RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10965
(400 letters)
>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 330
Score = 269 bits (688), Expect = 2e-88
Identities = 140/267 (52%), Positives = 181/267 (67%), Gaps = 4/267 (1%)
Query: 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLG 60
F+YVE +FF RWW +Q + V+ELV QGRLEF GGW M+DEAT HY ++IDQMTLG
Sbjct: 66 FIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLG 125
Query: 61 LKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTM 120
L++L +TFG G+PRVAW IDPFGHS E A FA MGFDG FFGR+D++D +RKK M
Sbjct: 126 LRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVRKKTLQM 185
Query: 121 EMVWRPDDTLGP-EGDFFTGVMYNIYDPPPGFCFDTYCEDEPIMDNPKLHGVNVNARVDE 179
E VWR +L P D FT V+ N+Y+PP G C+D C D+P++++ + N V
Sbjct: 186 EQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNAKELVRY 245
Query: 180 FIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYSTPA 239
F+++ + YRT + ++TMG DF Y A+ WFKN+DKLI+ VNA V+VLYSTPA
Sbjct: 246 FLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNA--QIRVNVLYSTPA 303
Query: 240 CYLQALNKENITWPSKMDDDFFPFGSD 266
CYL LNK N++W K DDFFP+
Sbjct: 304 CYLWELNKANLSWSVK-KDDFFPYADG 329
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 381
Score = 253 bits (647), Expect = 9e-82
Identities = 71/288 (24%), Positives = 124/288 (43%), Gaps = 25/288 (8%)
Query: 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLG 60
F++ E S+F R++ + E + +K +V G+LEF+ GGW M DEA H+ +++ Q+T G
Sbjct: 96 FIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEG 155
Query: 61 LKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTM 120
+L P +W I PFGHS + GF + R + + + +
Sbjct: 156 QTWLKQFMNVT--PTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQL 213
Query: 121 EMVWRPDDTLGPEGDFFTGVMYNIYDPPPGFCFD---------------TYCEDEPIMDN 165
E +WR + FT +M P C +
Sbjct: 214 EFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPP 273
Query: 166 PKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAW---FKNIDKLIKY 222
+ NV AR D ++ KK A+ YRTN ++I +G DF + + W N ++L ++
Sbjct: 274 RTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEH 333
Query: 223 VNAKLNSDVHVLYSTPACYLQALNKE----NITWPSKMDDDFFPFGSD 266
+N++ + +V + T Y A+++ +P+ DFF +
Sbjct: 334 INSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTL-SGDFFTYADR 380
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Length = 310
Score = 95.9 bits (238), Expect = 6e-23
Identities = 38/302 (12%), Positives = 74/302 (24%), Gaps = 44/302 (14%)
Query: 1 FVYVETSFFWRWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLIDQMTLG 60
+ W EE ++ L+ +G+LE ++ G+ A + Q+ +
Sbjct: 46 VNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEML 105
Query: 61 LKYLNDTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTM 120
Y + W + E+ + G + V A K +
Sbjct: 106 KDYARKL---GYDAKGVWLTE-RVWQPELVKSLREAGIEYVVVDDYHFMS-AGLSKEELF 160
Query: 121 EMVWRPDDTLGPEGDFFTGVMYNIYDPPPGFCFDTYCEDEPIMDNPKLHGVNVNARVDEF 180
+ D + P V +
Sbjct: 161 WPYYTEDGGEVITVFPI---------------DEKLRYLIPFRP------------VKKT 193
Query: 181 IEVVKKYAQAYRTNNVIITMGG--DFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYSTP 238
IE ++ + + G + W ++ + S+ + T
Sbjct: 194 IEYLESLTSDDPSKVAVFHDDGEKFGVWPGTYEWV-YEKGWLREFFDAITSNEKINLMTY 252
Query: 239 ACYLQALNKENITWPSKMDDDFFPFGS-DEHSYWTGYFTSRPSFKYFVYQTNVALQMTKQ 297
+ YL + + P S E S W+ F FV Q + K
Sbjct: 253 SEYLSKFTPRGLVYL--------PIASYFEMSEWSLPAKQAKLFVEFVEQLKEEGKFEKY 304
Query: 298 LK 299
Sbjct: 305 RV 306
>g1o7d.1 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 95
Score = 89.3 bits (221), Expect = 1e-22
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 268 HSYWTGYFTSRPSFKYFVYQTNVALQMTKQLKTSLPNDTLAEEQFLIQRAMGIAQHHDAV 327
+ +WTGYF+SRP+ K + + LQ+ QL+ + + AM + QHHDAV
Sbjct: 1 YMFWTGYFSSRPALKRYERLSYNFLQVCNQLEALAGPAG---DSAPLNEAMAVLQHHDAV 57
Query: 328 SGTERQHVTNDYSLYLYEGIQAAMKIINVAYRHLLG 363
SGT RQHV NDY+ L EG + +++ A HL G
Sbjct: 58 SGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSG 93
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 111
Score = 85.1 bits (210), Expect = 7e-21
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 269 SYWTGYFTSRPSFKYFVYQTNVALQMTKQLKTSLPNDTLAEEQFLIQ---RAMGIAQHHD 325
+YW+GY+TSRP K ++ + L D +A + ++ R + + QHHD
Sbjct: 2 NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHD 61
Query: 326 AVSGTERQHVTNDYSLYLYEGIQAAMKIINVAYRHLL 362
++GT + HV DY + E ++A ++ + LL
Sbjct: 62 GITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL 98
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 412
Score = 36.2 bits (83), Expect = 0.006
Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 12 WWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEA-TPHYSSLIDQMTLGLKYLNDTFGE 70
++ + + A+ ++ + G++E + + +L Q+ G+ F +
Sbjct: 116 HFQRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAK 175
Query: 71 CGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGRIDH 108
P W + + + + G +D
Sbjct: 176 --DPTGFW-LPEMAYRPKGPWKPPVEGPPEGVRPGVDE 210
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
[TaxId: 2336]}
Length = 404
Score = 36.2 bits (83), Expect = 0.006
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 9/103 (8%)
Query: 11 RWWEEQNEQVRASVKELVDQGRLEFLLGGWCMSDEATPHYSSLID----QMTLGLKYLND 66
+ + + K+ + G+LE + + P Y + Q+T+G+K
Sbjct: 115 NVFRSYDGNILEGFKKYQETGKLEIVTCNATHA--FLPLYQMYPEVVNAQITVGVKNYEK 172
Query: 67 TFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGRIDHE 109
+ PR W + G+ + L A + F
Sbjct: 173 HMKK--HPRGIW-LAECGYYQGLDLYLAQNNVEYFFVDSHAFW 212
>d1j7na3 d.166.1.1 (A:264-550) Anthrax toxin lethal factor, middle
domain {Bacillus anthracis [TaxId: 1392]}
Length = 287
Score = 33.8 bits (77), Expect = 0.025
Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 32/164 (19%)
Query: 179 EFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWF--------KNIDKLI-KYVNAKLNS 229
EF++ +K Q Y N + GG + +NID L+ + + + L +
Sbjct: 111 EFLKKLKLDIQPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYN 170
Query: 230 DVHVLYSTPACYLQAL---NKENITWPSKMDDDFFPF------GSDEHSYWTGYFTSRPS 280
+++ + L A + + T +K++ F S +Y RP+
Sbjct: 171 KIYLYENMNINNLTATLGADLVDSTDNTKINRGIFNEFKKNFKYSISSNYMIVDINERPA 230
Query: 281 FKYFVYQTNVALQMTKQLKTSLPNDT----LAEEQFLIQRAMGI 320
+ + L DT L + ++QR +G+
Sbjct: 231 LD----------NERLKWRIQLSPDTRAGYLENGKLILQRNIGL 264
>d2iboa1 d.58.48.1 (A:1-90) Hypothetical protein SP2199
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 90
Score = 30.1 bits (68), Expect = 0.12
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 166 PKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASAWFKNIDKLIKYV 223
P + G++ A +D+ I ++ + G+F + + + + ++
Sbjct: 11 PLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFETVLEGEFDEL-----MRILKEALEVA 63
>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 29.7 bits (66), Expect = 0.25
Identities = 9/78 (11%), Positives = 27/78 (34%)
Query: 242 LQALNKENITWPSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNVALQMTKQLKTS 301
L + + + ++ G E++ + ++ + +A + + +S
Sbjct: 40 LAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASS 99
Query: 302 LPNDTLAEEQFLIQRAMG 319
P +LA + + G
Sbjct: 100 TPMGSLALSLYRLLLKQG 117
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 29.3 bits (65), Expect = 0.49
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 2 VYVETSFFWRWWEEQNEQVRASVKELVDQ-GRLEFL 36
VY+E R W +Q+ Q R + + +V+ G ++ L
Sbjct: 77 VYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQML 112
>d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458
{Rhodococcus sp. RHA1 [TaxId: 101510]}
Length = 85
Score = 27.4 bits (61), Expect = 0.93
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 13 WEEQNEQVRASVKELVDQGRLEFLLGG 39
W E VR + L D G +E G
Sbjct: 39 WRPLMEPVREAAGRLADAGEVEVTQKG 65
>d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD)
{Anabaena sp. [TaxId: 1167]}
Length = 111
Score = 27.7 bits (61), Expect = 1.2
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 213 FKNIDKLIKYVNAKL----NSDVHVLYSTPACYLQALNKENITWPSKMDDD-FFPFGSDE 267
F + ++ K N S L P LQ ++ N P E
Sbjct: 18 FGSFEEFKKQFNQAGGDRFGSGWVWLVRNPQGQLQVVSTPNQDNPIMEGSYPIMGNDVWE 77
Query: 268 HSYWTGYFTSRPSF 281
H+Y+ Y RP +
Sbjct: 78 HAYYLRYQNRRPEY 91
>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Length = 490
Score = 28.6 bits (63), Expect = 1.5
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 372 CLLMNVSQCELP-SPTINYITLYN 394
C +N+S C L + + +YN
Sbjct: 6 CRKLNISICPLTQTAERFQVIVYN 29
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 28.2 bits (62), Expect = 1.6
Identities = 16/137 (11%), Positives = 37/137 (27%), Gaps = 2/137 (1%)
Query: 193 TNNVIITMGGDFHYVVASAWFKNIDKLIKYVNAKLNSDVHVLYSTPACYLQALNKENITW 252
++ TM G W + + + + V ++ +
Sbjct: 38 NPFLLGTMAGGAAD--CQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGL 95
Query: 253 PSKMDDDFFPFGSDEHSYWTGYFTSRPSFKYFVYQTNVALQMTKQLKTSLPNDTLAEEQF 312
+ Y+ +R F + + ++ + +
Sbjct: 96 SMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALY 155
Query: 313 LIQRAMGIAQHHDAVSG 329
L +R++ A H DA SG
Sbjct: 156 LGKRSILAAAHRDAYSG 172
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 27.1 bits (59), Expect = 3.4
Identities = 18/151 (11%), Positives = 34/151 (22%), Gaps = 17/151 (11%)
Query: 66 DTFGECGQPRVAWQIDPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWR 125
F + V +DP ++ LRK
Sbjct: 114 RAFDDAEIIHVEGDVDPIRDL-----SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE 168
Query: 126 PDDTLGPEGDFFTGVMYNIYDPPPGFCFDTYCEDEPIMDNPKLHGVN---VNARVDE--- 179
+ Y P D + I+++ L + E
Sbjct: 169 MKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDF 228
Query: 180 ------FIEVVKKYAQAYRTNNVIITMGGDF 204
++ +KK+ + +I M F
Sbjct: 229 LRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 259
>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 118
Score = 25.8 bits (56), Expect = 4.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 2 VYVETSFFWRWWEEQNEQVRASVKELVDQ 30
V V R +E + + R ++ VD+
Sbjct: 75 VIVSGRLKQRSFETREGEKRTVIEVEVDE 103
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 26.2 bits (56), Expect = 5.6
Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 7/129 (5%)
Query: 80 IDPFGHSAEVALEFADMGFDGVFFGRIDHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTG 139
+D +GH +G RI R +
Sbjct: 22 VDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLD 81
Query: 140 VMYNIYDPPPGFCFDTYCEDEPIMDNPKLHGVNVNARVDEFIEVVKKYAQAYRTNNVIIT 199
V P G + C + V+ + +V+ + Q ++I+
Sbjct: 82 VYAAGEAPIVGADSKSLCRSIRNLGKVDPILVS---DTSQLGDVLDQIIQD---GDLILA 135
Query: 200 MG-GDFHYV 207
G G +
Sbjct: 136 QGAGSVSKI 144
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF
{Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 25.9 bits (57), Expect = 6.6
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 177 VDEFIEVVKKYAQAYRTNNVIITMGGDFHYVVA 209
+ + +T+++ + G +V
Sbjct: 20 IKSALAATDTSKVWTKTDHISTVLRGSIDHVFD 52
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large
subunit connection domain {Escherichia coli [TaxId:
562]}
Length = 153
Score = 25.8 bits (56), Expect = 7.2
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 84 GHSAEVALEFADMGFDGVFFGRI----DHEDIALRKKNKTMEMVWRPDDTLGPEGDFFTG 139
G +A+ + GF ++ + E LR + V++ DT E T
Sbjct: 81 GLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHP-VYKRVDTCAAEFATDTA 139
Query: 140 VMYNIYDPPPGFCFDTYCEDEP 161
MY+ Y + CE P
Sbjct: 140 YMYSTY--------EEECEANP 153
>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3 and
IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 24.8 bits (54), Expect = 8.1
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 337 NDYSLYL---YEGIQAAMKIINVA-YRHLLGDYLPEQQPCLL---MNVSQCELPS 384
NDY+ ++ + Q A +++NV R + D L E C L M S C P
Sbjct: 13 NDYTSHITCRWADTQDAQRLVNVTLIRRVNED-LLEPVSCDLSDDMPWSACPHPR 66
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 24.3 bits (53), Expect = 9.5
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 10 WRWWEEQNEQVRASVKELVDQGRLEFLLGG 39
W + +Q+ + L D+GRL+++ G
Sbjct: 40 WGYNRITLQQLEGYLNTLADEGRLKYIANG 69
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 302
Score = 25.7 bits (55), Expect = 9.9
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 153 FDTYCEDEPIMDNPKLHGVNVNARV-DEFIEVVKKYAQAYRTNNVIITMGGDFHYVVASA 211
+D LH + R IEVV A +++ +GGD ++ A+
Sbjct: 30 IALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAE 89
Query: 212 WFKNIDKLIKYVN 224
+N + VN
Sbjct: 90 LARNASIPVLGVN 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.436
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,607,664
Number of extensions: 77209
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 41
Length of query: 400
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,213,086
Effective search space: 379695918
Effective search space used: 379695918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)