RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10965
(400 letters)
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
golgi apparatus, membrane, signal-anchor, transmembrane;
HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
2alw_A* 2f18_A* ...
Length = 1045
Score = 317 bits (813), Expect = 1e-99
Identities = 100/412 (24%), Positives = 179/412 (43%), Gaps = 30/412 (7%)
Query: 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLG 60
F++ E S+F R++ + E + +K +V G+LEF+ GGW M DEA H+ +++ Q+T G
Sbjct: 126 FIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEG 185
Query: 61 LKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTM 120
+L P +W I PFGHS + GF + R + + + +
Sbjct: 186 QTWLKQFMNVT--PTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQL 243
Query: 121 EMVWRPDDTLGPEGDFFTGVM-YNIYDPPPGFCFD--------------TYCEDEPIMDN 165
E +WR + FT +M + YD P D +
Sbjct: 244 EFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPP 303
Query: 166 PKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAW---FKNIDKLIKY 222
+ NV AR D ++ KK A+ YRTN ++I +G DF + + W N ++L ++
Sbjct: 304 RTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEH 363
Query: 223 VNAKLNSDVHVLYSTPACYLQALNKENITWPSKM---DDDFFPFGSDEHSYWTGYFTSRP 279
+N++ + +V + T Y A+++ ++ DFF + +YW+GY+TSRP
Sbjct: 364 INSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRP 423
Query: 280 SFKYFVYQTNVALQMTKQLKTSLPNDTLAEEQFLIQRA---MGIAQHHDAVSGTERQHVT 336
K ++ + L D +A + +++A + + QHHD ++GT + HV
Sbjct: 424 YHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVV 483
Query: 337 NDYSLYLYEGIQAAMKIINVAYRHLLGD----YLPEQQPCLLMNVSQCELPS 384
DY + E ++A ++ + LL ++ S+
Sbjct: 484 VDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSG 535
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
c.6.2.1
Length = 298
Score = 272 bits (696), Expect = 1e-89
Identities = 118/227 (51%), Positives = 156/227 (68%), Gaps = 1/227 (0%)
Query: 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLG 60
F+YVE +FF RWW +Q + V+ELV QGRLEF GGW M+DEAT HY ++IDQMTLG
Sbjct: 67 FIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLG 126
Query: 61 LKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTM 120
L++L +TFG G+PRVAW IDPFGHS E A FA MGFDG FFGR+D++D +RKK M
Sbjct: 127 LRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVRKKTLQM 186
Query: 121 EMVWRPDDTLGPEG-DFFTGVMYNIYDPPPGFCFDTYCEDEPIMDNPKLHGVNVNARVDE 179
E VWR +L P D FT V+ N+Y+PP G C+D C D+P++++ + N V
Sbjct: 187 EQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNAKELVRY 246
Query: 180 FIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAK 226
F+++ + YRT + ++TMG DF Y A+ WFKN+DKLI+ VNA+
Sbjct: 247 FLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQ 293
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 209 bits (533), Expect = 2e-60
Identities = 55/403 (13%), Positives = 127/403 (31%), Gaps = 59/403 (14%)
Query: 1 FVYVE-TSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTL 59
+++ + + + + +++ + G+L + + D+ S + M +
Sbjct: 70 SFHLDGQTIILDDYLKVRPEREPEIRQAIASGKLRIG-PFYILQDDFLTSSESNVRNMLI 128
Query: 60 GLKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGR-------IDHEDIA 112
G + D +G + + D FG+ + G FGR + D +
Sbjct: 129 GKEDC-DRWG--ASVPLGYFPDTFGNMGQTPQLMLKAGLQAAAFGRGIRPTGFNNQVDTS 185
Query: 113 LRKKNKTMEMVWRPDDTLGPEG-DFFTGVMYNIYDPPPGFCFDTYCEDEPIMDNPKLHGV 171
+ ++ E+ W+ GP+ + N Y
Sbjct: 186 EKYSSQFSEISWQ-----GPDNSRILGLLFANWYSNGNEIPTTEA--------------- 225
Query: 172 NVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSDV 231
D+ + +++A T ++++ G D ++ K I N +L D
Sbjct: 226 EARLFWDKKLADAERFA---STKHLLMMNGCDHQP-----VQLDVTKAIALAN-QLYPDY 276
Query: 232 HVLYSTPACYLQALNKENITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNVA 291
++S YL L + S + + +D ++R K + +
Sbjct: 277 EFVHSCFEDYLADLADDLPENLSTVQGEITSQETDGWYTLANTASARIYLKQANTRVSRQ 336
Query: 292 LQMTKQLKTSL--------PNDTLAEEQFLIQRAMGIAQHHDAVSGTERQHVTNDYSLYL 343
L+ + ++ P+D L + + HD++ G V +
Sbjct: 337 LENITEPLAAMAYEVTSTYPHDQLRY----AWKTLMQNHPHDSICGCSVDSVHREMMTRF 392
Query: 344 YEGIQAAMKIINVAYRHLLG-----DYLPEQQPCLLMNVSQCE 381
+ + + A + + D+ + QP +L N S
Sbjct: 393 EKAYEVGHYLAKEAAKQIADAIDTRDFPMDSQPFVLFNTSGHS 435
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 205 bits (522), Expect = 4e-59
Identities = 51/377 (13%), Positives = 114/377 (30%), Gaps = 50/377 (13%)
Query: 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLG 60
F + + + + + +VK+ V G+L+ + + D+ S + M +G
Sbjct: 52 FHLDGQTIILDDYLQVRPEKKEAVKKAVQAGKLKIG-PFYILQDDFLISSESNVRNMLIG 110
Query: 61 LKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGR------IDHEDIALR 114
+ +G ++ + D FG+ + FGR D++ +
Sbjct: 111 -HLESQKWGAP--VQLGYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDNQVLESD 167
Query: 115 KKNKTMEMVWRPDDTLGPEGDFFTGVMYNIYDPPPGFCFDTYCEDEPIMDNPKLHGVNVN 174
++ EM W D + N
Sbjct: 168 YSSQYSEMWWEGPD----------QTKIFGLLFANWYS------------NGNEIPSEKE 205
Query: 175 ARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVL 234
A + + + + + TN++++ G D ++I K I N +L + +
Sbjct: 206 AAIAFWKQKLADVERYASTNHLLMMNGVDHQP-----VQRDITKAIALAN-ELFPEYEFI 259
Query: 235 YSTPACYLQALNKENITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNVALQM 294
+S YL+A+ +E + + +D ++R K + + L+
Sbjct: 260 HSNFDDYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSARVYLKQWNTKVQRQLEN 319
Query: 295 TKQLKTSL--------PNDTLAEEQFLIQRAMGIAQHHDAVSGTERQHVTNDYSLYLYEG 346
+ ++ P+D + + HD++ G V
Sbjct: 320 IAEPLAAMAYEVTGDYPHDQFDY----AWKTLLQNHPHDSICGCSVDEVHRGMMTRFENA 375
Query: 347 IQAAMKIINVAYRHLLG 363
+ + A R L
Sbjct: 376 NDVGHFLADEATRQLTE 392
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
a.8.3.1 c.6.2.1
Length = 84
Score = 104 bits (261), Expect = 6e-28
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 231 VHVLYSTPACYLQALNKENITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNV 290
V+VLYSTPACYL LNK N++W K DDFFP+ + +WTGYF+SRP+ K + +
Sbjct: 3 VNVLYSTPACYLWELNKANLSWSVK-KDDFFPYADGPYMFWTGYFSSRPALKRYERLSYN 61
Query: 291 ALQMTKQLKT 300
LQ+ QL+
Sbjct: 62 FLQVCNQLEA 71
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
a.8.3.1 b.30.5.6
Length = 159
Score = 72.8 bits (178), Expect = 1e-15
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 316 RAMGIAQHHDAVSGTERQHVTNDYSLYLYEGIQAAMKIINVAYRHLLGDYLPEQQPCLLM 375
AM + QHHDAVSGT RQHV NDY+ L EG + +++ A HL G + C +
Sbjct: 8 EAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGL-KEDFAFCRKL 66
Query: 376 NVSQCELPSPTINY-ITLYN 394
N+S C L + + +YN
Sbjct: 67 NISICPLTQTAERFQVIVYN 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 70/447 (15%), Positives = 124/447 (27%), Gaps = 152/447 (34%)
Query: 22 ASVKELV-DQGRLEFLLGGWCMSDEATPHYSSLIDQMTLGLKYLNDTFGECGQPRVAWQI 80
S + L G LE + + S L +Q L + F
Sbjct: 4 YSTRPLTLSHGSLEH---VLLVPTASFFIASQLQEQFNKILPEPTEGF---------AAD 51
Query: 81 DPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGV 140
D AE+ +F +G+ + +G F V
Sbjct: 52 DEPTTPAELVGKF--LGY-------VSSLV---------------EPSKVGQ----FDQV 83
Query: 141 MYNIYDPPPGFCFD-TYCEDEPIMDNPKLHGVNVNARVDEFI-----------EVVKKYA 188
+ F+ Y L G +++A + + E++K Y
Sbjct: 84 LNLCLT-----EFENCY-----------LEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 189 QAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKL--------NSDVHV-----LY 235
A + SA F+ + + NA+L N+D + LY
Sbjct: 128 TARIMAKRPFDKKSN------SALFRAVGE----GNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 236 STPACYLQALNK------ENITWPSKMDDDFFPFGSDEHSYW---------TGYFTSRP- 279
T + L K + + + F G + W Y S P
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSNTPDKDYLLSIPI 236
Query: 280 SFK---------YFVYQTNVAL---QMTKQLK--TSLPNDTLA---------EEQFL--I 314
S Y V + ++ LK T + E F +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 315 QRAMGIAQH-----HDAVSGTERQHVTNDYSLYLYEGIQAAMKIINVAYRHLLGDYLPEQ 369
++A+ + ++A T + SL EG+ + M ++ +L
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM----LSISNL-------T 345
Query: 370 QPCLLMNVSQC--ELPSPTINYITLYN 394
Q + V++ LP+ I+L N
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVN 372
Score = 42.7 bits (100), Expect = 2e-04
Identities = 37/235 (15%), Positives = 68/235 (28%), Gaps = 99/235 (42%)
Query: 44 DEATPHYSSLIDQMTLGLKYLNDTFGECGQPRV------------AWQIDP----F-GHS 86
E H +S + GL L+ T + QP + + + P F GHS
Sbjct: 1708 KEINEHSTSYTFRSEKGL--LSAT--QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 87 ----------AEVALEFADMGFDGVFF-GRIDHEDIALRKKNKTMEMVWRPDDTLGPEGD 135
A+V + + VF+ G + P D LG
Sbjct: 1764 LGEYAALASLADV-MSIES-LVEVVFYRGMTMQVAV--------------PRDELGRS-- 1805
Query: 136 FFTGVMYNIYDPPPGFCFDTYCED--EPIMDNPKLHGVNVNARVDEFIEVVKKYAQAYRT 193
Y + PG ++ ++ + +++ V R +E+V
Sbjct: 1806 -----NYGMIAINPGRVAASFSQEALQYVVER-------VGKRTGWLVEIV--------- 1844
Query: 194 N-N-----VIITMGGDFHYVVASAWFKNIDKLIKYVN---------AKLNSDVHV 233
N N + GD + +D + +N +L + +
Sbjct: 1845 NYNVENQQYVA--AGDL---------RALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 40.0 bits (93), Expect = 0.001
Identities = 58/402 (14%), Positives = 109/402 (27%), Gaps = 117/402 (29%)
Query: 48 PHYSSLIDQMTLGLKYLNDTFGECGQ--PRVAWQ------------IDPFGHSAEVAL-E 92
S+L + G L FG GQ ++ + + L E
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFG--GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 93 FADMGFDG-VFFGR-IDHEDIALRKKNKTMEMVW--RPDDTLGPEGDFFTGVMYNIYDPP 148
D F + ++ + W P +T P+ D+ + + P
Sbjct: 198 LIRTTLDAEKVFTQGLNILE-------------WLENPSNT--PDKDYLLSIPISC--PL 240
Query: 149 PGF----CFDTYCED---EPIMDNPKLHGVN------VNARV-------DEFIEVVKKYA 188
G + + P L G V A + F V+K
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 189 -----------QAYRTNNVIITMGGDFHY----------VVASAWFKNIDKLIKYVNAKL 227
+AY ++ ++ D +++ + + + N+ L
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 228 --NSDVHV-LYSTPACY--------LQALNK--ENITWPSKMDDDFFPFGSDEHSYWTGY 274
V + L + L LN PS +D PF S+ ++
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKLKFSNR 419
Query: 275 F--TSRPSF--KYFVYQTNVALQMTKQLKTSLPNDTLAEEQFLIQRA-MGIAQHHDAVSG 329
F + P F L L + D L + + I + G
Sbjct: 420 FLPVASP-FHSHL--------LVPASDL---INKD-LVKNNVSFNAKDIQIPVYD-TFDG 465
Query: 330 TERQHVTNDYSLYLYEGIQAA----MKIINVAYRHLLGDYLP 367
++ + ++ S + + I H+L D+ P
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL-DFGP 506
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP:
a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Length = 659
Score = 43.8 bits (103), Expect = 8e-05
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Query: 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLG 60
+ W EE ++ L+ +G+LE ++ G+ A + Q+ +
Sbjct: 46 VNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEML 105
Query: 61 LKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVF 102
Y G + W + E+ + G + V
Sbjct: 106 KDYA-RKLGY--DAKGVWLTERV-WQPELVKSLREAGIEYVV 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.002
Identities = 61/461 (13%), Positives = 125/461 (27%), Gaps = 128/461 (27%)
Query: 9 FWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEA----TPHYSSLIDQMTLGLKYL 64
FW +Q E V+ V+E V + +FL+ T Y D++
Sbjct: 68 FWTLLSKQEEMVQKFVEE-VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND---- 122
Query: 65 NDTFGECGQPR---------VAWQIDP-----------FGHS---AEVALEFA---DMGF 98
N F + R ++ P G + +V L + M F
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 99 DGVF---FGRIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGVMYNIYDPPPGFCFDT 155
+F + + +EM+ + + DP
Sbjct: 183 -KIFWLNLKNCNSPE-------TVLEMLQK---------------LLYQIDPN------- 212
Query: 156 YCEDEPIMDNPKLHGVNVNARVDEFIEVVKKYAQAY------RTNNVIITMGGDFH--YV 207
+ N KL ++ A + ++ K Y + + +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENCLLVLLNVQNAKAWNAF--NLSCKIL 269
Query: 208 VASAWFKNIDKLIKYVNAKLNSDVHVLYSTP----ACYLQALNKENITWPSKMDDDFFPF 263
+ + + + D L ++ D H + TP + L+ L+ P ++ P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPR 328
Query: 264 G--------SDEHSYWTGYFTSRPSFKYFVYQTNVALQMT-KQLKTS-----------LP 303
D + W + + ++ + L+ + P
Sbjct: 329 RLSIIAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 304 NDTLAEEQFLI--------QRAMGIAQHHDAVSGTERQHVTNDYSLY-LYEGIQAAMKII 354
L M + S E+Q + S+ +Y ++ +K+
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--LELKVKLE 440
Query: 355 NVAYRH--LLGDYLPEQQPCLLMNVSQCELPSPTINYITLY 393
N H ++ Y + S +P Y +
Sbjct: 441 NEYALHRSIVDHYNIPKTFD-----SDDLIPPYLDQYFYSH 476
Score = 34.4 bits (78), Expect = 0.064
Identities = 32/218 (14%), Positives = 65/218 (29%), Gaps = 65/218 (29%)
Query: 12 WWEEQNEQVRASVKELVDQGRLE--------FLLGGWC-----MSDEATPHYSSLIDQMT 58
W++ V V +L +E + + + +E H S++D
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYN 454
Query: 59 LGLKYLNDTFGECGQPRV----AWQIDPFGH------SAEVALEFADMGFDGVFFGR-ID 107
+ + +D P + I GH E F + D F + I
Sbjct: 455 IPKTFDSDDLIP---PYLDQYFYSHI---GHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 108 HEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGVMYNIY----DPPPGFCFDTYCEDEPIM 163
H+ A + +TL Y Y DP ++ I+
Sbjct: 509 HDSTAWNASGSIL-------NTL---QQL---KFYKPYICDNDPK----YERLVNA--IL 549
Query: 164 DNPKLHGVNVNARVDEFIEVVKK---------YAQAYR 192
D L + N ++ ++++ + +A++
Sbjct: 550 DF--LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.002
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 20/48 (41%)
Query: 331 ERQHVTNDYSLYLYEGIQAAMKIINVAYRHLLGDYLPEQQPCLLMNVS 378
E+Q + + +QA++K+ Y + P L + +
Sbjct: 18 EKQAL---------KKLQASLKL-----------YADDSAPALAIKAT 45
Score = 32.6 bits (73), Expect = 0.10
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 220 IKYVNAKLNSDVHVLY---STPACYLQA 244
+K KL + + LY S PA ++A
Sbjct: 22 LK----KLQASLK-LYADDSAPALAIKA 44
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga
maritima} SCOP: a.8.3.3 c.6.2.4
Length = 528
Score = 33.3 bits (75), Expect = 0.15
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 11 RWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHY----SSLIDQMTLGLKYLND 66
+ + + K+ + G+LE + P Y + Q+T+G+K
Sbjct: 115 NVFRSYDGNILEGFKKYQETGKLEIVTCNAT--HAFLPLYQMYPEVVNAQITVGVKNYEK 172
Query: 67 TFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVF 102
+ PR W + G+ + L A + F
Sbjct: 173 HMKK--HPRGIW-LAECGYYQGLDLYLAQNNVEYFF 205
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578,
structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella
pneumoniae subsp}
Length = 109
Score = 30.0 bits (68), Expect = 0.47
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 286 YQTNVALQMTKQLKTSLPNDTLAEE 310
YQ N + + K+L + P LAE+
Sbjct: 42 YQANGVMAVAKKLGMA-PRQ-LAEQ 64
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Length = 85
Score = 28.2 bits (63), Expect = 1.3
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 13 WEEQNEQVRASVKELVDQGRLEFLLGG 39
W E VR + L D G +E G
Sbjct: 39 WRPLMEPVREAAGRLADAGEVEVTQKG 65
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 28.7 bits (65), Expect = 2.9
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 141 MYNIYDPPPGFCFDTYCEDEPIMDNPK------LHGVNVNARVDEFIEVVKKYAQAYRTN 194
++ I P + Y EDE M+ + N ++ E E+ +
Sbjct: 110 LFEIVRNDPKIVTNVYREDEWYMNRHRPEEMRFFKEAVFNYKLYEPGELDPQ------GI 163
Query: 195 NVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYSTPACY 241
+ + D +++ L + +NA+ V+V +ST C
Sbjct: 164 SKVFFTCEDH---------EHLLPLEQAMNARWGDRVNVSFSTLTCL 201
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 28.9 bits (65), Expect = 3.9
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 286 YQTNVALQMTKQLKTSLPNDTLAEE 310
+ T +A ++ K LK P + +AE+
Sbjct: 41 FGTPIAFKLAKLLKRP-PIE-IAEK 63
>2kx2_A MTH1821, putative uncharacterized protein; structural genomics, U
function, structural genomics consortium, SGC; NMR
{Methanobacterium thermoautotrophicum}
Length = 96
Score = 27.0 bits (59), Expect = 4.3
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 244 ALNKENITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNV 290
+ ++ + ++FPFGS+E F +R + V+ ++V
Sbjct: 47 ERDDGDLIITVFYEREYFPFGSEESKVKMADFIAREEIEMMVFLSSV 93
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic
aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo
sapiens} PDB: 2xiq_A* 3bic_A
Length = 762
Score = 28.1 bits (63), Expect = 5.6
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 84 GHS--AEV-ALEFADMGFD 99
GH A+V A FAD+GFD
Sbjct: 616 GHDRGAKVIATGFADLGFD 634
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Length = 104
Score = 26.7 bits (59), Expect = 5.8
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 166 PKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDF 204
P + G++ A +D+ I ++ + G+F
Sbjct: 11 PLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFETVLEGEF 49
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 27.8 bits (61), Expect = 7.7
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 49 HYSSLIDQMTLGLKYLNDTFGECGQPRVAWQIDPFGHSAE----VALEFADMGFDGVFFG 104
+ + D + L + T P V W H A+ V D G+
Sbjct: 462 KDAPIQDWVKLAVNRARAT----NTPAVFWLDPARAHDAQVIAKVERYLKDYDTSGLDIR 517
Query: 105 RIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTGVMYNIY 145
+ + A R ++ + DT+ G+ + +++
Sbjct: 518 ILSPVE-ATRF---SLARIREGKDTISVTGNVLRDYLTDLF 554
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 8.0
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 7/26 (26%)
Query: 12 WWEEQNEQV-------RASVKELVDQ 30
W + Q+EQV R + K Q
Sbjct: 123 WNQRQSEQVEKNKINNRIADKAFYQQ 148
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 27.1 bits (61), Expect = 9.2
Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 150 GFCFDTYCEDEPIMDNPKLHG-VNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVV 208
F D N + + + + ++ ++ R + M D+
Sbjct: 105 RAHFQIETPDYIYTANKDISAYTIAESYLVRMLIQYREVSETPRDLTISKAMFVDYP--- 161
Query: 209 ASAWFKNIDKLIKYVNAKLNSDVHVLYSTPACYLQALNKE 248
+ I+++ + V+ S P +++ +N+
Sbjct: 162 -----QVIEQVKANMPQDFKDRFSVVQSAP-YFIEVMNRR 195
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 27.3 bits (61), Expect = 9.5
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 84 GHS--AEV-ALEFADMGFD 99
GH +V A +AD+GFD
Sbjct: 608 GHDRGQKVIATAYADLGFD 626
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 27.1 bits (61), Expect = 9.7
Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 150 GFCFDTYCEDEPIMDNPKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVA 209
TY E + +N ++ V + + K TN+ + + +
Sbjct: 106 HLSILTYDGAEIVTENS------LDPYVQKEAFLNKM--AIRETNDFLTDITLPVAKCLI 157
Query: 210 SAWFKNIDKLIKYVNAKLNSDVHVLYSTPACYLQALNKE 248
+ + + +L ++V S P +L+ + +
Sbjct: 158 VGDAGKLIPVESELCIRLQGKINVFRSEP-YFLELVPQG 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.436
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,479,840
Number of extensions: 397207
Number of successful extensions: 1133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1109
Number of HSP's successfully gapped: 40
Length of query: 400
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,021,377
Effective search space: 1222498608
Effective search space used: 1222498608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)