BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10962
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKG|A Chain A, Mature Human Frataxin
Length = 127
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 86/124 (69%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+
Sbjct: 5 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 64
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
QTPNKQIWLSSP+SGPKRYD+ +N W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 65 QTPNKQIWLSSPSSGPKRYDW-TGKN-WVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 121
Query: 191 HSGK 194
+SGK
Sbjct: 122 YSGK 125
>pdb|3S4M|A Chain A, Crystal Structure Of Wild-Type Human Frataxin
Length = 129
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+
Sbjct: 7 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
QTPNKQIWLSSP+SGPKRYD+ + W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 67 QTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
+SGK
Sbjct: 124 YSGK 127
>pdb|3T3J|A Chain A, 1.70 A Structure Of Friedreich's Ataxia Frataxin Variant
N146k
Length = 129
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVI +
Sbjct: 7 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVIKK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
QTPNKQIWLSSP+SGPKRYD+ + W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 67 QTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
+SGK
Sbjct: 124 YSGK 127
>pdb|1LY7|A Chain A, The Solution Structure Of The The C-Terminal Domain Of
Frataxin, The Protein Responsible For Friedreich Ataxia
Length = 121
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 83/117 (70%), Gaps = 3/117 (2%)
Query: 78 YEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQI 137
YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+QTPNKQI
Sbjct: 6 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 65
Query: 138 WLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGK 194
WLSSP+SGPKRYD+ +N W+Y HD SLH+LL E+ + + +D S+ ++SGK
Sbjct: 66 WLSSPSSGPKRYDW-TGKN-WVYSHDGVSLHELLAAELTKALKTKLDL-SSLAYSGK 119
>pdb|3T3K|A Chain A, 1.24 A Structure Of Friedreich's Ataxia Frataxin Variant
Q148r
Length = 129
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+
Sbjct: 7 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
+TPNKQIWLSSP+SGPKRYD+ + W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 67 RTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
+SGK
Sbjct: 124 YSGK 127
>pdb|3T3L|A Chain A, 1.15 A Structure Of Human Frataxin Variant Q153a
Length = 129
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+
Sbjct: 7 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
QTPNK IWLSSP+SGPKRYD+ + W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 67 QTPNKAIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
+SGK
Sbjct: 124 YSGK 127
>pdb|3T3T|A Chain A, 1.38 A Structure Of Human Frataxin Variant Q148g
pdb|3T3T|B Chain B, 1.38 A Structure Of Human Frataxin Variant Q148g
pdb|3T3T|C Chain C, 1.38 A Structure Of Human Frataxin Variant Q148g
pdb|3T3T|D Chain D, 1.38 A Structure Of Human Frataxin Variant Q148g
Length = 129
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+
Sbjct: 7 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
TPNKQIWLSSP+SGPKRYD+ + W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 67 GTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
+SGK
Sbjct: 124 YSGK 127
>pdb|3S5F|A Chain A, Crystal Structure Of Human Frataxin Variant W155f
pdb|3S5F|B Chain B, Crystal Structure Of Human Frataxin Variant W155f
Length = 129
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+
Sbjct: 7 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
QTPNKQI+LSSP+SGPKRYD+ + W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 67 QTPNKQIFLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
+SGK
Sbjct: 124 YSGK 127
>pdb|3T3X|A Chain A, 1.57 A Structure Of Friedreich's Ataxia Frataxin Variant
R165c
pdb|3T3X|B Chain B, 1.57 A Structure Of Friedreich's Ataxia Frataxin Variant
R165c
Length = 129
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+
Sbjct: 7 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
QTPNKQIWLSSP+SGPK YD+ + W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 67 QTPNKQIWLSSPSSGPKCYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
+SGK
Sbjct: 124 YSGK 127
>pdb|3S5D|A Chain A, Crystal Structure Of Human Frataxin Variant W155a
Length = 129
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+
Sbjct: 7 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
QTPNKQI LSSP+SGPKRYD+ + W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 67 QTPNKQIALSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
+SGK
Sbjct: 124 YSGK 127
>pdb|3S5E|A Chain A, Crystal Structure Of Human Frataxin Variant W155r, One Of
The Friedreich's Ataxia Point Mutations
Length = 129
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
GS+ YE + ETL+SL ++F+ + ++ E+ DV++G GVLTV G GTYVIN+
Sbjct: 7 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
QTPNKQI LSSP+SGPKRYD+ + W+Y HD SLH+LL E+ + + +D S+ +
Sbjct: 67 QTPNKQIRLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
+SGK
Sbjct: 124 YSGK 127
>pdb|2FQL|A Chain A, Crystal Structure Of Trimeric Frataxin From The Yeast
Saccharomyces Cerevisiae
pdb|3OEQ|A Chain A, Crystal Structure Of Trimeric Frataxin From The Yeast
Saccharomyces Cerevisiae, With Full Length N-Terminus
pdb|3OER|A Chain A, Crystal Structure Of Trimeric Frataxin From The Yeast
Saccharomyces Cerevisiae, Complexed With Cobalt
pdb|4EC2|A Chain A, Crystal Structure Of Trimeric Frataxin From The Yeast
Saccharomyces Cerevisiae, Complexed With Ferrous
Length = 123
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 87 ESLTDYFDVIVEENTHLENA------DVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLS 140
E DY D +++ L A DV GV+T+ GTYVIN+Q PNKQIWL+
Sbjct: 24 EEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPA-FGTYVINKQPPNKQIWLA 82
Query: 141 SPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSN 182
SP SGP R+D W+ + L D+L EE+ ++ +
Sbjct: 83 SPLSGPNRFDL--LNGEWVSLRNGTKLTDILTEEVEKAISKS 122
>pdb|2GA5|A Chain A, Yeast Frataxin
Length = 123
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 87 ESLTDYFDVIVEENTHLENA------DVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLS 140
E DY D +++ L A DV GV+T+ GTYVIN+Q PNKQIWL+
Sbjct: 24 EEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPA-FGTYVINKQPPNKQIWLA 82
Query: 141 SPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSN 182
SP SGP R+D W+ + L D+L EE+ ++ +
Sbjct: 83 SPLSGPNRFDL--LNGEWVSLRNGTKLTDILTEEVEKAISKS 122
>pdb|1SOY|A Chain A, Solution Structure Of The Bacterial Frataxin Orthologue,
Cyay
Length = 108
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 113 GVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQ 172
GVLT+ F N +INRQ P Q+WL++ G Y FD + WI ++ DLL+
Sbjct: 39 GVLTITFENG-SKIIINRQEPLHQVWLATKQGG---YHFDLKGDEWICDRSGETFWDLLE 94
Query: 173 EEIVTIVTSNVDF 185
+ V F
Sbjct: 95 QAATQQAGETVSF 107
>pdb|1EW4|A Chain A, Crystal Structure Of Escherichia Coli Cyay Protein Reveals
A Novel Fold For The Frataxin Family
pdb|2EFF|A Chain A, Crystal Structure Analysis Of The Complex Between Cyay And
Co(Ii)
pdb|2P1X|A Chain A, Crystal Structure Analysis Of The Complex Between Cyay And
Eu(Iii)
Length = 106
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 113 GVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQ 172
GVLT+ F N +INRQ P Q+WL++ G Y FD + WI ++ DLL+
Sbjct: 37 GVLTITFENG-SKIIINRQEPLHQVWLATKQGG---YHFDLKGDEWICDRSGETFWDLLE 92
Query: 173 EEIVTIVTSNVDF 185
+ V F
Sbjct: 93 QAATQQAGETVSF 105
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 140 SSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEE 174
+SP+ G R DFDP+R IYKH ++ L E+
Sbjct: 57 ASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEK 91
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 140 SSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEE 174
+SP+ G R DFDP+R IYKH ++ L E+
Sbjct: 57 ASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEK 91
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin
pdb|1OXW|B Chain B, The Crystal Structure Of Semet Patatin
pdb|1OXW|C Chain C, The Crystal Structure Of Semet Patatin
Length = 373
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 89 LTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQ-TPNKQIWLSSPTSGPK 147
L DYFDVI +T G+LT P+ NR K+I GP+
Sbjct: 53 LADYFDVIGGTSTG----------GLLTAXISTPNEN---NRPFAAAKEIVPFYFEHGPQ 99
Query: 148 RYDFDPSRNIWIYKHDNKSLHDLLQEEI 175
F+PS I K+D K L +LQE++
Sbjct: 100 I--FNPSGQILGPKYDGKYLXQVLQEKL 125
>pdb|3BQI|A Chain A, Structure Of A Chondroitin Sulphate Binding Dbl3x From A
Var2csa Encoded Pfemp1 Protein
pdb|3BQK|A Chain A, Structure Of A Chondroitin Sulphate Binding Dbl3x From A
Var2csa Encoded Pfemp1 Protein In Complex With Sulphate
pdb|3BQL|A Chain A, Structure Of A Chondroitin Sulphate Binding Dbl3x Domain
From A Var2csa Encoded Pfemp1 Protein
Length = 360
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 147 KRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSN 188
K+ ++D + + K+ KS DLL+E +++N DF N
Sbjct: 298 KKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFN 339
>pdb|1RII|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|C Chain C, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|D Chain D, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
Length = 265
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 76 PEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYV--INRQTP 133
P E + + L + DVIV D+ G VL V GN V +++ +
Sbjct: 148 PLTECLADVVARFLPYFTDVIV--------GDLRVGKTVLIVAHGNSLRALVKHLDQMSD 199
Query: 134 NKQIWLSSPTSGPKRYDFD 152
++ + L+ PT P RYD D
Sbjct: 200 DEIVGLNIPTGIPLRYDLD 218
>pdb|3CML|A Chain A, Crystal Structure Of The Dbl3x Domain Of The Plasmodium
Falcipurum Var2csa Protein
pdb|3CPZ|A Chain A, Crystal Structure Of Var2csa Dbl3x Domain In The Presence
Of Dodecasaccharide Of Csa
Length = 362
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 147 KRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSN 188
K+ ++D + + K+ KS DLL+E +++N DF N
Sbjct: 297 KKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFN 338
>pdb|2V77|A Chain A, Crystal Structure Of Human Carboxypeptidase A1
pdb|2V77|B Chain B, Crystal Structure Of Human Carboxypeptidase A1
Length = 309
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 85 TLESLTDYFDVIVEENTHL 103
TLE + D+ D++V EN HL
Sbjct: 14 TLEEIYDFLDLLVAENPHL 32
>pdb|3FJU|A Chain A, Ascaris Suum Carboxypeptidase Inhibitor In Complex With
Human Carboxypeptidase A1
Length = 307
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 85 TLESLTDYFDVIVEENTHL 103
TLE + D+ D++V EN HL
Sbjct: 13 TLEEIYDFLDLLVAENPHL 31
>pdb|3I23|A Chain A, Crystal Structure Of An Oxidoreductase (GfoIDHMOCA FAMILY)
From Enterococcus Faecalis. Northeast Structural
Genomics Consortium Target Id Efr167
pdb|3I23|B Chain B, Crystal Structure Of An Oxidoreductase (GfoIDHMOCA FAMILY)
From Enterococcus Faecalis. Northeast Structural
Genomics Consortium Target Id Efr167
Length = 349
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 59 GIHCRNLCSSLTGSISLPEYEVICNETLESLTDYFDV 95
GIH + +L G Y++ NE E++ +YFDV
Sbjct: 176 GIHLXDRXIALFGRPDQVTYDIRNNEVSEAVDNYFDV 212
>pdb|3FD8|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|B Chain B, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|C Chain C, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|D Chain D, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|E Chain E, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|F Chain F, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
Length = 359
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 59 GIHCRNLCSSLTGSISLPEYEVICNETLESLTDYFDV 95
GIH + +L G Y++ NE E++ +YFDV
Sbjct: 178 GIHLXDRXIALFGRPDQVTYDIRNNEVSEAVDNYFDV 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,437,545
Number of Sequences: 62578
Number of extensions: 273066
Number of successful extensions: 757
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 30
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)