q psy10959 3 RTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALRE 47 (132)
Q Consensus 3 rtk~~a~k~~~~kap~k~~~~~~~~~~~p~~~~~~~~~r----~~alrE 47 (132)
||||+|++++||++|++++++++++++.|.++++++|+| ++++.|
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e 51 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQ 51 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCC
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCcccccc
Confidence 799999999999999999999988888777888888777 666555
No 45
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=91.80 E-value=0.034 Score=41.58 Aligned_cols=21 Identities=95% Similarity=1.164 Sum_probs=12.5
Q ss_pred CCccccccccCCCCCCcchhh
Q psy10959 2 ARTKQTARKSTGGKAPRKQLA 22 (132)
Q Consensus 2 artk~~a~k~~~~kap~k~~~ 22 (132)
|||||+|+|++|+|++.+++.
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~r 21 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQLR 21 (159)
T ss_dssp CEEEECCCC-------CHHHH
T ss_pred CccccccccccCCCcchHHHH
Confidence 799999999999999998873
No 46
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=91.30 E-value=0.08 Score=27.52 Aligned_cols=23 Identities=83% Similarity=1.044 Sum_probs=17.2
Q ss_pred chhhhhhhccCCCCCCCCCCccc
Q psy10959 19 KQLATKAARKSAPSTGGVKKPHR 41 (132)
Q Consensus 19 k~~~~~~~~~~~p~~~~~~~~~r 41 (132)
+++++++++++.|..+++++++|
T Consensus 2 K~la~Kaarks~p~~~g~kk~hR 24 (26)
T 3avr_B 2 KQLATKAARXSAPATGGVKKPXX 24 (26)
T ss_pred cccccccccCCCCCCccccccCC
Confidence 56677777777777888888775
No 47
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=87.47 E-value=2.3 Score=28.37 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=46.5
Q ss_pred hhhhhcchhHHHHHHHHhhhh-ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHH
Q psy10959 56 ELLIRKLPFQRLVREIAQDFK-TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 122 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~-~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~ 122 (132)
+..||+.-..||++ ..|. ..+|++.+|+..+.+..+-|...-+.-|+.-|---+-.+|.++|++
T Consensus 10 ~~~i~~~li~ril~---~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LE 74 (84)
T 4dra_E 10 GSGFRKELVSRLLH---LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLE 74 (84)
T ss_dssp -CCCCHHHHHHHHH---TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred CCCCCHHHHHHHHH---HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 33466655555555 2243 6799999999999999999888877777766655556678888886
No 48
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=86.30 E-value=0.93 Score=34.13 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=59.3
Q ss_pred hhcchhh--hhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 51 YQKSTEL--LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 51 ~Qkst~l--lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
|.+-.+. +|+-.-|.+|.|+. .++-+..+-+.-+-+.+|.-+-.||.-|...|...+|-.|.+.|+-+-..
T Consensus 17 ~~~~~~Mm~vmg~~kferlFR~a-----agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKG 89 (171)
T 1r4v_A 17 YSKIETMLRPKGFDKLDHYFRTE-----LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKA 89 (171)
T ss_dssp ----CCTTSCTTHHHHHHHHHHH-----HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 4444455 78888999999998 46778899999999999999999999999999999999999999865443
No 49
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=85.90 E-value=2.6 Score=27.89 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=45.5
Q ss_pred hhhcchhHHHHHHHHhhhh-ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHH
Q psy10959 58 LIRKLPFQRLVREIAQDFK-TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 122 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~-~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~ 122 (132)
.||..-..||.++. |. ...|++++|+.++.+..+-|...-+.-|..-|.--+-..|.++|++
T Consensus 8 ~~~~~lI~ril~~~---f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LE 70 (81)
T 3b0b_C 8 GFRKETVERLLRLH---FRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVE 70 (81)
T ss_dssp CCCHHHHHHHHHHH---CCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred CCCHHHHHHHHHHH---hccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHH
Confidence 35555555555543 33 6789999999999999998888888777776654555678888876
No 50
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=82.83 E-value=1.6 Score=32.12 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=54.5
Q ss_pred hhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 58 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+|+-.-|.++.|+. .++-+..+-+.-+-+.+|.-+-.||.-|...|...+|-.|.+.|+-+-..
T Consensus 2 vm~~~~~e~lFR~a-----a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkG 65 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-----AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKG 65 (148)
T ss_dssp CSCHHHHHHHHHHH-----HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHH
T ss_pred cCCHHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 35566789999988 45677788888999999999999999999999999999999999865443
No 51
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=75.26 E-value=2.6 Score=29.91 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=27.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10959 77 TDLRFQSAAIGALQEASEAYLVGLFEDTNL 106 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~ 106 (132)
+.-|++.++.+.+.++.|.|+..+..||+.
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav~ 90 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVT 90 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999864
No 52
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=72.76 E-value=6.8 Score=36.18 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=54.6
Q ss_pred hhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+|.+|---..|+++.. ...|+...|-.-|--+.|.....++|-|...+...++..|+++|+++|.+
T Consensus 102 ~l~~pv~~~~~~l~~~-----~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEV-----LGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCSSCHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CccccHHHHHHHhhcc-----cccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 4555555566665333 34699999999999999999999999999999999999999999999974
No 53
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=68.00 E-value=19 Score=27.72 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=44.8
Q ss_pred ccccccHHHHHHHHHHHH----HHHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 77 TDLRFQSAAIGALQEASE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaaE----~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
.+..|+.+++..|.+.++ .++..+++.|...|.-.++.+|+.+|++-+...
T Consensus 275 ~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 275 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 457799999999999998 388899999999998899999999999988765
No 54
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=65.62 E-value=2.7 Score=21.18 Aligned_cols=15 Identities=87% Similarity=1.356 Sum_probs=9.0
Q ss_pred ccCCCCCCCCCCccc
Q psy10959 27 RKSAPSTGGVKKPHR 41 (132)
Q Consensus 27 ~~~~p~~~~~~~~~r 41 (132)
+++.|.+++.++++|
T Consensus 5 rk~~p~~~~~kk~~R 19 (26)
T 2x4w_B 5 RKSAPATGGVXKPHR 19 (26)
T ss_pred ccCCCCCCccccccc
Confidence 445566666666665
No 55
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=61.66 E-value=31 Score=29.36 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=47.5
Q ss_pred HHHHHHHhhhh---ccccccHHHHHHHHHHH-------------HHHHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 66 RLVREIAQDFK---TDLRFQSAAIGALQEAS-------------EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 66 RlVreI~~~~~---~~~r~~~~Al~aLQeaa-------------E~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
.+++.+.+.+. ....|+.+|+..|.+.+ ...|..+.+.|...|...++..|+.+|++-|...
T Consensus 297 ~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 297 KLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 34444444443 34689999999988755 5678889999999998889999999999988754
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=60.17 E-value=27 Score=26.53 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=42.7
Q ss_pred ccccccHHHHHHHHHHHHH-------HHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 77 TDLRFQSAAIGALQEASEA-------YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaaE~-------~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
..+.|+.+++..|.+.+.. .+..+.+.|...|.-.++-+|+.+|+.-+..+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4568999999999988764 57788888888888889999999999877664
No 57
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=58.27 E-value=4.8 Score=25.06 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=27.1
Q ss_pred HHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 95 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 95 ~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+-|..+..+|.+.|+..++..|+.+|+.-|..
T Consensus 40 ADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 40 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 34778888889999999999999999988764
No 58
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=58.02 E-value=11 Score=24.58 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=39.7
Q ss_pred hhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q psy10959 58 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIH 110 (132)
Q Consensus 58 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~H 110 (132)
++...|.++=+.||+..+ +-.-+++++...+--|+|+.|-.|+|.-...|-|
T Consensus 2 fL~~~~Lqkri~~I~~k~-gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 2 FLLQAPLQRRILEIGKKH-GITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp CSCHHHHHHHHHHHHHTT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHhc-CCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 355678888888998753 3346889999999999999999999988777776
No 59
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=49.92 E-value=11 Score=25.46 Aligned_cols=60 Identities=10% Similarity=0.325 Sum_probs=37.3
Q ss_pred hhcchhHHHHHHHHhhh-hccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCc-----------cccCcccHHHHH
Q psy10959 59 IRKLPFQRLVREIAQDF-KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR-----------VTIMPKDIQLAR 125 (132)
Q Consensus 59 ipk~pF~RlVreI~~~~-~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakR-----------vTi~~kDi~La~ 125 (132)
||+.-..||+. ..| +.++|++.+|+.++++..+-|+ .+|..=+++.+. ..|..+|.+=+.
T Consensus 2 ip~~llaRIL~---~~F~~~kTrIt~da~~lv~kY~diFV----rEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 2 LSKEALIKILS---QNEGGNDMKIADEVVPMIQKYLDIFI----DEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCSHHHHHHHT---TTSCSSCCEECTTTHHHHHHHHHHHH----HHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCHHHHHHHHH---HHhCCCCceecHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 55655666665 224 4789999999988877665554 444444455444 377777876433
No 60
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=48.96 E-value=6.6 Score=25.30 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 96 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 96 ~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
=|..|..+|.+.|++..+..|+.+|+.-|..
T Consensus 39 Dl~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 39 ELRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 4677788888889998999999999998765
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=37.30 E-value=98 Score=23.35 Aligned_cols=49 Identities=8% Similarity=0.016 Sum_probs=39.3
Q ss_pred cccccHHHHHHHHHHHH------HHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 78 DLRFQSAAIGALQEASE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 78 ~~r~~~~Al~aLQeaaE------~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+..|+.+++..+.+.+. -++..+++.+...+...+..+|+.+|+.-+..
T Consensus 220 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 220 PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 46789999999988888 46778888888888777788899999876653
No 62
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=35.82 E-value=93 Score=20.45 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=49.9
Q ss_pred hhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC-ccccCcccHHHHHHH
Q psy10959 59 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAK-RVTIMPKDIQLARRI 127 (132)
Q Consensus 59 ipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~Hak-RvTi~~kDi~La~ri 127 (132)
++|....||+..+ .+..++.+.+.+|.-.+-.|+..|-|.|..+.-.-+ .-=|.|..|.-|.|-
T Consensus 17 f~k~~vKrl~~~~-----~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 17 FPKAAIKRLIQSI-----TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp CCHHHHHHHHHHH-----HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 5565666666555 356788999999999999999999999998887654 336888888887554
No 63
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=35.09 E-value=33 Score=21.37 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=22.9
Q ss_pred HHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 97 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 97 lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
|..+..+|.+.|+..++..|+.+|+.-|..
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 445566777778888888999999987764
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=32.46 E-value=1e+02 Score=21.39 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=34.9
Q ss_pred ccccccHHHHHHHHHHHH---HHHHHHHHhHHHHhhhcCccccCcccHHHHH
Q psy10959 77 TDLRFQSAAIGALQEASE---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 125 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaaE---~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ 125 (132)
.+..++.+++..|.+.++ ..+..+++.+...+...++ +|+.+|++-+.
T Consensus 190 ~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l 240 (242)
T 3bos_A 190 RGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEML 240 (242)
T ss_dssp TTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHh
Confidence 356799999999888877 3566677767666655554 58888887664
No 65
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=31.98 E-value=1.6e+02 Score=22.04 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=37.0
Q ss_pred cccccHHHHHHHHHHHH------HHHHHHHHhHHHHhhhcCccccCcccHHHHH
Q psy10959 78 DLRFQSAAIGALQEASE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 125 (132)
Q Consensus 78 ~~r~~~~Al~aLQeaaE------~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ 125 (132)
..-|+.+++..|.+.+. ..+..+++.+...+...+..+|+.+|++-+.
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~ 269 (386)
T 2qby_A 216 PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAK 269 (386)
T ss_dssp SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 46789999999988887 2466677877777776677788888887654
No 66
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=31.81 E-value=1.1e+02 Score=20.72 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=31.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 78 DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 78 ~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+..++.+++..|.+.+.-.+-.+......++..+ -+|+.+|++-+..
T Consensus 178 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 178 GVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4568899998888777654444444444444555 4788889887654
No 67
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=31.44 E-value=97 Score=25.15 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=43.5
Q ss_pred ccccccHHHHHHHHHHH-H---HHHHHHHHhHHHHhhhcCccccCcccHHHHHHHh
Q psy10959 77 TDLRFQSAAIGALQEAS-E---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaa-E---~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rir 128 (132)
....|+.+++..+-..+ + -....+++.|...|.-.++-+|+.+|++-+..+-
T Consensus 382 ~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 382 EGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred hCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 34578999999888887 4 3778889999999988899999999999988763
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=31.01 E-value=39 Score=24.69 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=35.0
Q ss_pred HHHhhhhccccccHHH-HHHHHHHHH----HHHHHHHHhHHHHhhhcCccccCcccHHHH
Q psy10959 70 EIAQDFKTDLRFQSAA-IGALQEASE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124 (132)
Q Consensus 70 eI~~~~~~~~r~~~~A-l~aLQeaaE----~~lv~lfe~a~~~a~HakRvTi~~kDi~La 124 (132)
+|+..+...+.+..++ +..|-+.++ .-|..+.+.|...|...++.+|+.+|++-+
T Consensus 193 ~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a 252 (254)
T 1ixz_A 193 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252 (254)
T ss_dssp HHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 3444333344454443 444444444 357788888888888888888999998765
No 69
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.73 E-value=57 Score=22.14 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcCcc
Q psy10959 84 AAIGALQEASEAYLVGLFEDTNLCAIHAKRV 114 (132)
Q Consensus 84 ~Al~aLQeaaE~~lv~lfe~a~~~a~HakRv 114 (132)
.....+..-.|+.-.+||+.||.+-.-+.+.
T Consensus 47 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e 77 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLFDEANNMVADARKE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688889999999999999998877654
No 70
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=28.58 E-value=92 Score=21.23 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=30.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHH
Q psy10959 77 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 125 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ 125 (132)
....++.+++..|.+.++-..-.+......+...++. +|+.+|++-+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~~ 248 (250)
T 1njg_A 201 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAML 248 (250)
T ss_dssp TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHHh
Confidence 3567889999888888775333333333333444443 78888887553
No 71
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=28.55 E-value=43 Score=20.64 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 95 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 95 ~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+-|..+..+|.+.|+...+..|+..|+.-|..
T Consensus 38 ADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 38 ADINSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp HHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 34556677788888888889999999987764
No 72
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=28.29 E-value=49 Score=21.03 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=22.6
Q ss_pred HHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 97 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 97 lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
|..|..+|.+.|+...+..|+.+|+.-|..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 445556677777777788999999988764
No 73
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=26.38 E-value=48 Score=24.18 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHhhhhccccccHHH-HHHHHHHHHH----HHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 69 REIAQDFKTDLRFQSAA-IGALQEASEA----YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 69 reI~~~~~~~~r~~~~A-l~aLQeaaE~----~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
.+|+..+-..+.+..++ +..|.+..+- -|..+.+.|...|...++.+|+.+|+.-|..
T Consensus 188 ~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 188 EQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 34544443334444443 3333333332 5677888888899988889999999988765
No 74
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=26.07 E-value=94 Score=24.49 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=22.2
Q ss_pred HHHHHHhhhh--ccccccHHHHHHHHHHHHHHHHHHH
Q psy10959 67 LVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLF 101 (132)
Q Consensus 67 lVreI~~~~~--~~~r~~~~Al~aLQeaaE~~lv~lf 101 (132)
++.+|+..+. ..++|...--.+|||.+|++.-.-|
T Consensus 100 ~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~sf~~y 136 (290)
T 3qb5_K 100 KIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHF 136 (290)
T ss_dssp HHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444432 3478877666899999999654443
No 75
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=25.33 E-value=91 Score=23.85 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 64 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 64 F~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
+...+++++.+ .+..++.+|+..|-+.++.=+..+..+-..++.+++.-+|+.+||+-+...
T Consensus 147 l~~~l~~~~~~--~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 147 LPRWVAARAKQ--LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHH--TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 44455555442 467899999999999888656556555556666554457898998765443
No 76
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=23.24 E-value=70 Score=19.97 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=26.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHH-HhHHHHhhhcCccccCcccHHHHHHH
Q psy10959 78 DLRFQSAAIGALQEASEAYLVGLF-EDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 78 ~~r~~~~Al~aLQeaaE~~lv~lf-e~a~~~a~HakRvTi~~kDi~La~ri 127 (132)
++.|+++|...|+.+ -.|+-.-. ...-..|.-.+...|+++.+.-|.--
T Consensus 3 ~l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~ 52 (63)
T 2kru_A 3 ELSWTAEAEKMLGKV-PFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEH 52 (63)
T ss_dssp CCEECHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHH
Confidence 455666666666552 22222222 22234566677777777777666543
No 77
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=23.07 E-value=79 Score=20.24 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy10959 83 SAAIGALQEASEAYLVGLFEDT 104 (132)
Q Consensus 83 ~~Al~aLQeaaE~~lv~lfe~a 104 (132)
.+|+..++++.+.+|..+.++-
T Consensus 47 eEA~~~a~eAl~~~le~~~e~g 68 (87)
T 2dsy_A 47 KECEANLQAALEDWLLFLLSRG 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 6899999999999999887764
No 78
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.17 E-value=68 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHHHhhhcCccccCcccHHHHHH
Q psy10959 95 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 95 ~~lv~lfe~a~~~a~HakRvTi~~kDi~La~r 126 (132)
+-|..+..+|.+.|+..++..|+.+|+.-|..
T Consensus 390 ADI~~l~~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 390 ADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 46778888999999999999999999988753
No 79
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.88 E-value=70 Score=23.75 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHHHhhhhccccccHHH-HHHHHHHHH----HHHHHHHHhHHHHhhhcCccccCcccHHHH
Q psy10959 69 REIAQDFKTDLRFQSAA-IGALQEASE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124 (132)
Q Consensus 69 reI~~~~~~~~r~~~~A-l~aLQeaaE----~~lv~lfe~a~~~a~HakRvTi~~kDi~La 124 (132)
.+|+..+.....+..++ +..|.+.++ .-|..+.+.|...|...++.+|+.+|++-|
T Consensus 216 ~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a 276 (278)
T 1iy2_A 216 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 276 (278)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHH
T ss_pred HHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 34444433344454444 444444444 346677888888888777888999998765
Done!