RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10959
(132 letters)
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 158 bits (402), Expect = 2e-52
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 42 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLF 101
TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLF
Sbjct: 5 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLF 64
Query: 102 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 132
EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 65 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 95
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 47.5 bits (113), Expect = 2e-08
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 43 VALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFE 102
+ + + L + +R+++ R S A+ + L E
Sbjct: 64 ADVLMVEGVEDYDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICRATEELGE 118
Query: 103 DTNLCAIHAKRVTIMPKDIQLA 124
A R T+ +D++ A
Sbjct: 119 KAAEYADEDGRKTVQGEDVEKA 140
Score = 27.8 bits (62), Expect = 0.26
Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 63 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 122
+R+ R+ + R A + + + + + T+M + ++
Sbjct: 6 AIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 123 LARRIRGER 131
+
Sbjct: 62 ALADVLMVE 70
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 34.7 bits (80), Expect = 3e-04
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 62 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 121
LP + R I + R A L E E Y + + + A HA R T+ +DI
Sbjct: 3 LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60
Query: 122 QLA 124
+LA
Sbjct: 61 KLA 63
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 34.4 bits (79), Expect = 0.001
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 44 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFED 103
A I + ++ L + L++E+ + + E + +
Sbjct: 85 AQSAIEKRKRRNPLSLPVEKIHPLLKEVLGY-----KIDHQVSVYIVAVLEYISADILKL 139
Query: 104 TNLCAIHAKRVTIMPKDIQLARR 126
+ + I +DI++A
Sbjct: 140 AGNYVRNIRHYEITKQDIKVAMC 162
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 32.8 bits (75), Expect = 0.001
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 80 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124
R A AL + E + + A HA R TI +DI+LA
Sbjct: 20 RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 64
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 32.9 bits (75), Expect = 0.002
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 62 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 121
LP + R + + A +QE ++ + + + KR TI +DI
Sbjct: 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62
Query: 122 QLA 124
A
Sbjct: 63 LFA 65
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 30.1 bits (68), Expect = 0.021
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 80 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130
R + + +L + D HAKR T+ D+ A + +G
Sbjct: 26 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 76
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 68
Score = 29.6 bits (67), Expect = 0.023
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 66 RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124
+++ I ++ ++ + L E + Y+ + +D + A HA++ TI D++LA
Sbjct: 5 QVIMSILKELNVQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLA 62
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 30.3 bits (68), Expect = 0.031
Identities = 8/63 (12%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 62 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 121
+P + ++ ++ ++R + A + ++ + + N +++ TI P+ +
Sbjct: 5 IPRAA-INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 63
Query: 122 QLA 124
A
Sbjct: 64 IQA 66
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 27.1 bits (60), Expect = 0.25
Identities = 12/62 (19%), Positives = 20/62 (32%)
Query: 63 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 122
P + R I + A A+ A+ + + + + A TI KDI
Sbjct: 1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDIL 60
Query: 123 LA 124
Sbjct: 61 QT 62
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 25.9 bits (57), Expect = 0.64
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 61 KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 120
+ P R +++I Q + + +A + A E +L L + T+
Sbjct: 2 RFPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSH 60
Query: 121 IQLA 124
++
Sbjct: 61 LKQC 64
>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 26.1 bits (57), Expect = 1.0
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 64 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIH 110
++ L E+A+ + + F +I A + A + + E L AIH
Sbjct: 34 YKPLFTELAKKNRGLMNF--VSIDARKFGRHAGNLNMKEQFPLFAIH 78
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 70
Score = 23.5 bits (51), Expect = 4.4
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 85 AIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127
A L E L + +D HAKR + +DI ++ ++
Sbjct: 28 AAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.131 0.357
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,769
Number of extensions: 18091
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 17
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)