Query psy10965
Match_columns 400
No_of_seqs 161 out of 984
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:59:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959|consensus 100.0 1E-104 2E-109 806.6 38.3 398 1-399 90-493 (996)
2 PLN02701 alpha-mannosidase 100.0 1.6E-90 3.5E-95 752.1 41.4 392 1-399 85-540 (1050)
3 KOG1958|consensus 100.0 9.4E-82 2E-86 641.1 31.4 360 1-365 208-606 (1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 1.6E-71 3.5E-76 604.5 34.2 337 4-399 53-395 (875)
5 KOG4342|consensus 100.0 3E-57 6.5E-62 446.9 27.4 316 4-362 327-653 (1078)
6 PF01074 Glyco_hydro_38: Glyco 100.0 7.7E-52 1.7E-56 396.1 17.8 232 1-264 44-275 (275)
7 COG0383 AMS1 Alpha-mannosidase 100.0 2E-35 4.4E-40 319.1 9.3 294 4-363 244-549 (943)
8 PF09261 Alpha-mann_mid: Alpha 99.9 4.3E-25 9.4E-30 171.4 5.7 75 269-343 1-80 (80)
9 smart00872 Alpha-mann_mid Alph 99.9 1.2E-23 2.6E-28 162.9 6.6 74 270-343 1-79 (79)
10 COG0383 AMS1 Alpha-mannosidase 99.8 1.1E-21 2.4E-26 212.7 -0.5 300 16-347 64-391 (943)
11 PF03065 Glyco_hydro_57: Glyco 98.3 2.5E-06 5.4E-11 84.9 10.2 90 15-107 107-197 (360)
12 COG1543 Uncharacterized conser 97.1 0.0019 4.1E-08 64.6 8.2 92 10-104 115-207 (504)
13 PF01522 Polysacc_deac_1: Poly 95.8 0.022 4.7E-07 47.0 5.8 75 21-100 47-122 (123)
14 TIGR03212 uraD_N-term-dom puta 95.6 0.95 2.1E-05 43.9 17.0 87 12-107 100-187 (297)
15 COG1449 Alpha-amylase/alpha-ma 94.3 4.1 8.9E-05 43.5 18.9 88 10-100 171-262 (615)
16 TIGR02884 spore_pdaA delta-lac 92.8 0.63 1.4E-05 43.1 8.7 76 22-101 80-156 (224)
17 TIGR02764 spore_ybaN_pdaB poly 92.8 0.8 1.7E-05 41.0 9.2 74 22-100 49-123 (191)
18 TIGR03006 pepcterm_polyde poly 91.3 0.89 1.9E-05 43.3 8.0 86 12-104 51-139 (265)
19 TIGR02873 spore_ylxY probable 89.0 2.6 5.6E-05 40.2 9.1 74 22-100 128-202 (268)
20 PRK15394 4-deoxy-4-formamido-L 83.0 47 0.001 32.1 17.4 79 23-106 93-175 (296)
21 PRK14582 pgaB outer membrane N 82.0 62 0.0013 35.1 16.1 81 22-106 168-276 (671)
22 PRK14581 hmsF outer membrane N 77.8 9.8 0.00021 41.0 8.5 83 21-107 167-277 (672)
23 PF08672 APC2: Anaphase promot 76.6 3.5 7.5E-05 29.9 3.3 23 18-40 36-58 (60)
24 cd06811 PLPDE_III_yhfX_like Ty 46.3 1E+02 0.0022 30.9 8.5 88 11-111 4-91 (382)
25 PF01479 S4: S4 domain; Inter 46.1 25 0.00054 23.5 2.9 35 10-45 4-40 (48)
26 TIGR02988 YaaA_near_RecF S4 do 42.5 31 0.00067 24.4 3.0 43 7-50 9-53 (59)
27 PRK10148 hypothetical protein; 40.1 8.6 0.00019 33.0 -0.3 15 75-89 124-138 (147)
28 PF07023 DUF1315: Protein of u 39.5 28 0.0006 27.5 2.5 23 11-33 3-25 (93)
29 PF10549 ORF11CD3: ORF11CD3 do 39.2 30 0.00064 24.8 2.4 26 9-35 29-54 (57)
30 PF12395 DUF3658: Protein of u 36.4 29 0.00063 28.3 2.3 23 20-42 84-106 (111)
31 COG0820 Predicted Fe-S-cluster 36.0 2.2E+02 0.0047 28.3 8.7 100 118-239 75-197 (349)
32 PF10074 DUF2285: Uncharacteri 35.3 7.3 0.00016 31.6 -1.4 28 11-41 75-102 (106)
33 TIGR03092 SASP_sspI small, aci 34.8 54 0.0012 24.0 3.2 25 7-31 39-63 (65)
34 PF11921 DUF3439: Domain of un 32.3 37 0.0008 27.4 2.2 32 5-50 4-35 (122)
35 PRK12465 xylose isomerase; Pro 31.7 2.2E+02 0.0047 29.0 7.9 66 172-242 86-154 (445)
36 PF14098 SSPI: Small, acid-sol 30.4 75 0.0016 23.4 3.3 25 7-31 40-64 (65)
37 PRK12270 kgd alpha-ketoglutara 29.1 1.7E+02 0.0036 33.3 7.1 67 176-248 992-1060(1228)
38 cd01833 XynB_like SGNH_hydrola 28.4 1.8E+02 0.0039 24.3 6.2 46 191-237 39-86 (157)
39 PF00538 Linker_histone: linke 28.3 1.6E+02 0.0035 22.0 5.1 29 9-37 27-65 (77)
40 cd01841 NnaC_like NnaC (CMP-Ne 28.1 2.6E+02 0.0056 23.8 7.2 47 190-237 49-97 (174)
41 PF13289 SIR2_2: SIR2-like dom 26.0 3.6E+02 0.0078 21.9 7.8 81 3-99 61-141 (143)
42 smart00363 S4 S4 RNA-binding d 25.4 91 0.002 20.8 3.1 38 11-49 5-44 (60)
43 PRK02955 small acid-soluble sp 24.8 98 0.0021 22.9 3.1 25 7-31 42-66 (68)
44 smart00271 DnaJ DnaJ molecular 24.0 2.1E+02 0.0047 19.6 4.9 38 309-348 16-53 (60)
45 KOG4120|consensus 23.4 3.7E+02 0.0079 26.4 7.5 73 44-144 210-288 (426)
46 cd01838 Isoamyl_acetate_hydrol 23.4 2.8E+02 0.0061 23.9 6.7 47 192-239 63-116 (199)
47 TIGR03826 YvyF flagellar opero 23.2 59 0.0013 27.7 2.0 17 21-37 60-76 (137)
48 cd06588 PhnB_like Escherichia 22.8 31 0.00067 28.3 0.3 15 75-89 113-127 (128)
49 smart00419 HTH_CRP helix_turn_ 22.7 2.2E+02 0.0048 18.3 4.6 35 8-42 13-47 (48)
50 PF10835 DUF2573: Protein of u 22.6 66 0.0014 24.5 1.9 23 8-30 46-68 (82)
51 PTZ00494 tuzin-like protein; P 22.6 2E+02 0.0044 29.9 5.9 23 11-33 283-305 (664)
52 cd01836 FeeA_FeeB_like SGNH_hy 22.4 3.4E+02 0.0074 23.4 7.0 47 190-237 65-113 (191)
53 PF06254 DUF1019: Protein of u 21.7 1.2E+02 0.0026 23.8 3.3 21 7-28 12-32 (89)
54 cd01828 sialate_O-acetylestera 21.5 4E+02 0.0088 22.4 7.2 46 191-237 47-94 (169)
55 TIGR02147 Fsuc_second hypothet 21.2 1.4E+02 0.003 28.5 4.4 33 19-51 155-188 (271)
56 PF14323 GxGYxYP: GxGYxY seque 20.9 9.4E+02 0.02 24.9 12.1 99 17-129 280-383 (464)
57 cd04502 SGNH_hydrolase_like_7 20.7 3.5E+02 0.0077 22.9 6.6 46 191-237 49-96 (171)
58 PF04567 RNA_pol_Rpb2_5: RNA p 20.7 94 0.002 21.2 2.3 14 25-38 2-15 (48)
59 PF08220 HTH_DeoR: DeoR-like h 20.6 3.1E+02 0.0067 19.1 5.3 33 13-45 24-56 (57)
60 PF03755 YicC_N: YicC-like fam 20.6 3.2E+02 0.007 23.5 6.3 58 11-69 39-99 (159)
61 KOG0570|consensus 20.2 5.5E+02 0.012 23.3 7.5 63 280-345 78-144 (223)
62 PRK14461 ribosomal RNA large s 20.1 5.7E+02 0.012 25.7 8.5 21 119-143 83-103 (371)
No 1
>KOG1959|consensus
Probab=100.00 E-value=9.6e-105 Score=806.65 Aligned_cols=398 Identities=54% Similarity=0.979 Sum_probs=385.5
Q ss_pred CEEeeHHHHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeec
Q psy10965 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQI 80 (400)
Q Consensus 1 F~~~E~~~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~ 80 (400)
||++|++||.|||++++++.++.||+||++|||||+||||+|+|||.++|.++|+|++.|++|+.++||+|.+|++||++
T Consensus 90 FI~VE~aFF~rWW~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqI 169 (996)
T KOG1959|consen 90 FIYVETAFFARWWNEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQI 169 (996)
T ss_pred eehhhHHHHHHHHHhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHCCCCceeeecccHHHHHHhhhCCcceEEEecCCCCCCCcceeeeecCCCCCCCCCCCccCCCCCC
Q psy10965 81 DPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGVMYNIYDPPPGFCFDTYCEDE 160 (400)
Q Consensus 81 D~FGhs~~lPqil~~~Gi~~~~~~R~~~~~~~~~~~~~~~~F~W~g~dg~~~~s~v~t~~~~~~Y~~~~~~~~d~~~~~~ 160 (400)
||||||+.+|.||++||+++.+|.|+++.+|..|...+.+||+|+|++.++++++|||++|+++|++|++||||..|.+.
T Consensus 170 DPFGHSreqAslfAqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P~gfc~dv~c~d~ 249 (996)
T KOG1959|consen 170 DPFGHSREQASLFAQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPPPGFCFDVLCGDD 249 (996)
T ss_pred CCCCcchHHHHHHHHhCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCCCCceeccccCCC
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CccCCCCccccchhhhHHHHHHHHHHHhhhcCCCceEEeeeCCCCCcchhHHHHHHHHHHHHHHccC--CCCeEEEecCh
Q psy10965 161 PIMDNPKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKL--NSDVHVLYSTP 238 (400)
Q Consensus 161 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~~~G~D~~~~~a~~~f~~~~~li~~~n~~~--~~~~~i~~sT~ 238 (400)
|++|++.+.++|++++++.|++.++.++..|+|||||+|+|+||.|.+|..||+|||+||+++|++. +..+++.||||
T Consensus 250 Pi~D~~~~~d~NVkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTp 329 (996)
T KOG1959|consen 250 PIIDGPRSYDYNVKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTP 329 (996)
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcCh
Confidence 9999998999999999999999999999999999999999999999999999999999999999774 67899999999
Q ss_pred HHHHHHHHhcCCCCCCccCCCcccCCCCCCCccceeeecchhhHHHHHHHHHHHHHHHHHHhhCCCCc--ChHHHHHHHH
Q psy10965 239 ACYLQALNKENITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNVALQMTKQLKTSLPNDT--LAEEQFLIQR 316 (400)
Q Consensus 239 ~~yf~~l~~~~~~lpv~~~gel~~~~~~~~~yw~G~ytSr~~lK~~~r~~e~~L~~ae~l~~l~~~~~--~~~~l~~~w~ 316 (400)
++|++++++.+..||+. +.|||||++++|+||||||||||.+|++.|++.+.|++|++|++++.+.. ..+.++.+++
T Consensus 330 scYl~alh~~~~Twp~K-t~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~~~~~~dl~~Lre 408 (996)
T KOG1959|consen 330 SCYLNALHAANQTWPVK-TDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSSTEQGPDLDYLRE 408 (996)
T ss_pred HHHHHHHHHhcCccccc-ccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCccccCccHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999843 3368999999
Q ss_pred HHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCCC-CCCeE-EEEEc
Q psy10965 317 AMGIAQHHDAVSGTERQHVTNDYSLYLYEGIQAAMKIINVAYRHLLGDYLPEQQPCLLMNVSQCELPS-PTINY-ITLYN 394 (400)
Q Consensus 317 ~l~~~q~HD~ItGTs~~~V~~d~~~~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~s~~~~~~-~~~~~-~~v~N 394 (400)
++++.||||+||||++++|.+||.++|..++..++.++.++++.|....+..+..|.++|+|.||.++ .++++ ++|||
T Consensus 409 am~i~QHHDAVTGTekq~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~~~~f~~C~~lNiS~C~~t~~~~~~~~v~~YN 488 (996)
T KOG1959|consen 409 AMAIMQHHDAVTGTEKQHVADDYARRLADGILGAEKLARDALRKLTNLPNGEFQSCLLLNISECAFTKDGADNFIVTLYN 488 (996)
T ss_pred HHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhhhhccccCCCCcCCcCcEEEEEEc
Confidence 99999999999999999999999999999999999999999999998777789999999999999994 66778 99999
Q ss_pred CCCCC
Q psy10965 395 RFRLS 399 (400)
Q Consensus 395 p~~~~ 399 (400)
||+|.
T Consensus 489 pLa~~ 493 (996)
T KOG1959|consen 489 PLAHT 493 (996)
T ss_pred CCcce
Confidence 99996
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=1.6e-90 Score=752.09 Aligned_cols=392 Identities=31% Similarity=0.559 Sum_probs=346.8
Q ss_pred CEEeeHHHHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeec
Q psy10965 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQI 80 (400)
Q Consensus 1 F~~~E~~~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~ 80 (400)
|+|+|++||++||++++|+.+++||+||++||||||||||||+||+++++||+||||++|++|++++|| +.|++||+|
T Consensus 85 Fi~~E~~fl~~Ww~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG--~~P~~~W~i 162 (1050)
T PLN02701 85 FIWEEMSYLERWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIG--VAPKNSWAI 162 (1050)
T ss_pred eeeccHHHHHHHHHhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcC--CCCCcCccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCCCCHHHHHHHHHCCCCceeeecccHHHHHHhhhCCcceEEEec----CCCCCCCcceeeeecC-------CCCCCCC
Q psy10965 81 DPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRP----DDTLGPEGDFFTGVMY-------NIYDPPP 149 (400)
Q Consensus 81 D~FGhs~~lPqil~~~Gi~~~~~~R~~~~~~~~~~~~~~~~F~W~g----~dg~~~~s~v~t~~~~-------~~Y~~~~ 149 (400)
||||||+++||||++|||++++|+|+++.++..+...+.+||+|++ +|| ++||||++| .+|++++
T Consensus 163 DpFGhs~~~P~Ll~~~G~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dg----s~Ift~~lp~y~Y~~p~~~~p~p 238 (1050)
T PLN02701 163 DPFGYSSTMAYLLRRMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEET----TDIFVHMMPFYSYDIPHTCGPEP 238 (1050)
T ss_pred CCCCCCHHHHHHHHhCCCceEEEeccchHHHHHHhhcCCceEEEeCCCCCCCC----CEEEEEEccccccCcccccCCCc
Confidence 9999999999999999999999999999999999889999999996 566 999999999 2356778
Q ss_pred CCC--ccCCCCC------CCccCC-CCccccchhhhHHHHHHHHHHHhhhcCCCceEEeeeCCCCCc---chhHHHHHHH
Q psy10965 150 GFC--FDTYCED------EPIMDN-PKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYV---VASAWFKNID 217 (400)
Q Consensus 150 ~~~--~d~~~~~------~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~~~G~D~~~~---~a~~~f~~~~ 217 (400)
+|| ||+.+.+ .|..++ ..++++|++++++.|++++++.+..|+++++|+|+|+||.++ .+..+|++++
T Consensus 239 ~~c~~Fd~~~~~~~~~~~cp~~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~d 318 (1050)
T PLN02701 239 AICCQFDFARMRGFQYELCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQ 318 (1050)
T ss_pred ccccccccccccccccccCcccCCccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHH
Confidence 899 5654320 122122 246778899999999999999998999999999999999995 5778899999
Q ss_pred HHHHHHHccCCCCeEEEecChHHHHHHHHhcC----------------CCCCCccCCCcccCCCCCCCccceeeecchhh
Q psy10965 218 KLIKYVNAKLNSDVHVLYSTPACYLQALNKEN----------------ITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSF 281 (400)
Q Consensus 218 ~li~~~n~~~~~~~~i~~sT~~~yf~~l~~~~----------------~~lpv~~~gel~~~~~~~~~yw~G~ytSr~~l 281 (400)
++++++|+++...++++|||+++||+++++.. ..||++ .||||||+++.++||||||||||.+
T Consensus 319 kli~~iN~~~~~~~~i~~ST~~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~-~gDff~Ya~~~~~yWTGyyTSRp~l 397 (1050)
T PLN02701 319 KLFDYINSNPSLKAEVKFGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSL-SGDFFTYADRQQDYWSGYYVSRPFF 397 (1050)
T ss_pred HHHHHHhhCcccCceEEECCHHHHHHHHHhhhccccccccccccccccCCCcee-cccccccccccccccceeeecHHHH
Confidence 99999999853458999999999999998753 579999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC-------CcCh----HHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHH
Q psy10965 282 KYFVYQTNVALQMTKQLKTSLPN-------DTLA----EEQFLIQRAMGIAQHHDAVSGTERQHVTNDYSLYLYEGIQAA 350 (400)
Q Consensus 282 K~~~r~~e~~L~~ae~l~~l~~~-------~~~~----~~l~~~w~~l~~~q~HD~ItGTs~~~V~~d~~~~l~~a~~~~ 350 (400)
|+++|.+|++|+.||+|++++.. ..|| +.|+.+||.|+++||||+|||||+++|++||..||.+++..+
T Consensus 398 K~~~R~~e~~L~~aE~L~sla~~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhHDaItGTsk~~V~~Dy~~rl~~~~~~~ 477 (1050)
T PLN02701 398 KAVDRVLEQTLRAAEILFSFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDL 477 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCChhhHHHHHHHHHHHHhhccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999532 2354 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC-------CCCCCcccc-cccccccCCCC-----CCCeE-EEEEcCCCCC
Q psy10965 351 MKIINVAYRHLLGD-------YLPEQQPCL-LMNVSQCELPS-----PTINY-ITLYNRFRLS 399 (400)
Q Consensus 351 ~~~~~~~~~~l~~~-------~~~~~~~~~-~~n~s~~~~~~-----~~~~~-~~v~Np~~~~ 399 (400)
+.+++.+++.|+.. .+..+..|. .+|++.||.+. ..+.+ |||||||+|+
T Consensus 478 ~~~~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvfNpL~~~ 540 (1050)
T PLN02701 478 QIFMSAAVEVLLGIRHEKSDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQT 540 (1050)
T ss_pred HHHHHHHHHHHhhccccccccccccccccccccccccccccccccccCCCceEEEEECCCCce
Confidence 99999999999863 122355663 56788887552 23445 9999999996
No 3
>KOG1958|consensus
Probab=100.00 E-value=9.4e-82 Score=641.09 Aligned_cols=360 Identities=32% Similarity=0.609 Sum_probs=328.4
Q ss_pred CEEeeHHHHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeec
Q psy10965 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQI 80 (400)
Q Consensus 1 F~~~E~~~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~ 80 (400)
|||+|++||.+||..++|+.++++|+||++||||||+||||||||+-+|+-++|.|+..||+|++.+.| +.|+++|.+
T Consensus 208 FIwaEiS~~~~ww~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~ig--v~P~s~Wai 285 (1129)
T KOG1958|consen 208 FIWAEISFLERWWDDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIG--VTPQSGWAI 285 (1129)
T ss_pred hhhhhHHHHHHhhhhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCC--CCCCccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCCCHHHHHHHHHCCCCceeeecccHHHHHHhhhCCcceEEEecCCCCCCCcceeeeecCC-CC------CCCCCCC-
Q psy10965 81 DPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGVMYN-IY------DPPPGFC- 152 (400)
Q Consensus 81 D~FGhs~~lPqil~~~Gi~~~~~~R~~~~~~~~~~~~~~~~F~W~g~dg~~~~s~v~t~~~~~-~Y------~~~~~~~- 152 (400)
||||||++||+||+++|+++.+++|+|+..|..+...+.+||+|+...+..+.++||||+||. +| ++.+.+|
T Consensus 286 DPFG~S~TmpYLL~~ag~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICC 365 (1129)
T KOG1958|consen 286 DPFGYSSTMPYLLRRAGFENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICC 365 (1129)
T ss_pred CCCCCCcchHHHHhhcCchhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceee
Confidence 999999999999999999999999999999999999999999999999888789999999984 45 5556677
Q ss_pred -ccCC--------CCCCCccCCCCccccchhhhHHHHHHHHHHHhhhcCCCceEEeeeCCCCCcchhHH---HHHHHHHH
Q psy10965 153 -FDTY--------CEDEPIMDNPKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAW---FKNIDKLI 220 (400)
Q Consensus 153 -~d~~--------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~~~G~D~~~~~a~~~---f~~~~~li 220 (400)
||+. |... +....+++.|++.|++.+++++++.++-|++|.+|+|.|+||+|....+| |.|..+|+
T Consensus 366 qFDFkRmpg~~~~Cpw~--vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LF 443 (1129)
T KOG1958|consen 366 QFDFKRMPGGGCECPWG--VPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLF 443 (1129)
T ss_pred eeecccCCCCCcCCCCC--CCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHH
Confidence 4431 2211 11124788999999999999999999999999999999999999988877 99999999
Q ss_pred HHHHccCCCCeEEEecChHHHHHHHHhc------C-CCCCCccCCCcccCCCCCCCccceeeecchhhHHHHHHHHHHHH
Q psy10965 221 KYVNAKLNSDVHVLYSTPACYLQALNKE------N-ITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNVALQ 293 (400)
Q Consensus 221 ~~~n~~~~~~~~i~~sT~~~yf~~l~~~------~-~~lpv~~~gel~~~~~~~~~yw~G~ytSr~~lK~~~r~~e~~L~ 293 (400)
+++|+++...++++|+|++|||++|++. + ..+|+. +||||+|+++..+||+|||||||..|++-|.+|+.||
T Consensus 444 D~iNs~~~~nv~aqFGTlsDYF~al~k~~~e~~kg~~~FPtl-SGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR 522 (1129)
T KOG1958|consen 444 DHINSRPLLNVQAQFGTLSDYFDALDKAYSERGKGQEPFPTL-SGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLR 522 (1129)
T ss_pred HHHhcccccceeeecCCHHHHHHHHHHhhccccCCCCCCccc-ccCceeeecccCccceeeeecchHHHHHHHHHHHHHh
Confidence 9999988778999999999999999875 1 236999 9999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC--------CcCh----HHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10965 294 MTKQLKTSLPN--------DTLA----EEQFLIQRAMGIAQHHDAVSGTERQHVTNDYSLYLYEGIQAAMKIINVAYRHL 361 (400)
Q Consensus 294 ~ae~l~~l~~~--------~~~~----~~l~~~w~~l~~~q~HD~ItGTs~~~V~~d~~~~l~~a~~~~~~~~~~~~~~l 361 (400)
.||.+.++|.. ..++ +.|..|+|+|++.||||+||||+++.|+.||..|+..+++.++.++.+++..|
T Consensus 523 ~AEIl~s~a~~~~~r~~~~~r~~~~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~rl~~Sl~~~~~v~~~~~~~L 602 (1129)
T KOG1958|consen 523 SAEILFSLALAHAHRVGLAQRIEESNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQRLHESLVNLQIVLENALELL 602 (1129)
T ss_pred hHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHhhhhhhcccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986632 2333 46899999999999999999999999999999999999999999999999999
Q ss_pred hCCC
Q psy10965 362 LGDY 365 (400)
Q Consensus 362 ~~~~ 365 (400)
.++.
T Consensus 603 l~~~ 606 (1129)
T KOG1958|consen 603 LGKD 606 (1129)
T ss_pred hcCC
Confidence 8763
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=1.6e-71 Score=604.48 Aligned_cols=337 Identities=17% Similarity=0.229 Sum_probs=290.0
Q ss_pred eeHHHHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCC
Q psy10965 4 VETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPF 83 (400)
Q Consensus 4 ~E~~~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~F 83 (400)
+++++|+.|| +.+|+.+++||+||++||| ++||||||+|+++++|||+||||++|++|+ ++|| ..|++||+||||
T Consensus 53 ~q~~~l~~~~-~~~Pe~~~~ik~lV~~Grl-~~G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG--~~~~vgwlpD~F 127 (875)
T PRK09819 53 GQTSLLEDYL-AVKPEDKERVKKLVQAGKL-IIGPWYTQTDQLVVSGESIVRNLLYGIRDC-REFG--EPMKIGYLPDSF 127 (875)
T ss_pred hhHHHHHHHH-HhChHHHHHHHHHHHcCCE-eECcEEeecccccCCHHHHHHHHHHHHHHH-HHcC--CCCceeeecCCC
Confidence 5788887777 6799999999999999999 789999999999999999999999999999 7999 789999999999
Q ss_pred CCCHHHHHHHHHCCCCceeeecccHHHHHHhhhCCcceEEEecCCCCCCCcceeeeecCCCCCCCCCCCccCCCCCCCcc
Q psy10965 84 GHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGVMYNIYDPPPGFCFDTYCEDEPIM 163 (400)
Q Consensus 84 Ghs~~lPqil~~~Gi~~~~~~R~~~~~~~~~~~~~~~~F~W~g~dg~~~~s~v~t~~~~~~Y~~~~~~~~d~~~~~~p~~ 163 (400)
|||++|||||+++||+++++||+..+.. ..++.+|+|+|+|| |+|+||++|.+|+.+..+.
T Consensus 128 G~s~~lPqIl~~~Gi~~~~~wr~~~~~~----~~~~~~F~W~g~DG----s~V~t~~~~~~Y~~g~~~~----------- 188 (875)
T PRK09819 128 GQSGQMPQIYNGFGITRTLFWRGVSDRH----GTDKTEFLWQSDDG----SEVLAQQLPLGYAIGKYLP----------- 188 (875)
T ss_pred CCcHHHHHHHHhCCCCeEEEEecccccc----cCCCceEEEECCCC----CeEEEEECccccccCCCCC-----------
Confidence 9999999999999999999999864321 24789999999999 9999999999997653221
Q ss_pred CCCCccccchhhhHHHHHHHHHHHhhhcCCCceEEeeeCCCCCcchhHHHHHHHHHHHHHHccCCCCeEEEecChHHHHH
Q psy10965 164 DNPKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYSTPACYLQ 243 (400)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~~~G~D~~~~~a~~~f~~~~~li~~~n~~~~~~~~i~~sT~~~yf~ 243 (400)
.+..+++++++.+++.++. ...++++|+|+|+|+++.. +++.++++.+|+.. ..+++++||+++||+
T Consensus 189 ----~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~-~~~~~~~st~~~yf~ 255 (875)
T PRK09819 189 ----EDEEELKKRLDEYFGVLEK---KSSTKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIY-PEREFVISRFENVFE 255 (875)
T ss_pred ----cCHHHHHHHHHHHHHHHhh---cCCCCcEEEecCCCCCccc-----ccHHHHHHHHHhhC-CCCcEEECCHHHHHH
Confidence 1334566666766666554 3568999999999998765 56888899999886 568999999999999
Q ss_pred HHHhcCCCCCCccCCCcccCC-CCCCCccceeeecchhhHHHHHHHHHHHHH-HHHHHhhCCC--CcCh-HHHHHHHHHH
Q psy10965 244 ALNKENITWPSKMDDDFFPFG-SDEHSYWTGYFTSRPSFKYFVYQTNVALQM-TKQLKTSLPN--DTLA-EEQFLIQRAM 318 (400)
Q Consensus 244 ~l~~~~~~lpv~~~gel~~~~-~~~~~yw~G~ytSr~~lK~~~r~~e~~L~~-ae~l~~l~~~--~~~~-~~l~~~w~~l 318 (400)
++++...+||++ +|||++.. .+.| +||||||+++|++||++|++|.. +|+|++++.. ..|| +.|+++||.|
T Consensus 256 ~l~~~~~~lp~~-~GEl~~~~y~~~H---rG~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~l 331 (875)
T PRK09819 256 KLEKQRDNLPTL-KGEFIDGKYMRVH---RSIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEM 331 (875)
T ss_pred HHHhhcCCCCee-eeecCCCcccccc---CCccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999877899999 99998532 2334 99999999999999999999974 8999999865 4688 5899999999
Q ss_pred HhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCCCCCCeE-EEEEcCCC
Q psy10965 319 GIAQHHDAVSGTERQHVTNDYSLYLYEGIQAAMKIINVAYRHLLGDYLPEQQPCLLMNVSQCELPSPTINY-ITLYNRFR 397 (400)
Q Consensus 319 ~~~q~HD~ItGTs~~~V~~d~~~~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~s~~~~~~~~~~~-~~v~Np~~ 397 (400)
+++||||+||||++|+|++|+..|+.++.+.++++++.+++.|+.. ++ .++.. ++||||++
T Consensus 332 l~nq~HD~i~G~sid~V~~d~~~r~~~~~~~~~~l~~~~l~~l~~~----------i~--------~~~~~~~~vfN~l~ 393 (875)
T PRK09819 332 FKNHAHDSIGCCCSDTVHRDIVARYKLAEDLADNLLDFYMRKIADN----------MP--------QSDADKLTVFNLLP 393 (875)
T ss_pred HHhcCCCcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cC--------cCCCCEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999863 11 11223 89999999
Q ss_pred CC
Q psy10965 398 LS 399 (400)
Q Consensus 398 ~~ 399 (400)
|+
T Consensus 394 ~~ 395 (875)
T PRK09819 394 YE 395 (875)
T ss_pred cc
Confidence 95
No 5
>KOG4342|consensus
Probab=100.00 E-value=3e-57 Score=446.88 Aligned_cols=316 Identities=16% Similarity=0.240 Sum_probs=269.3
Q ss_pred eeHHHHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCC
Q psy10965 4 VETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPF 83 (400)
Q Consensus 4 ~E~~~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~F 83 (400)
|.++.-++|+++.+|+.++++++.+.+||+-.|||.||++|.++|+|||+|||++.|++|+.++|| .+.++-|+||+|
T Consensus 327 cSQAqQ~~WlkedhP~~f~kl~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG--~~c~~FWLPDTF 404 (1078)
T KOG4342|consen 327 CSQAQQLEWLKEDHPGLFSKLQEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFG--KMCSEFWLPDTF 404 (1078)
T ss_pred hhhHHHHHHHhhhChhHHHHHHHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhh--hhhcceeccccc
Confidence 457777899999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred CCCHHHHHHHHHCCCCceeeecccHHHHHHhhhCCcceEEEecCCCCCCCcceeeeecC-CCCCCCCCCCccCCCCCCCc
Q psy10965 84 GHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGVMY-NIYDPPPGFCFDTYCEDEPI 162 (400)
Q Consensus 84 Ghs~~lPqil~~~Gi~~~~~~R~~~~~~~~~~~~~~~~F~W~g~dg~~~~s~v~t~~~~-~~Y~~~~~~~~d~~~~~~p~ 162 (400)
|+|+|+|||.+.+||+.|.+++++|+..|. .++..|.|.|.|| |+|++|+.| +.|+....
T Consensus 405 GYSsQ~PQicrlcGidrFLTQKLSWNniNS---FPhsTFnW~glDG----Sqvl~HmPPgntYtad~~------------ 465 (1078)
T KOG4342|consen 405 GYSSQLPQICRLCGIDRFLTQKLSWNNINS---FPHSTFNWEGLDG----SQVLVHMPPGNTYTADGS------------ 465 (1078)
T ss_pred cccchhhHHHHhhcHHHHHHhhccccccCc---CCccceeeeeccC----ceEEEecCCCCcccccCc------------
Confidence 999999999999999999999999998886 4899999999999 999999877 36764321
Q ss_pred cCCCCccccchhhhHHHHHHHHHHHhhhcCCCceEEeee-CCCCCcchhHHHHHHHHHHHHHHccCCCCeEEEec-ChHH
Q psy10965 163 MDNPKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMG-GDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYS-TPAC 240 (400)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~~~G-~D~~~~~a~~~f~~~~~li~~~n~~~~~~~~i~~s-T~~~ 240 (400)
+.+.+..+......-..++=|+.+| +|.++.+++++.+.|.++ +.++...+.-++++.+ |+++
T Consensus 466 --------------v~dVL~tv~qnk~~~~~~~gl~lfG~GDGGGGPT~eML~klrR~-r~~~Nt~G~lP~vqlg~tvde 530 (1078)
T KOG4342|consen 466 --------------VEDVLKTVAQNKDKGRANHGLFLFGFGDGGGGPTQEMLDKLRRI-RSLSNTDGVLPRVQLGITVDE 530 (1078)
T ss_pred --------------HHHHHHHHHhcCCccccCcceEEEEecCCCCCCcHHHHHHHHHh-hcccccCCcccceeecCCHHH
Confidence 2233333333222333444455555 555556677666666543 3344443456789999 9999
Q ss_pred HHHHHHhc---CCCCCCccCCCcccCCCCCCCccceeeecchhhHHHHHHHHHHHHHHHHHHhhCCC----CcCh-HHHH
Q psy10965 241 YLQALNKE---NITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNVALQMTKQLKTSLPN----DTLA-EEQF 312 (400)
Q Consensus 241 yf~~l~~~---~~~lpv~~~gel~~~~~~~~~yw~G~ytSr~~lK~~~r~~e~~L~~ae~l~~l~~~----~~~~-~~l~ 312 (400)
||+++.+. +.+||+| .||||- ++++|+|||++.+|+.+|++|..|+.+|.+++++.. -.|| +.|+
T Consensus 531 ffd~ilkrtnqg~~LptW-~GELyf------EfHrGTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq 603 (1078)
T KOG4342|consen 531 FFDAILKRTNQGHDLPTW-VGELYF------EFHRGTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQ 603 (1078)
T ss_pred HHHHHHhhhccCCccccc-chheEE------EEecCceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHH
Confidence 99999875 4579999 999985 455999999999999999999999999999999976 3577 5999
Q ss_pred HHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10965 313 LIQRAMGIAQHHDAVSGTERQHVTNDYSLYLYEGIQAAMKIINVAYRHLL 362 (400)
Q Consensus 313 ~~w~~l~~~q~HD~ItGTs~~~V~~d~~~~l~~a~~~~~~~~~~~~~~l~ 362 (400)
.+|+.++++||||.+||+|+..|++|.+..+.++...++.++..++..|.
T Consensus 604 ~LWr~~LLcQFHDVlpGSCIeMVykeA~p~~~~v~k~~~tLl~~a~~~L~ 653 (1078)
T KOG4342|consen 604 HLWRLLLLCQFHDVLPGSCIEMVYKEAMPHYEDVRKHGNTLLSAAAAALC 653 (1078)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHhhhhHHHHHHHhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999994
No 6
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=7.7e-52 Score=396.07 Aligned_cols=232 Identities=32% Similarity=0.496 Sum_probs=183.1
Q ss_pred CEEeeHHHHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeec
Q psy10965 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQI 80 (400)
Q Consensus 1 F~~~E~~~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~ 80 (400)
|+|+|+.++++||+. .|+.++++|+||++||||+|||||||+|++++++||+||||++|++|++++|| ..+++||+|
T Consensus 44 f~~~~~~~~~~~~~~-~p~~~~~~~~lv~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg--~~~~~~~~~ 120 (275)
T PF01074_consen 44 FIDGQTAYLEDYLED-APEEFKRIKKLVKEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFG--VRPKVAWQP 120 (275)
T ss_dssp EECTBCHHHHHHHHC-SGHHHHHHHHHHHTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHT--G--SEEEES
T ss_pred EeechhHHHHHHHHh-CCHHHHHHHHHHHhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcC--CCCCeEEeC
Confidence 789999999777777 89999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCCCCHHHHHHHHHCCCCceeeecccHHHHHHhhhCCcceEEEecCCCCCCCcceeeeecCCCCCCCCCCCccCCCCCC
Q psy10965 81 DPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGVMYNIYDPPPGFCFDTYCEDE 160 (400)
Q Consensus 81 D~FGhs~~lPqil~~~Gi~~~~~~R~~~~~~~~~~~~~~~~F~W~g~dg~~~~s~v~t~~~~~~Y~~~~~~~~d~~~~~~ 160 (400)
|+||||+++||||+++||++++++|++++.++.++..+..+|+|+|+|| |+|+||+++.+|..+ ..+.
T Consensus 121 D~FG~~~~lP~il~~~Gi~~~v~~r~~~~~~~~~~~~~~~~F~W~g~dG----s~ilt~~~~~~y~~~-~~~~------- 188 (275)
T PF01074_consen 121 DSFGHSAQLPQILKQFGIKYFVIWRISWNDKNPFKANPQSEFYWQGPDG----SEILTHVLPNYYYGP-WYGS------- 188 (275)
T ss_dssp SSSSB-TCHHHHHHTTT-SEEEESSS-HHHHHHHHHTTSSEEEEE-TTS----TEEEEEE-TST-TSH-HTTC-------
T ss_pred CCCCCchhhHHHHhccCcceEEEeccccccccccccCCCceEEEecCCC----cceeEEecccCCCCC-CCCc-------
Confidence 9999999999999999999999999999999988888999999999999 999999999887651 1111
Q ss_pred CccCCCCccccchhhhHHHHHHHHHHHhhhcCCCceEEeeeCCCCCcchhHHHHHHHHHHHHHHccCCCCeEEEecChHH
Q psy10965 161 PIMDNPKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYSTPAC 240 (400)
Q Consensus 161 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~~~G~D~~~~~a~~~f~~~~~li~~~n~~~~~~~~i~~sT~~~ 240 (400)
.. +.++++++.+++.++.+.++++|+|+|+|... ....+.+.+.|+.+|+.. ..+++++||+++
T Consensus 189 -----------~~-~~~~~~~~~~~~~~~~~~~~~~l~~~G~d~~~---~~~~~~~~~~i~~~~~~~-~~~~i~~sT~~~ 252 (275)
T PF01074_consen 189 -----------EF-EDADELLEQLRKLAKKYYTNNILIPYGDDDDG---GPPDEELIEYINEWNEEY-PGPKIKYSTLSE 252 (275)
T ss_dssp -----------CH-HHHHHHHHHHHHHHCCSSSSEEEEEEEEEHHH---HHHHHHHHHHHHHHHHHG-CTEEEEE--HHH
T ss_pred -----------cc-ccHHHHHHHHHHHHHhcCCCceEEEeecCCCC---CCcHHHHHHHHHHhcccC-CCeEEEECCHHH
Confidence 00 34678889999999999999999999988111 111144555556666654 789999999999
Q ss_pred HHHHHHhcCCCCCCccCCCcccCC
Q psy10965 241 YLQALNKENITWPSKMDDDFFPFG 264 (400)
Q Consensus 241 yf~~l~~~~~~lpv~~~gel~~~~ 264 (400)
||++++++ .++||..+|||+||+
T Consensus 253 yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 253 YFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp HHHHHHHC---B-EE-ES-B-S-E
T ss_pred HHHHHHhc-cCCCcccCCCCCCCC
Confidence 99999998 999998899999873
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-35 Score=319.07 Aligned_cols=294 Identities=19% Similarity=0.232 Sum_probs=237.6
Q ss_pred eeHHHHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCC
Q psy10965 4 VETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPF 83 (400)
Q Consensus 4 ~E~~~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~F 83 (400)
.+...++.|+++..|+..++ ++|+.|+|+.+||+||++|+++++|||++||+++|++|+.++|| ..+++.|.||+|
T Consensus 244 ~s~~~~y~~l~~d~p~l~~~--~~v~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~--~ssri~w~pd~f 319 (943)
T COG0383 244 QSAAALYNWLKPDVPFLFSR--PAVEFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFG--ASSRIYWKPDSF 319 (943)
T ss_pred hhHHHHHHHhcCccHHHhhc--ccccccceEEeecccccccCCccccchhhhhhhccceeeecccC--ccceeEeehhcc
Confidence 36678899999999999999 99999999999999999999999999999999999999999999 889999999999
Q ss_pred CCCHHHHHHHHHCCCCceeeecccHHHHHHhhhCCcceEEEecCCCCCCCcceeeeecCCCCCCCCCCCccCCCCCCCcc
Q psy10965 84 GHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGVMYNIYDPPPGFCFDTYCEDEPIM 163 (400)
Q Consensus 84 Ghs~~lPqil~~~Gi~~~~~~R~~~~~~~~~~~~~~~~F~W~g~dg~~~~s~v~t~~~~~~Y~~~~~~~~d~~~~~~p~~ 163 (400)
|.|++||||+..+|++.|+++++.|++.+.+ ++..|.|+++|| +++++|..+.+|+. |
T Consensus 320 g~s~~Lpqil~p~gi~~f~t~klawn~tn~~---Ph~~~~w~~~dg----~e~~~hds~~~~~~------d--------- 377 (943)
T COG0383 320 GFSGQLPQILEPLGIDVFVTTKLAWNDTNRF---PHDLLRWRWKDG----TENLAHDSICGCSS------D--------- 377 (943)
T ss_pred ccchhHHHHHHhhcchhhhccccchhhccCC---ChhHheeecccc----cccceeecCCCCcc------c---------
Confidence 9999999999999999999999999998864 789999999999 99999987655521 1
Q ss_pred CCCCccccchhhhHHHHHHHHHHHhhhcCCCceEEeee-CCCCCcchhHHHHHHHHHHHHHHccCCCCeEEEecChHHHH
Q psy10965 164 DNPKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMG-GDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYSTPACYL 242 (400)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~~~G-~D~~~~~a~~~f~~~~~li~~~n~~~~~~~~i~~sT~~~yf 242 (400)
... .....+.++ .....++.+| +|++...+.++..+.. . ..+..+|
T Consensus 378 ------~v~-----~~~~~r~~~-----~~~~~~~~~g~gd~ggg~~~dm~~~~~------~-----------~~~~~~~ 424 (943)
T COG0383 378 ------PVH-----REMEYRFEK-----INQVGLYLYGYGDGGGGPSIDMLENPE------L-----------PIAEGVF 424 (943)
T ss_pred ------HHH-----HHHHhhhhh-----hccceeEEeeccCCCCCCCHHHHhccc------c-----------cccccee
Confidence 000 011111111 2334455555 5777665543211111 1 1111122
Q ss_pred HH----HHhcCCCCCCccCCCcccCCCCCCCccceeeecchhhHHHHHHHHHHHHHHHHHHhhCCC-----CcCh-HHHH
Q psy10965 243 QA----LNKENITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNVALQMTKQLKTSLPN-----DTLA-EEQF 312 (400)
Q Consensus 243 ~~----l~~~~~~lpv~~~gel~~~~~~~~~yw~G~ytSr~~lK~~~r~~e~~L~~ae~l~~l~~~-----~~~~-~~l~ 312 (400)
.. +.......|++ .|++|. ++++|+|||+...|..+|.+|..|+.+|.+++++.. ..|| +.++
T Consensus 425 ~~~~~~~~~~~~~~~~~-~~ely~------E~hrg~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~ 497 (943)
T COG0383 425 NTGVEKKTSTLELVPTW-DGELYL------ELHRGTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLN 497 (943)
T ss_pred eecceeeeeeccccccc-chhhhh------hccCceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHH
Confidence 11 11224568999 999986 445999999999999999999999999999998654 3466 5889
Q ss_pred HHHHHHHhhhcccCCCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy10965 313 LIQRAMGIAQHHDAVSGTERQHVTN-DYSLYLYEGIQAAMKIINVAYRHLLG 363 (400)
Q Consensus 313 ~~w~~l~~~q~HD~ItGTs~~~V~~-d~~~~l~~a~~~~~~~~~~~~~~l~~ 363 (400)
++|+.++++|+||+++||++..|+. +....+..+...+..++..+++.|++
T Consensus 498 ~~w~~~l~~qfhdvlpgs~i~~vy~~~a~~~~~~~~~~~~~i~~~~~~~l~~ 549 (943)
T COG0383 498 ELWKGLLLAQFHDVLPGSSIKEVYSYDALPLLEVVQKGASKIAELALKVLSS 549 (943)
T ss_pred HHHHHhhhhhceeeccccceeeechhhHHHHHHhhhccchhhhhhhhhhhhh
Confidence 9999999999999999999999999 99999999999999999999998865
No 8
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.91 E-value=4.3e-25 Score=171.42 Aligned_cols=75 Identities=33% Similarity=0.494 Sum_probs=66.6
Q ss_pred CccceeeecchhhHHHHHHHHHHHHHHHHHHhhCCC----CcCh-HHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHH
Q psy10965 269 SYWTGYFTSRPSFKYFVYQTNVALQMTKQLKTSLPN----DTLA-EEQFLIQRAMGIAQHHDAVSGTERQHVTNDYSLYL 343 (400)
Q Consensus 269 ~yw~G~ytSr~~lK~~~r~~e~~L~~ae~l~~l~~~----~~~~-~~l~~~w~~l~~~q~HD~ItGTs~~~V~~d~~~~l 343 (400)
+||+|||||||.+|++||++|++|+.+|++++++.. ..|| +.++++|+.++++||||+|||||++.|++|+.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 489999999999999999999999999999999976 3466 59999999999999999999999999999999986
No 9
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.89 E-value=1.2e-23 Score=162.93 Aligned_cols=74 Identities=28% Similarity=0.384 Sum_probs=68.3
Q ss_pred ccceeeecchhhHHHHHHHHHHHHHHHHHHhhCCC----CcCh-HHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHH
Q psy10965 270 YWTGYFTSRPSFKYFVYQTNVALQMTKQLKTSLPN----DTLA-EEQFLIQRAMGIAQHHDAVSGTERQHVTNDYSLYL 343 (400)
Q Consensus 270 yw~G~ytSr~~lK~~~r~~e~~L~~ae~l~~l~~~----~~~~-~~l~~~w~~l~~~q~HD~ItGTs~~~V~~d~~~~l 343 (400)
||+||||||+++|++||++|++|+.+|.+.+++.. ..|| +.++.+||.++++||||+|||||+++|++|+..|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 68999999999999999999999999999998753 3577 58999999999999999999999999999999874
No 10
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.1e-21 Score=212.65 Aligned_cols=300 Identities=14% Similarity=0.065 Sum_probs=227.9
Q ss_pred hCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCCCHHHHHHHHH
Q psy10965 16 QNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFAD 95 (400)
Q Consensus 16 ~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGhs~~lPqil~~ 95 (400)
..|+.+++++.+++.|++ .+|++|.+.|.+++++|+.+||+++|..++ .++| ...++||.+|+||+..|.||++.+
T Consensus 64 v~~~~~~~~~~~~~~~~l-~ig~~~~~~~~~~~~~e~~~rn~l~~~~~~-~~~~--~~~~~g~~~d~~g~~~qa~~~~~~ 139 (943)
T COG0383 64 VPPELKDRVKLLIASGKL-GIGPWYTQTDTFILSGESNVRNLLIGEFDA-ERFG--KAMKLGYFPDTFGNLGQAPQLYEN 139 (943)
T ss_pred ecccchhhHHHHHhhcCc-cccCCCCeeEEEEeccccceeeeecchHHH-HHhh--hhhccccccccchhhhhhhHHHHh
Confidence 578888999999999999 899999999999999999999999999999 7888 678999999999999999999999
Q ss_pred CCCCceeeecccHHHH--H-------HhhhCCcceEEEecCCCCCCCcceeeeecCCCCCCCCCCCccCCCCCCCccCCC
Q psy10965 96 MGFDGVFFGRIDHEDI--A-------LRKKNKTMEMVWRPDDTLGPEGDFFTGVMYNIYDPPPGFCFDTYCEDEPIMDNP 166 (400)
Q Consensus 96 ~Gi~~~~~~R~~~~~~--~-------~~~~~~~~~F~W~g~dg~~~~s~v~t~~~~~~Y~~~~~~~~d~~~~~~p~~~~~ 166 (400)
+||+.+.|+|+..-.. + ........+..|+++|| ++++.+.++..|..+..+.-++.|
T Consensus 140 ~~i~~~~f~r~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~----~~~l~il~~~~y~~g~~I~~~gha--------- 206 (943)
T COG0383 140 AGISAVAFGRGAALIGFGQLVLFELLEAYGSDFSEITWSEPDG----SQVLGILLANGYSNGNEIPAVGHA--------- 206 (943)
T ss_pred cCCchhhcccccchhhcccchhhhhhhHhcCcCcccccccCCc----hhhHHHHHHHHhhccccccccchh---------
Confidence 9999999999985221 1 12234667788999999 889888888899887664322111
Q ss_pred CccccchhhhHHHHHHHHHHHhhhcCCCceEEeeeCCCCCcchhHHHHHHHHHHHHHHccCCCCeEEEecC----hHHHH
Q psy10965 167 KLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYST----PACYL 242 (400)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~~~G~D~~~~~a~~~f~~~~~li~~~n~~~~~~~~i~~sT----~~~yf 242 (400)
-++.....-++..++. ..+..+++|.|.|+.+.. .++...+++.|... .++...++. .+.|+
T Consensus 207 -----hid~aWlw~l~et~r~---a~ts~~~~~~l~D~~p~~-----~~~~s~~~~y~~l~-~d~p~l~~~~~v~~~~~~ 272 (943)
T COG0383 207 -----HIDTAWLWPLDETERK---ASTSFSLVMNLMDHYPVQ-----KFVQSAAALYNWLK-PDVPFLFSRPAVEFEQWE 272 (943)
T ss_pred -----hHHHHHhccHHHHHHH---HhhhhhheecccccChhh-----hhhhhHHHHHHHhc-CccHHHhhcccccccceE
Confidence 1111122222333432 457778899999998876 66777777877765 555555555 55555
Q ss_pred HHHHhc-CCCCCCccCCCcccCCC-CCCCc--cceeeecchhhHHHHHHHHHHH-HHHHHHHh-------hCCC--CcCh
Q psy10965 243 QALNKE-NITWPSKMDDDFFPFGS-DEHSY--WTGYFTSRPSFKYFVYQTNVAL-QMTKQLKT-------SLPN--DTLA 308 (400)
Q Consensus 243 ~~l~~~-~~~lpv~~~gel~~~~~-~~~~y--w~G~ytSr~~lK~~~r~~e~~L-~~ae~l~~-------l~~~--~~~~ 308 (400)
...... ..++++. +||+..-.. ....| ....-+||..+|..+...+..| +.++++.. ++.. ..+|
T Consensus 273 ~~~g~~ve~d~n~~-sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~P 351 (943)
T COG0383 273 IVGGMWVEEDLNTP-SGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFP 351 (943)
T ss_pred EeecccccccCCcc-ccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCC
Confidence 444332 3457889 999975322 10011 1455699999999999998887 66777665 4433 4566
Q ss_pred -HHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHH
Q psy10965 309 -EEQFLIQRAMGIAQHHDAVSGTERQHVTNDYSLYLYEGI 347 (400)
Q Consensus 309 -~~l~~~w~~l~~~q~HD~ItGTs~~~V~~d~~~~l~~a~ 347 (400)
+.+.-.|+..+.++.||++|||+.|.|+.++..|..+..
T Consensus 352 h~~~~w~~~dg~e~~~hds~~~~~~d~v~~~~~~r~~~~~ 391 (943)
T COG0383 352 HDLLRWRWKDGTENLAHDSICGCSSDPVHREMEYRFEKIN 391 (943)
T ss_pred hhHheeecccccccceeecCCCCcccHHHHHHHhhhhhhc
Confidence 689999999999999999999999999999999998833
No 11
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.34 E-value=2.5e-06 Score=84.91 Aligned_cols=90 Identities=19% Similarity=0.312 Sum_probs=71.4
Q ss_pred hhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCH-HHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCCCHHHHHHH
Q psy10965 15 EQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHY-SSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAEVALEF 93 (400)
Q Consensus 15 ~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~-Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGhs~~lPqil 93 (400)
+...+..+.+|+|+++|++|++|++|..+=..+..- |++..|+..|.+.+++.|| .+|+..|+|-. +.+..+..++
T Consensus 107 ~~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG--~~P~G~W~pE~-a~~~~l~~~l 183 (360)
T PF03065_consen 107 EIIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFG--RRPRGFWLPEC-AYSPGLEEIL 183 (360)
T ss_dssp HTTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHS--S--SBEE-GGG--B-TTHHHHH
T ss_pred chhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC--CCCCceECccc-ccCHHHHHHH
Confidence 334556999999999999999999999998888888 9999999999999999999 99999999876 8999999999
Q ss_pred HHCCCCceeeeccc
Q psy10965 94 ADMGFDGVFFGRID 107 (400)
Q Consensus 94 ~~~Gi~~~~~~R~~ 107 (400)
+++||+++++.--.
T Consensus 184 ~~~Gi~~~i~d~~~ 197 (360)
T PF03065_consen 184 AEAGIRYTILDGHQ 197 (360)
T ss_dssp HHTT--EEEEECHH
T ss_pred HHcCCEEEEECcHH
Confidence 99999999986433
No 12
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.0019 Score=64.64 Aligned_cols=92 Identities=18% Similarity=0.318 Sum_probs=82.4
Q ss_pred HHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCH-HHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCCCHH
Q psy10965 10 WRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHY-SSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAE 88 (400)
Q Consensus 10 ~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~-Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGhs~~ 88 (400)
+..|+..+++..+++|++.+.|.+|+++...+-.---+-.. |++--|++.|.+-.++.|| ..|+--|+|-+ ++...
T Consensus 115 ~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~~peAi~AQi~~g~~~ye~~fg--~~P~GiWlPEc-ay~pg 191 (504)
T COG1543 115 RGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLGGPEAIEAQILTGIELYEEHFG--LAPKGIWLPEC-AYAPG 191 (504)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcCCchhhHHHHHHHHHHHHHHhC--CCCCceechhh-ccccc
Confidence 45788888999999999999999999999888666555555 9999999999999999999 67999999955 99999
Q ss_pred HHHHHHHCCCCceeee
Q psy10965 89 VALEFADMGFDGVFFG 104 (400)
Q Consensus 89 lPqil~~~Gi~~~~~~ 104 (400)
++.+|+..||+++++.
T Consensus 192 ie~~l~~~Gi~yf~vd 207 (504)
T COG1543 192 IERILKDAGIEYFFVD 207 (504)
T ss_pred hHHHHHhcCceEEEec
Confidence 9999999999999976
No 13
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=95.80 E-value=0.022 Score=46.95 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCC-CCHHHHHHHHHCCCC
Q psy10965 21 RASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFG-HSAEVALEFADMGFD 99 (400)
Q Consensus 21 ~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FG-hs~~lPqil~~~Gi~ 99 (400)
.+.+++++++| +|+.+-+|.-++....+.|.+.+++..+++.+++.+| .. -. +..=||| ++..+-++++++|++
T Consensus 47 ~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g--~~-~~-~f~~P~g~~~~~~~~~l~~~G~~ 121 (123)
T PF01522_consen 47 PDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSREILEEITG--RP-PK-GFRYPFGSYDDNTLQALREAGYK 121 (123)
T ss_dssp HHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHHHHHHHHHS--SE-ES-EEE-GGGEECHHHHHHHHHTT-E
T ss_pred cccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHhC--CC-Cc-EEECCCCCCCHHHHHHHHHcCCC
Confidence 68899999999 9999999999998888999999999999999999999 52 23 3445666 488888999999997
Q ss_pred c
Q psy10965 100 G 100 (400)
Q Consensus 100 ~ 100 (400)
+
T Consensus 122 y 122 (123)
T PF01522_consen 122 Y 122 (123)
T ss_dssp E
T ss_pred c
Confidence 5
No 14
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=95.59 E-value=0.95 Score=43.86 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=68.3
Q ss_pred HHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCCCHHHHH
Q psy10965 12 WWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAEVAL 91 (400)
Q Consensus 12 W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGhs~~lPq 91 (400)
|+-+.+|+ .+|+.+++| .|+.+-||...+....+.+...++|..+.+-+++..| . +..||.. -.+|..++.
T Consensus 100 ~~~e~~P~---~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s~~~i~~~tG--~-~P~G~~~--~~~s~~T~~ 170 (297)
T TIGR03212 100 MALARNPE---AVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEAIRLHTEVTG--E-RPLGWYT--GRTSPNTRR 170 (297)
T ss_pred HHHHHCHH---HHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHHHHHHHHHhC--C-CCceEEC--CCCChhHHH
Confidence 44555665 566677889 8999999998877777889999999999999977778 4 4677863 368999999
Q ss_pred HHHH-CCCCceeeeccc
Q psy10965 92 EFAD-MGFDGVFFGRID 107 (400)
Q Consensus 92 il~~-~Gi~~~~~~R~~ 107 (400)
|+++ .||.+..-+..+
T Consensus 171 LL~e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 171 LVAEEGGFLYDADSYAD 187 (297)
T ss_pred HHHHhcCceEeCchhhc
Confidence 9999 999877644433
No 15
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=94.31 E-value=4.1 Score=43.53 Aligned_cols=88 Identities=17% Similarity=0.300 Sum_probs=70.3
Q ss_pred HHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCC----CHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCC
Q psy10965 10 WRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATP----HYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGH 85 (400)
Q Consensus 10 ~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~----~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGh 85 (400)
-.+-....++..+.+|++++.|+.|++.--|-.+=..+. -.+++++|+..+.+..++-|| ..|+..|.+ =+=.
T Consensus 171 l~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG--~~p~~~~~t-El~y 247 (615)
T COG1449 171 LEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFG--VWPSGFWNT-ELAY 247 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhC--CCCccccCh-hhhc
Confidence 344455567888999999999999999877754433222 346999999999999999999 788887775 3578
Q ss_pred CHHHHHHHHHCCCCc
Q psy10965 86 SAEVALEFADMGFDG 100 (400)
Q Consensus 86 s~~lPqil~~~Gi~~ 100 (400)
+.++.++++.+|+..
T Consensus 248 ~~~i~~~~~e~G~~~ 262 (615)
T COG1449 248 NDQILEYFEESGFSW 262 (615)
T ss_pred cHHHHHHHHHcCCcc
Confidence 899999999999994
No 16
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=92.78 E-value=0.63 Score=43.08 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=64.4
Q ss_pred HHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCC-CCHHHHHHHHHCCCCc
Q psy10965 22 ASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFG-HSAEVALEFADMGFDG 100 (400)
Q Consensus 22 ~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FG-hs~~lPqil~~~Gi~~ 100 (400)
+.+|+++++|- |+-+-+|.-++-...+.+.+.+++....+.+++..| .. ...|..=|+| ++..+.+++++.|+..
T Consensus 80 ~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~~~G--~~-~~~~fR~P~G~~~~~~~~~l~~~Gy~~ 155 (224)
T TIGR02884 80 DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKKVTG--QK-EMKYFRPPRGVFSERTLAYTKELGYYT 155 (224)
T ss_pred HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHHHHhC--CC-CCCEEeCCCCCcCHHHHHHHHHcCCcE
Confidence 67889999995 688889998888888999999999999999988888 43 2457778898 5778999999999975
Q ss_pred e
Q psy10965 101 V 101 (400)
Q Consensus 101 ~ 101 (400)
+
T Consensus 156 v 156 (224)
T TIGR02884 156 V 156 (224)
T ss_pred E
Confidence 3
No 17
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=92.77 E-value=0.8 Score=41.02 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=61.6
Q ss_pred HHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCC-CCHHHHHHHHHCCCCc
Q psy10965 22 ASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFG-HSAEVALEFADMGFDG 100 (400)
Q Consensus 22 ~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FG-hs~~lPqil~~~Gi~~ 100 (400)
+.+|+++++|- |+-+-+|.-++..-.+.+.+.+++..+.+.+++..| ..|+ |..=|+| ++..+.+++++.|+..
T Consensus 49 ~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g--~~~~--~fr~P~G~~~~~~~~~l~~~G~~~ 123 (191)
T TIGR02764 49 ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTG--KKPT--LFRPPSGAFNKAVLKAAESLGYTV 123 (191)
T ss_pred HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhC--CCCC--EEECCCcCCCHHHHHHHHHcCCeE
Confidence 57888999995 799999999888888899999999999999988888 5554 4445665 6777888999999974
No 18
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=91.29 E-value=0.89 Score=43.28 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=66.2
Q ss_pred HHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCCCHH---
Q psy10965 12 WWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAE--- 88 (400)
Q Consensus 12 W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGhs~~--- 88 (400)
|+.+..| +.+|+++++| .|+.+-+|...+....+.+.+..++....+.+++..| .. -.||.+=.+..+..
T Consensus 51 ~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~~s~~~Le~itG--~~-~~gfRaP~~s~~~~t~~ 123 (265)
T TIGR03006 51 WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIRRSKALLEDLSG--QP-VRGYRAPSFSIGKKNLW 123 (265)
T ss_pred cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHHHHHHHHHHHhC--CC-ceEEECCCCCCCCCcHH
Confidence 4445566 4589999999 6999999998887777889999999999999988778 43 44676555544443
Q ss_pred HHHHHHHCCCCceeee
Q psy10965 89 VALEFADMGFDGVFFG 104 (400)
Q Consensus 89 lPqil~~~Gi~~~~~~ 104 (400)
..+++++.||.+..-.
T Consensus 124 a~~iL~e~Gy~YdsS~ 139 (265)
T TIGR03006 124 ALDVLAEAGYRYSSSI 139 (265)
T ss_pred HHHHHHHCCCEEEEee
Confidence 4689999999876544
No 19
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=89.02 E-value=2.6 Score=40.20 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=62.6
Q ss_pred HHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCC-CHHHHHHHHHCCCCc
Q psy10965 22 ASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGH-SAEVALEFADMGFDG 100 (400)
Q Consensus 22 ~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGh-s~~lPqil~~~Gi~~ 100 (400)
+.+|+++++|- |+-+-+|.-++....+.+.+.+++..+.+.+++..| ..|+ |..=|+|. +..+-+++++.|+..
T Consensus 128 ~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i~~~~G--~~p~--~fRpP~G~~n~~~~~~l~~~G~~~ 202 (268)
T TIGR02873 128 QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEIIEATIG--VTPK--WFAPPSGSFNDNVVQIAADLQMGT 202 (268)
T ss_pred HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHHHHHhC--CCCC--EEECCCCCCCHHHHHHHHHCCCeE
Confidence 45788899995 699999999998888999999999999999988899 6555 66668875 678888999999964
No 20
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=82.97 E-value=47 Score=32.15 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=62.2
Q ss_pred HHHHHHHcCceEEEcceeeecC----CCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCCCHHHHHHHHHCCC
Q psy10965 23 SVKELVDQGRLEFLLGGWCMSD----EATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGF 98 (400)
Q Consensus 23 ~vk~lV~~Grle~vgg~~v~~D----e~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGhs~~lPqil~~~Gi 98 (400)
.+|+.+++ .|+-+-+|.-.. ....+.+.+.+++..+.+-+++..| . +-.||-+=.+-.+..+..+++++||
T Consensus 93 lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG--~-~p~g~raPgw~~~~~tl~ll~e~Gf 167 (296)
T PRK15394 93 IIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIG--Q-PVTCSAAAGWRADQRVVEAKEAFGF 167 (296)
T ss_pred HHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhC--C-CCCEEeCCCccCCHHHHHHHHHcCC
Confidence 45666666 889899998663 3456778999999999999988888 4 3567888788889999999999999
Q ss_pred Cceeeecc
Q psy10965 99 DGVFFGRI 106 (400)
Q Consensus 99 ~~~~~~R~ 106 (400)
.+-.-.|.
T Consensus 168 ~Y~Ss~~~ 175 (296)
T PRK15394 168 RYNSDCRG 175 (296)
T ss_pred eeecCCCC
Confidence 98754444
No 21
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=82.02 E-value=62 Score=35.06 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=61.1
Q ss_pred HHHHHHHHcCceEEEcceeeecCCCC--------------------CCH-------HHHHHHHHHHHHHHHHhcCCCCCc
Q psy10965 22 ASVKELVDQGRLEFLLGGWCMSDEAT--------------------PHY-------SSLIDQMTLGLKYLNDTFGECGQP 74 (400)
Q Consensus 22 ~~vk~lV~~Grle~vgg~~v~~De~l--------------------~~~-------Eslirql~~G~~~~~~~fG~~~~~ 74 (400)
++||+++++|-+||-+-+|..+.... ..+ +.+.+.+...++.+++..| ..|
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG--~~p 245 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAG--KNP 245 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhC--CCC
Confidence 68999999999999888886443110 012 2366789999999999999 655
Q ss_pred ceeeecCCCC-CCHHHHHHHHHCCCCceeeecc
Q psy10965 75 RVAWQIDPFG-HSAEVALEFADMGFDGVFFGRI 106 (400)
Q Consensus 75 ~v~w~~D~FG-hs~~lPqil~~~Gi~~~~~~R~ 106 (400)
++ ..=||| ++..+-.++++.|++..++.+-
T Consensus 246 ~~--FayPyG~~n~~~~~iakeaGY~~afT~~~ 276 (671)
T PRK14582 246 RV--WVWPYGEANGIALEELKKLGYDMAFTLES 276 (671)
T ss_pred cE--EecCCCCCCHHHHHHHHHCCCeEEEEeCC
Confidence 54 566888 5677889999999998887543
No 22
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=77.80 E-value=9.8 Score=41.04 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCceEEEcceeeecCCCC--------------------CCHH-------HHHHHHHHHHHHHHHhcCCCCC
Q psy10965 21 RASVKELVDQGRLEFLLGGWCMSDEAT--------------------PHYS-------SLIDQMTLGLKYLNDTFGECGQ 73 (400)
Q Consensus 21 ~~~vk~lV~~Grle~vgg~~v~~De~l--------------------~~~E-------slirql~~G~~~~~~~fG~~~~ 73 (400)
.++||+++++|-+||-.-+|..+...+ ..+| .+-+.+....+.+++..| ..
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG--~~ 244 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATG--KQ 244 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 468999999999999999998764211 1233 256678889999988899 65
Q ss_pred cceeeecCCCC-CCHHHHHHHHHCCCCceeeeccc
Q psy10965 74 PRVAWQIDPFG-HSAEVALEFADMGFDGVFFGRID 107 (400)
Q Consensus 74 ~~v~w~~D~FG-hs~~lPqil~~~Gi~~~~~~R~~ 107 (400)
|+ +..=||| ++..+-+++++.|++.+++.+..
T Consensus 245 p~--~FayPyG~yn~~~~~iak~aGy~~afTt~~G 277 (672)
T PRK14581 245 PR--VWVWPYGAPNGTVLNILRQHGYQLAMTLDPG 277 (672)
T ss_pred CC--EEEcCCCCcCHHHHHHHHHCCCcEEEECCCC
Confidence 55 3557898 58889999999999998887654
No 23
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=76.59 E-value=3.5 Score=29.86 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCceEEEccee
Q psy10965 18 EQVRASVKELVDQGRLEFLLGGW 40 (400)
Q Consensus 18 p~~~~~vk~lV~~Grle~vgg~~ 40 (400)
.+.++=+-++|++|+|+++||-|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEE
Confidence 36677788999999999999987
No 24
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=46.26 E-value=1e+02 Score=30.93 Aligned_cols=88 Identities=11% Similarity=0.102 Sum_probs=69.6
Q ss_pred HHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCCCHHHH
Q psy10965 11 RWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAEVA 90 (400)
Q Consensus 11 ~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGhs~~lP 90 (400)
.=+.+++|.+-+.-.+|=++|+| .+|..+.+.+.+.+|+..=++. ++. ...++....=.+||+..+.
T Consensus 4 ~~~~~~n~~~~~~a~~~~~~g~~--------~~~~yvIDl~~I~~N~~~l~~~----~~~-~~~~l~~vvKAna~~~~ia 70 (382)
T cd06811 4 EALLKRNPALIEAALTLHQSGAI--------PPDTYVIDLDQIEENARLLAET----AEK-YGIELYFMTKQFGRNPFLA 70 (382)
T ss_pred HHHhhhCHHHHHHHHHHHHcCCC--------CCCEEEecHHHHHHHHHHHHHH----Hhh-CCCEEEEEEccCCCCHHHH
Confidence 33567899999999999999998 5777888988888888755444 431 1247788888888889999
Q ss_pred HHHHHCCCCceeeecccHHHH
Q psy10965 91 LEFADMGFDGVFFGRIDHEDI 111 (400)
Q Consensus 91 qil~~~Gi~~~~~~R~~~~~~ 111 (400)
.++.+.|++++.+..+.....
T Consensus 71 ~~l~~~G~~g~~vas~~Ea~~ 91 (382)
T cd06811 71 RALLEAGIPGAVAVDFKEARA 91 (382)
T ss_pred HHHHHcCCCeEeEecHHHHHH
Confidence 999999999999988776543
No 25
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=46.12 E-value=25 Score=23.53 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.2
Q ss_pred HHHHhhhCHHH-HHHHHHHHHcCceEEEcceeee-cCC
Q psy10965 10 WRWWEEQNEQV-RASVKELVDQGRLEFLLGGWCM-SDE 45 (400)
Q Consensus 10 ~~W~~~~~p~~-~~~vk~lV~~Grle~vgg~~v~-~De 45 (400)
-.|+.+..+.. +.+.+++|++|++ .|+|--+. ++.
T Consensus 4 d~~L~~~~~~~sr~~a~~~I~~g~V-~VNg~~v~~~~~ 40 (48)
T PF01479_consen 4 DKFLSRLGLASSRSEARRLIKQGRV-KVNGKVVKDPSY 40 (48)
T ss_dssp HHHHHHTTSSSSHHHHHHHHHTTTE-EETTEEESSTTS
T ss_pred HHHHHHcCCcCCHHHHHHhcCCCEE-EECCEEEcCCCC
Confidence 35666666664 9999999999999 89988776 443
No 26
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=42.45 E-value=31 Score=24.40 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=29.7
Q ss_pred HHHHHHHhhhCH-HHHHHHHHHHHcCceEEEcceee-ecCCCCCCH
Q psy10965 7 SFFWRWWEEQNE-QVRASVKELVDQGRLEFLLGGWC-MSDEATPHY 50 (400)
Q Consensus 7 ~~~~~W~~~~~p-~~~~~vk~lV~~Grle~vgg~~v-~~De~l~~~ 50 (400)
.=|..|+.+... ..+.++++++++|++ .|+|--+ .+..-+..|
T Consensus 9 ~rLd~~L~~~~~~~SR~~~k~li~~G~V-~VNg~~~~~~~~~l~~G 53 (59)
T TIGR02988 9 ITLGQLLKELGIIDSGGQAKWFLQENEV-LVNGELENRRGKKLYPG 53 (59)
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHcCCE-EECCEEccCCCCCCCCC
Confidence 345577777532 268999999999999 8998877 444444333
No 27
>PRK10148 hypothetical protein; Provisional
Probab=40.14 E-value=8.6 Score=33.03 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=13.6
Q ss_pred ceeeecCCCCCCHHH
Q psy10965 75 RVAWQIDPFGHSAEV 89 (400)
Q Consensus 75 ~v~w~~D~FGhs~~l 89 (400)
+.||..|+||+++++
T Consensus 124 ~~g~v~D~fGi~W~l 138 (147)
T PRK10148 124 GFGKVTDKFGVPWMI 138 (147)
T ss_pred ccEEEECCCCCEEEE
Confidence 789999999999865
No 28
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=39.54 E-value=28 Score=27.54 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.7
Q ss_pred HHHhhhCHHHHHHHHHHHHcCce
Q psy10965 11 RWWEEQNEQVRASVKELVDQGRL 33 (400)
Q Consensus 11 ~W~~~~~p~~~~~vk~lV~~Grl 33 (400)
.-++..+|+.+++|+..|+-|+|
T Consensus 3 ~li~~mtPevY~rL~~AVElGKW 25 (93)
T PF07023_consen 3 QLIDSMTPEVYERLKQAVELGKW 25 (93)
T ss_pred HHHHhCCHHHHHHHHHHHHhCcC
Confidence 44677899999999999999999
No 29
>PF10549 ORF11CD3: ORF11CD3 domain; InterPro: IPR018877 This entry represents the carboxy-terminal domain from ORF11 (Q9XJS9 from SWISSPROT), one of the proteins of Pseudomonas phage D3 (Bacteriophage D3). The function of these proteins are unknown [].
Probab=39.24 E-value=30 Score=24.79 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=23.0
Q ss_pred HHHHHhhhCHHHHHHHHHHHHcCceEE
Q psy10965 9 FWRWWEEQNEQVRASVKELVDQGRLEF 35 (400)
Q Consensus 9 ~~~W~~~~~p~~~~~vk~lV~~Grle~ 35 (400)
|.+| +...|...++|+.|..++|+.+
T Consensus 29 L~~W-k~~Kp~l~~ki~~l~~~~Q~~L 54 (57)
T PF10549_consen 29 LNRW-KWKKPQLEQKIEELEEQLQITL 54 (57)
T ss_pred HHHH-HHhhHHHHHHHHHHHHHhhhcc
Confidence 5677 9999999999999999999843
No 30
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=36.35 E-value=29 Score=28.28 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCceEEEcceeee
Q psy10965 20 VRASVKELVDQGRLEFLLGGWCM 42 (400)
Q Consensus 20 ~~~~vk~lV~~Grle~vgg~~v~ 42 (400)
..-||++||++|+||+.|.--.|
T Consensus 84 ~~~Ri~~Li~~G~le~~g~~~~m 106 (111)
T PF12395_consen 84 LEYRIRELISQGVLEIKGDPKDM 106 (111)
T ss_pred HHHHHHHHHHCCCEEEecCCCcc
Confidence 45789999999999998864443
No 31
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=36.02 E-value=2.2e+02 Score=28.27 Aligned_cols=100 Identities=22% Similarity=0.203 Sum_probs=55.4
Q ss_pred CcceEEEe-cCCCCCCCcceeeeecCCCCCC------------CCCCCccCCCCCCCccCCCCccccchhhhHHHHHHHH
Q psy10965 118 KTMEMVWR-PDDTLGPEGDFFTGVMYNIYDP------------PPGFCFDTYCEDEPIMDNPKLHGVNVNARVDEFIEVV 184 (400)
Q Consensus 118 ~~~~F~W~-g~dg~~~~s~v~t~~~~~~Y~~------------~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 184 (400)
....|.|+ .+|| ..|=|.++|..+.. ++.||.-+ .....-...+.++++|+
T Consensus 75 GT~K~l~~~l~dg----~~iEtV~ip~~~r~tlCVSsQvGC~~~C~FCaTg------------~~G~~RNLs~~EIv~Qv 138 (349)
T COG0820 75 GTIKWLFEVLPDG----TMIETVLIPEKDRNTLCVSSQVGCPVGCTFCATG------------QGGLNRNLSAGEIVEQV 138 (349)
T ss_pred CCEEEEEEEcCCC----CEEEEEEEEecCCceEEEecCCCcCCCCCeeccc------------cccceeccCHHHHHHHH
Confidence 45789999 8888 66777778765542 22333210 00111122356777776
Q ss_pred HHHhhhc-------CCCceEEeeeCCCCCcchhHHHHHHHHHHHHHHccCCCC---eEEEecChH
Q psy10965 185 KKYAQAY-------RTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSD---VHVLYSTPA 239 (400)
Q Consensus 185 ~~~~~~~-------~t~~il~~~G~D~~~~~a~~~f~~~~~li~~~n~~~~~~---~~i~~sT~~ 239 (400)
....+.. .+|.+++.+|. +-.+|+++.++++.+|...+.+ -++..||..
T Consensus 139 ~~~~~~~~~~~~~~i~NVV~MGMGE------Pl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsG 197 (349)
T COG0820 139 LLAAKALGEDFGRRISNVVFMGMGE------PLLNLDNVVKALEIINDDEGLGLSKRRITVSTSG 197 (349)
T ss_pred HHHHHhcCccccceeeeEEEecCCc------hhhhHHHHHHHHHhhcCcccccccceEEEEecCC
Confidence 6544322 24455555553 2234677778888888654222 356777744
No 32
>PF10074 DUF2285: Uncharacterized conserved protein (DUF2285); InterPro: IPR018754 This entry contains uncharacterised proteins of unknown function.
Probab=35.27 E-value=7.3 Score=31.64 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=23.7
Q ss_pred HHHhhhCHHHHHHHHHHHHcCceEEEcceee
Q psy10965 11 RWWEEQNEQVRASVKELVDQGRLEFLLGGWC 41 (400)
Q Consensus 11 ~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v 41 (400)
.||+. ...+.+++.+|+.|++ ++.|||-
T Consensus 75 ~~W~~--~~~R~~~~rll~~a~~-l~~gGYr 102 (106)
T PF10074_consen 75 DEWKD--SSLRRRVRRLLRRARA-LMEGGYR 102 (106)
T ss_pred ccccC--hHHHHHHHHHHHHHHH-HHHhhHH
Confidence 46666 5789999999999999 8999984
No 33
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=34.76 E-value=54 Score=24.03 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=21.8
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHcC
Q psy10965 7 SFFWRWWEEQNEQVRASVKELVDQG 31 (400)
Q Consensus 7 ~~~~~W~~~~~p~~~~~vk~lV~~G 31 (400)
.+|+.||+..+++.++.+-..+.+|
T Consensus 39 VlFE~~W~~~~~~ek~~m~~~l~~~ 63 (65)
T TIGR03092 39 VLFEAIWKHANEQEKDEMLETLEQG 63 (65)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4799999999999999998888765
No 34
>PF11921 DUF3439: Domain of unknown function (DUF3439); InterPro: IPR024592 This uncharacterised C-terminal domain is found in variable lymphocyte receptor proteins. VLR are proteins consisting of leucine-rich repeats (LRR) that are assembled into functional receptors through somatic diversification of the incomplete germ-line VLR gene in lamprey and hagfish []. ; PDB: 3RFJ_A 3G3B_A 2R9U_C 2O6S_A 3A79_B 3RFS_A 2O6R_A 3V47_B 3V44_A 3A7C_A ....
Probab=32.27 E-value=37 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=25.0
Q ss_pred eHHHHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCH
Q psy10965 5 ETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHY 50 (400)
Q Consensus 5 E~~~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~ 50 (400)
.|-||.+|+.+. .|.+ .-+.||+.+|.+-+||
T Consensus 4 dIlYLSrWI~qh-------------sgiV-~~~~~~v~PDSAKCSG 35 (122)
T PF11921_consen 4 DILYLSRWISQH-------------SGIV-RDGSGNVDPDSAKCSG 35 (122)
T ss_dssp GGHHHHHHHHHT-------------CCCE-EEESSSB-TTGSBBTT
T ss_pred ccHHHHHHHHHC-------------CCeE-ecCCCccCCCccccCC
Confidence 578999999874 3555 6788899999999886
No 35
>PRK12465 xylose isomerase; Provisional
Probab=31.71 E-value=2.2e+02 Score=29.00 Aligned_cols=66 Identities=14% Similarity=0.288 Sum_probs=40.3
Q ss_pred chhhhHHHHHHHHHHHhhhc-C-CCceEEeeeCCCCCcchhHHHHHHHHHHHHHHccC-CCCeEEEecChHHHH
Q psy10965 172 NVNARVDEFIEVVKKYAQAY-R-TNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKL-NSDVHVLYSTPACYL 242 (400)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~-~-t~~il~~~G~D~~~~~a~~~f~~~~~li~~~n~~~-~~~~~i~~sT~~~yf 242 (400)
..+.+++...+-..+..-.| . ++.=++|.|.+.. +...+++++++++.+.. ..++++.++|++-|.
T Consensus 86 ~Ak~k~daaFEf~~kLG~~~~~FHD~D~~Peg~s~~-----E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs 154 (445)
T PRK12465 86 RAEAKSDAAFEFFTKLGVPYYCFHDIDLAPDADDIG-----EYESNLKHMVGIAKQRQADTGIKLLWGTANLFS 154 (445)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeccccccCCCCCCHH-----HHHHHHHHHHHHHHHHhhhhCceeeeecccccc
Confidence 34566666666666654333 2 3333566775543 23367888888776644 467889999877663
No 36
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=30.35 E-value=75 Score=23.38 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=21.8
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHcC
Q psy10965 7 SFFWRWWEEQNEQVRASVKELVDQG 31 (400)
Q Consensus 7 ~~~~~W~~~~~p~~~~~vk~lV~~G 31 (400)
.+|+.+|+..+++.++.+-..+.+|
T Consensus 40 VlFE~~W~~~~~~ek~~m~~~l~~~ 64 (65)
T PF14098_consen 40 VLFEVIWKNSDESEKQEMVNTLEQG 64 (65)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4799999999999999998887765
No 37
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=29.05 E-value=1.7e+02 Score=33.32 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhhhcC-CC-ceEEeeeCCCCCcchhHHHHHHHHHHHHHHccCCCCeEEEecChHHHHHHHHhc
Q psy10965 176 RVDEFIEVVKKYAQAYR-TN-NVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYSTPACYLQALNKE 248 (400)
Q Consensus 176 ~~~~~~~~~~~~~~~~~-t~-~il~~~G~D~~~~~a~~~f~~~~~li~~~n~~~~~~~~i~~sT~~~yf~~l~~~ 248 (400)
.+++|+...+. ++.. ++ .+|+|.|-...+++-+. ..|++.++..-+. .-.-..-|||..||.-|+..
T Consensus 992 iIDefIss~e~--KWgQ~S~vvlLLPHGyEGQGPdHSS--aRiERfLqlcAe~--nm~Va~psTPA~yFHLLRrq 1060 (1228)
T PRK12270 992 IIDEFISSGEA--KWGQRSGVVLLLPHGYEGQGPDHSS--ARIERFLQLCAEG--NMTVAQPSTPANYFHLLRRQ 1060 (1228)
T ss_pred HHHHHHhhhHh--hhccccceEEEccCCcCCCCCCcch--HHHHHHHHhhccC--CeEEEccCChHHHHHHHHHH
Confidence 35566654331 2332 44 45578885555554221 4566555544332 22345669999999998764
No 38
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.41 E-value=1.8e+02 Score=24.27 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=28.8
Q ss_pred cCCCceEEeee-CCCCCc-chhHHHHHHHHHHHHHHccCCCCeEEEecC
Q psy10965 191 YRTNNVIITMG-GDFHYV-VASAWFKNIDKLIKYVNAKLNSDVHVLYST 237 (400)
Q Consensus 191 ~~t~~il~~~G-~D~~~~-~a~~~f~~~~~li~~~n~~~~~~~~i~~sT 237 (400)
...+.+++.+| .|.... ......+++.++++.+-+.. ++..+.+.+
T Consensus 39 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~-p~~~ii~~~ 86 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAAN-PDVKIIVAT 86 (157)
T ss_pred CCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEEe
Confidence 45667778888 565442 44556677888888776653 455555443
No 39
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=28.25 E-value=1.6e+02 Score=21.99 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=22.8
Q ss_pred HHHHHhhhCH----------HHHHHHHHHHHcCceEEEc
Q psy10965 9 FWRWWEEQNE----------QVRASVKELVDQGRLEFLL 37 (400)
Q Consensus 9 ~~~W~~~~~p----------~~~~~vk~lV~~Grle~vg 37 (400)
..+|+++.++ -.+..|+++|++|+|+-+.
T Consensus 27 I~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~~~k 65 (77)
T PF00538_consen 27 IKKYIKAKYKVDLNPANFKSRLKRALKRGVEKGKLVQVK 65 (77)
T ss_dssp HHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCTSEEECS
T ss_pred HHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCCcEEeec
Confidence 4577776553 3678899999999999888
No 40
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=28.06 E-value=2.6e+02 Score=23.77 Aligned_cols=47 Identities=11% Similarity=0.271 Sum_probs=29.9
Q ss_pred hcCCCceEEeee-CCCCCc-chhHHHHHHHHHHHHHHccCCCCeEEEecC
Q psy10965 190 AYRTNNVIITMG-GDFHYV-VASAWFKNIDKLIKYVNAKLNSDVHVLYST 237 (400)
Q Consensus 190 ~~~t~~il~~~G-~D~~~~-~a~~~f~~~~~li~~~n~~~~~~~~i~~sT 237 (400)
....+.+++.+| .|.... ...+..+++.++++.+.+.. +..++...+
T Consensus 49 ~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~vi~~~ 97 (174)
T cd01841 49 QKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEF-PNTKIYLLS 97 (174)
T ss_pred hcCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHC-CCCEEEEEe
Confidence 346677888888 554332 44566778888888877653 455555444
No 41
>PF13289 SIR2_2: SIR2-like domain
Probab=26.01 E-value=3.6e+02 Score=21.92 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=50.2
Q ss_pred EeeHHHHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCC
Q psy10965 3 YVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDP 82 (400)
Q Consensus 3 ~~E~~~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~ 82 (400)
..+..|. +.. ...+.....++.+.++..+-|+|=+ ..|. -|++++ +.+.+..|. ..+++ |.+.+
T Consensus 61 lt~~~y~-~~~-~~~~~~~~~l~~~l~~~~~lfiGys--~~D~-------~i~~~l---~~~~~~~~~-~~~~~-~~v~~ 124 (143)
T PF13289_consen 61 LTEDDYE-EYY-SSNPWFPNFLRSLLRSKTLLFIGYS--FNDP-------DIRQLL---RSALENSGK-SRPRH-YIVIP 124 (143)
T ss_pred EcHHHHH-HHh-hhHHHHHHHHHHHHcCCCEEEEEEC--CCCH-------HHHHHH---HHHHHhccC-CCccE-EEEEc
Confidence 3444444 333 3577888999999988888788544 5553 344444 333355662 13344 55455
Q ss_pred CCCCHHHHHHHHHCCCC
Q psy10965 83 FGHSAEVALEFADMGFD 99 (400)
Q Consensus 83 FGhs~~lPqil~~~Gi~ 99 (400)
-.-.......++..||+
T Consensus 125 ~~~~~~~~~~~~~~~i~ 141 (143)
T PF13289_consen 125 DPDDENEREFLEKYGIE 141 (143)
T ss_pred CCchHHHHHHHHHcCCE
Confidence 54477888889999886
No 42
>smart00363 S4 S4 RNA-binding domain.
Probab=25.38 E-value=91 Score=20.77 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=26.4
Q ss_pred HHHhhh-CHHHHHHHHHHHHcCceEEEcceee-ecCCCCCC
Q psy10965 11 RWWEEQ-NEQVRASVKELVDQGRLEFLLGGWC-MSDEATPH 49 (400)
Q Consensus 11 ~W~~~~-~p~~~~~vk~lV~~Grle~vgg~~v-~~De~l~~ 49 (400)
.|+.+. ....+..+++++++|++ .|+|--+ .++.-+..
T Consensus 5 ~~l~~~~~~~s~~~~~~~i~~g~i-~vng~~~~~~~~~l~~ 44 (60)
T smart00363 5 KFLARLGLAPSRSQARKLIEQGRV-KVNGKKVTKPSYIVKP 44 (60)
T ss_pred HHHHHcCcccCHHHHHHHHHcCCE-EECCEEecCCCeEeCC
Confidence 455543 22458999999999999 7888777 55554443
No 43
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=24.80 E-value=98 Score=22.93 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=21.4
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHcC
Q psy10965 7 SFFWRWWEEQNEQVRASVKELVDQG 31 (400)
Q Consensus 7 ~~~~~W~~~~~p~~~~~vk~lV~~G 31 (400)
..|+.||+..++..++.+-..+.+|
T Consensus 42 VlFE~~W~~~~~~ek~~m~~~l~~~ 66 (68)
T PRK02955 42 VLFEVIWKNADENEKDEMLETLEQG 66 (68)
T ss_pred hHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4789999999999999988877765
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=23.99 E-value=2.1e+02 Score=19.55 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHH
Q psy10965 309 EEQFLIQRAMGIAQHHDAVSGTERQHVTNDYSLYLYEGIQ 348 (400)
Q Consensus 309 ~~l~~~w~~l~~~q~HD~ItGTs~~~V~~d~~~~l~~a~~ 348 (400)
+.+.++++.++...|=|..+|. .....+...++.+|.+
T Consensus 16 ~~ik~ay~~l~~~~HPD~~~~~--~~~~~~~~~~l~~Ay~ 53 (60)
T smart00271 16 DEIKKAYRKLALKYHPDKNPGD--KEEAEEKFKEINEAYE 53 (60)
T ss_pred HHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHH
Confidence 6899999999999999987765 3344444444444443
No 45
>KOG4120|consensus
Probab=23.43 E-value=3.7e+02 Score=26.36 Aligned_cols=73 Identities=26% Similarity=0.351 Sum_probs=46.5
Q ss_pred CCCCCCHHHHH-HHHHHHHHHHHHhcCCCCCcceeeecCCCCCCHHHHHHHHHCCCCceeeecccHHHHHHh---hhCCc
Q psy10965 44 DEATPHYSSLI-DQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGRIDHEDIALR---KKNKT 119 (400)
Q Consensus 44 De~l~~~Esli-rql~~G~~~~~~~fG~~~~~~v~w~~D~FGhs~~lPqil~~~Gi~~~~~~R~~~~~~~~~---~~~~~ 119 (400)
.-..+++.+|- ..|..|-|.|.+++-. .+|+||=. ..++.|..-..+ +..+.
T Consensus 210 aR~t~gsaDL~~kE~~eG~RIL~eKlqr-yrP~VavF-----------------------nGK~I~E~fsk~~~g~~~K~ 265 (426)
T KOG4120|consen 210 ARPTSGSADLRKKEMQEGARILYEKLQR-YRPQVAVF-----------------------NGKGIWEEFSKMLTGKLPKT 265 (426)
T ss_pred ccCCCCcccccHHHHhcchHHHHHHHHh-hCcceEEE-----------------------cCcchHHHHHHHhhccCcce
Confidence 33444455554 3588899999999875 68888643 234444332211 12377
Q ss_pred ceEEEecCC--CCCCCcceeeeecCCC
Q psy10965 120 MEMVWRPDD--TLGPEGDFFTGVMYNI 144 (400)
Q Consensus 120 ~~F~W~g~d--g~~~~s~v~t~~~~~~ 144 (400)
.+|=|++.. + +.+|..+||.+
T Consensus 266 f~FG~QP~k~~d----t~tfv~VmpsS 288 (426)
T KOG4120|consen 266 FVFGWQPEKFGD----TNTFVGVMPSS 288 (426)
T ss_pred eEeccCcccCCC----cceEEEEccCc
Confidence 889999853 4 88999999854
No 46
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=23.40 E-value=2.8e+02 Score=23.86 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCCceEEeee-CCCCCc------chhHHHHHHHHHHHHHHccCCCCeEEEecChH
Q psy10965 192 RTNNVIITMG-GDFHYV------VASAWFKNIDKLIKYVNAKLNSDVHVLYSTPA 239 (400)
Q Consensus 192 ~t~~il~~~G-~D~~~~------~a~~~f~~~~~li~~~n~~~~~~~~i~~sT~~ 239 (400)
..+.+++.+| .|.... ..+....++.++++.+.+.. ++.++...|+.
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ii~~t~~ 116 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLS-PKTKVILITPP 116 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhC-CCCeEEEeCCC
Confidence 4567777888 555432 23455678888888887753 45666666643
No 47
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=23.17 E-value=59 Score=27.70 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCceEEEc
Q psy10965 21 RASVKELVDQGRLEFLL 37 (400)
Q Consensus 21 ~~~vk~lV~~Grle~vg 37 (400)
...|.++|++|||++..
T Consensus 60 ~~~I~~~IreGRL~~~~ 76 (137)
T TIGR03826 60 EKLILKFIREGRLQLKH 76 (137)
T ss_pred HHHHHHHHHcCCeeccC
Confidence 67899999999998876
No 48
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=22.83 E-value=31 Score=28.30 Aligned_cols=15 Identities=33% Similarity=0.652 Sum_probs=13.1
Q ss_pred ceeeecCCCCCCHHH
Q psy10965 75 RVAWQIDPFGHSAEV 89 (400)
Q Consensus 75 ~v~w~~D~FGhs~~l 89 (400)
+.|+..|+|||.+++
T Consensus 113 ~~~~v~Dp~G~~W~i 127 (128)
T cd06588 113 LFGWVTDRFGVSWQI 127 (128)
T ss_pred ccEEEECCCCCEEEe
Confidence 789999999998764
No 49
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=22.70 E-value=2.2e+02 Score=18.27 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=27.6
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHcCceEEEcceeee
Q psy10965 8 FFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCM 42 (400)
Q Consensus 8 ~~~~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~ 42 (400)
-+.+...-..+.....+++|.++|-++..+|.|+-
T Consensus 13 ~la~~l~~s~~tv~~~l~~L~~~g~l~~~~~~~~i 47 (48)
T smart00419 13 EIAELLGLTRETVSRTLKRLEKEGLISREGGRIVI 47 (48)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 34556666678889999999999999988877653
No 50
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=22.57 E-value=66 Score=24.47 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=18.9
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHc
Q psy10965 8 FFWRWWEEQNEQVRASVKELVDQ 30 (400)
Q Consensus 8 ~~~~W~~~~~p~~~~~vk~lV~~ 30 (400)
-|.+=|.+.+|+.++.||++|++
T Consensus 46 pL~kHWN~~~PeaK~~ik~li~~ 68 (82)
T PF10835_consen 46 PLAKHWNGTYPEAKEEIKELIEE 68 (82)
T ss_pred HHHHhhcccCchHHHHHHHHHHH
Confidence 45677888999999999998864
No 51
>PTZ00494 tuzin-like protein; Provisional
Probab=22.56 E-value=2e+02 Score=29.91 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=15.9
Q ss_pred HHHhhhCHHHHHHHHHHHHcCce
Q psy10965 11 RWWEEQNEQVRASVKELVDQGRL 33 (400)
Q Consensus 11 ~W~~~~~p~~~~~vk~lV~~Grl 33 (400)
+|=.+++-+++..+|+.||+.-|
T Consensus 283 EWqRDHHrqmR~l~rERVKERd~ 305 (664)
T PTZ00494 283 RWERDHDKAMQMLRRERVKDTNF 305 (664)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777777655
No 52
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.43 E-value=3.4e+02 Score=23.39 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=30.5
Q ss_pred hcCCCceEEeee-CCCCC-cchhHHHHHHHHHHHHHHccCCCCeEEEecC
Q psy10965 190 AYRTNNVIITMG-GDFHY-VVASAWFKNIDKLIKYVNAKLNSDVHVLYST 237 (400)
Q Consensus 190 ~~~t~~il~~~G-~D~~~-~~a~~~f~~~~~li~~~n~~~~~~~~i~~sT 237 (400)
....+.++++.| .|... .......+++.++++.+.+.. ++.+|...|
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~-~~~~iiv~~ 113 (191)
T cd01836 65 ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKF-PGARVVVTA 113 (191)
T ss_pred cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhC-CCCEEEEEC
Confidence 345677778888 46543 234555678888888887743 455666554
No 53
>PF06254 DUF1019: Protein of unknown function (DUF1019); InterPro: IPR009364 This entry is represented by Bacteriophage phi-80, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 3C4R_C.
Probab=21.71 E-value=1.2e+02 Score=23.79 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=14.3
Q ss_pred HHHHHHHhhhCHHHHHHHHHHH
Q psy10965 7 SFFWRWWEEQNEQVRASVKELV 28 (400)
Q Consensus 7 ~~~~~W~~~~~p~~~~~vk~lV 28 (400)
-+| ||++..+|...+.+..|.
T Consensus 12 ~iF-Rwl~~ds~~~~~~~~~L~ 32 (89)
T PF06254_consen 12 KIF-RWLDNDSPAYREKIMQLS 32 (89)
T ss_dssp HHH-HHHH--SHHHHHHHHHHH
T ss_pred HHH-HHHhCCCHHHHHHHHHHH
Confidence 345 888888888888887775
No 54
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.53 E-value=4e+02 Score=22.41 Aligned_cols=46 Identities=9% Similarity=0.317 Sum_probs=29.3
Q ss_pred cCCCceEEeee-CCCCC-cchhHHHHHHHHHHHHHHccCCCCeEEEecC
Q psy10965 191 YRTNNVIITMG-GDFHY-VVASAWFKNIDKLIKYVNAKLNSDVHVLYST 237 (400)
Q Consensus 191 ~~t~~il~~~G-~D~~~-~~a~~~f~~~~~li~~~n~~~~~~~~i~~sT 237 (400)
.+.+.+++..| .|... .+++.+.++++++++.+-+.. ++.++.+.|
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~-~~~~vi~~~ 94 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHF-PNIKIVVQS 94 (169)
T ss_pred cCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCeEEEEe
Confidence 45677788888 55532 334566678888888776643 455555544
No 55
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=21.19 E-value=1.4e+02 Score=28.51 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCceEEEcce-eeecCCCCCCHH
Q psy10965 19 QVRASVKELVDQGRLEFLLGG-WCMSDEATPHYS 51 (400)
Q Consensus 19 ~~~~~vk~lV~~Grle~vgg~-~v~~De~l~~~E 51 (400)
+.++.|.-|++-|=|+-.|.| |+++|..+.++.
T Consensus 155 ev~~sL~~L~~~glikk~~~g~y~~t~~~l~~~~ 188 (271)
T TIGR02147 155 QVKESLDLLERLGLIKKNEDGFYKQTDKAVSTGD 188 (271)
T ss_pred HHHHHHHHHHHCCCeeECCCCcEEeecceeecCC
Confidence 568889999999999988865 999999998773
No 56
>PF14323 GxGYxYP: GxGYxY sequence motif in domain of unknown function; PDB: 3SGG_A.
Probab=20.87 E-value=9.4e+02 Score=24.87 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHcCceEEE----cceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceeeecCCCCCCHH-HHH
Q psy10965 17 NEQVRASVKELVDQGRLEFL----LGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAE-VAL 91 (400)
Q Consensus 17 ~p~~~~~vk~lV~~Grle~v----gg~~v~~De~l~~~Eslirql~~G~~~~~~~fG~~~~~~v~w~~D~FGhs~~-lPq 91 (400)
.|...+-..+-....-. || |+||.-|+.. .-+.+-.=+..-.+|+ ++.| .+.-.-|--+.++ +.. ...
T Consensus 280 aP~vl~~yy~~at~ND~-fI~gpSG~GY~yP~~~--~~~~l~~~~~~t~~ym-~~~g--~~~~~i~d~~~~~-~~~~~~~ 352 (464)
T PF14323_consen 280 APAVLNYYYKSATPNDY-FIAGPSGAGYMYPSKW--PEENLDAYLKKTNEYM-KKAG--MKVVGIIDNSAGA-NQELYNK 352 (464)
T ss_dssp -HHHHHHHHHH--TTEE-EEE-TTSSSB--GGGS---HHHHHHHHHHHHHHH-HHHT----EEEEEESSGGG--HHHHHH
T ss_pred CHHHHHHHHhhCCCcce-EEecCCCCCccCcCcC--CHHHHHHHHHHHHHHH-HHcC--CeEEEEEeCCccc-chhHHHh
Confidence 34555554444333333 43 4799999976 3355555555566666 7888 6444445433333 333 333
Q ss_pred HHHHCCCCceeeecccHHHHHHhhhCCcceEEEecCCC
Q psy10965 92 EFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRPDDT 129 (400)
Q Consensus 92 il~~~Gi~~~~~~R~~~~~~~~~~~~~~~~F~W~g~dg 129 (400)
.+++-.+++++........ ......|...+.
T Consensus 353 ~~~~~~i~g~~~~~y~~~~-------~~g~i~~~~n~~ 383 (464)
T PF14323_consen 353 YAEQPNIDGIFYLDYSPYN-------GKGRIFWSNNDK 383 (464)
T ss_dssp HHHSTT--EEEEEETT--------------EEE-TTS-
T ss_pred hhccccccEEEEecccccc-------CccceEEecCCC
Confidence 4455688887765544321 135677776665
No 57
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.72 E-value=3.5e+02 Score=22.88 Aligned_cols=46 Identities=20% Similarity=0.410 Sum_probs=27.9
Q ss_pred cCCCceEEeee-CCCCC-cchhHHHHHHHHHHHHHHccCCCCeEEEecC
Q psy10965 191 YRTNNVIITMG-GDFHY-VVASAWFKNIDKLIKYVNAKLNSDVHVLYST 237 (400)
Q Consensus 191 ~~t~~il~~~G-~D~~~-~~a~~~f~~~~~li~~~n~~~~~~~~i~~sT 237 (400)
.....+++..| .|... ...+...+++.++++.+.+.. ++.++...+
T Consensus 49 ~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~-~~~~iil~~ 96 (171)
T cd04502 49 YQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKL-PDTPIAIIS 96 (171)
T ss_pred CCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHC-CCCcEEEEE
Confidence 45667778888 57533 234455677888888776653 444444443
No 58
>PF04567 RNA_pol_Rpb2_5: RNA polymerase Rpb2, domain 5; InterPro: IPR007647 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 5, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=20.66 E-value=94 Score=21.17 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.5
Q ss_pred HHHHHcCceEEEcc
Q psy10965 25 KELVDQGRLEFLLG 38 (400)
Q Consensus 25 k~lV~~Grle~vgg 38 (400)
..||++|.+|+||.
T Consensus 2 ~~ll~~G~vE~id~ 15 (48)
T PF04567_consen 2 DDLLKEGVVEYIDA 15 (48)
T ss_dssp HHHHHTTSEEEEET
T ss_pred hhHhhCCCEEEecc
Confidence 56889999998875
No 59
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=20.58 E-value=3.1e+02 Score=19.12 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=27.3
Q ss_pred HhhhCHHHHHHHHHHHHcCceEEEcceeeecCC
Q psy10965 13 WEEQNEQVRASVKELVDQGRLEFLLGGWCMSDE 45 (400)
Q Consensus 13 ~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~De 45 (400)
+.-...+.+..+..|.+.|.+.-+.||++..|.
T Consensus 24 ~~VS~~TiRRDl~~L~~~g~i~r~~GG~~~~~~ 56 (57)
T PF08220_consen 24 FGVSEMTIRRDLNKLEKQGLIKRTHGGAVLNDS 56 (57)
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEcCEEEeCCC
Confidence 344456779999999999999999999997764
No 60
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=20.56 E-value=3.2e+02 Score=23.54 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=41.6
Q ss_pred HHHhhhCHHHHHHHHHHHHcCceEEEcceeeecC---CCCCCHHHHHHHHHHHHHHHHHhcC
Q psy10965 11 RWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSD---EATPHYSSLIDQMTLGLKYLNDTFG 69 (400)
Q Consensus 11 ~W~~~~~p~~~~~vk~lV~~Grle~vgg~~v~~D---e~l~~~Eslirql~~G~~~~~~~fG 69 (400)
+.|..-.|+.+..|++.++.|++++.= -....+ ..+.==+.+++++..-.+.+++.+|
T Consensus 39 ~~l~~lE~~ir~~i~~~l~RGkV~v~i-~~~~~~~~~~~~~in~~l~~~y~~~l~~l~~~~~ 99 (159)
T PF03755_consen 39 RELSSLEPEIRKLIRKKLSRGKVEVSI-RVERSSESAVELRINEELAKAYYEALKELAEELG 99 (159)
T ss_pred HHHHHHHHHHHHHHHHhcccceEEEEE-EEEECcccCCCcccCHHHHHHHHHHHHHHHHHcC
Confidence 345666789999999999999997542 222222 1222237899999999999999998
No 61
>KOG0570|consensus
Probab=20.22 E-value=5.5e+02 Score=23.33 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCC-CcChHHHHHHHHHHHhhhcc---cCCCCCchhhHHHHHHHHHHH
Q psy10965 280 SFKYFVYQTNVALQMTKQLKTSLPN-DTLAEEQFLIQRAMGIAQHH---DAVSGTERQHVTNDYSLYLYE 345 (400)
Q Consensus 280 ~lK~~~r~~e~~L~~ae~l~~l~~~-~~~~~~l~~~w~~l~~~q~H---D~ItGTs~~~V~~d~~~~l~~ 345 (400)
.++.+||.+ +|...|.+..|+.. ..|++.+..+ +.++.|.|| +-=+--+++.+.--+..++++
T Consensus 78 ELRkLnrsl--llnfleL~~ILi~~P~~~e~Kvedi-~tifvnlHHLiNeyRPhQaResLi~lmE~Qi~~ 144 (223)
T KOG0570|consen 78 ELRKLNRSL--LLNFLELLDILIRAPDMREEKVEDI-RTIFVNLHHLINEYRPHQARESLIMLMERQIEQ 144 (223)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhCchhHHHHHHHH-HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 344444443 34556777777765 4566666665 466777777 333444555554433333433
No 62
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.13 E-value=5.7e+02 Score=25.67 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=16.4
Q ss_pred cceEEEecCCCCCCCcceeeeecCC
Q psy10965 119 TMEMVWRPDDTLGPEGDFFTGVMYN 143 (400)
Q Consensus 119 ~~~F~W~g~dg~~~~s~v~t~~~~~ 143 (400)
...|+|+-.|| ..|=|.+++.
T Consensus 83 T~K~L~~l~DG----~~IEtVli~~ 103 (371)
T PRK14461 83 TRKALFRLPDG----AVVETVLMIY 103 (371)
T ss_pred eEEEEEEcCCC----CEEEEEEEec
Confidence 45689999999 6777777774
Done!