RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10964
(103 letters)
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 66.0 bits (161), Expect = 3e-14
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 16 NCSMNDSMITSYNWTVEHYLYCMRGPKRLHMSVLLPITIVYFGIFVTGVIGNIAVCVVII 75
+ T Y+ G L + + + I +Y + V G++GN V VI+
Sbjct: 93 KVKEAQAAAEQLKTTRNAYIQKYLGAF-LPLGLKVTIVGLYLAVCVGGLLGNCLVMYVIL 151
Query: 76 NNTSLHTATNYYLFSLAVSDLTLLL 100
+T + TATN Y+F+LA++D +LL
Sbjct: 152 RHTKMKTATNIYIFNLALADTLVLL 176
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 63.5 bits (155), Expect = 2e-13
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 19 MNDSMITSYNWTVEHYLYC-MRGPKRLHMSVLLPITIVYFGIFVTGVIGNIAVCVVIINN 77
M++ + + + ++ Y I VT V+GN+ V +I+ +
Sbjct: 1 MDNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAH 60
Query: 78 TSLHTATNYYLFSLAVSDLTLLLLG 102
+ T TNY+L +LA ++ ++
Sbjct: 61 KRMRTVTNYFLVNLAFAEASMAAFN 85
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 60.7 bits (147), Expect = 2e-12
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 15 YNCSMNDSMITSYNWTVEHYLY--------CMRGPKRLHMSVLLPITIVYFGIFVTGVIG 66
S+ TS N+T E C R + LP +Y IF+TG++G
Sbjct: 8 AGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPT--IYSIIFLTGIVG 65
Query: 67 NIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLL 100
N V +V+ L + T+ Y L+V+DL ++
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI 99
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 57.8 bits (139), Expect = 2e-11
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 52 ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLLL 101
V I V ++GN+ VC + N++L TNY++ SLA +D+ + +L
Sbjct: 24 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVL 73
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 57.4 bits (138), Expect = 2e-11
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 20 NDSMITSYNWTVEHYLYC------MRGPKRLHMSVLLPITIVYFGIFVTGVIGNIAVCVV 73
+D+M N + ++ ++ + IV I + V GN+ V
Sbjct: 5 DDAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITA 64
Query: 74 IINNTSLHTATNYYLFSLAVSDLTLLLL 101
I L T TNY++ SLA +DL + L
Sbjct: 65 IAKFERLQTVTNYFITSLACADLVMGLA 92
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 56.9 bits (137), Expect = 4e-11
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 37 CMRGPKRLHMSVLLPITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDL 96
G + ++ + +Y + V G+ GN V VI+ T + TATN Y+F+LA++D
Sbjct: 7 PQTGSPSMVTAITIMA--LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADA 64
Query: 97 TLLL 100
Sbjct: 65 LATS 68
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 56.3 bits (135), Expect = 7e-11
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 19 MNDSMITSYNWTVEHYLYCMRGPKRLHMSVLLPITIVYFGIFVTGVIGNIAVCVVIINNT 78
M+DS +S N ++ I +V + + +IGNI V V I N
Sbjct: 1 MDDSTDSSDNSLAL--------TSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNR 52
Query: 79 SLHTATNYYLFSLAVSDLTLLLL 101
L T NY+LFSLA +DL + +
Sbjct: 53 HLQTVNNYFLFSLACADLIIGVF 75
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 55.5 bits (133), Expect = 1e-10
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 52 ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLLL 101
+ Y + + V GN VC+ ++ +L T TNY + SLAV+DL + L
Sbjct: 41 YALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATL 90
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR,
hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 55.5 bits (133), Expect = 1e-10
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 49 LLPITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDL 96
L+P+ +V I + V N+ V + + LHT N Y+ SL+V+DL
Sbjct: 8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADL 55
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 55.1 bits (132), Expect = 2e-10
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 52 ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLLL 101
V I V ++GN+ VC + N++L TNY++ SLA +D+ + +L
Sbjct: 34 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVL 83
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 54.5 bits (130), Expect = 2e-10
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 25 TSYNWTVEHYLYCMRGPKRLH-MSVLLPITIVYFGIFVTGVIGNIAVCVVIINNTSLHTA 83
+Y+ V HY Y + + + ++V+ I ++ NI V + I H
Sbjct: 38 VNYDIIVRHYNYTGKLNISADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRP 97
Query: 84 TNYYLFSLAVSDL 96
Y++ +LA+SDL
Sbjct: 98 MYYFIGNLALSDL 110
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 54.2 bits (130), Expect = 4e-10
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 45 HMSVLLPITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLLL 101
++ + IV I + V GN+ V I L T TNY++ SLA +DL + L
Sbjct: 178 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLA 234
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 53.8 bits (129), Expect = 5e-10
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 52 ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLLLG 102
+ I + G GN V + SL T N ++ +LA SD T L+
Sbjct: 37 LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVN 87
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 52.4 bits (126), Expect = 1e-09
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 52 ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLLLG 102
+ F + + G N V + + L T NY L +LAV+DL ++ G
Sbjct: 41 LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG 91
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 51.3 bits (123), Expect = 4e-09
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 40 GPKRLHMSVLLPITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLL 99
G + L ++++ + + V GN+ V I + L T TN ++ SLA +DL +
Sbjct: 2 GAELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVG 61
Query: 100 LL 101
LL
Sbjct: 62 LL 63
>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
{Burkholderia SP} PDB: 1y37_A
Length = 304
Score = 24.9 bits (55), Expect = 5.5
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 30 TVEHYLYCMRGPKRLH 45
+E Y R P +H
Sbjct: 191 QLEEYRKQWRDPAAIH 206
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Length = 306
Score = 24.9 bits (55), Expect = 5.8
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 30 TVEHYLYCMRGPKRLH 45
VEHY P R H
Sbjct: 200 AVEHYRIAFADPMRRH 215
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 24.8 bits (55), Expect = 6.3
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 60 FVTGVIGNIAVCVVIINNTSL 80
T V ++ V V+ N
Sbjct: 457 LATQVQYHLPVINVVFTNCQY 477
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics,
protein structure initiative, NEW YORK structural
research consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 24.6 bits (53), Expect = 7.6
Identities = 3/28 (10%), Positives = 6/28 (21%), Gaps = 1/28 (3%)
Query: 19 MNDSMITSYNWTVEHYLYCMRGPKRLHM 46
M+ + R +R
Sbjct: 1 MSLRHLYIEEGRTVCASATSRN-RRPTS 27
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 24.5 bits (54), Expect = 7.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 60 FVTGVIGNIAVCVVIINNTSL 80
VT V N+ V V+ +NT
Sbjct: 450 VVTNVRYNMPVINVVFSNTEY 470
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 24.4 bits (54), Expect = 9.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 62 TGVIGNIAVCVVIINN 77
T N+ V +VI NN
Sbjct: 459 TICRYNLPVTIVIFNN 474
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 24.5 bits (54), Expect = 9.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 62 TGVIGNIAVCVVIINNTSL 80
G NI V++NN L
Sbjct: 481 VGAQFNIPYIHVLVNNAYL 499
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.427
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,584,447
Number of extensions: 80687
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 28
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.3 bits)