RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10964
(103 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 34.6 bits (80), Expect = 0.004
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 72 VVIINNTSLHTATNYYLFSLAVSDLTLLLL 101
+VI+ L T TN +L +LAV+DL LL
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLT 30
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 33.1 bits (75), Expect = 0.013
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 52 ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLL 100
I I Y IF+ G+ GN A+ ++I+ + T T+ Y+F+LA+SDL ++
Sbjct: 101 IKIFYIIIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISDLIFVI 148
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 31.7 bits (72), Expect = 0.036
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 15 YNCSMNDSMITSYNWTVEHYLYCMRGPKRL---HMSVLLPITIVYFGIFVTGVIGNIAVC 71
Y ++N ++ + ++ + Y L + + + +VY IF G++GNI V
Sbjct: 3 YTLTINTTIENTTDYYYDTYYDEDYADCDLNIGYDTNSTILIVVYSTIFFFGLVGNIIV- 61
Query: 72 VVIINNTSLHTATNYYLFSLAVSDLTLLLL 101
+ ++ T + T + YL +LAVSDL ++
Sbjct: 62 IYVLTKTKIKTPMDIYLLNLAVSDLLFVMT 91
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 29.1 bits (65), Expect = 0.38
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 52 ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLL 100
+ + Y +F+ G+IGN+ V V+I + + YLF++A+SDL L+
Sbjct: 31 VIVFYILLFIFGLIGNVLVIAVLIVKRFMFV-VDVYLFNIAMSDLMLVF 78
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 27.8 bits (62), Expect = 1.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 1 MEELESFL-ADDMIV-YNCSMNDSMITSY-NWTVEHYLYCMRGPKRLHMSVLL 50
+ +E++L A+ M V YN + + +SY +E C+ GPKR H V L
Sbjct: 372 VAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPL 424
>gnl|CDD|225134 COG2224, AceA, Isocitrate lyase [Energy production and conversion].
Length = 433
Score = 25.8 bits (57), Expect = 5.1
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 6/21 (28%)
Query: 10 DDMIVYNCSMNDSMITSYNWT 30
++ YNCS S+NW
Sbjct: 312 GKLLAYNCS------PSFNWK 326
>gnl|CDD|148604 pfam07092, DUF1356, Protein of unknown function (DUF1356). This
family consists of several hypothetical mammalian
proteins of around 250 residues in length. The function
of this family is unknown.
Length = 231
Score = 25.5 bits (56), Expect = 5.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 52 ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLT 97
+ + GI V + +V +N TS TN + +AV+ LT
Sbjct: 94 VLVDDVGIKSVKVTFDEQNSLVYLNITSTLNITNNNFYPVAVTSLT 139
>gnl|CDD|131740 TIGR02693, arsenite_ox_L, arsenite oxidase, large subunit. This
model represents the large subunit of an arsenite
oxidase complex. The small subunit is a Rieske protein.
Homologs to both large and small subunits that score in
the gray zone between the set trusted and noise bit
score cutoffs for the respective models are found in
Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
This enzyme acts in energy metabolim by arsenite
oxidation, rather than detoxification by reduction of
arsenate to arsenite prior to export [Energy metabolism,
Electron transport].
Length = 806
Score = 25.7 bits (56), Expect = 5.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 68 IAVCVVIINNTSLHTATNYYL 88
+A +V+ S T TNY+L
Sbjct: 220 LADTIVLWGANSYETQTNYFL 240
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 24.9 bits (55), Expect = 9.1
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 60 FVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLL 100
V G+ GN+ + ++ L + +Y + ++DL L
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLS 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.140 0.427
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,227,224
Number of extensions: 440514
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 31
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)