BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10967
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolase
pdb|1F05|B Chain B, Crystal Structure Of Human Transaldolase
Length = 337
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 64/84 (76%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
+VANT K+Y P EDPGV SVTKIYNYYKKF YKT+VMGASFRNTGEI ALAGCD +TI
Sbjct: 197 HVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRNTGEIKALAGCDFLTIS 256
Query: 173 PKLLEELENSTTPVDQMLSEKSGK 196
PKLL EL + +LS K+ +
Sbjct: 257 PKLLGELLQDNAKLVPVLSAKAAQ 280
>pdb|2E1D|A Chain A, Crystal Structure Of Mouse Transaldolase
pdb|2E1D|B Chain B, Crystal Structure Of Mouse Transaldolase
Length = 331
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 64/84 (76%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
+VANT K+Y P DPGV SVTKIYNYYKKFGYKT+VMGASFRNTGEI ALAGCD +TI
Sbjct: 194 HVANTDKKSYEPQGDPGVKSVTKIYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTIS 253
Query: 173 PKLLEELENSTTPVDQMLSEKSGK 196
PKLL EL + + LS K+ +
Sbjct: 254 PKLLGELLKDNSKLAPALSVKAAQ 277
>pdb|2CWN|A Chain A, Crystal Structure Of Mouse Transaldolase
pdb|2CWN|B Chain B, Crystal Structure Of Mouse Transaldolase
Length = 332
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 64/84 (76%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
+VANT K+Y P DPGV SVTKIYNYYKKFGYKT+VMGASFRNTGEI ALAGCD +TI
Sbjct: 192 HVANTDKKSYEPQGDPGVKSVTKIYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTIS 251
Query: 173 PKLLEELENSTTPVDQMLSEKSGK 196
PKLL EL + + LS K+ +
Sbjct: 252 PKLLGELLKDNSKLAPALSVKAAQ 275
>pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
pdb|1I2Q|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
Length = 316
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 185 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 244
Query: 173 PKLLEELENSTTPVDQMLS 191
P LL+EL S +++ LS
Sbjct: 245 PALLKELAESEGAIERKLS 263
>pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
pdb|1I2P|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
Length = 316
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 185 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 244
Query: 173 PKLLEELENSTTPVDQMLS 191
P LL+EL S +++ LS
Sbjct: 245 PALLKELAESEGAIERKLS 263
>pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
pdb|1I2O|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
Length = 316
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 185 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 244
Query: 173 PKLLEELENSTTPVDQMLS 191
P LL+EL S +++ LS
Sbjct: 245 PALLKELAESEGAIERKLS 263
>pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
pdb|1I2N|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
Length = 316
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 185 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 244
Query: 173 PKLLEELENSTTPVDQMLS 191
P LL+EL S +++ LS
Sbjct: 245 PALLKELAESEGAIERKLS 263
>pdb|1ONR|A Chain A, Structure Of Transaldolase B
pdb|1ONR|B Chain B, Structure Of Transaldolase B
Length = 316
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 185 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 244
Query: 173 PKLLEELENSTTPVDQMLS 191
P LL+EL S +++ LS
Sbjct: 245 PALLKELAESEGAIERKLS 263
>pdb|1I2R|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
pdb|1I2R|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
Length = 316
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 185 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 244
Query: 173 PKLLEELENSTTPVDQMLS 191
P LL+EL S +++ LS
Sbjct: 245 PALLKELAESEGAIERKLS 263
>pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
pdb|1UCW|B Chain B, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
Length = 317
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 186 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 245
Query: 173 PKLLEELENSTTPVDQMLS 191
P LL+EL S +++ LS
Sbjct: 246 PALLKELAESEGAIERKLS 264
>pdb|3CWN|A Chain A, Escherichia Coli Transaldolase B Mutant F178y
pdb|3CWN|B Chain B, Escherichia Coli Transaldolase B Mutant F178y
Length = 337
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 206 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 265
Query: 173 PKLLEELENSTTPVDQMLS 191
P LL+EL S +++ LS
Sbjct: 266 PTLLKELAESEGAIERKLS 284
>pdb|3KOF|A Chain A, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
pdb|3KOF|B Chain B, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
Length = 337
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y ANT K YAP EDPGVVSV++IY YYK+ GY+TVVMGASFRN GEIL LAGCD +TI
Sbjct: 206 YKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIA 265
Query: 173 PKLLEELENSTTPVDQMLS 191
P LL+EL S +++ LS
Sbjct: 266 PTLLKELAESEGAIERKLS 284
>pdb|3M16|A Chain A, Structure Of A Transaldolase From Oleispira Antarctica
Length = 329
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 62/78 (79%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y AN+G Y+ +EDPGVVSVT+IYN+YK G+KT+V GASFRNTGEI LAGCD +TI
Sbjct: 194 YKANSGQSEYSASEDPGVVSVTEIYNFYKSHGFKTIVXGASFRNTGEIEELAGCDRLTIS 253
Query: 173 PKLLEELENSTTPVDQML 190
P+LL +LE T+P++Q L
Sbjct: 254 PELLAQLEADTSPLEQKL 271
>pdb|3HJZ|A Chain A, The Structure Of An Aldolase From Prochlorococcus Marinus
Length = 334
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 50/66 (75%)
Query: 115 ANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPK 174
A TG ++ EDPGV+SVT+IY Y+K+ G+KT V GASFRN EI LAGCDL+TI PK
Sbjct: 192 AKTGKTSFIGAEDPGVISVTQIYKYFKEKGFKTEVXGASFRNLDEIKELAGCDLLTIAPK 251
Query: 175 LLEELE 180
LEEL+
Sbjct: 252 FLEELK 257
>pdb|3CQ0|A Chain A, Crystal Structure Of Tal2_yeast
pdb|3CQ0|B Chain B, Crystal Structure Of Tal2_yeast
Length = 339
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 113 YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIG 172
Y A +G K Y DPGV+SV KIY+YYK+ GY T VM ASFRN E+ ALAG D MT+
Sbjct: 199 YKALSG-KDYTAETDPGVLSVKKIYSYYKRHGYATEVMAASFRNLDELKALAGIDNMTLP 257
Query: 173 PKLLEELENSTTPVDQMLSEKSGK 196
LLE+L ST P++ L+ +S K
Sbjct: 258 LNLLEQLYESTDPIENKLNSESAK 281
>pdb|3TK7|A Chain A, 2.0 Angstrom Resolution Crystal Structure Of Transaldolase
B (Tala) From Francisella Tularensis In Covalent Complex
With Fructose 6- Phosphate
pdb|3TK7|B Chain B, 2.0 Angstrom Resolution Crystal Structure Of Transaldolase
B (Tala) From Francisella Tularensis In Covalent Complex
With Fructose 6- Phosphate
pdb|3TNO|A Chain A, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3TNO|B Chain B, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3UPB|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis In Covalent Complex With
Arabinose-5-Phosphate
pdb|3UPB|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis In Covalent Complex With
Arabinose-5-Phosphate
pdb|4E0C|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis (Phosphate-Free)
pdb|4E0C|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis (Phosphate-Free)
Length = 345
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 120 KTY-APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEE 178
KT+ A +D GV SV IY YK G+KT+VMGASFRN +++ALAGCD +TI P LLEE
Sbjct: 220 KTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEE 279
Query: 179 LEN 181
L+N
Sbjct: 280 LKN 282
>pdb|3TE9|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TE9|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TKF|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate.
pdb|3TKF|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate
Length = 345
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 120 KTY-APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEE 178
KT+ A +D GV SV IY YK G+KT+VMGASFRN +++ALAGCD +TI P LLEE
Sbjct: 220 KTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEE 279
Query: 179 LEN 181
L+N
Sbjct: 280 LKN 282
>pdb|3IGX|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis.
pdb|3IGX|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis
Length = 324
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 120 KTY-APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEE 178
KT+ A +D GV SV IY YK G+KT+V GASFRN +++ALAGCD +TI P LLEE
Sbjct: 199 KTFPAIADDDGVNSVKAIYKLYKSHGFKTIVXGASFRNVEQVIALAGCDALTISPVLLEE 258
Query: 179 LEN 181
L+N
Sbjct: 259 LKN 261
>pdb|3GKH|A Chain A, Npc1(ntd)
pdb|3GKI|A Chain A, Npc1(Ntd):cholesterol
pdb|3GKJ|A Chain A, Npc1d(ntd):25hydroxycholesterol
Length = 232
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 28 GIFLGNDSEYSDERNLQDLKEKV-LQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKA 86
G F G S D R LQ LK+ + L LQ S + NL N + + S +
Sbjct: 45 GFFFGQVSLCCDVRQLQTLKDNLQLPLQFLSRCPS-CFYNLLNLFCELTCSPRQSQFLQV 103
Query: 87 TQTEDYLDVYNNNADGQDENAKHLVRYVANT 117
T TEDY+D N N K L YV +
Sbjct: 104 TATEDYVDPVTNQT---KTNVKELQYYVGQS 131
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 48 EKVLQLQRESEEKNKIIENLRNEINAIKQNRH-VSYATKATQTEDYLDVYNNNADGQDEN 106
E+V ++E K + E+++ I A+ Q+ H +S ++N + QDE
Sbjct: 107 EQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEHIHNGQKESQDEV 166
Query: 107 AKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY 145
AK++V +A Y + Y Y + F Y
Sbjct: 167 AKNIVAKIATIAAMAYRHNHGKKFLEPKMEYGYAENFLY 205
>pdb|3H4F|A Chain A, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|B Chain B, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|C Chain C, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
Length = 336
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHALAFNGTVPGPLMVVHQDDYLEL 80
>pdb|1ZDQ|A Chain A, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|B Chain B, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|C Chain C, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDS|A Chain A, Crystal Structure Of Met150gly Afnir With Acetamide
Bound
pdb|1ZDS|B Chain B, Crystal Structure Of Met150gly Afnir With Acetamide
Bound
pdb|1ZDS|C Chain C, Crystal Structure Of Met150gly Afnir With Acetamide
Bound
Length = 336
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|2FJS|A Chain A, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|B Chain B, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|C Chain C, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2E86|A Chain A, Azide Bound To Copper Containing Nitrite Reductase From
A. Faecalis S- 6
pdb|2E86|B Chain B, Azide Bound To Copper Containing Nitrite Reductase From
A. Faecalis S- 6
pdb|2E86|C Chain C, Azide Bound To Copper Containing Nitrite Reductase From
A. Faecalis S- 6
Length = 337
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|1L9P|A Chain A, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|B Chain B, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|C Chain C, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
Length = 341
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|3H4H|A Chain A, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|B Chain B, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|C Chain C, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 335
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 33 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 79
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|3H56|A Chain A, Met150leuPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 336
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 52 QLQRESEEKNKIIENLRNEINAIKQNRHVSY 82
+LQR S E N ++E +++ IK NR + Y
Sbjct: 47 ELQRLSHENNVMLEKIKDNKEKIKNNRQLPY 77
>pdb|1L9T|A Chain A, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|B Chain B, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|C Chain C, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|1L9Q|A Chain A, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|B Chain B, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|C Chain C, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|2B08|A Chain A, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|B Chain B, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|C Chain C, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
Length = 340
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 37 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 83
>pdb|1SJM|A Chain A, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|B Chain B, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|C Chain C, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SNR|A Chain A, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|B Chain B, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|C Chain C, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|2P80|A Chain A, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|B Chain B, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|C Chain C, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2PP7|A Chain A, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|B Chain B, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|C Chain C, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP8|A Chain A, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|B Chain B, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|C Chain C, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP9|A Chain A, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|B Chain B, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|C Chain C, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PPA|A Chain A, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|B Chain B, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|C Chain C, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPC|A Chain A, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|B Chain B, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|C Chain C, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
Length = 341
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|1L9R|A Chain A, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|B Chain B, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|C Chain C, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|1NPJ|A Chain A, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|B Chain B, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|C Chain C, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPN|A Chain A, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|B Chain B, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|C Chain C, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|2PPD|A Chain A, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|B Chain B, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|C Chain C, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPE|A Chain A, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|B Chain B, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|C Chain C, Reduced H145a Mutant Of Afnir Exposed To No
Length = 343
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 40 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 86
>pdb|1L9S|A Chain A, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|B Chain B, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|C Chain C, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|1L9O|A Chain A, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|B Chain B, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|C Chain C, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
Length = 341
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And
A Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And
A Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And
A Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
Length = 343
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 40 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 86
>pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|2PPF|A Chain A, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|B Chain B, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|C Chain C, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
Length = 341
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 34 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 80
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 132 SVTKIYNYYKKFGYKTVVMGA-SFR 155
S+ K+ NYY + GYK ++ A +FR
Sbjct: 121 SLAKMANYYAELGYKVLIAAADTFR 145
>pdb|1NTD|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Mutant M150e That Contains Zinc
Length = 343
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 49 KVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV 95
KV++ EEK +I++ E++A+ N V +DYL++
Sbjct: 40 KVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,767,458
Number of Sequences: 62578
Number of extensions: 243360
Number of successful extensions: 789
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 73
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)