RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10960
(341 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 283 bits (726), Expect = 5e-92
Identities = 98/207 (47%), Positives = 137/207 (66%), Gaps = 8/207 (3%)
Query: 141 IINTELGQIKGVQRSNTLTNAALYSFQGIPYAAPPVGDLRFRPPQAHPGWEGTLDATKEG 200
++ T G+++G++ T+ +Y+F GIPYA PPVG+LRF+ PQ W G LDATK G
Sbjct: 2 VVETSYGKVRGLRV--TVDGGPVYAFLGIPYAKPPVGELRFKKPQPPEPWTGVLDATKYG 59
Query: 201 GICVQNDV----MLGMFESGSDDCLYLNVYSPCIT-AGANKAVMVFVHGGGFTFGHPA-E 254
C QN+ M S+DCLYLNVY+P + VMV++HGGGF G + +
Sbjct: 60 PACPQNNDLGSEMWNKNTGMSEDCLYLNVYTPKLASESKKLPVMVWIHGGGFQSGSASLD 119
Query: 255 VFYGPDWLVAKDVVLVAIHYRVNIFGFLNLGLEECPGNVGLRDIMASLQWVQANISDFGG 314
+ GPD ++DVV+V I+YR+ GFL+ G E PGN GL D + +L+WV+ NI+ FGG
Sbjct: 120 DYDGPDLAASEDVVVVTINYRLGALGFLSTGDSELPGNAGLLDQVLALRWVKDNIAAFGG 179
Query: 315 NPNNVTLFGESAGAASIHYLLMAPSTR 341
+P+NVTLFGESAGAAS+ LL++P++R
Sbjct: 180 DPDNVTLFGESAGAASVSLLLLSPASR 206
Score = 61.2 bits (149), Expect = 2e-10
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 5 IINTELGQIKGVQRSNTLTNAALYSFQGIPYAAPPVGDLRFR 46
++ T G+++G++ T+ +Y+F GIPYA PPVG+LRF+
Sbjct: 2 VVETSYGKVRGLRV--TVDGGPVYAFLGIPYAKPPVGELRFK 41
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 243 bits (622), Expect = 1e-76
Identities = 95/208 (45%), Positives = 133/208 (63%), Gaps = 15/208 (7%)
Query: 141 IINTELGQIKGVQRSNTLTNAALYSFQGIPYAAPPVGDLRFRPPQAHPGWEGTLDATKEG 200
++ T G+++GV +YSF GIPYA PPVGDLRF+ PQ + W LDAT
Sbjct: 1 LVVTPNGKVRGVDEGG------VYSFLGIPYAEPPVGDLRFKEPQPYEPWSDVLDATSYP 54
Query: 201 GICVQNDVMLGMFE----SGSDDCLYLNVYSPC-ITAGANKAVMVFVHGGGFTFGHPAEV 255
C+Q D + G GS+DCLYLNVY+P G + VMV++HGGGF FG +
Sbjct: 55 PSCMQWDQLGGGLWNAKLPGSEDCLYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSL- 113
Query: 256 FYGPDWLVAK--DVVLVAIHYRVNIFGFLNLGLEECPGNVGLRDIMASLQWVQANISDFG 313
Y D L + +V++V+I+YR+ + GFL+ G E PGN GL+D +L+WVQ NI+ FG
Sbjct: 114 -YPGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAFG 172
Query: 314 GNPNNVTLFGESAGAASIHYLLMAPSTR 341
G+P++VT+FGESAG AS+ LL++P ++
Sbjct: 173 GDPDSVTIFGESAGGASVSLLLLSPDSK 200
Score = 50.0 bits (120), Expect = 8e-07
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Query: 5 IINTELGQIKGVQRSNTLTNAALYSFQGIPYAAPPVGDLRFR 46
++ T G+++GV +YSF GIPYA PPVGDLRF+
Sbjct: 1 LVVTPNGKVRGVDEGG------VYSFLGIPYAEPPVGDLRFK 36
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 208 bits (530), Expect = 4e-63
Identities = 92/206 (44%), Positives = 128/206 (62%), Gaps = 14/206 (6%)
Query: 141 IINTELGQIKGVQRSNTLTNAALYSFQGIPYAAPPVGDLRFRPPQAHPGWEGTLDATKEG 200
+ T G+++G+ + ++S+ GIPYAAPPVG+LRFR P W G DAT+ G
Sbjct: 4 VAETTTGKVEGITVN------GVHSWLGIPYAAPPVGELRFRRPVPPEPWSGVRDATQFG 57
Query: 201 GICVQNDVMLGMFE--SGSDDCLYLNVYSPCITAGANKAVMVFVHGGGFTFGHPAEVFYG 258
C Q +G E +GS+DCLYLN+++P + A VMV++HGGG+ G +E Y
Sbjct: 58 PACPQPFNRMGSGEDFTGSEDCLYLNIWAPEVPA-EKLPVMVYIHGGGYIMGSGSEPLYD 116
Query: 259 PDWLVAK-DVVLVAIHYRVNIFGFLNL----GLEECPGNVGLRDIMASLQWVQANISDFG 313
L A+ DVV+V+++YR+ GFL+L + N+GL D + +L+WV+ NI FG
Sbjct: 117 GSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLDQILALKWVRDNIEAFG 176
Query: 314 GNPNNVTLFGESAGAASIHYLLMAPS 339
G+P NVTLFGESAGAASI LL PS
Sbjct: 177 GDPQNVTLFGESAGAASILTLLAVPS 202
Score = 45.9 bits (109), Expect = 2e-05
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 6/42 (14%)
Query: 5 IINTELGQIKGVQRSNTLTNAALYSFQGIPYAAPPVGDLRFR 46
+ T G+++G+ + ++S+ GIPYAAPPVG+LRFR
Sbjct: 4 VAETTTGKVEGITVN------GVHSWLGIPYAAPPVGELRFR 39
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 65.0 bits (158), Expect = 8e-12
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 225 VYSPCITAGANKAVMVFVHGGGFTFGHPAEVFYGP--DWLVAKDVVLVAIHYRVNIFGFL 282
VY P A A V++++HGGG+ G A V+V++ YR+
Sbjct: 68 VYRPDRKAAATAPVVLYLHGGGWVLG-SLRTHDALVARLAAAAGAVVVSVDYRLA----- 121
Query: 283 NLGLEECPGNVGLRDIMASLQWVQANISDFGGNPNNVTLFGESAGA 328
E P L D A+ +W++AN ++ G +P+ + + G+SAG
Sbjct: 122 ----PEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGG 163
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 53.0 bits (128), Expect = 3e-08
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 24/98 (24%)
Query: 239 MVFVHGGGFTFGHPAEVFYGPDWLVAK-----DVVLVAIHYRVNIFGFLNLGLEECPGN- 292
+V+ HGGGF G D L + V+V++ YR L P +
Sbjct: 1 LVYFHGGGFVLGSADT----HDRLCRRLAAAAGAVVVSVDYR--------LA----PEHP 44
Query: 293 --VGLRDIMASLQWVQANISDFGGNPNNVTLFGESAGA 328
+ D A+L+W+ + + G +P+ + + G+SAG
Sbjct: 45 FPAAIEDAYAALRWLAEHAWELGADPSRIAVAGDSAGG 82
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 33.1 bits (76), Expect = 0.080
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 22/92 (23%)
Query: 238 VMVFVHGGGFTFGHPAEVFYGPDWLVAKDVVLVAIHYRVNIFGFLNLGLEECPGNVGLRD 297
++V +HG G A + L ++ +VA+ Y PG+ G
Sbjct: 1 LVVLLHGAGGDPEAYAPLA---RALASRGYNVVAVDY---------------PGH-GASL 41
Query: 298 IMASLQWVQANISDFGGNPNNVTLFGESAGAA 329
+ V ++D +P + L G S G
Sbjct: 42 GAPDAEAV---LADAPLDPERIVLVGHSLGGG 70
>gnl|CDD|236660 PRK10162, PRK10162, acetyl esterase; Provisional.
Length = 318
Score = 30.8 bits (70), Expect = 1.1
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 23/110 (20%)
Query: 225 VYSPCITAGANKAVMVFVHGGGFTFG----HPAEVFYGPDWLVAK--DVVLVAIHYRVNI 278
+Y P + +A + ++HGGGF G H + L+A ++ I Y ++
Sbjct: 73 LYYPQPDS---QATLFYLHGGGFILGNLDTHDRIM-----RLLASYSGCTVIGIDYTLSP 124
Query: 279 FGFLNLGLEECPGNVGLRDIMASLQWVQANISDFGGNPNNVTLFGESAGA 328
+EE +A + + D+G N + + G+SAGA
Sbjct: 125 EARFPQAIEEI---------VAVCCYFHQHAEDYGINMSRIGFAGDSAGA 165
>gnl|CDD|226344 COG3823, COG3823, Glutamine cyclotransferase [Posttranslational
modification, protein turnover, chaperones].
Length = 262
Score = 29.8 bits (67), Expect = 1.8
Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 12/65 (18%)
Query: 60 REPLDETPYGQGLVTRGTHIVQLTDLRRGA--RRYRLRNVQ----------NVFRPWITV 107
P D T + QGL HI++ T L + R L Q VF IT
Sbjct: 39 TYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK 98
Query: 108 SKAAV 112
Sbjct: 99 LGDYF 103
>gnl|CDD|221889 pfam13004, BACON, Bacteroidetes-Associated Carbohydrate-binding
Often N-terminal. The BACON (Bacteroidetes-Associated
Carbohydrate-binding Often N-terminal) domain is an
all-beta domain found in diverse architectures,
principally in combination with carbohydrate-active
enzymes and proteases. These architectures suggest a
carbohydrate-binding function which is also supported by
the nature of BACON's few conserved amino-acids. The
phyletic distribution of BACON and other data
tentatively suggest that it may frequently function to
bind mucin.
Length = 66
Score = 27.0 bits (60), Expect = 3.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 104 WITVSKAAVANSGEFKISAKTN 125
WITV+ A+ A + ++ N
Sbjct: 18 WITVTPASGAGNTTVTVTVAAN 39
>gnl|CDD|198337 cd10304, GST_C_Arc1p_N_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of the Aminoacyl
tRNA synthetase cofactor 1 and similar proteins.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl tRNA synthetase cofactor 1
(Arc1p)-like subfamily; Arc1p, also called GU4 nucleic
binding protein 1 (G4p1) or p42, is a
tRNA-aminoacylation and nuclear-export cofactor. It
contains a domain in the N-terminal region with
similarity to the C-terminal alpha helical domain of
GSTs. This domain mediates the association of the
aminoacyl tRNA synthetases (aaRSs), MetRS and GluRS, in
yeast to form a stable stoichiometric ternany complex.
The GST_C-like domain of Arc1p is a protein-protein
interaction domain containing two binding sites which
enable it to bind the two aaRSs simultaneously and
independently. The MetRS-Arc1p-GluRS complex selectively
recruits and aminoacylates its cognate tRNAs without
additional cofactors. Arc1p also plays a role in the
transport of tRNA from the nucleus to the cytoplasm. It
may also control the subcellular distribution of GluRS
in the cytoplasm, nucleoplasm, and the mitochondrial
matrix.
Length = 100
Score = 27.3 bits (61), Expect = 3.7
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 104 WITVSKAAVANSGEFKISAKTNSYLRDNTYI 134
W++V+K+ + + + N +LR T++
Sbjct: 10 WLSVAKSGPVSKDVQETLGQLNLHLRTRTFL 40
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional.
Length = 429
Score = 28.5 bits (63), Expect = 6.2
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 190 WEGTLDATKEG---GICVQNDVMLGMFE--SGSDDCLYLNV---YSPCITAGANKAVMVF 241
W G + +K G G C ND++LG+ E D LY+++ + + + VF
Sbjct: 149 WGGGMHHSKCGECSGFCYVNDIVLGILELLKCHDRVLYVDIDMHHGDGVDEAFCTSDRVF 208
Query: 242 ---VHGGGFTF----GHPAEVFYG 258
+H G +F GHP +V YG
Sbjct: 209 TLSLHKFGESFFPGTGHPRDVGYG 232
>gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a
fosfomycin biosynthetic gene product, FomA, and similar
proteins found in a wide range of organisms. Together,
the fomA and fomB genes in the fosfomycin biosynthetic
gene cluster of Streptomyces wedmorensis confer
high-level fosfomycin resistance. FomA and FomB proteins
converted fosfomycin to fosfomycin monophosphate and
fosfomycin diphosphate in the presence of ATP and a
magnesium ion, indicating that FomA and FomB catalyzed
phosphorylations of fosfomycin and fosfomycin
monophosphate, respectively. FomA and related sequences
in this CD are members of the Amino Acid Kinase
Superfamily (AAK).
Length = 252
Score = 28.0 bits (63), Expect = 7.2
Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 239 MVFVHGGGFTFGHPA 253
+V VHGGG +FGHP
Sbjct: 40 LVLVHGGG-SFGHPK 53
>gnl|CDD|221442 pfam12146, Hydrolase_4, Putative lysophospholipase. This domain is
found in bacteria and eukaryotes and is approximately
110 amino acids in length. It is found in association
with pfam00561. Many members are annotated as being
lysophospholipases, and others as alpha-beta hydrolase
fold-containing proteins.
Length = 80
Score = 26.0 bits (58), Expect = 8.3
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 221 LYLNVYSPCITAGANKAVMVFVHGGG---FTFGHPAEVFYGPDWLV 263
L+ + P KAV+V VHGGG + AE + V
Sbjct: 4 LFYRRWLP--AGPPPKAVVVLVHGGGEHSGRYAELAEELAAQGYAV 47
>gnl|CDD|221844 pfam12904, Collagen_bind_2, Putative collagen-binding domain of a
collagenase. This domain is likely to be the
collagen-binding domain of a family of bacterial
collagenase enzymes. It is the C-terminal part of the
PDB:3kzs structure.
Length = 93
Score = 26.1 bits (58), Expect = 8.7
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 233 GANKAVMVFVHGGGFTFGHPAEVFYGPDW-LVAKD 266
G + F + G F P G DW L+ D
Sbjct: 59 GKLTYIGEFDNKGTVKFQPPGGYERGNDWVLILDD 93
>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function
prediction only].
Length = 252
Score = 27.7 bits (62), Expect = 8.9
Identities = 10/15 (66%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
Query: 239 MVFVHGGGFTFGHPA 253
++ VHGGG +FGHPA
Sbjct: 41 LIVVHGGG-SFGHPA 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,543,484
Number of extensions: 1715349
Number of successful extensions: 1245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1230
Number of HSP's successfully gapped: 26
Length of query: 341
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 243
Effective length of database: 6,590,910
Effective search space: 1601591130
Effective search space used: 1601591130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)