RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10962
         (196 letters)



>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 119

 Score =  131 bits (330), Expect = 3e-40
 Identities = 58/118 (49%), Positives = 81/118 (68%), Gaps = 3/118 (2%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
            YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+QTPNKQ
Sbjct: 5   TYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQ 64

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGK 194
           IWLSSP+SGPKRYD+      W+Y HD  SLH+LL  E+   + + +D  S+ ++SGK
Sbjct: 65  IWLSSPSSGPKRYDWT--GKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLAYSGK 119


>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 112

 Score =  117 bits (294), Expect = 6e-35
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 72  SISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQ 131
           ++ L +     ++ L+ L D  + + E +      DV    GV+T+      GTYVIN+Q
Sbjct: 7   NLPLEKAHEEADDYLDHLLDSLEELSEAHPDCI-PDVELSHGVMTLEIPA-FGTYVINKQ 64

Query: 132 TPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIV 179
            PNKQIWL+SP SGP R+D       W+   +   L D+L EE+   +
Sbjct: 65  PPNKQIWLASPLSGPNRFDLL--NGEWVSLRNGTKLTDILTEEVEKAI 110


>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
          Length = 106

 Score =  111 bits (279), Expect = 9e-33
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           E+  + ++   ++ +  D    +     + D     GVLT+ F N     +INRQ P  Q
Sbjct: 5   EFHRLADQLWLTIEERLDDWDGD----SDIDCEINGGVLTITFEN-GSKIIINRQEPLHQ 59

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185
           +WL++   G   +D       WI     ++  DLL++         V F
Sbjct: 60  VWLATK-QGGYHFDLKGDE--WICDRSGETFWDLLEQAATQQAGETVSF 105


>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId:
           562]}
          Length = 57

 Score = 27.1 bits (60), Expect = 0.33
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 84  ETLESLTDYFDVIVEENTHLENAD 107
           ETLE + +  +V+V E    E+A 
Sbjct: 23  ETLEEMLEKLEVVVNERREEESAA 46


>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum
           [TaxId: 6182]}
          Length = 140

 Score = 26.1 bits (57), Expect = 2.1
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 17/99 (17%)

Query: 61  HCRNLCSSLTGSISLPEYEVICNETLESLT---DYFDVIVEENTHLENADVTYGDGVLTV 117
              ++   ++      ++E +  + L  L      F+  +   T+L    VT+ D +L  
Sbjct: 17  AVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYD 76

Query: 118 NFGN------------PHGTYVINR--QTPNKQIWLSSP 142
                           P       R    P    +L S 
Sbjct: 77  ALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSS 115


>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
           {Methylobacterium extorquens [TaxId: 408]}
          Length = 596

 Score = 25.3 bits (54), Expect = 5.5
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 112 DGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDP----SRNIWIYKHDNKS 166
           DG + ++   P+ T+ +    P   +W   P   P           +R +  +  D K+
Sbjct: 62  DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKT 120


>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
           (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
          Length = 267

 Score = 25.2 bits (54), Expect = 5.8
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 5/74 (6%)

Query: 36  GIIGHGSHRK-TLVQSQDNVLNFTG-IHCRNLCSSLTGSISLPEYEVICNETLESLTDYF 93
            ++GH    K TL    + +L  TG    R      T +        +   T+ +     
Sbjct: 6   ALVGHAGSGKTTLT---EALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 62

Query: 94  DVIVEENTHLENAD 107
                    L+   
Sbjct: 63  LFRGHRVFLLDAPG 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 754,285
Number of extensions: 34732
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 10
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)