RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10959
(132 letters)
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A
3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A*
1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Length = 136
Score = 143 bits (360), Expect = 2e-45
Identities = 127/136 (93%), Positives = 130/136 (95%), Gaps = 4/136 (2%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPH----RTVALREIRRYQKSTE 56
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPH TVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 117 MPKDIQLARRIRGERA 132
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding
prote; 1.70A {Xenopus laevis}
Length = 77
Score = 126 bits (317), Expect = 2e-39
Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV LFEDTNLCAIHAKRVTI
Sbjct: 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTI 61
Query: 117 MPKDIQLARRIRGERA 132
MPKDIQLARRIRGERA
Sbjct: 62 MPKDIQLARRIRGERA 77
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold,
centromere, DNA binding protein; 2.50A {Homo sapiens}
PDB: 3an2_A
Length = 140
Score = 116 bits (290), Expect = 1e-34
Identities = 65/134 (48%), Positives = 80/134 (59%), Gaps = 9/134 (6%)
Query: 8 ARKSTGGKAPRKQ----LATKAARKSAPSTGGVKKPHR---TVALREIRRYQKSTELLIR 60
R+S +APR++ T + PS G H L+EIR+ QKST LLIR
Sbjct: 4 RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIR 63
Query: 61 KLPFQRLVREIAQDF--KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 118
KLPF RL REI F D +Q+ A+ ALQEA+EA+LV LFED L +HA RVT+ P
Sbjct: 64 KLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFP 123
Query: 119 KDIQLARRIRGERA 132
KD+QLARRIRG
Sbjct: 124 KDVQLARRIRGLEE 137
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold,
centromere, DNA binding protein; 2.10A {Homo sapiens}
Length = 82
Score = 109 bits (273), Expect = 1e-32
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 57 LLIRKLPFQRLVREIAQDFKT--DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 114
LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV LFED L +HA RV
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 115 TIMPKDIQLARRIRGER 131
T+ PKD+QLARRIRG
Sbjct: 62 TLFPKDVQLARRIRGLE 78
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore,
centromere, histone chaperone, BUDD; 2.32A
{Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Length = 100
Score = 109 bits (273), Expect = 2e-32
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 7/99 (7%)
Query: 37 KKPHR----TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSAAIGAL 89
+ R +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS AI AL
Sbjct: 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMAL 61
Query: 90 QEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 128
QEASEAYLVGL E TNL A+HAKR+TIM KD+QLARRIR
Sbjct: 62 QEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIR 100
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere,
CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Length = 156
Score = 110 bits (276), Expect = 2e-32
Identities = 65/141 (46%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 1 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPSTGGVKKPHR---TVALREIRRYQK 53
+ R+S +APR++ T + PS G H L+EIR+ QK
Sbjct: 13 DPNSMGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQK 72
Query: 54 STELLIRKLPFQRLVREIAQDF--KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHA 111
ST LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV LFED L +HA
Sbjct: 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHA 132
Query: 112 KRVTIMPKDIQLARRIRGERA 132
RVT+ PKD+QLARRIRG
Sbjct: 133 GRVTLFPKDVQLARRIRGLEE 153
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 101 bits (251), Expect = 9e-28
Identities = 54/88 (61%), Positives = 66/88 (75%), Gaps = 3/88 (3%)
Query: 48 IRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQEASEAYLVGLFEDT 104
+ + +LLI K+PF RLV+E+ +F T DLR+QS AI ALQEASEAYLVGL E T
Sbjct: 1 MHHHHHHKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHT 60
Query: 105 NLCAIHAKRVTIMPKDIQLARRIRGERA 132
NL A+HAKR+TIM KD+QLARRIRG+
Sbjct: 61 NLLALHAKRITIMKKDMQLARRIRGQFL 88
Score = 38.5 bits (88), Expect = 2e-04
Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 6/133 (4%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRTV----ALREIRRYQKSTE 56
+ RK + + + TG + + + + A + +
Sbjct: 97 HKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYT 156
Query: 57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
++R + E D R ++ +++L + D+ HAKR T+
Sbjct: 157 SVLRD--IIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTV 214
Query: 117 MPKDIQLARRIRG 129
D+ A + +G
Sbjct: 215 TSLDVVYALKRQG 227
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase,
oxidoredu structural protein complex; HET: M3L OGA EDO;
1.80A {Homo sapiens}
Length = 26
Score = 35.6 bits (81), Expect = 2e-04
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 18 RKQLATKAARKSAPSTGGVKKP 39
RKQLATKAAR SAP+TGGVKKP
Sbjct: 1 RKQLATKAARXSAPATGGVKKP 22
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger,
chromatin regulator, transcription regulation; HET:
M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Length = 26
Score = 35.3 bits (80), Expect = 3e-04
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 23 TKAARKSAPSTGGVKKPHR 41
TKAARKSAP+TGGV KPHR
Sbjct: 1 TKAARKSAPATGGVXKPHR 19
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair,
histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB:
4drb_A
Length = 113
Score = 35.0 bits (80), Expect = 0.001
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 65 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124
L E+A D + +F I A+ E + +D + A HAKR TI +D++L
Sbjct: 34 GCLCEEVALDKEM--QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLL 91
Query: 125 RR 126
R
Sbjct: 92 AR 93
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi
anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces
cerevisiae}
Length = 90
Score = 33.8 bits (77), Expect = 0.003
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 66 RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 125
++++ D+++ I +L E + L + D A HA R + D+ L
Sbjct: 20 ERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYL 77
Query: 126 R 126
R
Sbjct: 78 R 78
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA,
nucleus, DNA binding protein; 2.15A {Gallus gallus}
Length = 107
Score = 33.1 bits (75), Expect = 0.008
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 66 RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 125
L +++A+D F + A+ E + D + A HAKR TI +D++L
Sbjct: 27 CLCQDVAEDKGV--LFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLA 84
Query: 126 R 126
R
Sbjct: 85 R 85
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone
fold, complex (TWO transcr factors); 2.00A {Drosophila
melanogaster} SCOP: a.22.1.3
Length = 68
Score = 32.1 bits (73), Expect = 0.008
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 66 RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124
+++ I ++ ++ + L E + Y+ + +D + A HA++ TI D++LA
Sbjct: 5 QVIMSILKELNVQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLA 62
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
{Pyrococcus horikoshii} SCOP: a.22.1.2
Length = 70
Score = 32.0 bits (73), Expect = 0.009
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 80 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126
R A L E E Y + + + A HA R T+ +DI+LA +
Sbjct: 23 RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus
fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A
1bfm_A
Length = 68
Score = 31.5 bits (72), Expect = 0.013
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 80 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124
R A AL + E + + A HA R TI +DI+LA
Sbjct: 19 RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 63
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA
binding protein; HET: CIT; 2.20A {Gallus gallus} PDB:
3b0d_T* 3vh5_T 3vh6_T
Length = 111
Score = 32.3 bits (73), Expect = 0.013
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 68 VREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA-RR 126
+++I + A +++ SE Y + D + HA R T+ D++L RR
Sbjct: 13 IKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71
Query: 127 IR 128
Sbjct: 72 QG 73
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus,
binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Length = 140
Score = 30.9 bits (69), Expect = 0.055
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 65 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124
L +++A+D + F + A+ E + D + A HAKR TI +D++L
Sbjct: 26 GALAQDVAEDK--GVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLL 83
Query: 125 RR 126
R
Sbjct: 84 AR 85
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens}
SCOP: a.22.1.3
Length = 93
Score = 29.0 bits (65), Expect = 0.18
Identities = 13/65 (20%), Positives = 23/65 (35%)
Query: 60 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 119
LP + R + + A +QE ++ + + + KR TI +
Sbjct: 7 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 66
Query: 120 DIQLA 124
DI A
Sbjct: 67 DILFA 71
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.27
Identities = 3/77 (3%), Positives = 18/77 (23%), Gaps = 14/77 (18%)
Query: 51 YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIH 110
+ E + ++ ++ F + + + + +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDV---------QDMPKSILSKEEI---- 51
Query: 111 AKRVTIMPKDIQLARRI 127
+ + + R+
Sbjct: 52 -DHIIMSKDAVSGTLRL 67
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B
3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B
3azf_B 3afa_B 3azh_B 3azk_B ...
Length = 103
Score = 28.0 bits (62), Expect = 0.43
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 34 GGVKKPHRTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAS 93
G K + R+ + I K +RL R R +
Sbjct: 5 GKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVK-----RISGLIYEETRGVL 59
Query: 94 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129
+ +L + D HAKR T+ D+ A + +G
Sbjct: 60 KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding
prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B
1aoi_B 3kwq_B* 1hio_D 2yfv_B
Length = 84
Score = 27.1 bits (60), Expect = 0.67
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 80 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129
R + + +L + D HAKR T+ D+ A + +G
Sbjct: 27 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 76
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo
sapiens} PDB: 3a1a_A*
Length = 159
Score = 27.8 bits (61), Expect = 0.94
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARK 28
ARTKQTARKSTGGKAPRKQL + +
Sbjct: 1 ARTKQTARKSTGGKAPRKQLRERLVYE 27
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4
carbohydrate esterase, TIM barrel, hydrolase, deace
carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia
coli} PDB: 4f9j_A*
Length = 618
Score = 26.9 bits (59), Expect = 2.4
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 37 KKPHRTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAY 96
++ Q E R PF VR DL +A G L +A
Sbjct: 374 TLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFH-DDAL 432
Query: 97 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126
L +ED + AI A + + R+
Sbjct: 433 L-SDYEDASAPAITAYQQAGFSGSLSEIRQ 461
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone
chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl
y-1140}
Length = 103
Score = 26.2 bits (57), Expect = 2.4
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 5/99 (5%)
Query: 31 PSTGGVKKPHRTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 90
G K + R+ + I K +RL R R ++
Sbjct: 2 SGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVK-----RISGLIYEEVR 56
Query: 91 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129
+ +L + D HAKR T+ D+ A + +G
Sbjct: 57 NVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 102
Score = 25.8 bits (56), Expect = 2.6
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 34 GGVKKPHRTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAS 93
G K + R+ + I K +RL R R ++
Sbjct: 4 GKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVK-----RISGLIYEEVRAVL 58
Query: 94 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129
+++L + D+ HAKR T+ D+ A + +G
Sbjct: 59 KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_B
Length = 128
Score = 24.9 bits (54), Expect = 6.0
Identities = 13/65 (20%), Positives = 21/65 (32%)
Query: 60 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 119
LP + R I + A A+ A+ + + + + A TI K
Sbjct: 8 LNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAK 67
Query: 120 DIQLA 124
DI
Sbjct: 68 DILQT 72
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
H2A/H2B, tata-DNA, transcription initiation, NC2,
negative cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 179
Score = 24.8 bits (53), Expect = 9.3
Identities = 8/65 (12%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 60 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 119
+P + + + ++ ++R + A + ++ + + N +++ TI P+
Sbjct: 14 LTIPRAAINK-MIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPE 72
Query: 120 DIQLA 124
+ A
Sbjct: 73 HVIQA 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.357
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,920,571
Number of extensions: 107374
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 34
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)