Query psy10962
Match_columns 196
No_of_seqs 124 out of 465
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:55:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00446 cyaY frataxin-like pr 100.0 1.9E-41 4.1E-46 262.0 12.1 104 73-185 1-104 (105)
2 PF01491 Frataxin_Cyay: Fratax 100.0 8.6E-42 1.9E-46 264.3 9.8 108 73-185 1-108 (109)
3 cd00503 Frataxin Frataxin is a 100.0 2.2E-41 4.8E-46 261.2 10.8 105 73-185 1-105 (105)
4 TIGR03421 FeS_CyaY iron donor 100.0 1.5E-40 3.2E-45 255.7 11.0 102 74-185 1-102 (102)
5 KOG3413|consensus 100.0 7.4E-40 1.6E-44 266.1 10.5 126 57-185 25-152 (156)
6 PRK01379 cyaY frataxin-like pr 100.0 9.7E-40 2.1E-44 252.1 10.6 101 73-182 1-101 (103)
7 COG1965 CyaY Protein implicate 100.0 2.8E-39 6.1E-44 250.3 10.7 105 73-185 1-105 (106)
8 TIGR03422 mito_frataxin fratax 100.0 2.6E-39 5.7E-44 247.1 9.3 97 77-177 1-97 (97)
9 PF11354 DUF3156: Protein of u 58.4 29 0.00063 29.1 5.7 70 54-136 65-137 (161)
10 PF14088 DUF4268: Domain of un 53.7 22 0.00047 28.0 4.0 62 128-190 21-94 (140)
11 PF07131 DUF1382: Protein of u 50.3 23 0.0005 25.5 3.2 26 65-92 26-51 (61)
12 TIGR02503 type_III_SycN type I 46.8 39 0.00084 27.1 4.4 35 108-143 17-51 (119)
13 PF12073 DUF3553: Protein of u 43.8 30 0.00064 24.2 2.9 21 110-131 23-43 (52)
14 COG4097 Predicted ferric reduc 42.7 20 0.00044 34.4 2.6 25 117-142 300-324 (438)
15 PF00293 NUDIX: NUDIX domain; 41.2 51 0.0011 24.0 4.1 52 125-184 7-62 (134)
16 PF08848 DUF1818: Domain of un 37.8 41 0.00089 27.0 3.3 52 69-121 27-78 (117)
17 PRK00199 ihfB integration host 37.3 1.6E+02 0.0035 21.5 7.1 58 72-141 16-74 (94)
18 PF03991 Prion_octapep: Copper 34.0 20 0.00044 16.2 0.6 6 190-195 1-6 (8)
19 PRK14627 hypothetical protein; 33.6 1.9E+02 0.004 22.2 6.2 77 73-178 1-77 (100)
20 cd04695 Nudix_Hydrolase_36 Mem 32.8 1.5E+02 0.0032 22.3 5.6 56 112-184 3-59 (131)
21 cd04682 Nudix_Hydrolase_23 Mem 32.7 1.7E+02 0.0036 21.6 5.8 59 113-184 2-61 (122)
22 PF00659 POLO_box: POLO box du 31.9 84 0.0018 21.6 3.8 34 106-142 7-40 (68)
23 PF11305 DUF3107: Protein of u 31.4 1.3E+02 0.0028 22.3 4.8 18 113-131 38-55 (74)
24 PF14943 MRP-S26: Mitochondria 30.9 34 0.00073 28.8 1.9 29 85-114 141-169 (170)
25 PF07660 STN: Secretin and Ton 28.9 87 0.0019 20.1 3.3 26 88-117 24-49 (52)
26 cd06407 PB1_NLP A PB1 domain i 28.8 1.1E+02 0.0023 22.6 4.1 40 145-186 39-79 (82)
27 cd06215 FNR_iron_sulfur_bindin 28.7 1.4E+02 0.003 24.4 5.2 61 124-185 74-136 (231)
28 PF02575 YbaB_DNA_bd: YbaB/Ebf 26.6 95 0.0021 22.5 3.5 22 104-126 21-42 (93)
29 PRK14622 hypothetical protein; 26.1 3.1E+02 0.0067 21.1 6.4 42 75-121 3-44 (103)
30 cd04669 Nudix_Hydrolase_11 Mem 25.8 2E+02 0.0043 21.4 5.2 25 162-186 35-59 (121)
31 PF05121 GvpK: Gas vesicle pro 25.5 95 0.0021 23.8 3.3 29 70-99 39-67 (88)
32 cd06497 ACD_alphaA-crystallin_ 25.4 45 0.00097 24.4 1.5 17 104-120 68-85 (86)
33 cd03673 Ap6A_hydrolase Diadeno 25.4 2.4E+02 0.0053 20.4 5.5 24 163-186 38-61 (131)
34 cd03424 ADPRase_NUDT5 ADP-ribo 25.0 2.6E+02 0.0056 20.8 5.8 58 112-183 3-60 (137)
35 cd06471 ACD_LpsHSP_like Group 25.0 60 0.0013 23.4 2.1 15 106-120 78-92 (93)
36 cd04680 Nudix_Hydrolase_21 Mem 24.0 2.6E+02 0.0056 20.1 5.4 53 114-184 3-55 (120)
37 cd03428 Ap4A_hydrolase_human_l 23.9 1.8E+02 0.0039 21.4 4.6 58 110-185 3-60 (130)
38 PRK09438 nudB dihydroneopterin 23.5 2.5E+02 0.0054 21.5 5.5 56 111-183 7-62 (148)
39 PF13619 KTSC: KTSC domain 23.4 49 0.0011 22.6 1.3 43 105-149 8-51 (60)
40 cd04678 Nudix_Hydrolase_19 Mem 23.1 2.8E+02 0.0061 20.4 5.6 25 162-186 38-62 (129)
41 cd06476 ACD_HspB2_like Alpha c 22.9 62 0.0013 23.7 1.9 17 104-120 65-82 (83)
42 cd06398 PB1_Joka2 The PB1 doma 22.4 1.9E+02 0.0042 21.7 4.5 44 145-188 44-87 (91)
43 cd06472 ACD_ScHsp26_like Alpha 22.3 51 0.0011 23.9 1.3 15 106-120 77-91 (92)
44 PHA02102 hypothetical protein 21.3 1.7E+02 0.0037 21.5 3.8 33 84-121 12-44 (72)
45 PF06229 FRG1: FRG1-like famil 21.1 57 0.0012 27.9 1.5 45 111-160 8-52 (191)
46 cd06185 PDR_like Phthalate dio 21.0 1.8E+02 0.0039 23.4 4.4 60 124-186 70-130 (211)
47 cd03429 NADH_pyrophosphatase N 20.7 3E+02 0.0064 20.9 5.4 24 162-185 35-58 (131)
48 cd06470 ACD_IbpA-B_like Alpha- 20.5 75 0.0016 23.1 1.9 14 107-120 76-89 (90)
49 PRK11037 hypothetical protein; 20.1 2.7E+02 0.006 21.1 4.8 41 70-117 5-45 (83)
No 1
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=261.97 Aligned_cols=104 Identities=25% Similarity=0.485 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962 73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD 152 (196)
Q Consensus 73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~ 152 (196)
|||.+||++||++|+.|+++||++ . +.|+|++++||||||+|++ +|+||||||+|++||||||| |||+||+|.
T Consensus 1 m~e~ef~~~ad~~l~~ie~~ld~~-~----~~d~D~e~~~gVLti~f~~-~~~~VINkQ~p~~QIWlas~-sG~~hf~~~ 73 (105)
T PRK00446 1 MNDSEFHQLADALWQAIEEQLDDD-G----DADIDCERNGGVLTLTFEN-GSKIIINRQEPLHELWLAAK-SGGFHFDYK 73 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc-c----CCCeeeeccCCEEEEEECC-CCEEEEeCCCchhheeEecC-CCCccceec
Confidence 899999999999999999999975 2 2679999999999999996 99999999999999999999 999999998
Q ss_pred CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962 153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185 (196)
Q Consensus 153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f 185 (196)
++ +|+++|+|.+|+++|++|+++++|++|.|
T Consensus 74 ~~--~W~~~r~g~~L~~~L~~~~~~~~g~~v~f 104 (105)
T PRK00446 74 DG--EWICDRSGEEFWALLEEAATQQAGEPVSF 104 (105)
T ss_pred CC--eEEECCCCcHHHHHHHHHHHHHcCCceec
Confidence 66 99999999999999999999999999998
No 2
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=100.00 E-value=8.6e-42 Score=264.26 Aligned_cols=108 Identities=42% Similarity=0.770 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962 73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD 152 (196)
Q Consensus 73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~ 152 (196)
||+.+||++||++|+.|+++||++.|+ ..+|+|++++||||||+|++ +|+||||||+|++|||||||+|||+||+|+
T Consensus 1 Mt~~~f~~lad~~l~~i~~~le~~~d~--~~~d~d~e~~~gVLti~~~~-~~~~VINkQ~p~~QIWlsSpisG~~hf~~~ 77 (109)
T PF01491_consen 1 MTESEFHQLADETLDSIEDALEELDDE--QDADIDVERSGGVLTIEFPD-GGQYVINKQPPNRQIWLSSPISGPFHFDYD 77 (109)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTCTTS--SSSTEEEEEETTEEEEEETT-SEEEEEEEECCCTEEEEEETTTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEccCCEEEEEECC-CCEEEEeCCCHHHHHHHhcccCCceEEEEc
Confidence 899999999999999999999998775 34789999999999999985 999999999999999999999999999999
Q ss_pred CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962 153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185 (196)
Q Consensus 153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f 185 (196)
++ +|+++|+|++|+++|++||.+++|.+|+|
T Consensus 78 ~~--~W~~~r~g~~l~~~L~~el~~~~g~~v~~ 108 (109)
T PF01491_consen 78 DG--KWIDTRDGEELFELLEEELSQQLGEPVDF 108 (109)
T ss_dssp SS--SEEETTTTEBHHHHHHHHHHHHHTS---T
T ss_pred CC--EEEECCCCchHHHHHHHHHHHHhCCCeee
Confidence 65 99999999999999999999999999988
No 3
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=100.00 E-value=2.2e-41 Score=261.16 Aligned_cols=105 Identities=33% Similarity=0.589 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962 73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD 152 (196)
Q Consensus 73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~ 152 (196)
|+|.+||++||++|+.|+++||+..+ ..|+|++++||||||+|++ +|+||||||+|+||||||||+ ||+||+|+
T Consensus 1 M~d~~f~~~ad~~l~~i~~~ld~~~~----~~d~D~e~~~gVLti~f~~-~~~~VINkQ~p~~QIWlaSp~-G~~hf~~~ 74 (105)
T cd00503 1 MNESEFHRLADDLLLKIEDTLEEQDD----DADIDVETQGGVLTLTFGN-GSTIVINRQEPLRQIWLASKV-GGYHFDYK 74 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCc----ccCEeeeccCCEEEEEECC-CCEEEEeCCchhhhhheecCC-CCccceec
Confidence 89999999999999999999997643 3789999999999999995 999999999999999999996 99999999
Q ss_pred CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962 153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185 (196)
Q Consensus 153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f 185 (196)
++ +|+++|+|.+|+++|++||++++|++|.|
T Consensus 75 ~~--~W~~~r~g~~L~~~L~~e~~~~~g~~v~f 105 (105)
T cd00503 75 NG--KWICTRSGEELWELLEEECSAQSGEDVEF 105 (105)
T ss_pred CC--EEEECCCCChHHHHHHHHHHHHhCCcccC
Confidence 76 99999999999999999999999999986
No 4
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=100.00 E-value=1.5e-40 Score=255.71 Aligned_cols=102 Identities=29% Similarity=0.508 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEcC
Q psy10962 74 SLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDP 153 (196)
Q Consensus 74 te~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~ 153 (196)
+|.+||++||++|+.|+++||+ .+.|+|++++||||||+|++ +|+||||||+|+|||||||| |||+||+|++
T Consensus 1 ~d~ef~~~ad~~l~~ie~~ld~------~~~d~D~e~~~gVLti~f~~-~~~~VINkQ~p~~QIWlasp-sG~~hF~~~~ 72 (102)
T TIGR03421 1 NESEFHQLAEALLDAIEEAIDD------ADADIDCERAGGVLTLTFEN-GSQIIINKQEPLHQIWLAAK-SGGFHFDYDG 72 (102)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc------cCCCeeeecCCCEEEEEECC-CCEEEEeCCchhhhheeecC-CCCccceecC
Confidence 6899999999999999999984 23689999999999999995 99999999999999999999 9999999987
Q ss_pred CCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962 154 SRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185 (196)
Q Consensus 154 ~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f 185 (196)
+ +|+++|+|.+|+++|++||++++|++|.|
T Consensus 73 ~--~Wi~~r~g~~l~~~L~~~~~~~~g~~v~f 102 (102)
T TIGR03421 73 G--AWIDTRDGEELWALLARACSEQAGEPVVF 102 (102)
T ss_pred C--EEEECCCCcHHHHHHHHHHHHHhCCcccC
Confidence 6 99999999999999999999999999876
No 5
>KOG3413|consensus
Probab=100.00 E-value=7.4e-40 Score=266.11 Aligned_cols=126 Identities=47% Similarity=0.769 Sum_probs=112.3
Q ss_pred ccCccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccc
Q psy10962 57 FTGIHCRNLC-SSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNK 135 (196)
Q Consensus 57 ~~~~~~r~~~-~~~~s~Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~r 135 (196)
.+..+||-+. +.....+++.+||++||+||+.|.|+||++.|+.+ ..++||++++|||||++++ .|||||||||||+
T Consensus 25 ~~~~~~~~~~~~~~~~~~t~~~YhrlAddTLd~L~d~fEdl~e~~~-~~~~Dv~y~~GVLTl~lg~-~GTYViNKQ~Pnk 102 (156)
T KOG3413|consen 25 IFLENFVMSSKLFHSGILTRLEYHRLADDTLDHLSDYFEDLAEEVP-GEGFDVDYADGVLTLKLGS-VGTYVINKQPPNK 102 (156)
T ss_pred HHHHHHHhhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccccccccccceEEEEecC-ceeEEecCCCCcc
Confidence 3445555333 23456789999999999999999999999999853 4789999999999999995 9999999999999
Q ss_pred eeeeccCCCCCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCC-cEEE
Q psy10962 136 QIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTS-NVDF 185 (196)
Q Consensus 136 QIWLSSPiSGp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~-~v~f 185 (196)
|||||||+|||+||||.. .+.||+.|+|..|+++|++|+.++++. +|+|
T Consensus 103 QIWlSSP~SGPkryD~~~-~~~Wiy~r~g~sL~~lL~eEl~k~~s~~~i~~ 152 (156)
T KOG3413|consen 103 QIWLSSPVSGPKRYDLCR-AGEWIYLRDGTSLHELLEEELRKILSKMPIDF 152 (156)
T ss_pred eeeeeCCCCCCccccccc-cCceEEecCCccHHHHHHHHHHHHHhhCccch
Confidence 999999999999999997 469999999999999999999999999 8999
No 6
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=100.00 E-value=9.7e-40 Score=252.10 Aligned_cols=101 Identities=28% Similarity=0.523 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962 73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD 152 (196)
Q Consensus 73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~ 152 (196)
|+|+|||++||++|+.|+++||+. +.+.++|+++++|||||+|+ +|+||||||+|+||||||||+|||+||+|+
T Consensus 1 M~~~ef~~lad~~L~~ie~~ie~~----~~d~d~D~e~~~gVLtl~~~--~gt~VINkQ~p~~QIWlASp~sG~~hF~y~ 74 (103)
T PRK01379 1 MNNSEFSKIAETTIAYIADKIEEQ----DKEASIDVDLQGDILNLDTD--KGIYVINKQSAAKEIWLSSPVSGPYHFFYE 74 (103)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc----CCCcceeeeccCCEEEEEeC--CcEEEEeCCChhhhheeecccCCCcceecC
Confidence 899999999999999999999963 23467999999999999996 477999999999999999999999999998
Q ss_pred CCCCceEEcCCCccHHHHHHHHHHhhcCCc
Q psy10962 153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSN 182 (196)
Q Consensus 153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~ 182 (196)
++ +|+ +|+|.+|+++|++||++++|+.
T Consensus 75 ~g--~W~-~r~g~el~~~L~~e~~~~~~~~ 101 (103)
T PRK01379 75 QG--KWK-NRAGLELMAILTEELNIKFDTR 101 (103)
T ss_pred CC--eeE-ECCCchHHHHHHHHHHHHhCcC
Confidence 76 999 8999999999999999999864
No 7
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-39 Score=250.34 Aligned_cols=105 Identities=30% Similarity=0.563 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962 73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD 152 (196)
Q Consensus 73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~ 152 (196)
|++++||++||++|..|+|.||+..++ .|+|++..||||||+|++ +|+||||||+|++|||||||++| +||+|.
T Consensus 1 mn~~efh~lad~~~~~Ied~le~~~~~----~d~D~d~qg~VlTl~f~n-gs~iiINkQ~P~~qiWlAs~~gG-~HF~y~ 74 (106)
T COG1965 1 MNESEFHRLADALLLKIEDQLDEQDDE----GDIDCEIQGGVLTLTFDN-GSQIIINKQEPLQQIWLASKVGG-YHFDYK 74 (106)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccC----CCcceecCCCEEEEEECC-CcEEEEeCCChHHHHHhhccCCC-ceeEee
Confidence 899999999999999999999987554 679999999999999996 99999999999999999999766 999999
Q ss_pred CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962 153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185 (196)
Q Consensus 153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f 185 (196)
.+ .|+++|+|.+|+.+|++|+++++|++|.|
T Consensus 75 ~g--~W~~~rsg~~f~~~L~e~~~~~~~~~v~f 105 (106)
T COG1965 75 NG--EWISTRSGEEFWDLLEEALSAQSGEDVEF 105 (106)
T ss_pred CC--EEEECCCCCcHHHHHHHHHHHHcCCCcCc
Confidence 86 99999999999999999999999999987
No 8
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=100.00 E-value=2.6e-39 Score=247.05 Aligned_cols=97 Identities=49% Similarity=0.826 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEcCCCC
Q psy10962 77 EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRN 156 (196)
Q Consensus 77 eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~~~~ 156 (196)
|||++||++|+.|+++||++.|. +.+.++|++++||||||+|++ +||||||||+|+||||||||+|||+||+|+++
T Consensus 1 ef~~~ad~~L~~ie~~le~~~d~-~~d~~~D~e~~~gVLti~~~~-~~~~VINkQ~p~~QIWlsSp~sGp~hfd~~~~-- 76 (97)
T TIGR03422 1 EYHKVADEYLDHLLDKLEELGES-RPDLDFDVEYSSGVLTLELPS-VGTYVINKQPPNKQIWLSSPVSGPKRYDYVNG-- 76 (97)
T ss_pred ChHHHHHHHHHHHHHHHHhhccc-ccccccccccCCCEEEEEECC-CCEEEEeCCChhhHHheecCCCCCcceeecCC--
Confidence 69999999999999999987665 222334999999999999985 99999999999999999999999999999876
Q ss_pred ceEEcCCCccHHHHHHHHHHh
Q psy10962 157 IWIYKHDNKSLHDLLQEEIVT 177 (196)
Q Consensus 157 ~Wi~tRdg~eL~~lLs~Els~ 177 (196)
+|+++|+|.+|+++|++||++
T Consensus 77 ~Wi~~r~g~~L~~~L~~e~~~ 97 (97)
T TIGR03422 77 EWIYLRDGSSLTELLEEELSK 97 (97)
T ss_pred EEEECCCCChHHHHHHHHHcC
Confidence 999999999999999999864
No 9
>PF11354 DUF3156: Protein of unknown function (DUF3156); InterPro: IPR021500 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=58.42 E-value=29 Score=29.10 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=47.6
Q ss_pred cccccCccccccCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcC
Q psy10962 54 VLNFTGIHCRNLCSSLTGSISLPEYEVICNETLES---LTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130 (196)
Q Consensus 54 ~~~~~~~~~r~~~~~~~s~Mte~eF~~lAD~tL~~---Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINk 130 (196)
.+.++++.|+... -++.. ..+.+ .|+. |.++|+.+ +...+.++..+|.=+++++.=++..||||
T Consensus 65 ~lrR~~v~~~~~~------g~~~~-~~l~~-~L~~~p~L~~aL~~L-----df~~l~l~~~~g~W~l~IepfgaSEVV~r 131 (161)
T PF11354_consen 65 WLRRTGVAFRAKQ------GDDAA-QRLIA-ALNADPALQQALMPL-----DFRRLTLDVDDGRWTLEIEPFGASEVVNR 131 (161)
T ss_pred eeeEcceEEEECC------CCchH-HHHHH-HHhhCHHHHHHHhhc-----ChhhEEEEEeCCEEEEEEEEcccceEeec
Confidence 4456777777443 24444 45543 3334 66666654 23577888899999999985578999999
Q ss_pred CCccce
Q psy10962 131 QTPNKQ 136 (196)
Q Consensus 131 Q~P~rQ 136 (196)
-||.+.
T Consensus 132 mP~~RR 137 (161)
T PF11354_consen 132 MPAFRR 137 (161)
T ss_pred CCccce
Confidence 998764
No 10
>PF14088 DUF4268: Domain of unknown function (DUF4268)
Probab=53.70 E-value=22 Score=27.97 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=41.5
Q ss_pred EcCCCccceeeeccCC-CCCcceeEcCCC-----CceEEcCC---CccHHHHH---HHHHHhhcCCcEEEeeccc
Q psy10962 128 INRQTPNKQIWLSSPT-SGPKRYDFDPSR-----NIWIYKHD---NKSLHDLL---QEEIVTIVTSNVDFYSNCS 190 (196)
Q Consensus 128 INkQ~P~rQIWLSSPi-SGp~hFdy~~~~-----~~Wi~tRd---g~eL~~lL---s~Els~~~G~~v~f~~~~~ 190 (196)
++...|..+=|+.-+. .++.+|.+.-.. +-.|+..+ +..+++.| .++|.+.+|.++.+ ..+|
T Consensus 21 ~~~~~p~~~~W~~~~~G~sg~~~~~~~~~~~~~V~l~I~~~d~~~n~~~fe~L~~~k~~IE~~~g~~l~W-~~l~ 94 (140)
T PF14088_consen 21 FSNRKPSPDHWINYSTGISGVSLSFVFNKKRARVELYIDRPDKEENKEIFEQLKSQKEEIEEEFGEELEW-ERLD 94 (140)
T ss_pred cccCCCCCCcceEecCCCCCEEEEEEEeCCEEEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEe-eeCC
Confidence 5778999999988763 123555444332 23555555 55666665 56899999999999 5555
No 11
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=50.30 E-value=23 Score=25.47 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=21.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy10962 65 LCSSLTGSISLPEYEVICNETLESLTDY 92 (196)
Q Consensus 65 ~~~~~~s~Mte~eF~~lAD~tL~~Iee~ 92 (196)
|+| ....+|.|||.++.+....|+..
T Consensus 26 FVp--iPv~~dee~~~L~s~~~~kLe~m 51 (61)
T PF07131_consen 26 FVP--IPVVTDEEFHTLSSQLSQKLERM 51 (61)
T ss_pred eec--cccccHHHHHHHHHHHHHHHHHH
Confidence 776 66789999999999999888664
No 12
>TIGR02503 type_III_SycN type III secretion chaperone SycN. Members of this protein family are part of the machinery of bacterial type III secretion in a number of bacteria that target animal cells. In the well-studied system from Yersinia, a complex of this protein (SycN) and YscB (pfam07329) acts as a chaperone for the export of YopN (PubMed:10094626). YopN then acts to control effector protein secretion, in response to calcium levels, so that secretion occurs only after contact with the targeted eukaryotic cell.
Probab=46.85 E-value=39 Score=27.14 Aligned_cols=35 Identities=9% Similarity=0.215 Sum_probs=29.4
Q ss_pred eeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCC
Q psy10962 108 VTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPT 143 (196)
Q Consensus 108 vd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPi 143 (196)
++...++++++|++ .|+.-|-++.=--=+|||-|+
T Consensus 17 ~~~~~~~i~l~~e~-~gtL~iE~~~~~L~L~LAr~~ 51 (119)
T TIGR02503 17 PAPLPRLAQLSMEQ-SGRLYVEQHDGTLLLWLARSL 51 (119)
T ss_pred CCCCCcceEEEecC-CcEEEEEecCCEEEEEEeccC
Confidence 34466699999996 899999998888889999886
No 13
>PF12073 DUF3553: Protein of unknown function (DUF3553); InterPro: IPR021938 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 60 amino acids in length. This protein has two conserved sequence motifs: GQVQS and TVNF.
Probab=43.78 E-value=30 Score=24.18 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.1
Q ss_pred ecCcEEEEEEcCCCcEEEEcCC
Q psy10962 110 YGDGVLTVNFGNPHGTYVINRQ 131 (196)
Q Consensus 110 ~sgGVLTI~f~~~~gtyVINkQ 131 (196)
..+|-+|+.|++ -|+-|||..
T Consensus 23 ~i~~rvTVnF~~-aGK~vI~~~ 43 (52)
T PF12073_consen 23 NIGGRVTVNFEH-AGKKVIDGS 43 (52)
T ss_pred ecCCeEEEeecc-CCeEEEecc
Confidence 468899999996 899999864
No 14
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=42.67 E-value=20 Score=34.41 Aligned_cols=25 Identities=20% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEcCCCcEEEEcCCCccceeeeccC
Q psy10962 117 VNFGNPHGTYVINRQTPNKQIWLSSP 142 (196)
Q Consensus 117 I~f~~~~gtyVINkQ~P~rQIWLSSP 142 (196)
++++++.|+|.+.++.|+ |||+|.-
T Consensus 300 ~~vdGPYG~F~~~~g~~~-QVWIAGG 324 (438)
T COG4097 300 LEVDGPYGKFDFERGLNT-QVWIAGG 324 (438)
T ss_pred EEEecCcceeecccCCcc-cEEEecC
Confidence 344456999999999999 9999864
No 15
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=41.22 E-value=51 Score=23.95 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=33.2
Q ss_pred EEEEcCCCccceeeeccCCC----CCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCCcEE
Q psy10962 125 TYVINRQTPNKQIWLSSPTS----GPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVD 184 (196)
Q Consensus 125 tyVINkQ~P~rQIWLSSPiS----Gp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~ 184 (196)
-+|+|.+. +++|--+.. ++.++.+-++ .++ .|+++.+.+.+|+.+-+|.++.
T Consensus 7 ~ii~~~~~---~vLl~~r~~~~~~~~~~~~~pgG---~i~--~~E~~~~aa~REl~EE~g~~~~ 62 (134)
T PF00293_consen 7 VIIFNEDG---KVLLIKRSRSPITFPGYWELPGG---GIE--PGESPEEAARRELKEETGLDVS 62 (134)
T ss_dssp EEEEETTT---EEEEEEESTTSSSSTTEEESSEE---EEC--TTSHHHHHHHHHHHHHHSEEEE
T ss_pred EEEEeCCc---EEEEEEecCCCCCCCCeEeccee---eEE--cCCchhhhHHhhhhhcccceec
Confidence 34455444 555553222 2344544333 554 4999999999999999998873
No 16
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=37.82 E-value=41 Score=27.01 Aligned_cols=52 Identities=13% Similarity=0.251 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcC
Q psy10962 69 LTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGN 121 (196)
Q Consensus 69 ~~s~Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~ 121 (196)
-+..||+.||..++ .+|.+|.+.+..+.++--+...+.++...+.+-+++++
T Consensus 27 WAiELT~~E~~~f~-~Ll~~L~~q~~~i~~eLM~EE~I~lE~E~~~~W~eleG 78 (117)
T PF08848_consen 27 WAIELTEAEFNDFC-RLLQQLAEQMQAIADELMDEESITLEAESDLWWMELEG 78 (117)
T ss_dssp EEEEE-HHHHHHHH-HHHHHHHHHHHCCHTTSSTTSEEEEEEEETTEEEEEEE
T ss_pred hheeecHHHHHHHH-HHHHHHHHHHHHHHHHhcchhhheeeeccccEEEEecc
Confidence 34689999999998 67777888777665542233456666666666666653
No 17
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=37.34 E-value=1.6e+02 Score=21.46 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecC-cEEEEEEcCCCcEEEEcCCCccceeeecc
Q psy10962 72 SISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGD-GVLTVNFGNPHGTYVINRQTPNKQIWLSS 141 (196)
Q Consensus 72 ~Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sg-GVLTI~f~~~~gtyVINkQ~P~rQIWLSS 141 (196)
.++..+=..+.|.+++.|.++|.+ +-.|.+.| |.+++..- ......|.++ ...|.+.+
T Consensus 16 ~~s~~~~~~vv~~~~~~i~~~L~~---------g~~V~l~gfG~F~~~~r--~~r~~~np~T-ge~i~i~~ 74 (94)
T PRK00199 16 HLSAKDVENAVKEILEEMSDALAR---------GDRIEIRGFGSFSLHYR--PPRVGRNPKT-GEKVELEE 74 (94)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHc---------CCeEEEcCCEEEEEEEe--cCeeccCcCC-CCEEEEcC
Confidence 567777777788888887777663 22455544 66666653 2455556654 56667766
No 18
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=33.98 E-value=20 Score=16.24 Aligned_cols=6 Identities=33% Similarity=0.640 Sum_probs=5.0
Q ss_pred ccCCCC
Q psy10962 190 SHSGKH 195 (196)
Q Consensus 190 ~~~~~~ 195 (196)
||+|+|
T Consensus 1 phgG~W 6 (8)
T PF03991_consen 1 PHGGGW 6 (8)
T ss_pred CCCCcC
Confidence 788888
No 19
>PRK14627 hypothetical protein; Provisional
Probab=33.61 E-value=1.9e+02 Score=22.18 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962 73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD 152 (196)
Q Consensus 73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~ 152 (196)
|+-.++.+.|.+.-..+++.=+++. ...++....||.++|++.+ .+++ .-|.+..
T Consensus 1 mn~~~~mkqaq~mQ~km~~~Q~el~-----~~~veg~sggG~VkV~~~G-~~~v--------~~i~Idp----------- 55 (100)
T PRK14627 1 MNQRQLMQMAQQMQRQMQKVQEELA-----ATIVEGTAGGGAITVKMNG-HREV--------QSITISP----------- 55 (100)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh-----ccEEEEEEcCCeEEEEEEc-CccE--------EEEEECH-----------
Confidence 3455666666665555554444432 2467778889999999964 3332 1233332
Q ss_pred CCCCceEEcCCCccHHHHHHHHHHhh
Q psy10962 153 PSRNIWIYKHDNKSLHDLLQEEIVTI 178 (196)
Q Consensus 153 ~~~~~Wi~tRdg~eL~~lLs~Els~~ 178 (196)
. =++..|-+.|.++|...+.+.
T Consensus 56 -~---ll~~ed~e~LeDLI~aA~N~A 77 (100)
T PRK14627 56 -E---VVDPDDVEMLQDLLLVAINDA 77 (100)
T ss_pred -H---HcCcccHHHHHHHHHHHHHHH
Confidence 1 234456667777777666554
No 20
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=32.77 E-value=1.5e+02 Score=22.32 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=37.0
Q ss_pred CcEEEEEEcCCCcEEEE-cCCCccceeeeccCCCCCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCCcEE
Q psy10962 112 DGVLTVNFGNPHGTYVI-NRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVD 184 (196)
Q Consensus 112 gGVLTI~f~~~~gtyVI-NkQ~P~rQIWLSSPiSGp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~ 184 (196)
|+|+-...++ .+.+++ .|..+...-|. -| | .++. .|++..+.+.+|+.+-+|..+.
T Consensus 3 ~~v~~~~~~~-~~~vLl~~r~~~~~g~w~-~P--g-----------G~ve--~gEs~~~aa~RE~~EEtGl~~~ 59 (131)
T cd04695 3 SGVLLRSLDK-ETKVLLLKRVKTLGGFWC-HV--A-----------GGVE--AGETAWQAALRELKEETGISLP 59 (131)
T ss_pred eEEEEEEcCC-CCEEEEEEecCCCCCcEE-CC--c-----------cccc--CCCCHHHHHHHHHHHHhCCCcc
Confidence 5677777664 566555 44433233343 23 2 3564 7889999999999999998764
No 21
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=32.74 E-value=1.7e+02 Score=21.63 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCcEEEEcCCCcc-ceeeeccCCCCCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCCcEE
Q psy10962 113 GVLTVNFGNPHGTYVINRQTPN-KQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVD 184 (196)
Q Consensus 113 GVLTI~f~~~~gtyVINkQ~P~-rQIWLSSPiSGp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~ 184 (196)
||..+-+-+ .|++++-++... +.. .|-+|++-.+ .. ..|+++.+.+.+|+.+-+|..+.
T Consensus 2 ~v~~~~~~~-~g~vLl~~r~~~~~~~-------~~g~w~~PgG--~v---e~gE~~~~aa~RE~~EE~Gl~~~ 61 (122)
T cd04682 2 GVALALLIG-DGRLLLQLRDDKPGIP-------YPGHWDLPGG--HR---EGGETPLECVLRELLEEIGLTLP 61 (122)
T ss_pred ceEEEEEEc-CCEEEEEEccCCCCCC-------CCCcEeCCCc--cc---cCCCCHHHHHHHHHHHHhCCccc
Confidence 344555544 378777776543 211 1223444333 22 35889999999999999999874
No 22
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=31.91 E-value=84 Score=21.61 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=23.4
Q ss_pred cceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccC
Q psy10962 106 ADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSP 142 (196)
Q Consensus 106 ~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSP 142 (196)
+=..+++|.+.+.|. |+.++|++ +..+-|+.-.|
T Consensus 7 i~~~LSng~vqv~Fn-D~tkivl~--~~~~~v~yi~~ 40 (68)
T PF00659_consen 7 IGYQLSNGTVQVNFN-DHTKIVLS--PDGRLVTYIDR 40 (68)
T ss_dssp EEEEETTSEEEEEET-TS-EEEEE--TTCCEEEEE-T
T ss_pred EEEEEeCCCEEEEEe-CCCEEEEC--CCCCEEEEECC
Confidence 445789999999998 49999994 33446666554
No 23
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=31.37 E-value=1.3e+02 Score=22.29 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=13.6
Q ss_pred cEEEEEEcCCCcEEEEcCC
Q psy10962 113 GVLTVNFGNPHGTYVINRQ 131 (196)
Q Consensus 113 GVLTI~f~~~~gtyVINkQ 131 (196)
++|+|+-+. |-+|+|...
T Consensus 38 ~~l~LtD~k-Gr~~lVp~~ 55 (74)
T PF11305_consen 38 GVLTLTDEK-GRRVLVPAA 55 (74)
T ss_pred ceEEEEeCC-CCEEEEECC
Confidence 799998763 778888643
No 24
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=30.94 E-value=34 Score=28.81 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhcccCCCcceeecCcE
Q psy10962 85 TLESLTDYFDVIVEENTHLENADVTYGDGV 114 (196)
Q Consensus 85 tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGV 114 (196)
|.+.|+++||+++|+ +.+=.|-||..|++
T Consensus 141 T~ENLd~~IeeALdn-p~~YNfaID~~G~~ 169 (170)
T PF14943_consen 141 TRENLDAAIEEALDN-PVDYNFAIDLEGNI 169 (170)
T ss_pred CHHhHHHHHHHHHcC-CcccceeeCCCCCc
Confidence 456788888888877 44445666767765
No 25
>PF07660 STN: Secretin and TonB N terminus short domain; InterPro: IPR011662 This is a conserved region found at the N-terminal region of bacterial proteins involved in either protein secretion or the uptake of selective substrates, including: Bundle-forming pilus protein B, an outer-membrane protein absolutely required for pilus biogenesis, and for enteropathogenic Escherichia coli localized adherence and autoaggregation []. PilQ, which is required for type IV pilus biogenesis and competence and is thought to function both as a pore for exit of the pilus and as a channel for entry of haem and antimicrobial agents and uptake of transforming DNA []. PupB, a specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions []. TonB, which couples the electrochemical potential of the cytoplasmic membrane to the active transport of iron-siderophores and vitamin B12 across the outer membrane []. ; GO: 0019867 outer membrane; PDB: 2D1U_A 1ZZV_A 2W75_B 2O5P_A 2W77_A 2W16_A 2W6U_B 2W6T_A 2W76_B 2W78_B ....
Probab=28.87 E-value=87 Score=20.09 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhcccCCCcceeecCcEEEE
Q psy10962 88 SLTDYFDVIVEENTHLENADVTYGDGVLTV 117 (196)
Q Consensus 88 ~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI 117 (196)
.|+++|+.++.. -++.+...|+++.|
T Consensus 24 ~~~~~L~~ll~~----t~l~y~~~~~~i~I 49 (52)
T PF07660_consen 24 SLEEALDQLLKG----TGLTYKISGNTIVI 49 (52)
T ss_dssp -HHHHHHHHTTT----STEEEEEETTEEEE
T ss_pred CHHHHHHHHHcc----CCcEEEEECCEEEE
Confidence 456666666543 45555555555554
No 26
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=28.82 E-value=1.1e+02 Score=22.58 Aligned_cols=40 Identities=8% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCCc-EEEe
Q psy10962 145 GPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSN-VDFY 186 (196)
Q Consensus 145 Gp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~-v~f~ 186 (196)
+++.-.|.++.|.|+.-....+|.+.+. +....+.+ |+++
T Consensus 39 ~~f~LkY~Ddegd~v~ltsd~DL~eai~--i~~~~~~~~v~l~ 79 (82)
T cd06407 39 SAFDLKYLDDDEEWVLLTCDADLEECID--VYRSSGSHTIRLL 79 (82)
T ss_pred CeeEEEEECCCCCeEEeecHHHHHHHHH--HHHHCCCCeEEEE
Confidence 6788889999999999999999999987 44444444 7765
No 27
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=28.74 E-value=1.4e+02 Score=24.40 Aligned_cols=61 Identities=10% Similarity=0.195 Sum_probs=32.8
Q ss_pred cEEEEcCCCccceeeeccCCCCCcceeEc-CCCCceEEcCCCc-cHHHHHHHHHHhhcCCcEEE
Q psy10962 124 GTYVINRQTPNKQIWLSSPTSGPKRYDFD-PSRNIWIYKHDNK-SLHDLLQEEIVTIVTSNVDF 185 (196)
Q Consensus 124 gtyVINkQ~P~rQIWLSSPiSGp~hFdy~-~~~~~Wi~tRdg~-eL~~lLs~Els~~~G~~v~f 185 (196)
++|+.++-.|...|++.-|. |.+.+... .+.--+|..-+|. .+..+|.+.+...-..+|.|
T Consensus 74 s~~l~~~~~~G~~v~i~gP~-G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l 136 (231)
T cd06215 74 SNWLHDNLKVGDELWASGPA-GEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVF 136 (231)
T ss_pred hHHHHhcCCCCCEEEEEcCc-ceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEE
Confidence 45555566677778877773 65444322 1212356666665 46666665554433344554
No 28
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=26.58 E-value=95 Score=22.48 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=15.7
Q ss_pred CCcceeecCcEEEEEEcCCCcEE
Q psy10962 104 ENADVTYGDGVLTVNFGNPHGTY 126 (196)
Q Consensus 104 ~d~Dvd~sgGVLTI~f~~~~gty 126 (196)
..+.....+|.+++++++ .|.+
T Consensus 21 ~~~~~~s~~g~V~V~v~g-~g~v 42 (93)
T PF02575_consen 21 IEVTGTSGDGLVTVTVNG-NGEV 42 (93)
T ss_dssp SEEEEEETCCTEEEEEET-TS-E
T ss_pred CEEEEEECCCEEEEEEec-CceE
Confidence 457777889999999975 4543
No 29
>PRK14622 hypothetical protein; Provisional
Probab=26.10 E-value=3.1e+02 Score=21.12 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcC
Q psy10962 75 LPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGN 121 (196)
Q Consensus 75 e~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~ 121 (196)
-.+..+.|.+.=..+.+.=+++. ...++.+..||.++|++.+
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~-----~~~v~g~sggG~VkV~~nG 44 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLA-----EIAVEAESGGGLVKVAMNG 44 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----ccEEEEEECCceEEEEEEc
Confidence 34455555554444444433332 2467778889999999964
No 30
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=25.83 E-value=2e+02 Score=21.42 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=22.1
Q ss_pred CCCccHHHHHHHHHHhhcCCcEEEe
Q psy10962 162 HDNKSLHDLLQEEIVTIVTSNVDFY 186 (196)
Q Consensus 162 Rdg~eL~~lLs~Els~~~G~~v~f~ 186 (196)
..|+++.+.+.+|+.+-+|..+...
T Consensus 35 e~gEs~~~a~~REl~EEtGl~~~~~ 59 (121)
T cd04669 35 EEGETPEEAAKREALEELGLDVRVE 59 (121)
T ss_pred cCCCCHHHHHHHHHHHhhCeeEeee
Confidence 4689999999999999999988764
No 31
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=25.48 E-value=95 Score=23.82 Aligned_cols=29 Identities=28% Similarity=0.388 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10962 70 TGSISLPEYEVICNETLESLTDYFDVIVEE 99 (196)
Q Consensus 70 ~s~Mte~eF~~lAD~tL~~Iee~LE~~~d~ 99 (196)
...+|+.+-.++.. +|..|+++++++.+.
T Consensus 39 ~G~Lse~qiErlG~-tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 39 AGSLSEEQIERLGE-TLMKLEEAMEELCER 67 (88)
T ss_pred cCCCCHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 46789999999996 999999999998765
No 32
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=25.37 E-value=45 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=13.5
Q ss_pred CCcceee-cCcEEEEEEc
Q psy10962 104 ENADVTY-GDGVLTVNFG 120 (196)
Q Consensus 104 ~d~Dvd~-sgGVLTI~f~ 120 (196)
+.+...+ .+|||+|+++
T Consensus 68 ~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 68 SAITCSLSADGMLTFSGP 85 (86)
T ss_pred HHeEEEeCCCCEEEEEec
Confidence 3466787 7999999986
No 33
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=25.36 E-value=2.4e+02 Score=20.43 Aligned_cols=24 Identities=4% Similarity=-0.046 Sum_probs=21.0
Q ss_pred CCccHHHHHHHHHHhhcCCcEEEe
Q psy10962 163 DNKSLHDLLQEEIVTIVTSNVDFY 186 (196)
Q Consensus 163 dg~eL~~lLs~Els~~~G~~v~f~ 186 (196)
.|+++.+.+.+|+.+-+|..+...
T Consensus 38 ~gEs~~~aa~REl~EEtGl~~~~~ 61 (131)
T cd03673 38 PGETPPEAAVREVEEETGIRAEVG 61 (131)
T ss_pred CCCCHHHHHHHHHhhhhCCceEec
Confidence 588999999999999999887653
No 34
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=25.03 E-value=2.6e+02 Score=20.84 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=36.1
Q ss_pred CcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCCcE
Q psy10962 112 DGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNV 183 (196)
Q Consensus 112 gGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v 183 (196)
.+|.-+-+.+ .+++++-+|... | .++.+|++-.+ .++ .|+++.+.+.+|+.+-+|..+
T Consensus 3 ~~v~v~~~~~-~~~iLl~~~~~~-------~-~~~~~w~~PgG---~ve--~gEs~~~aa~RE~~EE~Gl~~ 60 (137)
T cd03424 3 DAVAVLPYDD-DGKVVLVRQYRP-------P-VGGWLLELPAG---LID--PGEDPEEAARRELEEETGYEA 60 (137)
T ss_pred CEEEEEEEcC-CCeEEEEEeeec-------C-CCCEEEEeCCc---cCC--CCCCHHHHHHHHHHHHHCCCc
Confidence 3455555553 466666554211 1 13344555433 554 488999999999999999887
No 35
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=25.00 E-value=60 Score=23.39 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=12.6
Q ss_pred cceeecCcEEEEEEc
Q psy10962 106 ADVTYGDGVLTVNFG 120 (196)
Q Consensus 106 ~Dvd~sgGVLTI~f~ 120 (196)
+...+.+|||+|+++
T Consensus 78 i~A~~~dGvL~I~lP 92 (93)
T cd06471 78 IKAKYENGVLKITLP 92 (93)
T ss_pred CEEEEECCEEEEEEc
Confidence 566789999999986
No 36
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=24.04 E-value=2.6e+02 Score=20.08 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=34.9
Q ss_pred EEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCCcEE
Q psy10962 114 VLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVD 184 (196)
Q Consensus 114 VLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~ 184 (196)
|..+-+.. .|++++-++.... .|. +-.+ .+ ..|+++.+.+.+|+.+-+|..+.
T Consensus 3 ~~~~i~~~-~~~vLL~~r~~~~-~w~-----------~PgG---~v--e~gEt~~~aa~REl~EEtG~~~~ 55 (120)
T cd04680 3 ARAVVTDA-DGRVLLVRHTYGP-GWY-----------LPGG---GL--ERGETFAEAARRELLEELGIRLA 55 (120)
T ss_pred eEEEEECC-CCeEEEEEECCCC-cEe-----------CCCC---cC--CCCCCHHHHHHHHHHHHHCCccc
Confidence 44455553 5677777664332 343 2212 33 36889999999999999998876
No 37
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=23.90 E-value=1.8e+02 Score=21.37 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=36.7
Q ss_pred ecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962 110 YGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185 (196)
Q Consensus 110 ~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f 185 (196)
++-|++.+...++...+++=++.. --|. -| .+ ++. .|+++.+.+.+|+.+-+|..+..
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~--~~w~-~P----------gG---~ve--~gEs~~~aa~REl~EEtGl~~~~ 60 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY--GHWD-FP----------KG---HVE--PGEDDLEAALRETEEETGITAEQ 60 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC--CcCc-CC----------cC---CCC--CCCCHHHHHHHHHHHHHCCChhh
Confidence 345666666654344555555554 2232 22 22 443 58899999999999999988664
No 38
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=23.52 E-value=2.5e+02 Score=21.51 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=34.9
Q ss_pred cCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCCcE
Q psy10962 111 GDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNV 183 (196)
Q Consensus 111 sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v 183 (196)
..+|.-+-+.. .|++++-++....-.|- .| +| .++ .|+++.+.+.+|+.+-+|..+
T Consensus 7 ~~~v~~vi~~~-~~~vLl~~r~~~~~~W~-lP----------gG---~ve--~gEs~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 7 PVSVLVVIYTP-DLGVLMLQRADDPDFWQ-SV----------TG---SLE--EGETPAQTAIREVKEETGIDV 62 (148)
T ss_pred ceEEEEEEEeC-CCeEEEEEecCCCCcEe-CC----------cc---cCC--CCCCHHHHHHHHHHHHhCcCc
Confidence 34555566653 46665654433222342 23 12 233 589999999999999999987
No 39
>PF13619 KTSC: KTSC domain
Probab=23.36 E-value=49 Score=22.63 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=29.5
Q ss_pred CcceeecCcEEEEEEcCCCcEEEEcCCCc-cceeeeccCCCCCcce
Q psy10962 105 NADVTYGDGVLTVNFGNPHGTYVINRQTP-NKQIWLSSPTSGPKRY 149 (196)
Q Consensus 105 d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P-~rQIWLSSPiSGp~hF 149 (196)
-++.|....+|.|+|.+ |+.|.--.=|| .-|-+++|| |-+..|
T Consensus 8 ~v~Yd~~~~~L~V~F~~-G~~Y~Y~~Vp~~~~~~l~~A~-S~g~f~ 51 (60)
T PF13619_consen 8 SVGYDPETRTLEVEFKS-GSVYRYFGVPPEVYEALLNAP-SKGRFF 51 (60)
T ss_pred EEeECCCCCEEEEEEcC-CCEEEECCCCHHHHHHHHcCC-CHHHHH
Confidence 35566678899999985 77777665555 566777776 444433
No 40
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=23.12 E-value=2.8e+02 Score=20.39 Aligned_cols=25 Identities=8% Similarity=0.104 Sum_probs=21.5
Q ss_pred CCCccHHHHHHHHHHhhcCCcEEEe
Q psy10962 162 HDNKSLHDLLQEEIVTIVTSNVDFY 186 (196)
Q Consensus 162 Rdg~eL~~lLs~Els~~~G~~v~f~ 186 (196)
..|+++.+.+.+|+.+-+|.++...
T Consensus 38 e~gEt~~~Aa~REl~EE~Gl~~~~~ 62 (129)
T cd04678 38 EFGESFEECAAREVLEETGLHIENV 62 (129)
T ss_pred cCCCCHHHHHHHHHHHHhCCcccce
Confidence 4789999999999999999886543
No 41
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=22.94 E-value=62 Score=23.66 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.5
Q ss_pred CCcceeec-CcEEEEEEc
Q psy10962 104 ENADVTYG-DGVLTVNFG 120 (196)
Q Consensus 104 ~d~Dvd~s-gGVLTI~f~ 120 (196)
..+...+. +|||+|+++
T Consensus 65 ~~v~A~~~~dGvL~I~~P 82 (83)
T cd06476 65 LLVRASLSHDGILCIQAP 82 (83)
T ss_pred hhEEEEecCCCEEEEEec
Confidence 45667785 999999986
No 42
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=22.43 E-value=1.9e+02 Score=21.73 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=35.7
Q ss_pred CCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCCcEEEeec
Q psy10962 145 GPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSN 188 (196)
Q Consensus 145 Gp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f~~~ 188 (196)
+.+-..|.++.|.|+.-.+..+|.+.+....+..-+.++.+.-.
T Consensus 44 ~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~ 87 (91)
T cd06398 44 ADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVT 87 (91)
T ss_pred CcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEEE
Confidence 56788899999999999999999999998777666666766433
No 43
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=22.29 E-value=51 Score=23.88 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.4
Q ss_pred cceeecCcEEEEEEc
Q psy10962 106 ADVTYGDGVLTVNFG 120 (196)
Q Consensus 106 ~Dvd~sgGVLTI~f~ 120 (196)
+...+.+|||+|+++
T Consensus 77 i~A~~~nGvL~I~lP 91 (92)
T cd06472 77 VKAFLENGVLTVTVP 91 (92)
T ss_pred CEEEEECCEEEEEec
Confidence 456778999999986
No 44
>PHA02102 hypothetical protein
Probab=21.33 E-value=1.7e+02 Score=21.52 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcC
Q psy10962 84 ETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGN 121 (196)
Q Consensus 84 ~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~ 121 (196)
-.|++|...++++..+ .++-++..+. =.|+|++
T Consensus 12 ~eLqkLl~eV~dlAse----~~yGvein~~-nev~f~D 44 (72)
T PHA02102 12 LELQKLLKEVKDLASE----QDYGVEINDD-NEVRFED 44 (72)
T ss_pred HHHHHHHHHHHHHhhh----hccceeeCCC-CcEeHHH
Confidence 4567777777776544 4566666552 2356653
No 45
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=21.06 E-value=57 Score=27.88 Aligned_cols=45 Identities=13% Similarity=0.405 Sum_probs=22.2
Q ss_pred cCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEcCCCCceEE
Q psy10962 111 GDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIY 160 (196)
Q Consensus 111 sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~~~~~Wi~ 160 (196)
.+|.+|+--+-+. --.|-.+|||++.++.|.-+|.|..+-|+.+.
T Consensus 8 d~G~~t~~ePhd~-----~~~p~p~qV~va~~v~~~~~iafKs~~GkYLs 52 (191)
T PF06229_consen 8 DNGLFTTGEPHDV-----GEGPDPRQVWVATRVPGDEKIAFKSGHGKYLS 52 (191)
T ss_dssp TTS-EEE----SS-----S----TTT-EEEEE--SSS-EEEEETTS-BEE
T ss_pred ccCCccccCCCcC-----CCCCChhHeEEEEEecCCCceEeeccCccEEE
Confidence 3455555544221 11344799999999988888999887777654
No 46
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=20.96 E-value=1.8e+02 Score=23.40 Aligned_cols=60 Identities=10% Similarity=0.095 Sum_probs=37.5
Q ss_pred cEEEEcCCCccceeeeccCCCCCcceeEcCCCCceEEcCCCc-cHHHHHHHHHHhhcCCcEEEe
Q psy10962 124 GTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNK-SLHDLLQEEIVTIVTSNVDFY 186 (196)
Q Consensus 124 gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~~~~~Wi~tRdg~-eL~~lLs~Els~~~G~~v~f~ 186 (196)
+.|+.++-.|..+|.+.-| .|++.+.-....--++..-+|. .+..+|..... .+.+|.++
T Consensus 70 s~~l~~~~~~Gd~v~i~gP-~g~f~~~~~~~~~v~ia~GtGiap~~~il~~~~~--~~~~v~l~ 130 (211)
T cd06185 70 SRYMHELLRVGDELEVSAP-RNLFPLDEAARRHLLIAGGIGITPILSMARALAA--RGADFELH 130 (211)
T ss_pred HHHHHhcCCCCCEEEEcCC-ccCCcCCCCCCcEEEEeccchHhHHHHHHHHHHh--CCCCEEEE
Confidence 4577777788999999999 6776654332222367766775 46666665543 23456553
No 47
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=20.69 E-value=3e+02 Score=20.88 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=20.6
Q ss_pred CCCccHHHHHHHHHHhhcCCcEEE
Q psy10962 162 HDNKSLHDLLQEEIVTIVTSNVDF 185 (196)
Q Consensus 162 Rdg~eL~~lLs~Els~~~G~~v~f 185 (196)
+.|+++.+.+.+|+.+-+|.++.-
T Consensus 35 e~gEt~~~aA~REl~EEtGl~~~~ 58 (131)
T cd03429 35 EPGESLEEAVRREVKEEVGIRVKN 58 (131)
T ss_pred cCCCCHHHHHhhhhhhccCceeee
Confidence 368899999999999999987554
No 48
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=20.51 E-value=75 Score=23.12 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.6
Q ss_pred ceeecCcEEEEEEc
Q psy10962 107 DVTYGDGVLTVNFG 120 (196)
Q Consensus 107 Dvd~sgGVLTI~f~ 120 (196)
...+.+|||+|+++
T Consensus 76 ~A~~~~GvL~I~l~ 89 (90)
T cd06470 76 GAELENGLLTIDLE 89 (90)
T ss_pred eeEEeCCEEEEEEE
Confidence 45779999999985
No 49
>PRK11037 hypothetical protein; Provisional
Probab=20.10 E-value=2.7e+02 Score=21.13 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEE
Q psy10962 70 TGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTV 117 (196)
Q Consensus 70 ~s~Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI 117 (196)
...+++.+-...|++.+..=+++|+.+.- -+|+-.+|||-.
T Consensus 5 ~~~I~~~~LL~~AN~iI~~Hedyi~GM~a-------~~Veqk~~VLVF 45 (83)
T PRK11037 5 TQPIDRETLLLEANKIIREHEDYLAGMRA-------TDVEQKNGVLVF 45 (83)
T ss_pred CcccCHHHHHHHHHHHHHhhHHHhccccc-------ceeeeeCCEEEE
Confidence 45678999999999999999999997643 278889999754
Done!