BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10964
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 45 HMSVLLP--ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
H+S +P IT VY +FV G++GN V VII T + TATN Y
Sbjct: 16 HISPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIY 60
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 50 LPITIV--YFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
L +TIV Y + V G++GN V VI+ +T + TATN Y
Sbjct: 124 LKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIY 163
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 46 MSVLLPITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
+++ + IT +Y + G++GN+ V I+ T L TATN Y
Sbjct: 11 LALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIY 52
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril
In Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 55 VYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
V I V ++GN+ VC + N++L TNY+
Sbjct: 37 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYF 69
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 55 VYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
V I V ++GN+ VC + N++L TNY+
Sbjct: 27 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYF 59
>pdb|3NGB|H Chain H, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|B Chain B, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|E Chain E, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|J Chain J, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
Length = 224
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 3 ELESFLADDMIVYNCSMNDSMITSYNWTVEHY 34
EL S DD VY C+ + YNW EH+
Sbjct: 82 ELRSLTVDDTAVYFCTRGKNC--DYNWDFEHW 111
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 55 VYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
V I V ++GN+ VC + N++L TNY+
Sbjct: 12 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYF 44
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 55 VYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
V I V ++GN+ VC + N++L TNY+
Sbjct: 12 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYF 44
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With
An Allosteric Inverse-Agonist Antibody At 2.7 A
Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With
An Allosteric Inverse-Agonist Antibody At 3.1 A
Resolution
Length = 326
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 55 VYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
V I V ++GN+ VC + N++L TNY+
Sbjct: 12 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYF 44
>pdb|3U7W|H Chain H, Crystal Structure Of Nih45-46 Fab
pdb|3U7Y|H Chain H, Structure Of Nih45-46 Fab In Complex With Gp120 Of 93th057
Hiv
Length = 229
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 3 ELESFLADDMIVYNCSMND--SMITSYNWTVEHY 34
EL S +DD VY C+ + YNW EH+
Sbjct: 82 ELRSLTSDDTAVYFCTRGKYCTARDYYNWDFEHW 115
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 41 PKRLHMSVLLPITI--VYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
P+ S++ ITI +Y + V G+ GN V VI+ T + TATN Y
Sbjct: 7 PQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIY 55
>pdb|2YKK|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
pdb|3ZQ9|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
Length = 524
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 21 DSMITSYNWTVEHYLYCMRGPKRLHMSVLLPITIVYF-------GIFVTGVIGN 67
DS+ +Y+W V++YL MR ++ LL + V++ GI +T +GN
Sbjct: 249 DSVKGNYSWFVDYYLDQMRLSSQVEGKRLLDVFDVHWYPEAMGGGIRITNEVGN 302
>pdb|2YIH|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Gh Family 44 With Xyloglucan
pdb|2YJQ|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
pdb|2YJQ|B Chain B, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
Length = 524
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 21 DSMITSYNWTVEHYLYCMRGPKRLHMSVLLPITIVYF-------GIFVTGVIGN 67
DS+ +Y+W V++YL MR ++ LL + V++ GI +T +GN
Sbjct: 249 DSVKGNYSWFVDYYLDQMRLSSQVEGKRLLDVFDVHWYPEAMGGGIRITNEVGN 302
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 CMRGPKRLHMSVLLPITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
C R + LP +Y IF+TG++GN V +V+ L + T+ Y
Sbjct: 38 CFREENANFNKIFLPT--IYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKY 86
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 CMRGPKRLHMSVLLPITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
C R + LP +Y IF+TG++GN V +V+ L + T+ Y
Sbjct: 38 CFREENANFNKIFLPT--IYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKY 86
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 CMRGPKRLHMSVLLPITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYY 87
C R + LP +Y IF+TG++GN V +V+ L + T+ Y
Sbjct: 38 CFREENANFNKIFLPT--IYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKY 86
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 56 YFGIFVTGVIGNIAVCVVIINNTSLHTATNY 86
Y + + V GN VC+ ++ +L T TNY
Sbjct: 45 YCALILAIVFGNGLVCMAVLKERALQTTTNY 75
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 55 VYFGIFVTG------VIGNIAVCVVIINNTSLHTATNYY 87
V F F+TG +IGNI V V N L T NY+
Sbjct: 12 VVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYF 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,523,498
Number of Sequences: 62578
Number of extensions: 79715
Number of successful extensions: 188
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 21
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)