RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10964
         (103 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 49.2 bits (116), Expect = 7e-09
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 52  ITIVYFGIFVTGVIGNIAVCVVIINNTSLHTATNYYLFSLAVSDLTLLLLG 102
           +    F + + G   N     V + +  L T  NY L +LAV+DL ++  G
Sbjct: 40  LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG 90


>d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans
           [TaxId: 162425]}
          Length = 519

 Score = 28.0 bits (62), Expect = 0.21
 Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 6/30 (20%)

Query: 1   MEELESFLADDMIVYNCSMNDSMITSYNWT 30
            + + +   +  + YN S       S+NW 
Sbjct: 407 ADGVHAVWPEQKLAYNLS------PSFNWK 430


>d2je8a3 b.1.4.1 (A:679-783) Beta-mannosidase, domains 2, 4 and 5
          {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 105

 Score = 23.2 bits (50), Expect = 6.5
 Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 13/92 (14%)

Query: 10 DDMIVYNCSMNDSMITSYNWTVEHYLYCMRGPKRLHMSVLLPITI------VYFGIFVTG 63
          D + VY   ++D + T    T+E  +    G        +  + +        +   + G
Sbjct: 10 DSLSVY--LISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEVPANTSKCVYRAKLDG 67

Query: 64 VIGNIAVCVVIINNTSLHT-----ATNYYLFS 90
           +         +            A + + F 
Sbjct: 68 WLTPEDCRRSFLKLILKDKSGHQVAESVHFFR 99


>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage
           K1F [TaxId: 344021]}
          Length = 516

 Score = 23.1 bits (49), Expect = 9.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 61  VTGVIGNIAVCVVIINNTSLHTATN 85
           VTGV G++ V  VI  +       N
Sbjct: 220 VTGVSGDMTVATVIDKDNFTVLTPN 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,520
Number of extensions: 15624
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)