Query psy10967
Match_columns 199
No_of_seqs 179 out of 1081
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 23:01:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00957 Transaldolase_TalAB Tr 100.0 3.5E-37 7.7E-42 276.2 12.5 128 68-195 135-266 (313)
2 TIGR00874 talAB transaldolase. 100.0 6.9E-37 1.5E-41 274.9 12.3 130 68-197 135-268 (317)
3 PTZ00411 transaldolase-like pr 100.0 7.4E-37 1.6E-41 276.2 12.4 154 43-197 115-281 (333)
4 PRK12346 transaldolase A; Prov 100.0 8.3E-37 1.8E-41 274.3 12.1 130 68-197 136-269 (316)
5 PRK12309 transaldolase/EF-hand 100.0 9.1E-36 2E-40 273.5 12.0 130 68-197 141-274 (391)
6 PRK05269 transaldolase B; Prov 100.0 2E-35 4.3E-40 265.2 12.2 128 68-195 137-268 (318)
7 TIGR00875 fsa_talC_mipB fructo 100.0 1.8E-32 3.9E-37 233.9 10.9 130 43-186 63-199 (213)
8 PRK01362 putative translaldola 100.0 9.6E-32 2.1E-36 229.8 10.8 131 42-186 62-199 (214)
9 PRK12656 fructose-6-phosphate 100.0 1.9E-31 4.1E-36 229.5 11.1 105 68-185 92-202 (222)
10 PRK12655 fructose-6-phosphate 100.0 2.9E-31 6.3E-36 227.8 11.0 106 68-186 90-201 (220)
11 PRK12653 fructose-6-phosphate 100.0 2.9E-31 6.2E-36 227.7 10.9 130 43-186 65-201 (220)
12 KOG2772|consensus 100.0 4.1E-31 9E-36 236.7 5.1 153 44-197 118-282 (337)
13 cd00956 Transaldolase_FSA Tran 100.0 8.7E-30 1.9E-34 216.0 10.3 130 42-186 62-199 (211)
14 cd00439 Transaldolase Transald 100.0 1.1E-29 2.3E-34 221.1 10.7 112 68-179 126-241 (252)
15 PRK12376 putative translaldola 99.9 5.8E-28 1.3E-32 209.6 10.1 99 69-181 100-208 (236)
16 PF00923 Transaldolase: Transa 99.9 2.5E-28 5.5E-33 214.1 6.6 117 68-185 118-238 (287)
17 TIGR02134 transald_staph trans 99.9 2E-27 4.4E-32 206.4 10.7 97 71-181 102-208 (236)
18 COG0176 MipB Transaldolase [Ca 99.9 4E-27 8.8E-32 205.2 9.1 106 68-186 102-214 (239)
19 PRK03903 transaldolase; Provis 99.8 7.3E-21 1.6E-25 168.7 10.2 115 68-184 84-222 (274)
20 PRK03343 transaldolase; Valida 99.8 1.1E-18 2.4E-23 160.1 7.9 125 68-194 145-316 (368)
21 cd00955 Transaldolase_like Tra 99.7 3.3E-18 7.3E-23 155.5 7.5 127 68-195 132-301 (338)
22 PRK09533 bifunctional transald 99.2 4E-11 8.7E-16 121.2 9.0 123 68-192 145-322 (948)
23 TIGR00876 tal_mycobact transal 97.9 2.7E-05 5.8E-10 72.0 6.2 123 68-190 135-304 (350)
24 PF01645 Glu_synthase: Conserv 95.5 0.049 1.1E-06 50.9 7.4 116 33-179 177-310 (368)
25 PTZ00314 inosine-5'-monophosph 95.4 0.053 1.2E-06 52.0 7.6 107 55-175 248-376 (495)
26 TIGR01302 IMP_dehydrog inosine 95.4 0.091 2E-06 49.5 8.9 102 69-186 251-369 (450)
27 COG1891 Uncharacterized protei 95.3 0.053 1.2E-06 47.4 6.4 91 71-175 42-154 (235)
28 PF04131 NanE: Putative N-acet 95.0 0.15 3.2E-06 44.2 8.3 95 65-175 79-176 (192)
29 cd02809 alpha_hydroxyacid_oxid 94.4 0.34 7.4E-06 42.9 9.5 80 86-180 181-264 (299)
30 TIGR03128 RuMP_HxlA 3-hexulose 94.1 0.17 3.8E-06 41.6 6.5 101 53-173 17-134 (206)
31 PRK05567 inosine 5'-monophosph 94.1 0.22 4.8E-06 47.3 7.9 101 70-186 256-373 (486)
32 PRK05848 nicotinate-nucleotide 94.0 0.37 8E-06 43.2 8.7 65 87-173 191-258 (273)
33 PRK07807 inosine 5-monophospha 93.3 0.49 1.1E-05 45.4 8.9 104 72-186 257-372 (479)
34 PRK01130 N-acetylmannosamine-6 93.3 0.27 5.8E-06 41.3 6.3 110 52-176 80-206 (221)
35 cd00381 IMPDH IMPDH: The catal 92.7 0.48 1E-05 43.0 7.4 112 52-177 98-231 (325)
36 cd04726 KGPDC_HPS 3-Keto-L-gul 92.6 1.1 2.3E-05 36.5 8.8 86 67-172 37-133 (202)
37 PRK06843 inosine 5-monophospha 92.6 0.65 1.4E-05 44.0 8.4 85 85-186 202-298 (404)
38 PRK07028 bifunctional hexulose 92.1 0.8 1.7E-05 42.6 8.4 110 43-173 12-139 (430)
39 TIGR01303 IMP_DH_rel_1 IMP deh 92.0 1.1 2.5E-05 42.9 9.5 93 86-187 275-371 (475)
40 cd04729 NanE N-acetylmannosami 91.9 0.75 1.6E-05 38.6 7.2 109 52-177 84-211 (219)
41 TIGR01182 eda Entner-Doudoroff 91.6 0.39 8.4E-06 41.5 5.3 93 52-173 25-129 (204)
42 PRK07428 nicotinate-nucleotide 91.4 1.5 3.2E-05 39.7 9.0 87 67-174 182-273 (288)
43 cd02811 IDI-2_FMN Isopentenyl- 91.2 0.84 1.8E-05 41.3 7.3 50 129-181 242-293 (326)
44 PRK07107 inosine 5-monophospha 90.8 1.9 4.1E-05 41.7 9.7 126 53-186 247-394 (502)
45 PLN02535 glycolate oxidase 90.7 1.8 3.9E-05 40.4 9.1 80 86-180 232-315 (364)
46 PRK05437 isopentenyl pyrophosp 90.4 1.4 3.1E-05 40.4 8.1 52 127-181 246-299 (352)
47 cd02808 GltS_FMN Glutamate syn 90.3 3 6.4E-05 38.8 10.1 53 127-179 264-321 (392)
48 PF01729 QRPTase_C: Quinolinat 89.0 2.9 6.3E-05 34.9 8.2 86 67-173 66-156 (169)
49 PRK07455 keto-hydroxyglutarate 88.2 1.1 2.4E-05 37.5 5.2 72 81-181 67-148 (187)
50 PRK06552 keto-hydroxyglutarate 88.1 1 2.2E-05 38.9 5.1 99 53-180 31-150 (213)
51 cd04729 NanE N-acetylmannosami 87.8 2.1 4.5E-05 36.0 6.7 69 85-171 79-149 (219)
52 cd02922 FCB2_FMN Flavocytochro 87.3 6.6 0.00014 36.2 10.2 82 87-181 223-309 (344)
53 PLN02274 inosine-5'-monophosph 87.2 3.1 6.7E-05 40.3 8.3 92 85-185 297-392 (505)
54 PRK05718 keto-hydroxyglutarate 86.9 1 2.3E-05 38.8 4.5 51 55-105 35-95 (212)
55 PRK09140 2-dehydro-3-deoxy-6-p 86.7 2.8 6E-05 35.8 7.0 103 51-181 26-146 (206)
56 TIGR03151 enACPred_II putative 86.4 4.3 9.4E-05 36.5 8.3 107 56-177 83-195 (307)
57 PF01070 FMN_dh: FMN-dependent 86.1 7.5 0.00016 36.0 9.9 76 89-180 237-317 (356)
58 PF04476 DUF556: Protein of un 85.5 3.3 7.2E-05 36.9 7.0 85 73-171 44-150 (235)
59 PRK06096 molybdenum transport 85.4 4.8 0.0001 36.5 8.1 66 87-173 198-265 (284)
60 PRK00507 deoxyribose-phosphate 85.4 4.6 0.0001 35.0 7.7 115 46-179 73-217 (221)
61 PRK00043 thiE thiamine-phospha 85.3 5.6 0.00012 32.4 7.9 77 89-177 115-193 (212)
62 TIGR02151 IPP_isom_2 isopenten 85.0 3.1 6.6E-05 37.8 6.7 91 89-180 194-291 (333)
63 PRK08385 nicotinate-nucleotide 84.5 6.1 0.00013 35.7 8.3 64 89-173 193-260 (278)
64 cd04726 KGPDC_HPS 3-Keto-L-gul 84.1 5 0.00011 32.6 7.0 87 73-176 95-190 (202)
65 COG0269 SgbH 3-hexulose-6-phos 83.8 8.3 0.00018 34.1 8.6 92 58-171 33-136 (217)
66 TIGR01306 GMP_reduct_2 guanosi 83.4 5.5 0.00012 36.7 7.7 92 86-187 146-241 (321)
67 cd00564 TMP_TenI Thiamine mono 82.3 10 0.00022 29.9 8.0 75 89-177 106-183 (196)
68 PRK00208 thiG thiazole synthas 82.1 10 0.00023 34.1 8.7 95 66-176 108-208 (250)
69 cd04737 LOX_like_FMN L-Lactate 81.9 13 0.00029 34.5 9.7 79 87-180 231-313 (351)
70 COG0069 GltB Glutamate synthas 81.8 7.3 0.00016 38.1 8.2 117 34-179 278-410 (485)
71 cd03332 LMO_FMN L-Lactate 2-mo 80.7 14 0.0003 34.9 9.4 80 86-180 262-345 (383)
72 cd04730 NPD_like 2-Nitropropan 80.5 10 0.00023 31.5 7.8 78 89-179 113-192 (236)
73 PRK05742 nicotinate-nucleotide 80.4 8.4 0.00018 34.7 7.6 81 68-173 177-262 (277)
74 PF01081 Aldolase: KDPG and KH 80.3 1.6 3.5E-05 37.5 2.9 99 53-180 26-143 (196)
75 PRK00278 trpC indole-3-glycero 79.9 11 0.00024 33.1 8.0 107 52-177 125-245 (260)
76 cd04727 pdxS PdxS is a subunit 79.7 11 0.00024 34.5 8.2 85 89-176 123-229 (283)
77 TIGR02814 pfaD_fam PfaD family 79.2 13 0.00027 36.0 8.8 89 73-176 159-257 (444)
78 TIGR01304 IMP_DH_rel_2 IMP deh 79.2 8.8 0.00019 36.0 7.6 92 81-179 188-291 (369)
79 PRK07896 nicotinate-nucleotide 78.9 12 0.00025 34.1 8.1 64 89-173 210-275 (289)
80 TIGR01334 modD putative molybd 78.6 13 0.00029 33.5 8.3 87 66-173 174-264 (277)
81 cd03174 DRE_TIM_metallolyase D 78.2 8.5 0.00018 32.4 6.6 133 34-172 7-166 (265)
82 PLN02979 glycolate oxidase 78.2 17 0.00037 34.3 9.2 79 87-180 233-315 (366)
83 COG3010 NanE Putative N-acetyl 78.2 8.6 0.00019 34.3 6.8 71 88-175 137-212 (229)
84 TIGR03128 RuMP_HxlA 3-hexulose 78.0 8.3 0.00018 31.7 6.4 106 52-177 68-191 (206)
85 COG0113 HemB Delta-aminolevuli 77.1 5.3 0.00011 37.3 5.4 66 89-175 154-256 (330)
86 PRK07695 transcriptional regul 76.9 15 0.00032 30.4 7.6 73 89-176 106-181 (201)
87 cd01568 QPRTase_NadC Quinolina 76.8 18 0.00039 32.0 8.5 64 87-172 190-255 (269)
88 cd04728 ThiG Thiazole synthase 75.7 17 0.00037 32.8 8.0 95 66-176 108-208 (248)
89 cd00452 KDPG_aldolase KDPG and 75.1 12 0.00027 30.8 6.6 72 87-180 106-179 (190)
90 cd00331 IGPS Indole-3-glycerol 75.1 14 0.0003 30.8 7.0 84 78-177 118-206 (217)
91 PRK08072 nicotinate-nucleotide 75.0 16 0.00035 32.9 7.8 82 67-173 174-261 (277)
92 cd00429 RPE Ribulose-5-phospha 75.0 20 0.00042 29.0 7.7 50 127-177 147-199 (211)
93 cd04738 DHOD_2_like Dihydrooro 75.0 14 0.0003 33.3 7.5 43 134-176 268-313 (327)
94 PRK04302 triosephosphate isome 74.9 18 0.00038 30.7 7.7 48 130-177 157-207 (223)
95 PRK05286 dihydroorotate dehydr 74.5 11 0.00024 34.4 6.7 42 135-176 278-322 (344)
96 cd01018 ZntC Metal binding pro 74.1 32 0.0007 29.8 9.3 66 91-173 181-248 (266)
97 cd07948 DRE_TIM_HCS Saccharomy 73.6 14 0.00031 32.5 7.1 121 46-172 21-161 (262)
98 TIGR01163 rpe ribulose-phospha 73.5 26 0.00057 28.4 8.1 95 72-176 95-197 (210)
99 TIGR00078 nadC nicotinate-nucl 72.4 24 0.00051 31.4 8.2 82 67-173 164-251 (265)
100 PRK07114 keto-hydroxyglutarate 71.7 3 6.6E-05 36.4 2.4 56 52-107 32-101 (222)
101 PLN02493 probable peroxisomal 70.7 38 0.00082 31.9 9.4 80 87-181 234-317 (367)
102 PRK01130 N-acetylmannosamine-6 70.3 18 0.00038 30.3 6.6 68 86-171 76-145 (221)
103 PRK04180 pyridoxal biosynthesi 70.3 26 0.00055 32.4 8.0 101 73-176 112-238 (293)
104 TIGR00343 pyridoxal 5'-phospha 70.0 31 0.00067 31.8 8.5 85 89-176 125-232 (287)
105 PRK09016 quinolinate phosphori 69.3 21 0.00046 32.7 7.3 61 89-173 219-281 (296)
106 PRK05458 guanosine 5'-monophos 69.1 12 0.00026 34.5 5.8 80 86-176 149-234 (326)
107 TIGR02708 L_lactate_ox L-lacta 69.1 44 0.00095 31.4 9.5 78 89-181 240-321 (367)
108 PRK08649 inosine 5-monophospha 68.9 22 0.00047 33.3 7.4 67 91-172 147-215 (368)
109 cd04824 eu_ALAD_PBGS_cysteine_ 68.2 7 0.00015 36.4 4.0 66 89-175 145-248 (320)
110 PRK05283 deoxyribose-phosphate 68.1 21 0.00045 32.1 6.9 110 46-170 82-227 (257)
111 TIGR01037 pyrD_sub1_fam dihydr 67.9 41 0.00088 29.5 8.6 30 147-176 236-267 (300)
112 TIGR00126 deoC deoxyribose-pho 67.8 18 0.0004 31.2 6.3 108 45-171 68-203 (211)
113 PRK06015 keto-hydroxyglutarate 67.6 4.8 0.0001 34.7 2.7 57 51-107 20-86 (201)
114 PRK08649 inosine 5-monophospha 67.2 37 0.0008 31.8 8.6 98 78-185 184-297 (368)
115 COG0745 OmpR Response regulato 66.8 15 0.00033 31.6 5.6 84 75-175 18-105 (229)
116 PLN02746 hydroxymethylglutaryl 66.8 21 0.00046 33.2 6.9 143 23-172 43-217 (347)
117 cd04740 DHOD_1B_like Dihydroor 66.6 59 0.0013 28.3 9.4 41 130-174 220-262 (296)
118 PRK11197 lldD L-lactate dehydr 65.8 47 0.001 31.4 9.1 81 86-181 254-338 (381)
119 PF02581 TMP-TENI: Thiamine mo 65.4 4.5 9.8E-05 33.0 2.0 28 146-173 94-123 (180)
120 cd00452 KDPG_aldolase KDPG and 65.0 33 0.00072 28.2 7.1 98 55-180 24-138 (190)
121 PRK06559 nicotinate-nucleotide 64.0 45 0.00098 30.5 8.3 61 89-173 208-270 (290)
122 PF01297 TroA: Periplasmic sol 63.9 58 0.0013 27.6 8.6 71 89-174 159-231 (256)
123 TIGR01305 GMP_reduct_1 guanosi 63.7 42 0.00091 31.6 8.2 87 86-186 159-254 (343)
124 cd01573 modD_like ModD; Quinol 63.4 56 0.0012 29.1 8.7 65 87-173 192-259 (272)
125 PRK09283 delta-aminolevulinic 63.0 8.8 0.00019 35.8 3.6 66 89-175 149-251 (323)
126 PRK09590 celB cellobiose phosp 62.9 13 0.00029 28.7 4.1 45 131-175 16-60 (104)
127 cd01017 AdcA Metal binding pro 62.5 79 0.0017 27.5 9.4 68 91-173 182-251 (282)
128 cd07945 DRE_TIM_CMS Leptospira 62.4 35 0.00075 30.4 7.2 121 46-172 18-167 (280)
129 PRK05718 keto-hydroxyglutarate 62.3 27 0.00058 30.2 6.3 65 127-195 51-121 (212)
130 cd01572 QPRTase Quinolinate ph 62.2 36 0.00078 30.3 7.2 60 89-172 193-254 (268)
131 cd00959 DeoC 2-deoxyribose-5-p 62.1 17 0.00036 30.5 4.9 86 65-169 101-200 (203)
132 PF03060 NMO: Nitronate monoox 62.1 31 0.00068 31.1 6.9 90 73-176 128-223 (330)
133 cd04742 NPD_FabD 2-Nitropropan 62.0 76 0.0016 30.5 9.8 89 73-176 154-252 (418)
134 PRK07114 keto-hydroxyglutarate 61.9 42 0.00091 29.4 7.5 68 127-194 51-124 (222)
135 cd04823 ALAD_PBGS_aspartate_ri 61.7 9.6 0.00021 35.5 3.6 66 89-175 146-248 (320)
136 PRK06978 nicotinate-nucleotide 61.3 49 0.0011 30.4 8.1 81 69-173 194-278 (294)
137 cd07939 DRE_TIM_NifV Streptomy 60.7 26 0.00056 30.3 6.0 122 45-172 18-159 (259)
138 COG0352 ThiE Thiamine monophos 60.6 20 0.00043 31.2 5.2 29 146-174 103-133 (211)
139 PRK13307 bifunctional formalde 60.3 64 0.0014 30.6 8.9 93 58-172 203-306 (391)
140 PRK11750 gltB glutamate syntha 60.2 47 0.001 36.8 8.8 77 94-179 1016-1103(1485)
141 COG1304 idi Isopentenyl diphos 59.8 9.8 0.00021 35.6 3.4 79 91-185 232-315 (360)
142 PRK13125 trpA tryptophan synth 59.7 50 0.0011 28.5 7.5 46 132-180 175-222 (244)
143 cd02067 B12-binding B12 bindin 59.5 72 0.0016 23.8 8.4 48 127-174 61-111 (119)
144 cd00384 ALAD_PBGS Porphobilino 58.4 13 0.00028 34.6 3.9 66 89-175 141-243 (314)
145 cd04736 MDH_FMN Mandelate dehy 57.8 91 0.002 29.3 9.4 81 86-181 245-327 (361)
146 PF09370 TIM-br_sig_trns: TIM- 57.4 15 0.00032 33.5 4.0 131 21-162 80-232 (268)
147 PRK13384 delta-aminolevulinic 56.9 14 0.00031 34.4 3.9 66 89-175 151-252 (322)
148 PRK06543 nicotinate-nucleotide 56.9 69 0.0015 29.1 8.2 61 89-173 204-266 (281)
149 PRK05826 pyruvate kinase; Prov 56.4 21 0.00045 34.5 5.0 21 92-112 180-201 (465)
150 cd00381 IMPDH IMPDH: The catal 56.2 84 0.0018 28.6 8.7 35 137-171 126-162 (325)
151 PLN02623 pyruvate kinase 56.1 20 0.00042 35.9 4.9 59 93-174 286-350 (581)
152 cd05565 PTS_IIB_lactose PTS_II 56.0 17 0.00037 28.0 3.6 45 129-175 13-57 (99)
153 PRK05581 ribulose-phosphate 3- 55.6 92 0.002 25.5 8.2 50 127-177 151-203 (220)
154 PRK06267 hypothetical protein; 55.6 57 0.0012 29.8 7.6 96 67-170 152-263 (350)
155 PF05690 ThiG: Thiazole biosyn 55.1 59 0.0013 29.4 7.3 91 63-175 109-207 (247)
156 CHL00200 trpA tryptophan synth 54.7 49 0.0011 29.5 6.8 51 131-181 188-240 (263)
157 PF00490 ALAD: Delta-aminolevu 54.6 17 0.00038 33.9 4.1 66 89-175 151-253 (324)
158 PRK00043 thiE thiamine-phospha 54.1 37 0.0008 27.6 5.5 25 148-172 105-131 (212)
159 PRK05096 guanosine 5'-monophos 54.0 57 0.0012 30.8 7.3 65 89-172 113-179 (346)
160 cd00958 DhnA Class I fructose- 53.9 29 0.00063 29.2 5.0 63 91-176 149-218 (235)
161 PRK11858 aksA trans-homoaconit 53.5 43 0.00092 31.0 6.4 133 33-172 13-165 (378)
162 PF14587 Glyco_hydr_30_2: O-Gl 53.3 14 0.00029 35.3 3.2 52 99-152 174-225 (384)
163 cd00003 PNPsynthase Pyridoxine 53.2 22 0.00048 31.8 4.3 115 56-180 98-219 (234)
164 PLN02591 tryptophan synthase 52.4 55 0.0012 29.0 6.7 51 131-181 175-227 (250)
165 COG3620 Predicted transcriptio 52.2 22 0.00047 30.8 4.0 52 89-155 20-71 (187)
166 TIGR00262 trpA tryptophan synt 52.1 53 0.0011 28.9 6.5 36 147-182 200-237 (256)
167 cd00331 IGPS Indole-3-glycerol 52.0 59 0.0013 27.0 6.6 73 89-180 35-114 (217)
168 TIGR00221 nagA N-acetylglucosa 51.9 25 0.00054 32.7 4.6 66 48-113 154-227 (380)
169 PRK08883 ribulose-phosphate 3- 51.4 47 0.001 28.7 6.0 49 128-177 149-200 (220)
170 PRK02615 thiamine-phosphate py 51.3 13 0.00029 34.5 2.8 28 146-173 239-268 (347)
171 PRK06843 inosine 5-monophospha 50.6 98 0.0021 29.6 8.4 64 90-172 157-222 (404)
172 cd02911 arch_FMN Archeal FMN-b 49.5 1.2E+02 0.0026 26.2 8.2 59 93-172 160-220 (233)
173 COG2108 Uncharacterized conser 49.3 15 0.00032 34.8 2.7 68 9-80 31-106 (353)
174 PRK08318 dihydropyrimidine deh 49.3 77 0.0017 29.4 7.4 39 133-171 239-281 (420)
175 PRK06106 nicotinate-nucleotide 49.3 1.1E+02 0.0024 27.9 8.2 62 88-173 204-267 (281)
176 PF00290 Trp_syntA: Tryptophan 49.2 68 0.0015 28.7 6.8 54 131-184 184-238 (259)
177 cd00288 Pyruvate_Kinase Pyruva 49.0 33 0.00072 33.3 5.1 20 93-112 182-202 (480)
178 TIGR00559 pdxJ pyridoxine 5'-p 48.8 28 0.00061 31.2 4.3 115 56-180 98-220 (237)
179 PRK03512 thiamine-phosphate py 48.8 16 0.00036 31.1 2.8 32 146-178 101-134 (211)
180 PRK11170 nagA N-acetylglucosam 48.8 29 0.00063 32.1 4.6 46 70-115 177-227 (382)
181 cd05564 PTS_IIB_chitobiose_lic 48.7 44 0.00096 25.0 4.8 43 132-176 15-57 (96)
182 PRK02227 hypothetical protein; 48.6 80 0.0017 28.3 7.1 69 89-171 71-150 (238)
183 PTZ00300 pyruvate kinase; Prov 47.4 32 0.0007 33.2 4.8 20 93-112 155-175 (454)
184 CHL00162 thiG thiamin biosynth 46.2 83 0.0018 28.8 6.9 91 70-176 126-222 (267)
185 PRK06552 keto-hydroxyglutarate 45.0 1.1E+02 0.0025 26.3 7.4 83 74-178 102-189 (213)
186 TIGR02090 LEU1_arch isopropylm 44.7 76 0.0016 29.2 6.6 132 34-172 10-161 (363)
187 PRK08999 hypothetical protein; 44.7 20 0.00044 31.3 2.8 29 146-174 225-255 (312)
188 PLN02334 ribulose-phosphate 3- 44.5 1E+02 0.0022 26.1 6.9 94 66-177 103-207 (229)
189 PRK07455 keto-hydroxyglutarate 44.4 53 0.0011 27.4 5.1 70 85-176 112-184 (187)
190 TIGR01859 fruc_bis_ald_ fructo 44.3 2.4E+02 0.0051 25.3 10.0 79 89-179 156-237 (282)
191 COG2070 Dioxygenases related t 44.1 54 0.0012 30.2 5.6 95 72-176 118-217 (336)
192 TIGR00853 pts-lac PTS system, 43.7 36 0.00077 25.7 3.6 43 132-176 19-61 (95)
193 TIGR00693 thiE thiamine-phosph 42.4 37 0.00079 27.5 3.8 26 146-171 95-122 (196)
194 PF09738 DUF2051: Double stran 42.4 50 0.0011 30.4 5.0 33 43-75 121-153 (302)
195 PRK07028 bifunctional hexulose 42.1 98 0.0021 28.8 7.0 72 89-177 122-195 (430)
196 TIGR00736 nifR3_rel_arch TIM-b 42.1 2.4E+02 0.0052 24.8 9.1 67 93-176 156-224 (231)
197 KOG2544|consensus 41.9 38 0.00082 34.0 4.3 86 26-111 435-544 (711)
198 COG0157 NadC Nicotinate-nucleo 41.8 1.7E+02 0.0037 26.9 8.3 77 73-172 177-262 (280)
199 cd01019 ZnuA Zinc binding prot 41.7 1.6E+02 0.0035 25.9 8.0 46 126-171 210-257 (286)
200 PRK09140 2-dehydro-3-deoxy-6-p 41.5 1.5E+02 0.0033 25.2 7.6 70 87-177 113-184 (206)
201 PRK07565 dihydroorotate dehydr 40.8 1.1E+02 0.0025 27.5 7.0 30 148-177 242-273 (334)
202 COG3883 Uncharacterized protei 40.7 59 0.0013 29.6 5.1 24 89-112 116-139 (265)
203 PRK13111 trpA tryptophan synth 40.7 98 0.0021 27.4 6.5 49 133-181 188-237 (258)
204 PF03740 PdxJ: Pyridoxal phosp 40.6 14 0.0003 33.1 1.1 114 57-180 100-222 (239)
205 PRK12724 flagellar biosynthesi 40.3 37 0.0008 32.8 4.0 48 25-72 48-99 (432)
206 PF13118 DUF3972: Protein of u 40.3 48 0.001 27.1 4.1 53 22-74 64-125 (126)
207 smart00052 EAL Putative diguan 39.4 2E+02 0.0043 23.1 7.7 90 66-169 131-228 (241)
208 COG0800 Eda 2-keto-3-deoxy-6-p 39.3 58 0.0013 28.7 4.7 90 71-165 52-149 (211)
209 PRK07226 fructose-bisphosphate 39.1 65 0.0014 28.1 5.1 63 91-177 166-236 (267)
210 cd01571 NAPRTase_B Nicotinate 39.1 2.4E+02 0.0052 25.5 8.8 75 89-175 199-276 (302)
211 TIGR00693 thiE thiamine-phosph 38.6 2.1E+02 0.0046 23.1 7.9 76 89-177 107-185 (196)
212 TIGR03151 enACPred_II putative 38.0 1.5E+02 0.0033 26.7 7.3 81 64-171 47-135 (307)
213 PF01884 PcrB: PcrB family; I 37.6 84 0.0018 27.9 5.5 41 138-178 175-217 (230)
214 PRK05265 pyridoxine 5'-phospha 37.5 58 0.0013 29.3 4.5 114 56-180 101-221 (239)
215 PLN02765 pyruvate kinase 36.6 76 0.0016 31.5 5.5 52 89-161 209-269 (526)
216 TIGR01949 AroFGH_arch predicte 36.4 71 0.0015 27.6 4.8 63 91-177 162-232 (258)
217 cd02812 PcrB_like PcrB_like pr 35.9 79 0.0017 27.7 5.0 47 128-177 161-209 (219)
218 PRK04169 geranylgeranylglycery 35.8 1E+02 0.0022 27.2 5.7 48 128-178 170-219 (232)
219 cd04739 DHOD_like Dihydroorota 35.6 2.7E+02 0.0058 25.2 8.6 30 148-177 240-271 (325)
220 PF07106 TBPIP: Tat binding pr 35.2 1.5E+02 0.0032 24.1 6.3 58 17-75 47-106 (169)
221 PF00834 Ribul_P_3_epim: Ribul 35.0 60 0.0013 27.7 4.1 50 128-177 148-199 (201)
222 PRK08091 ribulose-phosphate 3- 35.0 1.1E+02 0.0023 27.0 5.8 49 129-177 162-212 (228)
223 PRK00278 trpC indole-3-glycero 34.8 93 0.002 27.3 5.4 63 89-173 124-188 (260)
224 TIGR01304 IMP_DH_rel_2 IMP deh 34.7 1.7E+02 0.0037 27.5 7.4 68 89-172 146-216 (369)
225 cd07941 DRE_TIM_LeuA3 Desulfob 34.5 1.7E+02 0.0037 25.7 7.0 121 45-181 18-187 (273)
226 PRK09206 pyruvate kinase; Prov 33.9 79 0.0017 30.8 5.2 20 93-112 180-200 (470)
227 PRK06512 thiamine-phosphate py 33.7 39 0.00084 29.1 2.8 29 146-174 109-140 (221)
228 PRK05096 guanosine 5'-monophos 33.3 2.3E+02 0.0051 26.8 8.0 91 86-186 160-255 (346)
229 TIGR01769 GGGP geranylgeranylg 32.1 1E+02 0.0022 26.7 5.0 39 130-172 165-205 (205)
230 PRK11059 regulatory protein Cs 31.8 2.2E+02 0.0049 27.6 7.9 90 63-169 528-628 (640)
231 PLN02428 lipoic acid synthase 31.7 1.3E+02 0.0028 28.2 6.0 53 127-179 162-219 (349)
232 PRK05692 hydroxymethylglutaryl 31.6 1.2E+02 0.0026 27.1 5.6 134 33-172 13-175 (287)
233 cd02810 DHOD_DHPD_FMN Dihydroo 31.5 3.4E+02 0.0074 23.4 8.9 46 130-177 230-277 (289)
234 PRK06801 hypothetical protein; 31.4 2.1E+02 0.0045 25.9 7.1 128 33-179 104-240 (286)
235 PRK09722 allulose-6-phosphate 31.4 1.4E+02 0.003 26.2 5.9 49 129-177 152-203 (229)
236 PRK14057 epimerase; Provisiona 31.1 1.4E+02 0.003 26.8 5.9 50 128-177 175-226 (254)
237 PF12209 SAC3: Leucine permeas 30.9 84 0.0018 23.4 3.8 31 41-71 16-46 (79)
238 PRK10310 PTS system galactitol 30.7 48 0.001 24.8 2.5 46 132-179 19-64 (94)
239 PRK13361 molybdenum cofactor b 30.7 2.2E+02 0.0048 25.5 7.2 40 130-169 139-187 (329)
240 PF08776 VASP_tetra: VASP tetr 30.7 1.7E+02 0.0036 19.7 4.7 33 42-74 4-38 (40)
241 TIGR02660 nifV_homocitr homoci 30.6 1.3E+02 0.0029 27.6 5.8 122 45-172 21-162 (365)
242 cd07943 DRE_TIM_HOA 4-hydroxy- 30.6 1.6E+02 0.0034 25.5 6.1 43 130-172 111-161 (263)
243 cd01948 EAL EAL domain. This d 30.6 2.8E+02 0.0061 22.2 7.4 87 70-169 134-227 (240)
244 KOG4809|consensus 30.2 79 0.0017 32.0 4.5 46 39-84 336-389 (654)
245 TIGR01768 GGGP-family geranylg 30.1 1.3E+02 0.0029 26.4 5.5 46 130-178 167-214 (223)
246 PRK09856 fructoselysine 3-epim 29.8 1.2E+02 0.0025 25.7 5.0 49 91-151 19-67 (275)
247 TIGR00734 hisAF_rel hisA/hisF 29.6 1.4E+02 0.003 25.6 5.4 48 126-177 169-218 (221)
248 KOG2368|consensus 29.4 1.2E+02 0.0025 28.0 5.1 151 17-172 9-189 (316)
249 PF00218 IGPS: Indole-3-glycer 29.3 1.6E+02 0.0034 26.3 5.9 85 77-177 154-243 (254)
250 PF01791 DeoC: DeoC/LacD famil 29.3 1.3E+02 0.0029 25.4 5.3 70 91-176 152-234 (236)
251 PRK09389 (R)-citramalate synth 29.1 1.3E+02 0.0028 29.2 5.7 123 45-172 22-163 (488)
252 TIGR00007 phosphoribosylformim 29.0 2.2E+02 0.0047 23.7 6.4 50 129-182 60-117 (230)
253 cd00377 ICL_PEPM Members of th 28.9 3.9E+02 0.0084 23.2 8.4 47 134-180 186-234 (243)
254 PF00224 PK: Pyruvate kinase, 28.9 59 0.0013 29.9 3.3 57 93-172 184-246 (348)
255 TIGR03772 anch_rpt_subst ancho 28.6 5.6E+02 0.012 25.1 9.9 68 89-171 380-451 (479)
256 COG2513 PrpB PEP phosphonomuta 28.5 3E+02 0.0066 25.5 7.7 92 65-181 133-243 (289)
257 PF15573 Imm27: Immunity prote 28.3 60 0.0013 29.5 3.0 45 28-76 5-49 (259)
258 PRK07695 transcriptional regul 28.3 59 0.0013 26.8 2.9 27 147-173 95-123 (201)
259 PLN02898 HMP-P kinase/thiamin- 28.0 72 0.0016 30.3 3.8 28 146-173 389-418 (502)
260 PRK13585 1-(5-phosphoribosyl)- 28.0 1.8E+02 0.0038 24.5 5.8 43 130-176 65-109 (241)
261 cd00958 DhnA Class I fructose- 27.8 2.4E+02 0.0052 23.6 6.6 78 89-181 80-176 (235)
262 PRK08745 ribulose-phosphate 3- 27.8 2.1E+02 0.0045 24.9 6.3 49 129-177 154-204 (223)
263 TIGR01182 eda Entner-Doudoroff 27.5 1.9E+02 0.0042 24.9 6.0 64 127-194 44-113 (204)
264 cd02810 DHOD_DHPD_FMN Dihydroo 27.4 4E+02 0.0087 22.9 9.1 44 130-173 147-197 (289)
265 PLN02716 nicotinate-nucleotide 27.2 3.2E+02 0.0069 25.4 7.6 92 67-173 186-291 (308)
266 COG1533 SplB DNA repair photol 27.1 60 0.0013 29.5 3.0 41 67-107 168-221 (297)
267 COG1242 Predicted Fe-S oxidore 26.8 1.5E+02 0.0033 27.7 5.5 65 24-88 113-188 (312)
268 PRK05301 pyrroloquinoline quin 26.6 1.3E+02 0.0029 27.2 5.0 43 130-172 140-189 (378)
269 PF00563 EAL: EAL domain; Int 26.5 3.3E+02 0.0072 21.7 7.3 89 65-169 131-228 (236)
270 cd00952 CHBPH_aldolase Trans-o 26.4 1.1E+02 0.0024 27.4 4.5 20 89-108 94-116 (309)
271 PRK13753 dihydropteroate synth 26.3 1.3E+02 0.0028 27.3 4.9 78 26-104 4-102 (279)
272 PF10146 zf-C4H2: Zinc finger- 26.1 1.4E+02 0.0031 26.3 5.0 31 50-80 44-75 (230)
273 TIGR02666 moaA molybdenum cofa 26.1 3E+02 0.0066 24.4 7.2 33 129-161 137-172 (334)
274 cd04722 TIM_phosphate_binding 26.0 3E+02 0.0065 20.9 7.5 25 148-172 173-199 (200)
275 cd00314 plant_peroxidase_like 25.8 2.4E+02 0.0053 24.3 6.4 58 98-169 100-161 (255)
276 PF04131 NanE: Putative N-acet 25.7 1.8E+02 0.0039 25.4 5.5 95 81-196 47-160 (192)
277 PRK12370 invasion protein regu 25.7 71 0.0015 30.6 3.3 92 63-170 78-186 (553)
278 PRK11359 cyclic-di-GMP phospho 25.6 3.2E+02 0.0069 26.5 7.7 88 64-169 674-773 (799)
279 PRK07259 dihydroorotate dehydr 25.4 4.6E+02 0.01 22.9 9.5 43 129-175 222-266 (301)
280 PRK12344 putative alpha-isopro 25.3 1.4E+02 0.003 29.2 5.2 132 34-172 15-178 (524)
281 COG0159 TrpA Tryptophan syntha 25.2 3.4E+02 0.0073 24.7 7.3 59 125-184 185-245 (265)
282 PRK14831 undecaprenyl pyrophos 25.0 3.3E+02 0.0071 24.3 7.1 61 21-112 18-78 (249)
283 PRK11320 prpB 2-methylisocitra 24.9 4.8E+02 0.01 23.8 8.3 24 156-180 219-242 (292)
284 COG2022 ThiG Uncharacterized e 24.9 3.3E+02 0.0071 25.0 7.1 93 63-175 116-214 (262)
285 PLN02951 Molybderin biosynthes 24.8 3.3E+02 0.0071 25.2 7.3 35 128-162 182-219 (373)
286 PRK06354 pyruvate kinase; Prov 24.5 1.3E+02 0.0029 30.0 5.0 20 93-112 186-206 (590)
287 TIGR01919 hisA-trpF 1-(5-phosp 24.5 2.3E+02 0.0049 24.8 5.9 52 127-182 60-119 (243)
288 cd02940 DHPD_FMN Dihydropyrimi 24.4 3.9E+02 0.0085 23.6 7.5 44 130-175 239-284 (299)
289 TIGR00078 nadC nicotinate-nucl 24.3 1.3E+02 0.0029 26.7 4.6 45 137-181 168-217 (265)
290 KOG3990|consensus 24.3 79 0.0017 29.2 3.1 24 46-69 272-295 (305)
291 PF01261 AP_endonuc_2: Xylose 24.2 1E+02 0.0023 24.0 3.5 68 93-174 3-93 (213)
292 cd07940 DRE_TIM_IPMS 2-isoprop 24.2 2.5E+02 0.0055 24.3 6.2 122 46-172 19-163 (268)
293 PTZ00110 helicase; Provisional 23.9 3.5E+02 0.0076 26.2 7.6 109 74-182 142-270 (545)
294 PRK11840 bifunctional sulfur c 23.9 5.6E+02 0.012 24.1 8.6 94 67-176 183-282 (326)
295 PRK08072 nicotinate-nucleotide 23.8 2.3E+02 0.005 25.5 6.0 49 133-181 174-227 (277)
296 TIGR00222 panB 3-methyl-2-oxob 23.8 3.3E+02 0.0071 24.7 6.9 107 73-188 6-134 (263)
297 PTZ00066 pyruvate kinase; Prov 23.8 99 0.0021 30.6 3.9 53 89-162 212-272 (513)
298 PF08614 ATG16: Autophagy prot 23.7 1.8E+02 0.0038 24.3 5.0 33 43-75 125-157 (194)
299 PRK00915 2-isopropylmalate syn 23.6 2.2E+02 0.0047 27.7 6.2 132 34-172 14-169 (513)
300 PF05266 DUF724: Protein of un 23.6 1.6E+02 0.0036 25.1 4.8 37 40-76 130-173 (190)
301 cd07043 STAS_anti-anti-sigma_f 23.3 1.7E+02 0.0037 20.2 4.2 44 127-171 53-97 (99)
302 PF01397 Terpene_synth: Terpen 23.2 4.1E+02 0.0089 22.5 7.1 81 41-147 26-107 (183)
303 PRK11613 folP dihydropteroate 23.1 1.5E+02 0.0034 26.8 4.8 79 23-102 14-114 (282)
304 cd08213 RuBisCO_large_III Ribu 23.1 1.5E+02 0.0032 28.5 4.8 86 66-172 181-292 (412)
305 TIGR01089 fucI L-fucose isomer 22.9 99 0.0022 31.2 3.7 165 5-194 113-334 (587)
306 cd01568 QPRTase_NadC Quinolina 22.6 1.5E+02 0.0033 26.2 4.6 44 137-180 171-219 (269)
307 PRK10060 RNase II stability mo 22.5 3.6E+02 0.0077 26.5 7.5 100 63-180 536-654 (663)
308 COG0502 BioB Biotin synthase a 22.5 3.7E+02 0.008 25.3 7.2 83 18-105 63-161 (335)
309 KOG3313|consensus 22.5 1.1E+02 0.0024 26.7 3.5 85 12-99 94-186 (187)
310 COG1440 CelA Phosphotransferas 22.5 2.3E+02 0.005 22.5 5.0 43 131-175 16-58 (102)
311 PRK06739 pyruvate kinase; Vali 22.4 1.4E+02 0.0031 27.9 4.6 49 93-162 173-228 (352)
312 cd02071 MM_CoA_mut_B12_BD meth 22.4 3.6E+02 0.0077 20.6 8.6 87 56-169 11-106 (122)
313 cd00693 secretory_peroxidase H 22.3 2.2E+02 0.0048 25.9 5.6 88 60-169 75-169 (298)
314 PRK06256 biotin synthase; Vali 22.3 5.5E+02 0.012 22.7 8.8 101 67-174 186-302 (336)
315 PF14403 CP_ATPgrasp_2: Circul 22.1 2.2E+02 0.0047 27.7 5.8 72 65-150 141-219 (445)
316 PF13714 PEP_mutase: Phosphoen 22.1 1.3E+02 0.0028 26.4 4.0 91 64-180 119-227 (238)
317 cd04740 DHOD_1B_like Dihydroor 22.0 1.8E+02 0.0038 25.4 4.8 63 71-147 220-288 (296)
318 PRK10499 PTS system N,N'-diace 21.9 2.8E+02 0.006 21.2 5.4 50 129-180 15-65 (106)
319 COG1646 Predicted phosphate-bi 21.9 1.2E+02 0.0027 27.3 3.8 27 147-173 193-221 (240)
320 PF02310 B12-binding: B12 bind 21.9 2.1E+02 0.0046 20.9 4.6 46 127-172 62-111 (121)
321 PLN02389 biotin synthase 21.8 3.9E+02 0.0084 25.1 7.3 88 64-162 152-246 (379)
322 PRK04128 1-(5-phosphoribosyl)- 21.8 2.9E+02 0.0062 23.8 6.0 51 128-182 60-117 (228)
323 PRK00366 ispG 4-hydroxy-3-meth 21.7 1.6E+02 0.0035 28.0 4.7 118 29-165 20-151 (360)
324 cd00956 Transaldolase_FSA Tran 21.7 1.5E+02 0.0033 25.3 4.2 40 126-171 87-128 (211)
325 PRK12290 thiE thiamine-phospha 21.7 81 0.0018 30.6 2.8 28 146-173 299-328 (437)
326 PRK14024 phosphoribosyl isomer 21.5 2.3E+02 0.005 24.3 5.4 50 127-180 61-118 (241)
327 TIGR03249 KdgD 5-dehydro-4-deo 21.3 3E+02 0.0066 24.2 6.2 16 169-184 141-157 (296)
328 PF02302 PTS_IIB: PTS system, 21.2 1.1E+02 0.0024 21.5 2.8 45 134-181 18-64 (90)
329 PRK06015 keto-hydroxyglutarate 21.1 3.7E+02 0.0079 23.2 6.5 64 127-194 40-109 (201)
330 PLN02608 L-ascorbate peroxidas 21.1 2.6E+02 0.0057 25.6 5.8 57 96-168 105-161 (289)
331 TIGR01036 pyrD_sub2 dihydrooro 21.1 1.3E+02 0.0027 27.6 3.8 44 133-176 275-321 (335)
332 PRK06806 fructose-bisphosphate 21.1 6.1E+02 0.013 22.8 9.4 78 89-178 156-236 (281)
333 cd02803 OYE_like_FMN_family Ol 21.1 5.7E+02 0.012 22.4 9.7 77 93-176 236-315 (327)
334 PRK13585 1-(5-phosphoribosyl)- 21.1 2E+02 0.0044 24.1 4.9 47 128-178 180-228 (241)
335 COG0854 PdxJ Pyridoxal phospha 21.1 95 0.0021 28.1 2.9 111 57-178 100-221 (243)
336 PRK08318 dihydropyrimidine deh 20.9 1.9E+02 0.0041 26.8 5.0 63 71-146 239-310 (420)
337 PRK14829 undecaprenyl pyrophos 20.8 4.9E+02 0.011 23.1 7.3 42 18-67 9-50 (243)
338 PF10779 XhlA: Haemolysin XhlA 20.4 1.8E+02 0.004 20.6 3.8 46 43-88 15-60 (71)
339 PF01081 Aldolase: KDPG and KH 20.3 3.1E+02 0.0068 23.5 5.9 64 127-194 44-113 (196)
340 cd07947 DRE_TIM_Re_CS Clostrid 20.3 4.6E+02 0.01 23.4 7.2 122 45-172 19-170 (279)
341 PRK02506 dihydroorotate dehydr 20.1 1.7E+02 0.0037 26.3 4.5 63 71-147 228-299 (310)
342 PRK07259 dihydroorotate dehydr 20.0 2.1E+02 0.0045 25.2 4.8 63 71-147 223-291 (301)
No 1
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=100.00 E-value=3.5e-37 Score=276.19 Aligned_cols=128 Identities=47% Similarity=0.645 Sum_probs=122.9
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+||+|+++|+++||+|++|+ .|+++|+.|||+|||||||||+|||+++.|.+.+.+..|||+.+|++|+++|+++
T Consensus 135 ~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~ 214 (313)
T cd00957 135 WEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKF 214 (313)
T ss_pred HHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHc
Confidence 579999999999999999999 9999999999999999999999999998887778888899999999999999999
Q ss_pred CCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHhcCCCcccccCCcccc
Q psy10967 144 GYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSG 195 (199)
Q Consensus 144 gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~~~p~~ve~~L~~~~a 195 (199)
||+|+||||||||++||.+++|||.+||||+++++|.+++.+++++|++..+
T Consensus 215 ~~~T~vmaASfRn~~~v~~laG~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~ 266 (313)
T cd00957 215 GYKTKVMGASFRNIGQILALAGCDYLTISPALLEELKNSTAKVERKLDPAAS 266 (313)
T ss_pred CCCcEEEecccCCHHHHHHHhCCCeEEcCHHHHHHHHhCCCccccccCcccc
Confidence 9999999999999999999999999999999999999999999999998755
No 2
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=100.00 E-value=6.9e-37 Score=274.88 Aligned_cols=130 Identities=45% Similarity=0.593 Sum_probs=124.6
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+||+|+++|.++||+|++|+ .|+++|+.|||+|||||||||+|||+++.|.+.+.+..+||+.+|++|+++|+++
T Consensus 135 ~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~ 214 (317)
T TIGR00874 135 WEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKH 214 (317)
T ss_pred HHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHc
Confidence 689999999999999999999 9999999999999999999999999998776778888899999999999999999
Q ss_pred CCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHhcCCCcccccCCcccccC
Q psy10967 144 GYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSGKF 197 (199)
Q Consensus 144 gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~~~p~~ve~~L~~~~a~~ 197 (199)
||+|+||+|||||++||.+++|||.+||||+++++|.+++++++++|+|+.+..
T Consensus 215 g~~T~Im~ASfRn~~qv~~laG~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~ 268 (317)
T TIGR00874 215 GYPTEVMGASFRNKEEILALAGCDRLTISPALLDELKESTGPVERKLDPESAKK 268 (317)
T ss_pred CCCcEEEeeccCCHHHHHHHHCCCeEeCCHHHHHHHHhCCCCcCccCCcccccc
Confidence 999999999999999999999999999999999999999999999999988753
No 3
>PTZ00411 transaldolase-like protein; Provisional
Probab=100.00 E-value=7.4e-37 Score=276.22 Aligned_cols=154 Identities=40% Similarity=0.535 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHhHH-H-------HHHHHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhh
Q psy10967 43 LQDLKEKVLQLQRESEE-K-------NKIIENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHL 110 (199)
Q Consensus 43 ~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRId 110 (199)
-+..-++...|....++ | +||=-+ .+||+|+++|+++||+|++|+ .|+++|++|||+|||||||||+
T Consensus 115 ~e~~i~~A~~l~~l~~~~gi~~~rilIKIPaT-~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~ 193 (333)
T PTZ00411 115 KQAMVDKARKIIKMYEEAGISKDRILIKLAST-WEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPFVGRIL 193 (333)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCcEEEEeCCC-HHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEeecchHH
Confidence 34455555555554432 1 222223 689999999999999999999 9999999999999999999999
Q ss_pred hhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHhcCC-Cccccc
Q psy10967 111 VRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENST-TPVDQM 189 (199)
Q Consensus 111 Dwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~~~p-~~ve~~ 189 (199)
|||++..+.+.+.+..+||+++|++|+++|+++||+|+||||||||++||.+++|||.+||||+++++|.+|| .+++++
T Consensus 194 d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~lTi~p~ll~~L~~~~~~~~~~~ 273 (333)
T PTZ00411 194 DWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKLTISPKLLEELANTEDGPVERK 273 (333)
T ss_pred HhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEEeCCHHHHHHHHhCCCcccCcc
Confidence 9998876656667778999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCcccccC
Q psy10967 190 LSEKSGKF 197 (199)
Q Consensus 190 L~~~~a~~ 197 (199)
|+|..+..
T Consensus 274 l~~~~~~~ 281 (333)
T PTZ00411 274 LDPEKLTE 281 (333)
T ss_pred cCcccccc
Confidence 99877653
No 4
>PRK12346 transaldolase A; Provisional
Probab=100.00 E-value=8.3e-37 Score=274.34 Aligned_cols=130 Identities=38% Similarity=0.517 Sum_probs=123.7
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+||+|+++|+++||+|++|+ .|+++|+.|||+|||||||||+|||+++.+...+.+..+||+.+|++|+++|+++
T Consensus 136 ~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~ 215 (316)
T PRK12346 136 WEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQH 215 (316)
T ss_pred HHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHc
Confidence 578999999999999999999 9999999999999999999999999998776677778899999999999999999
Q ss_pred CCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHhcCCCcccccCCcccccC
Q psy10967 144 GYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSGKF 197 (199)
Q Consensus 144 gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~~~p~~ve~~L~~~~a~~ 197 (199)
||+|+||+|||||++||.+++|||.+||||+++++|.+++++++++|+|+.+..
T Consensus 216 ~~~T~Vm~ASfRn~~qi~alaG~d~lTi~p~ll~~L~~~~~~~~~~l~~~~~~~ 269 (316)
T PRK12346 216 RYETIVMGASFRRTEQILALAGCDRLTISPNLLKELQESESPVERKLIPSSQTF 269 (316)
T ss_pred CCCcEEEecccCCHHHHHHHhCCCEEeCCHHHHHHHHhcCCCcccccChhhhcc
Confidence 999999999999999999999999999999999999999999999999987653
No 5
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=100.00 E-value=9.1e-36 Score=273.54 Aligned_cols=130 Identities=42% Similarity=0.574 Sum_probs=124.4
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+||+|+++|+++||+|++|+ .||.+|++|||+|||||||||+|||+++.|.+.+.+.+|||+..|++|+++|+++
T Consensus 141 ~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~ 220 (391)
T PRK12309 141 WEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKF 220 (391)
T ss_pred HHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhc
Confidence 689999999999999999999 9999999999999999999999999998886667788999999999999999999
Q ss_pred CCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHhcCCCcccccCCcccccC
Q psy10967 144 GYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSGKF 197 (199)
Q Consensus 144 gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~~~p~~ve~~L~~~~a~~ 197 (199)
||+|+||+|||||++||.+++|||.+||||+++++|.+++.+++++|+|+.+..
T Consensus 221 ~~~T~Im~ASfRn~~~v~~laG~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~ 274 (391)
T PRK12309 221 GYKTEVMGASFRNIGEIIELAGCDLLTISPKLLEQLRSTEAELPRKLDPANAAG 274 (391)
T ss_pred CCCcEEEecccCCHHHHHHHHCCCeeeCCHHHHHHHHhcCCCcCcccChhhccc
Confidence 999999999999999999999999999999999999999999999999987653
No 6
>PRK05269 transaldolase B; Provisional
Probab=100.00 E-value=2e-35 Score=265.16 Aligned_cols=128 Identities=49% Similarity=0.640 Sum_probs=121.1
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+||+|+++|.++||+|++|+ .|+++|+.|||+|||||||||+|||+++.|...+.+..+||+.++++|+++|+++
T Consensus 137 ~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~ 216 (318)
T PRK05269 137 WEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKH 216 (318)
T ss_pred HHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHc
Confidence 689999999999999999999 9999999999999999999999999988765566667899999999999999999
Q ss_pred CCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHhcCCCcccccCCcccc
Q psy10967 144 GYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTPVDQMLSEKSG 195 (199)
Q Consensus 144 gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~~~p~~ve~~L~~~~a 195 (199)
|++|+||||||||++||.+++|||.+||||+++++|.++.++++++|++..+
T Consensus 217 ~~~t~im~ASfrn~~~v~~laG~d~vTi~p~ll~~l~~~~~~~~~~l~~~~~ 268 (318)
T PRK05269 217 GYKTVVMGASFRNTGQILELAGCDRLTISPALLEELAASEGELERKLSPPGE 268 (318)
T ss_pred CCCceEEeeccCCHHHHHHHhCCCeEECCHHHHHHHHhcCCCccccCCCccc
Confidence 9999999999999999999999999999999999999999999999997544
No 7
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=99.98 E-value=1.8e-32 Score=233.94 Aligned_cols=130 Identities=17% Similarity=0.198 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhccccc
Q psy10967 43 LQDLKEKVLQLQRESEEKNKI-IENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANT 117 (199)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~ 117 (199)
-+++-++..+|.+..+. +-| |---.+|++|||.|+++|++|++|+ .|+++|+.|||+|||||||||+||
T Consensus 63 ~~~mi~~a~~l~~~~~~-i~iKIP~T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~----- 136 (213)
T TIGR00875 63 AEGMVEEAKELAKLAPN-IVVKIPMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDI----- 136 (213)
T ss_pred HHHHHHHHHHHHHhCCC-eEEEeCCCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEeecchHHHc-----
Confidence 56666666666666542 211 2222489999999999999999999 999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 118 GTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 118 G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
| +||+++|++++++++++|++||||+|||||++||++ ++|||++|+||+++++|++||-+.
T Consensus 137 g--------~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~ 199 (213)
T TIGR00875 137 G--------GDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQLFNHPLTD 199 (213)
T ss_pred C--------CCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCchH
Confidence 6 799999999999999999999999999999999996 899999999999999999998653
No 8
>PRK01362 putative translaldolase; Provisional
Probab=99.97 E-value=9.6e-32 Score=229.80 Aligned_cols=131 Identities=19% Similarity=0.240 Sum_probs=113.2
Q ss_pred chHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccc
Q psy10967 42 NLQDLKEKVLQLQRESEEKNKI-IENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVAN 116 (199)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~ 116 (199)
+-+++-++...|.++.+. +-| |=--.+|++||+.|+++|++|++|+ .|+++|+.|||+|||||||||+||
T Consensus 62 d~~~m~~~a~~l~~~~~~-i~iKIP~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~---- 136 (214)
T PRK01362 62 DAEGMIKEGRELAKIAPN-VVVKIPMTPEGLKAVKALSKEGIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDI---- 136 (214)
T ss_pred CHHHHHHHHHHHHHhCCC-EEEEeCCCHHHHHHHHHHHHCCCceEEeeecCHHHHHHHHhcCCcEEEeecchHhhc----
Confidence 345666666666665532 111 1122379999999999999999999 999999999999999999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 117 TGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 117 ~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
| +||++++++++++++++|++|+||+|||||++||.+ ++|||++|+||+++++|++||-+.
T Consensus 137 -g--------~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~ 199 (214)
T PRK01362 137 -G--------TDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQLFKHPLTD 199 (214)
T ss_pred -C--------CCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCCchH
Confidence 6 899999999999999999999999999999999997 799999999999999999999654
No 9
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=99.97 E-value=1.9e-31 Score=229.51 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=100.8
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+|++|||+|+++||+|++|+ .|+++|+.+||+|||||||||+|. | .||+++|++|.+.|+++
T Consensus 92 ~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~-----g--------~D~~~~i~~i~~~~~~~ 158 (222)
T PRK12656 92 PAGLAAIKTLKAEGYHITATAIYTVFQGLLAIEAGADYLAPYYNRMENL-----N--------IDSNAVIGQLAEAIDRE 158 (222)
T ss_pred HHHHHHHHHHHHCCCceEEeeeCCHHHHHHHHHCCCCEEecccchhhhc-----C--------CCHHHHHHHHHHHHHhc
Confidence 569999999999999999999 999999999999999999999998 6 78999999999999999
Q ss_pred CCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCc
Q psy10967 144 GYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTP 185 (199)
Q Consensus 144 gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~ 185 (199)
+++||||+|||||++||.+ ++|||++|+||+++++|++||-+
T Consensus 159 ~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~t 202 (222)
T PRK12656 159 NSDSKILAASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPSI 202 (222)
T ss_pred CCCCEEEEEecCCHHHHHHHHHcCCCEEecCHHHHHHHhcCCcH
Confidence 9999999999999999996 68999999999999999999964
No 10
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=99.97 E-value=2.9e-31 Score=227.78 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=101.6
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+|++|||+|+++||+|++|+ .||++|+.|||+|||||||||+|. | .||++++++++++++.+
T Consensus 90 ~~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~-----g--------~dg~~~i~~~~~~~~~~ 156 (220)
T PRK12655 90 AEGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQ-----G--------GDGIRMVQELQTLLEMH 156 (220)
T ss_pred HHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHc-----C--------CCHHHHHHHHHHHHHhc
Confidence 489999999999999999999 999999999999999999999998 6 78999999999999999
Q ss_pred CCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 144 GYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 144 gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
+++||||+|||||++||.+ ++|||++|+||+++++|++||-+.
T Consensus 157 ~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~ 201 (220)
T PRK12655 157 APESMVLAASFKTPRQALDCLLAGCQSITLPLDVAQQMLNTPAVE 201 (220)
T ss_pred CCCcEEEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCChH
Confidence 9999999999999999997 899999999999999999999643
No 11
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=99.97 E-value=2.9e-31 Score=227.67 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhccccc
Q psy10967 43 LQDLKEKVLQLQRESEEKNKI-IENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANT 117 (199)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~ 117 (199)
.+++-++...|.+..+ ++-| |=-=.+|++|||.|+++||+|++|+ .|+++|+.|||+|||||||||+|+
T Consensus 65 ~e~mi~ea~~l~~~~~-ni~IKIP~T~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~----- 138 (220)
T PRK12653 65 AEGMVNDARKLRSIIA-DIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQ----- 138 (220)
T ss_pred HHHHHHHHHHHHHhCC-CEEEEeCCCHHHHHHHHHHHHcCCCeeEEEecCHHHHHHHHhcCCcEEEeecChHhhc-----
Confidence 4455555555554432 1111 1222569999999999999999999 999999999999999999999998
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 118 GTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 118 G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
| +||+++++++++++++++++|+||+|||||++||.+ ++|||++|+||+++++|++||-+.
T Consensus 139 g--------~dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~ 201 (220)
T PRK12653 139 G--------GSGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVD 201 (220)
T ss_pred C--------CChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCchH
Confidence 6 799999999999999999999999999999999997 899999999999999999999543
No 12
>KOG2772|consensus
Probab=99.96 E-value=4.1e-31 Score=236.69 Aligned_cols=153 Identities=42% Similarity=0.504 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHhH-HHH-------HHHHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhh
Q psy10967 44 QDLKEKVLQLQRESE-EKN-------KIIENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLV 111 (199)
Q Consensus 44 ~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdD 111 (199)
|-.-||++.|-+.-+ +|+ ||-. --+||+|+|.|..+||+++.|. .||..+++||++.||||||||+|
T Consensus 118 q~tvekA~~Likly~~~gv~k~rvliKI~s-TwegI~Aar~le~~GIhcnmTllFSfaQAVacAea~vtliSpFVgRi~d 196 (337)
T KOG2772|consen 118 QGTVEKARHLIKLYNEEGVPKERVLIKIAS-TWEGIQAARELEEEGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILD 196 (337)
T ss_pred hhHHHHHHHHHHHHHhcCCChheEEEeccc-ccchhHHHHHHHhcCceeeeeehHHHHHHHHHHhcCCeeehhHHHHHHH
Confidence 445566666655443 221 2222 2479999999999999999999 89999999999999999999999
Q ss_pred hcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHhcCCCcccccCC
Q psy10967 112 RYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTPVDQMLS 191 (199)
Q Consensus 112 wykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~~~p~~ve~~L~ 191 (199)
||+++.|.++|...+||||..|++||++|+++||+|+||+|||||.++|..++|||++||||.++++|.+++.+++..++
T Consensus 197 w~~~~t~~ka~~~~~dpgV~sv~~iYnyykKfgykt~Vm~asfrn~~eik~lag~D~ltisp~ll~~l~~s~~~~~~~l~ 276 (337)
T KOG2772|consen 197 WYKANTGQKAYKAREDPGVASVKKIYNYYKKFGYKTLVMAASFRNTGEIKNLAGVDYLTISPALLPQLVNSTEDQPLELS 276 (337)
T ss_pred HHHhccCchhccccCCchHHHHHHHHHHHHHhhHHHHHHHHHhhchhhhhhcccCceeeecHHHHHHHhhCCCccchhhh
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q psy10967 192 EKSGKF 197 (199)
Q Consensus 192 ~~~a~~ 197 (199)
+..|+.
T Consensus 277 a~~ak~ 282 (337)
T KOG2772|consen 277 ASHAKL 282 (337)
T ss_pred hhhhhc
Confidence 887764
No 13
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=99.96 E-value=8.7e-30 Score=216.03 Aligned_cols=130 Identities=20% Similarity=0.299 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhccc
Q psy10967 42 NLQDLKEKVLQLQRESEEKNKII--ENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVA 115 (199)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk 115 (199)
+.+++.+....|.... |+.+| -.=.+|++|||+|+++|++|++|+ .|+++|+.|||+|||||||||+||
T Consensus 62 ~~e~~i~~a~~l~~~~--~~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~--- 136 (211)
T cd00956 62 DAEGMVAEARKLASLG--GNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDL--- 136 (211)
T ss_pred CHHHHHHHHHHHHHhC--CCEEEEEcCcHhHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhc---
Confidence 3445555555554432 23222 112289999999999999999999 999999999999999999999999
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 116 NTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 116 ~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
| +||++++++++++++++|++||||+|||||+.||.+ ++|||++|+||+|+++|++||-+.
T Consensus 137 --g--------~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~ 199 (211)
T cd00956 137 --G--------GDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTD 199 (211)
T ss_pred --C--------CCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHH
Confidence 6 799999999999999999999999999999999996 799999999999999999998654
No 14
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=99.96 E-value=1.1e-29 Score=221.10 Aligned_cols=112 Identities=22% Similarity=0.127 Sum_probs=104.2
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+|++|||+|+++||+|++|+ .|+++|+.|||+|||||||||+||+.++.+.....+..+||++.+++++++|+++
T Consensus 126 ~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~ 205 (252)
T cd00439 126 AEGIPAIKDLIAAGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQK 205 (252)
T ss_pred HHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHh
Confidence 479999999999999999999 9999999999999999999999998766554444455679999999999999999
Q ss_pred CCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHH
Q psy10967 144 GYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 179 (199)
Q Consensus 144 gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL 179 (199)
+++|+||+|||||++||.+++|||.+|+||+++.+|
T Consensus 206 ~~~tkiL~AS~r~~~~v~~l~G~d~vT~~p~v~~~l 241 (252)
T cd00439 206 FKKQRVLWASFSDTLYVAPLIGCDTVTTMPDQALEA 241 (252)
T ss_pred CCCCeEEEEeeCCHHHHHHhhCCCeeecCHHHHHHH
Confidence 999999999999999999999999999999999998
No 15
>PRK12376 putative translaldolase; Provisional
Probab=99.95 E-value=5.8e-28 Score=209.63 Aligned_cols=99 Identities=19% Similarity=0.140 Sum_probs=91.9
Q ss_pred HHHHHHHhhhhcCcccccch----hhhH--HHHHc--CCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHH
Q psy10967 69 NEINAIKQNRHVSYATKATQ----TEDY--LDVYN--NNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYY 140 (199)
Q Consensus 69 ~~l~aik~l~~~~~~~~aTa----~Qa~--LA~~a--gA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~y 140 (199)
.|++|||+|+++||+|++|+ .|++ +++.+ ||+|||||||||+|+ | .||+.+|+++.++|
T Consensus 100 ~gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvgR~dd~-----g--------~D~~~~i~~i~~i~ 166 (236)
T PRK12376 100 STIPLIKKLSADGVKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIADT-----G--------VDPVPLMKEALAIC 166 (236)
T ss_pred hHHHHHHHHHHCCCeEEEeeecCHHHHHHHHHHhcCCCCeEEEEecchhhhc-----C--------CCcHHHHHHHHHHH
Confidence 56999999999999999999 9998 44545 599999999999998 6 78999999999999
Q ss_pred HhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhc
Q psy10967 141 KKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 141 k~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~ 181 (199)
+++ ++||||||||||++||.+ ++|||++|+||+++++|++
T Consensus 167 ~~~-~~tkILaASiR~~~~v~~a~~~Gad~vTvp~~v~~~l~~ 208 (236)
T PRK12376 167 HSK-PGVELLWASPREVYNIIQADQLGCDIITVTPDVLKKLPL 208 (236)
T ss_pred HhC-CCcEEEEEecCCHHHHHHHHHcCCCEEEcCHHHHHHHHh
Confidence 986 899999999999999996 7999999999999999996
No 16
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=99.95 E-value=2.5e-28 Score=214.12 Aligned_cols=117 Identities=32% Similarity=0.409 Sum_probs=103.9
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
..||+|++.|+++||+|++|+ .|+++|+.||++|||||||||+||+++..+ .......+||++++++++++|+++
T Consensus 118 ~~Gi~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~AGa~~isp~vgRld~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~ 196 (287)
T PF00923_consen 118 EEGIKAIKELEAEGIPVNATLVFSVEQAIAAAQAGASYISPYVGRLDDWGKRLQG-EDALKGEHDGVALAKEIYQYYRKY 196 (287)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-SHHHHHHHHHTT-SEEEEBHHHHHHHHHHHSC-CHHCGGGSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCceEEEEecccHHHHHHHHhcccceEeeeHHHHHHHhhhhcc-cccccccccHHHHHHHHHHHHHHh
Confidence 679999999999999999999 999999999999999999999999844333 122223479999999999999999
Q ss_pred CCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHhcCCCc
Q psy10967 144 GYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTTP 185 (199)
Q Consensus 144 gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~~~p~~ 185 (199)
+++|+||+|||||++||.+++|||.+|+||+++++|++|+.+
T Consensus 197 ~~~t~v~~as~r~~~~v~~l~G~d~vTip~~~l~~l~~~~~~ 238 (287)
T PF00923_consen 197 GYKTKVLAASFRNVQQVLALAGADIVTIPPKVLEALLEHPLT 238 (287)
T ss_dssp TESSEEEEBSSSSHHHHHHTTTSSEEEEEHHHHHHHHHHHHH
T ss_pred CCCcceeccCcCCHHHHHHHHCCCeEECCHHHHHHHHhCCCh
Confidence 999999999999999999999999999999999999999876
No 17
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=99.94 E-value=2e-27 Score=206.43 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=91.8
Q ss_pred HHHHHhhhhcCcccccch----hhhHHHHH---cC-CcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHh
Q psy10967 71 INAIKQNRHVSYATKATQ----TEDYLDVY---NN-NADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKK 142 (199)
Q Consensus 71 l~aik~l~~~~~~~~aTa----~Qa~LA~~---ag-A~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~ 142 (199)
++|||+|+++||+|++|+ .|+++|+. +| |+||||||||++|+ | .||+.+|+++.++|++
T Consensus 102 l~ai~~L~~~GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yispfvgR~dd~-----g--------~D~~~~i~~i~~i~~~ 168 (236)
T TIGR02134 102 GPLIQKLSADGITLNVTALTTIEQVEKVCQSFTDGVPGIVSVFAGRIADT-----G--------VDPEPHMREALEIVAQ 168 (236)
T ss_pred HHHHHHHHHCCCcEEeehcCCHHHHHHHHHHHhCCCCeEEEEecchhhhc-----C--------CCcHHHHHHHHHHHHh
Confidence 999999999999999999 99999655 89 69999999999999 6 7899999999999999
Q ss_pred cCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhc
Q psy10967 143 FGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 143 ~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~ 181 (199)
+ ++||||+|||||++||.+ ++|||++|+||+|+++|+.
T Consensus 169 ~-~~tkILaAS~R~~~~v~~a~~~Gad~vTvp~~v~~~l~~ 208 (236)
T TIGR02134 169 K-PGVELLWASPRELFNIIQADRIGCDIITCAHDILAKLPL 208 (236)
T ss_pred C-CCcEEEEEccCCHHHHHHHHHcCCCEEECCHHHHHHHHh
Confidence 8 799999999999999996 7999999999999999974
No 18
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4e-27 Score=205.21 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=92.6
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+||+|||+|++|||+|++|+ .||++|++|||+|||||||||+||+ .||...|.++.++|+.|
T Consensus 102 ~eGl~Ai~~L~~eGI~~NvTLiFS~~QAl~aa~aga~~iSpFvgRi~D~~-------------~d~~~~I~~~~~iy~~y 168 (239)
T COG0176 102 WEGLKAIKALEAEGIKTNVTLIFSAAQALLAAEAGATYISPFVGRIDDWG-------------IDGMLGIAEAREIYDYY 168 (239)
T ss_pred HHHHHHHHHHHHCCCeeeEEEEecHHHHHHHHHhCCeEEEeecchHHhhc-------------cCchHHHHHHHHHHHHh
Confidence 458999999999999999999 9999999999999999999999994 45666666666666666
Q ss_pred CCc-eEEEEcccCCHhhHH--HHhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 144 GYK-TVVMGASFRNTGEIL--ALAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 144 gyk-TkILAASFRNv~QV~--aLAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
+.. +++++||+|++.|+. +++|||.+|+||+++++|.+|.+.+
T Consensus 169 ~~~~~~t~vas~~~~~~~~~~~l~G~d~~Tip~~~l~~l~~~~~~~ 214 (239)
T COG0176 169 KQHGAKTLVASARFPNHVYIAALAGADVLTIPPDLLKQLLKHGGAM 214 (239)
T ss_pred ccccceEEEecCccHHHHHHHHHhCCCcccCCHHHHHHHHhccccc
Confidence 666 888999999998888 4999999999999999999996643
No 19
>PRK03903 transaldolase; Provisional
Probab=99.84 E-value=7.3e-21 Score=168.67 Aligned_cols=115 Identities=12% Similarity=0.041 Sum_probs=97.6
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHH---HcCCcc--------cccchhhhhhhcccccCCCCCCCCCCChHHH
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDV---YNNNAD--------GQDENAKHLVRYVANTGTKTYAPTEDPGVVS 132 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~---~agA~Y--------ISPFVGRIdDwykk~~G~~~~~~~~ddGV~v 132 (199)
.+|++||++|.++||+|++|+ .|+++++ .+|++| +||||||||+|...+.+..++. .+.|+..
T Consensus 84 ~~Gl~Ai~~L~~~GI~vn~TliFS~~Qa~~~a~A~~~Ga~~~~~~~~sviS~fVgRiD~~~d~~l~~~~l~--~~~gIa~ 161 (274)
T PRK03903 84 KAGYEAMSALMKKGISVNATLIFSPEQAKECAEALNEGLKKNTKDPKAVISVFVSRFDRLLDPKLAPKNLQ--AKSGIMN 161 (274)
T ss_pred HHHHHHHHHHHHCCCcEEEeeecCHHHHHHHHHHHHcCcccccccCCceeeeecchHhhhccccccccccc--ccHHHHH
Confidence 489999999999999999999 8999954 459876 9999999999954433211221 3679999
Q ss_pred HHHHHHHHHhcC-CceEEEEcc--cCC----HhhHHH--HhCCCEEeeCHHHHHHHhcCCC
Q psy10967 133 VTKIYNYYKKFG-YKTVVMGAS--FRN----TGEILA--LAGCDLMTIGPKLLEELENSTT 184 (199)
Q Consensus 133 Vk~I~~~yk~~g-ykTkILAAS--FRN----v~QV~a--LAGaDaVTIpP~VLeqL~~~p~ 184 (199)
+++++++|+.+| .+|++|+|| ||| ..|+.+ ++|+++.|+||++++++.+|..
T Consensus 162 a~~~y~~~~~~g~~~~riL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl~a~~~hg~ 222 (274)
T PRK03903 162 ATKCYNQIEQHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTIEAFLKDGN 222 (274)
T ss_pred HHHHHHHHHHcCCCCcEEEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHHHHHHhcCC
Confidence 999999999995 579999999 799 999996 7999999999999999999844
No 20
>PRK03343 transaldolase; Validated
Probab=99.76 E-value=1.1e-18 Score=160.08 Aligned_cols=125 Identities=13% Similarity=0.070 Sum_probs=104.2
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHc-----------CC------cccccchhhhhhhccc----ccCCCCC
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYN-----------NN------ADGQDENAKHLVRYVA----NTGTKTY 122 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~a-----------gA------~YISPFVGRIdDwykk----~~G~~~~ 122 (199)
.+|++||++|.++||+|++|+ .|+..+++| |. .++||||||+ ||+.+ ..|....
T Consensus 145 ~~Gi~Ai~~L~~~GI~vn~TliFS~~Qa~a~~eA~~~Gl~~~~~~G~~~~~~~sviS~FVsRi-D~~~d~~l~~~~~~~~ 223 (368)
T PRK03343 145 PEGLPAIEALIAEGISVNVTLIFSVERYRAVADAYLRGLEKRLAAGHDLSKIHSVASFFVSRV-DTEVDKRLEAIGTDEA 223 (368)
T ss_pred HHHHHHHHHHHHCCCceeEeeecCHHHHHHHHHHHHHHHHHHHHcCCCcccCCeEEEeehhhh-HhhhhhhhhhcCcchh
Confidence 489999999999999999999 777777777 88 7999999999 66544 2221110
Q ss_pred C-CCCCChHHHHHHHHHHHHhcC----C----------------ceEEEEcccCCHhhHHHHhCCCEE-eeCHHHHHHHh
Q psy10967 123 A-PTEDPGVVSVTKIYNYYKKFG----Y----------------KTVVMGASFRNTGEILALAGCDLM-TIGPKLLEELE 180 (199)
Q Consensus 123 ~-~~~ddGV~vVk~I~~~yk~~g----y----------------kTkILAASFRNv~QV~aLAGaDaV-TIpP~VLeqL~ 180 (199)
. ...++||..++.+|++|++++ | +|-||++|||++.+|.+|+|||.| |+||+.++++.
T Consensus 224 ~~l~g~~gVa~ak~~Y~~~~~~~~~~~~~~l~~~ga~~qr~LwAsT~vk~~~~~~~~yV~~L~G~dtvnT~p~~tl~a~~ 303 (368)
T PRK03343 224 LALRGKAAIANARLAYQAYEEVFASPRWAALAAAGARPQRPLWASTGTKNPAYSDTLYVDELVAPDTVNTMPEATLDAFA 303 (368)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCcchhHHHHhcCCcccccceeccccCCCccCccccHHHccCCCccCCCCHHHHHHHH
Confidence 1 245899999999999999988 7 999999999999999999999999 99999999998
Q ss_pred cCCCcccccCCccc
Q psy10967 181 NSTTPVDQMLSEKS 194 (199)
Q Consensus 181 ~~p~~ve~~L~~~~ 194 (199)
+|. ++.++|++..
T Consensus 304 ~~g-~~~~~l~~~~ 316 (368)
T PRK03343 304 DHG-EVADTLTGDY 316 (368)
T ss_pred hcC-CccccCCCch
Confidence 654 4458887654
No 21
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=99.74 E-value=3.3e-18 Score=155.47 Aligned_cols=127 Identities=12% Similarity=-0.008 Sum_probs=108.9
Q ss_pred HHHHHHHHhhhhcCcccccch----hhhHHHHHcCC-----------------cccccchhhhhhhcccccCCC--CCCC
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----TEDYLDVYNNN-----------------ADGQDENAKHLVRYVANTGTK--TYAP 124 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA-----------------~YISPFVGRIdDwykk~~G~~--~~~~ 124 (199)
.+|++||++|.++||+|++|+ .|+..|+.|.. ..+||||||+ ||+.+....+ ....
T Consensus 132 ~~Gi~Ai~~L~~~GI~vn~TliFs~~Qa~~aa~A~~~Gl~~~~~~g~~~~~~~sv~S~FVsRi-D~~~d~~l~~~~~~~~ 210 (338)
T cd00955 132 EAGLPAIEELIAAGISVNVTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQVASVASFFVSRV-DTLIDKKLDAPEAKAL 210 (338)
T ss_pred HHHHHHHHHHHHCCCceeEeeecCHHHHHHHHHHHHhhHHHHHhcCCCcccCceEEEEecchh-hHhhhccccccccccc
Confidence 789999999999999999999 99999999954 8999999999 5543332211 1233
Q ss_pred CCCChHHHHHHHHHHHHhcCC--------------------ceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHhcCCC
Q psy10967 125 TEDPGVVSVTKIYNYYKKFGY--------------------KTVVMGASFRNTGEILALAGCDLMTIGPKLLEELENSTT 184 (199)
Q Consensus 125 ~~ddGV~vVk~I~~~yk~~gy--------------------kTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~~~p~ 184 (199)
..++||..++.+|++|+++++ +|.|+++|||++.+|.+|+|||.||..|....+++...+
T Consensus 211 ~g~~gIa~ak~~Y~~~~~~~~~~~~~~l~~~ga~~qr~LwASTgvk~~~~~~~~yV~~LiG~dtvnt~P~~t~~a~~~~g 290 (338)
T cd00955 211 QGKVAIANAKLAYQEYQEKFSGPRWAALAAAGAKPQRLLWASTGVKNPAYPDVLYVEELIGPDTVNTMPDATLKAFADHG 290 (338)
T ss_pred ccCHHHHHHHHHHHHHHHHCCchhhHHHHhcCCcccccceecccccCCccCCcccHHhccCCCcccCCHHHHHHHHHhcC
Confidence 568999999999999999998 899999999999999999999999999998888888888
Q ss_pred cccccCCcccc
Q psy10967 185 PVDQMLSEKSG 195 (199)
Q Consensus 185 ~ve~~L~~~~a 195 (199)
++.++|++...
T Consensus 291 ~~~~~l~~~~~ 301 (338)
T cd00955 291 EVRPTLEEGLE 301 (338)
T ss_pred CccccCCCchh
Confidence 88888887643
No 22
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=99.20 E-value=4e-11 Score=121.17 Aligned_cols=123 Identities=20% Similarity=0.174 Sum_probs=100.4
Q ss_pred HHHHHHHHhhhhcCcccccch----------hhhHHHH-----HcC------CcccccchhhhhhhcccccCCCCCCCC-
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----------TEDYLDV-----YNN------NADGQDENAKHLVRYVANTGTKTYAPT- 125 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----------~Qa~LA~-----~ag------A~YISPFVGRIdDwykk~~G~~~~~~~- 125 (199)
.+||+||++|.++||+|++|+ .|||++. .+| ++|+||||||+|+|++++-... +...
T Consensus 145 ~~Gl~Ai~~L~~~GI~vn~TliFS~~q~~~~~~A~~~gle~~~~aG~d~~~i~sv~S~fvsRiD~~~d~~l~~~-~~~~~ 223 (948)
T PRK09533 145 PEGLPAIRQLIAEGINVNVTLLFSQDVYEEVAEAYISGLEARAAKGGDPSHVASVASFFVSRIDSAVDKRLDEK-IAAAN 223 (948)
T ss_pred HHHHHHHHHHHHCCCeeeEEEEecHHHHHHHHHHHHHHHHHHHhcCCCcccCceEEEEehhhHHHHHHhhhhhh-ccccC
Confidence 589999999999999999998 7888877 489 9999999999999987765422 1111
Q ss_pred ------------CCChHHHHHHHHHHHH------------hcCCc-eEEEEcc-------cCCHhhHHHHhCCCE-EeeC
Q psy10967 126 ------------EDPGVVSVTKIYNYYK------------KFGYK-TVVMGAS-------FRNTGEILALAGCDL-MTIG 172 (199)
Q Consensus 126 ------------~ddGV~vVk~I~~~yk------------~~gyk-TkILAAS-------FRNv~QV~aLAGaDa-VTIp 172 (199)
..-|+...+.+|+.|+ ..|.+ .+.|=|| ++++..|.+|.|.|. -|+|
T Consensus 224 dp~~~~~~~~l~gk~~ianAk~ay~~~~~~~~~~rw~~l~~~ga~~qR~LwASTg~K~p~~~d~~Yv~~Lig~~tVnT~P 303 (948)
T PRK09533 224 DPAEKAALEALKGKVAIANAKLAYQRYKRLFAGPRWEALAAKGAKPQRLLWASTGTKNKAYSDVLYVEELIGPDTVNTMP 303 (948)
T ss_pred CcchhhhhhhhccHHHHHHHHHHHHHHHHHhcchhHHHHHhCCCCcceeEEeecCCCCcccCCcccHHHhcCcCcccCCC
Confidence 1347778889999876 57776 8999999 888889999999987 7999
Q ss_pred HHHHHHHhcCCCcccccCCc
Q psy10967 173 PKLLEELENSTTPVDQMLSE 192 (199)
Q Consensus 173 P~VLeqL~~~p~~ve~~L~~ 192 (199)
|+.++...+|.. +.+.++.
T Consensus 304 ~~tl~A~~~hg~-~~~~~~~ 322 (948)
T PRK09533 304 PATLDAFRDHGK-VRATLEE 322 (948)
T ss_pred HHHHHHHHhcCC-ccccCCC
Confidence 999999999976 4455543
No 23
>TIGR00876 tal_mycobact transaldolase, mycobacterial type. This model describes one of three related but easily separable famiiles of known and putative transaldolases. This family and the family typified by E. coli TalA and TalB both contain experimentally verified examples.
Probab=97.87 E-value=2.7e-05 Score=72.03 Aligned_cols=123 Identities=12% Similarity=-0.006 Sum_probs=79.4
Q ss_pred HHHHHHHHhhhhcCcccccch----------hhhHHH-----HHcCC------cccccchhhhhhhcccccCCCCCC---
Q psy10967 68 RNEINAIKQNRHVSYATKATQ----------TEDYLD-----VYNNN------ADGQDENAKHLVRYVANTGTKTYA--- 123 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~aTa----------~Qa~LA-----~~agA------~YISPFVGRIdDwykk~~G~~~~~--- 123 (199)
.+||+||++|.++||+|++|+ .+||+. ..+|- +++|.||||+|.+..+.-......
T Consensus 135 ~~Gi~Ai~~L~~~GI~vNvTliFS~~q~~~v~eA~~~Gl~~~~~~G~~~~~v~sVaS~FvsRvD~~vD~~l~~~~~~~a~ 214 (350)
T TIGR00876 135 EAGIEAISALLAAGIPVNVTLIFSPKIAGEIADALAKEAEKARQAGHSLSKIHAVASFFVSRFDKEIDKLLDKIGSRQAL 214 (350)
T ss_pred HHHHHHHHHHHHCCCceeEEEeecHHHHHHHHHHHHHHHHHHHHcCCCcccCceEEEEeeehhhhhhhhhhhhccchhHH
Confidence 789999999999999999999 444442 23443 699999999999864431100000
Q ss_pred -CCCCChHHHHHHHHHHHH-------------hcCC-ceEEEEcc--cCCH-----hhHHHHhCCCE-EeeCHHHHHHHh
Q psy10967 124 -PTEDPGVVSVTKIYNYYK-------------KFGY-KTVVMGAS--FRNT-----GEILALAGCDL-MTIGPKLLEELE 180 (199)
Q Consensus 124 -~~~ddGV~vVk~I~~~yk-------------~~gy-kTkILAAS--FRNv-----~QV~aLAGaDa-VTIpP~VLeqL~ 180 (199)
-...-|+...+-+|..|+ ..|- +-+.|=|| .||+ .-|.+|.|-+. =|+|++-++...
T Consensus 215 ~l~g~~gIanA~l~y~~~~e~~~~~~~~~~L~~~ga~~qR~LwASTgvK~p~~~d~~YV~~Ligp~tVnT~P~~Tl~Af~ 294 (350)
T TIGR00876 215 ELQAQAGIANARLAYATYREVFEDSDCYRQIKQDAAKLQRPLFASTGVKNNDLADDLYIKALCAKHSINTAPEEAIDAVA 294 (350)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhccCHHHHHHHHCCCCCCceeeecCCCCCCcccccccHHHhcCCCccccCCHHHHHHHH
Confidence 011335666655554443 3333 34566665 3443 34667999976 699999999999
Q ss_pred cCCCcccccC
Q psy10967 181 NSTTPVDQML 190 (199)
Q Consensus 181 ~~p~~ve~~L 190 (199)
+|...-.+.+
T Consensus 295 dhg~~~~~~l 304 (350)
T TIGR00876 295 DDGNIECDTP 304 (350)
T ss_pred HcCCcCCCCC
Confidence 9865433333
No 24
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=95.49 E-value=0.049 Score=50.89 Aligned_cols=116 Identities=15% Similarity=0.114 Sum_probs=71.0
Q ss_pred CCCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcCcccccch---hhhHHHHHcCCccccc-----
Q psy10967 33 NDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQ---TEDYLDVYNNNADGQD----- 104 (199)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa---~Qa~LA~~agA~YISP----- 104 (199)
..+.+.|-.+.+||.+.|.+|+.+. -=+-.|+++-++. +-+..++++|+|+|.-
T Consensus 177 SP~~h~di~s~edl~~~I~~Lr~~~------------------~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~G 238 (368)
T PF01645_consen 177 SPPPHHDIYSIEDLAQLIEELRELN------------------PGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEG 238 (368)
T ss_dssp --SS-TT-SSHHHHHHHHHHHHHH-------------------TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT-
T ss_pred cCCCCCCcCCHHHHHHHHHHHHhhC------------------CCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCC
Confidence 3445555566666666655544433 1123466666555 3344478999999975
Q ss_pred -----chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCc---eEEEEcccCCHhhHHH--HhCCCEEeeCHH
Q psy10967 105 -----ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYK---TVVMGASFRNTGEILA--LAGCDLMTIGPK 174 (199)
Q Consensus 105 -----FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gyk---TkILAASFRNv~QV~a--LAGaDaVTIpP~ 174 (199)
..--+++| | -|-...+.++++.+..+|.+ +-+.++.|++..+|.. ..|||.|-++-.
T Consensus 239 GTGAap~~~~d~~-----G--------lP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~ 305 (368)
T PF01645_consen 239 GTGAAPLTSMDHV-----G--------LPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTA 305 (368)
T ss_dssp --SSEECCHHHHC----------------HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHH
T ss_pred CCCCCchhHHhhC-----C--------CcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecch
Confidence 23345666 5 68788899999999999875 3477889999999995 799999999988
Q ss_pred HHHHH
Q psy10967 175 LLEEL 179 (199)
Q Consensus 175 VLeqL 179 (199)
.+-.+
T Consensus 306 ~liAl 310 (368)
T PF01645_consen 306 ALIAL 310 (368)
T ss_dssp HHHHC
T ss_pred hhhhc
Confidence 87554
No 25
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.44 E-value=0.053 Score=51.97 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=72.9
Q ss_pred HHhHHHHHHHH------HHHHHHHHHHhhhhc--Cccc----ccchhhhHHHHHcCCcccc----cc---hhh-hhhhcc
Q psy10967 55 RESEEKNKIIE------NLRNEINAIKQNRHV--SYAT----KATQTEDYLDVYNNNADGQ----DE---NAK-HLVRYV 114 (199)
Q Consensus 55 ~~~~~~~~~~~------~~~~~l~aik~l~~~--~~~~----~aTa~Qa~LA~~agA~YIS----PF---VGR-IdDwyk 114 (199)
...|+|..+|+ +-...++.||.+|+. +..+ -+|..++-.++.||||+|- |= ..| +.+|
T Consensus 248 ~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~-- 325 (495)
T PTZ00314 248 ALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAV-- 325 (495)
T ss_pred HHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccC--
Confidence 34455665554 122235566666665 3444 4455889999999999983 31 223 3345
Q ss_pred cccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHH
Q psy10967 115 ANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKL 175 (199)
Q Consensus 115 k~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~V 175 (199)
| .|.+..+.++.+..+.+|. +-|-.+.+|++.+|.. .+|||+|.++-.+
T Consensus 326 ---g--------~p~~~ai~~~~~~~~~~~v-~vIadGGi~~~~di~kAla~GA~~Vm~G~~~ 376 (495)
T PTZ00314 326 ---G--------RPQASAVYHVARYARERGV-PCIADGGIKNSGDICKALALGADCVMLGSLL 376 (495)
T ss_pred ---C--------CChHHHHHHHHHHHhhcCC-eEEecCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 5 6888889999999888773 2333479999999995 6999999998654
No 26
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.38 E-value=0.091 Score=49.47 Aligned_cols=102 Identities=21% Similarity=0.270 Sum_probs=70.9
Q ss_pred HHHHHHHhhhhc--Ccc----cccchhhhHHHHHcCCccc----ccc---hhhh-hhhcccccCCCCCCCCCCChHHHHH
Q psy10967 69 NEINAIKQNRHV--SYA----TKATQTEDYLDVYNNNADG----QDE---NAKH-LVRYVANTGTKTYAPTEDPGVVSVT 134 (199)
Q Consensus 69 ~~l~aik~l~~~--~~~----~~aTa~Qa~LA~~agA~YI----SPF---VGRI-dDwykk~~G~~~~~~~~ddGV~vVk 134 (199)
+-++.||.+|+. +.. .-+|..++-.++.+||++| .|= ..|+ .+| | .|-...+.
T Consensus 251 ~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~-----g--------~p~~~~i~ 317 (450)
T TIGR01302 251 YVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGV-----G--------VPQITAVY 317 (450)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCC-----C--------ccHHHHHH
Confidence 344456666554 233 4456688999999999998 452 2343 345 4 67788889
Q ss_pred HHHHHHHhcCCceEEEE-cccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 135 KIYNYYKKFGYKTVVMG-ASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 135 ~I~~~yk~~gykTkILA-ASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
++.+..+.++ ..|+| +.+|++.+|.. .+|||+|-++ .+|..-..+|+++
T Consensus 318 ~~~~~~~~~~--vpviadGGi~~~~di~kAla~GA~~V~~G-~~~a~~~e~pg~~ 369 (450)
T TIGR01302 318 DVAEYAAQSG--IPVIADGGIRYSGDIVKALAAGADAVMLG-SLLAGTTESPGEY 369 (450)
T ss_pred HHHHHHhhcC--CeEEEeCCCCCHHHHHHHHHcCCCEEEEC-chhhcCCcCCCce
Confidence 9988887765 44665 67999999995 6999999999 4444545666654
No 27
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.28 E-value=0.053 Score=47.37 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=67.4
Q ss_pred HHHHHhhhhcCcccccch-----------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHH
Q psy10967 71 INAIKQNRHVSYATKATQ-----------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNY 139 (199)
Q Consensus 71 l~aik~l~~~~~~~~aTa-----------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~ 139 (199)
|+.|+.+-.+.-.+.||. .-++=|+-+|||||--=.=-+.+ +...+++.+.+.+.
T Consensus 42 Ir~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~GaDYiKVGLYg~kn--------------~~eA~e~m~~vvrA 107 (235)
T COG1891 42 IREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGADYIKVGLYGTKN--------------EEEALEVMKNVVRA 107 (235)
T ss_pred HHHHHHhCccceeeeeeecCCCCCCchHHHHHHHhHhhCCceEEEeeccccc--------------HHHHHHHHHHHHHH
Confidence 457777777777788876 44566888999999651111111 25689999999999
Q ss_pred HHhcCCceEEEEcccCCHhh-----------HHHHhCCCEEeeCHHH
Q psy10967 140 YKKFGYKTVVMGASFRNTGE-----------ILALAGCDLMTIGPKL 175 (199)
Q Consensus 140 yk~~gykTkILAASFRNv~Q-----------V~aLAGaDaVTIpP~V 175 (199)
.+.++++++|.||..-.... +.+.+|||.+-+...+
T Consensus 108 Vkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDTai 154 (235)
T COG1891 108 VKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDTAI 154 (235)
T ss_pred HhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEeccc
Confidence 99999999999998875443 3357999998776554
No 28
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.02 E-value=0.15 Score=44.19 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhhhcCcccccchhhhHHHHHcCCcccccc-hhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 65 ENLRNEINAIKQNRHVSYATKATQTEDYLDVYNNNADGQDE-NAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 65 ~~~~~~l~aik~l~~~~~~~~aTa~Qa~LA~~agA~YISPF-VGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
+.|.+-++.||..-..-..=.+|.-++..|.++|+|+|++= .|... +.....|..++++++.+.
T Consensus 79 ~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~-----------~t~~~~pD~~lv~~l~~~---- 143 (192)
T PF04131_consen 79 ETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYTP-----------YTKGDGPDFELVRELVQA---- 143 (192)
T ss_dssp S-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSST-----------TSTTSSHHHHHHHHHHHT----
T ss_pred cCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCCC-----------CCCCCCCCHHHHHHHHhC----
Confidence 34554445555433222222345599999999999999982 22222 222257899999998762
Q ss_pred CCceEEEEcccCCHhhHHH--HhCCCEEeeCHHH
Q psy10967 144 GYKTVVMGASFRNTGEILA--LAGCDLMTIGPKL 175 (199)
Q Consensus 144 gykTkILAASFRNv~QV~a--LAGaDaVTIpP~V 175 (199)
+.+ -|.-+-+.+++|+.+ .+||++|+|+-.+
T Consensus 144 ~~p-vIaEGri~tpe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 144 DVP-VIAEGRIHTPEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp TSE-EEEESS--SHHHHHHHHHTT-SEEEE-HHH
T ss_pred CCc-EeecCCCCCHHHHHHHHhcCCeEEEECccc
Confidence 333 567789999999996 6999999998665
No 29
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.44 E-value=0.34 Score=42.93 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=61.7
Q ss_pred cchhhhHHHHHcCCccccc--chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH-
Q psy10967 86 ATQTEDYLDVYNNNADGQD--ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA- 162 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YISP--FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a- 162 (199)
.|...+..|..+|++.|.- --||..|| | .+...++.++.+.+.. + -.-|..+.+|+..++.+
T Consensus 181 ~s~~~a~~a~~~G~d~I~v~~~gG~~~~~-----g--------~~~~~~l~~i~~~~~~-~-ipvia~GGI~~~~d~~ka 245 (299)
T cd02809 181 LTPEDALRAVDAGADGIVVSNHGGRQLDG-----A--------PATIDALPEIVAAVGG-R-IEVLLDGGIRRGTDVLKA 245 (299)
T ss_pred CCHHHHHHHHHCCCCEEEEcCCCCCCCCC-----C--------cCHHHHHHHHHHHhcC-C-CeEEEeCCCCCHHHHHHH
Confidence 4457788899999999865 44666666 4 5678888888776532 1 34677789999999996
Q ss_pred -HhCCCEEeeCHHHHHHHh
Q psy10967 163 -LAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 163 -LAGaDaVTIpP~VLeqL~ 180 (199)
..|||.|-|+-.++..+.
T Consensus 246 l~lGAd~V~ig~~~l~~~~ 264 (299)
T cd02809 246 LALGADAVLIGRPFLYGLA 264 (299)
T ss_pred HHcCCCEEEEcHHHHHHHH
Confidence 699999999999987765
No 30
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.13 E-value=0.17 Score=41.59 Aligned_cols=101 Identities=15% Similarity=0.068 Sum_probs=61.8
Q ss_pred HHHHhHHHHHHHHH-----HHHHHHHHHhhhhc--Ccccccch-------hhhHHHHHcCCcccccchhhhhhhcccccC
Q psy10967 53 LQRESEEKNKIIEN-----LRNEINAIKQNRHV--SYATKATQ-------TEDYLDVYNNNADGQDENAKHLVRYVANTG 118 (199)
Q Consensus 53 ~~~~~~~~~~~~~~-----~~~~l~aik~l~~~--~~~~~aTa-------~Qa~LA~~agA~YISPFVGRIdDwykk~~G 118 (199)
+-+.-+.|+++||- .+.+++.|+.+++. +..+-+.. .|.-.++.+||++|+--.-
T Consensus 17 ~~~~l~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~----------- 85 (206)
T TIGR03128 17 LAEKVADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGV----------- 85 (206)
T ss_pred HHHHcccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEecc-----------
Confidence 33333677777654 45678888888876 33333222 3788889999999974110
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCH-hhHHH--HhCCCEEeeCH
Q psy10967 119 TKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNT-GEILA--LAGCDLMTIGP 173 (199)
Q Consensus 119 ~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv-~QV~a--LAGaDaVTIpP 173 (199)
. +...+.++.+..+++|.+.-+=..+..++ .++.. ..|+|+++++|
T Consensus 86 --------~-~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 86 --------A-DDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred --------C-CHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 1 22456777888888774443321244433 55543 45999999976
No 31
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.06 E-value=0.22 Score=47.31 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=68.3
Q ss_pred HHHHHHhhhhcC------cccccchhhhHHHHHcCCcccc-------cchhh-hhhhcccccCCCCCCCCCCChHHHHHH
Q psy10967 70 EINAIKQNRHVS------YATKATQTEDYLDVYNNNADGQ-------DENAK-HLVRYVANTGTKTYAPTEDPGVVSVTK 135 (199)
Q Consensus 70 ~l~aik~l~~~~------~~~~aTa~Qa~LA~~agA~YIS-------PFVGR-IdDwykk~~G~~~~~~~~ddGV~vVk~ 135 (199)
-+..|+.++++. ...-+|+.++..++.+||++|. .--+| +.+| | .|-.+.+.+
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~-----g--------~p~~~~~~~ 322 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGV-----G--------VPQITAIAD 322 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCC-----C--------cCHHHHHHH
Confidence 444566666542 2344566889999999999994 22233 2344 4 577888888
Q ss_pred HHHHHHhcCCceEEEE-cccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 136 IYNYYKKFGYKTVVMG-ASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 136 I~~~yk~~gykTkILA-ASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
+.+..+.++ ..||| +.+|++.+|.. .+|||+|.++- +|..-...|++.
T Consensus 323 ~~~~~~~~~--~~viadGGi~~~~di~kAla~GA~~v~~G~-~~a~~~e~pg~~ 373 (486)
T PRK05567 323 AAEAAKKYG--IPVIADGGIRYSGDIAKALAAGASAVMLGS-MLAGTEEAPGEV 373 (486)
T ss_pred HHHHhccCC--CeEEEcCCCCCHHHHHHHHHhCCCEEEECc-cccccccCCCce
Confidence 887766554 44554 79999999995 69999999984 444444556554
No 32
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.96 E-value=0.37 Score=43.24 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=50.5
Q ss_pred chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-ccCCHhhHHH--H
Q psy10967 87 TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--L 163 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-SFRNv~QV~a--L 163 (199)
|.-|+..|+++|+|.|. +|+ +..+.++++.+..+...-+.+|.|+ .+ |++++.+ .
T Consensus 191 tleea~~A~~~GaDiI~-----LDn----------------~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~ 248 (273)
T PRK05848 191 SLEEAKNAMNAGADIVM-----CDN----------------MSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAK 248 (273)
T ss_pred CHHHHHHHHHcCCCEEE-----ECC----------------CCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHH
Confidence 33999999999999888 344 3578889998876544445566655 47 9999996 7
Q ss_pred hCCCEEeeCH
Q psy10967 164 AGCDLMTIGP 173 (199)
Q Consensus 164 AGaDaVTIpP 173 (199)
.|+|++.++-
T Consensus 249 ~GvD~IsvG~ 258 (273)
T PRK05848 249 SGVDAISSGS 258 (273)
T ss_pred cCCCEEEeCh
Confidence 9999999985
No 33
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.32 E-value=0.49 Score=45.44 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=70.4
Q ss_pred HHHHhhhhc--Ccccc----cchhhhHHHHHcCCcccc----cchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHH
Q psy10967 72 NAIKQNRHV--SYATK----ATQTEDYLDVYNNNADGQ----DENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYK 141 (199)
Q Consensus 72 ~aik~l~~~--~~~~~----aTa~Qa~LA~~agA~YIS----PFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk 141 (199)
+.||.+|++ +..+- +|+.++.-++.||||.|. | |.|.-. +.+....-|-+..|.++.+.-+
T Consensus 257 ~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~--gsictt-------~~~~~~~~p~~~av~~~~~~~~ 327 (479)
T PRK07807 257 EALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGP--GAMCTT-------RMMTGVGRPQFSAVLECAAAAR 327 (479)
T ss_pred HHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccC--Cccccc-------ccccCCchhHHHHHHHHHHHHH
Confidence 345555554 34443 477888889999999998 5 333332 1222223477888888888777
Q ss_pred hcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 142 KFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 142 ~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
.++ -.-|..+.++++.++.. .+|||++-++- +|..-.++|+++
T Consensus 328 ~~~-~~via~ggi~~~~~~~~al~~ga~~v~~g~-~~ag~~Espg~~ 372 (479)
T PRK07807 328 ELG-AHVWADGGVRHPRDVALALAAGASNVMIGS-WFAGTYESPGDL 372 (479)
T ss_pred hcC-CcEEecCCCCCHHHHHHHHHcCCCeeeccH-hhccCccCCCce
Confidence 765 34566678999999996 69999999984 444445666654
No 34
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.27 E-value=0.27 Score=41.29 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=67.1
Q ss_pred HHHHHhHHHHHHH------------HHHHHHHHHHHhhhhcCcccccch---hhhHHHHHcCCcccccchhhhhhhcccc
Q psy10967 52 QLQRESEEKNKII------------ENLRNEINAIKQNRHVSYATKATQ---TEDYLDVYNNNADGQDENAKHLVRYVAN 116 (199)
Q Consensus 52 ~~~~~~~~~~~~~------------~~~~~~l~aik~l~~~~~~~~aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~ 116 (199)
|.+.+.+.|..+| +.+.+-++.+|.. .++.+-+.. .++..+..+|++|+....+-..
T Consensus 80 ~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~--~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t------ 151 (221)
T PRK01130 80 EVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY--PGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYT------ 151 (221)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC--CCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceee------
Confidence 4555666776544 3334333344432 566554333 7788899999999965332111
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 117 TGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 117 ~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
+... ....++...++++.+.+ + -..+.+..+++++++.+ .+|+|.+.|+-.+.
T Consensus 152 -~~~~--~~~~~~~~~i~~i~~~~---~-iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 152 -EETK--KPEEPDFALLKELLKAV---G-CPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred -cCCC--CCCCcCHHHHHHHHHhC---C-CCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 1000 01134577777777654 2 34566778999999996 59999999997654
No 35
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.67 E-value=0.48 Score=42.98 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=72.2
Q ss_pred HHHHHhHHHHHHHHH------HHHHHHHHHhhhhcC--ccc----ccchhhhHHHHHcCCcccc----c---chhhhh-h
Q psy10967 52 QLQRESEEKNKIIEN------LRNEINAIKQNRHVS--YAT----KATQTEDYLDVYNNNADGQ----D---ENAKHL-V 111 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~------~~~~l~aik~l~~~~--~~~----~aTa~Qa~LA~~agA~YIS----P---FVGRId-D 111 (199)
+++..-|+|.++|+- -..-++.||.+|+.+ +.+ ..|..++-.++++|||+|. | ..+|.. .
T Consensus 98 ~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g 177 (325)
T cd00381 98 RAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTG 177 (325)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCC
Confidence 344455667776531 123355677777654 333 3455888889999999986 3 223322 1
Q ss_pred hcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 112 RYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 112 wykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
| | .|-+..+.++.+..+.++.+ -|-.+.+++..+|.+ .+|||.|-++-.+..
T Consensus 178 ~-----g--------~p~~~~i~~v~~~~~~~~vp-VIA~GGI~~~~di~kAla~GA~~VmiGt~fa~ 231 (325)
T cd00381 178 V-----G--------VPQATAVADVAAAARDYGVP-VIADGGIRTSGDIVKALAAGADAVMLGSLLAG 231 (325)
T ss_pred C-----C--------CCHHHHHHHHHHHHhhcCCc-EEecCCCCCHHHHHHHHHcCCCEEEecchhcc
Confidence 2 2 46677888888877766433 334468999999996 699999999755543
No 36
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=92.60 E-value=1.1 Score=36.55 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhhhc--Ccccccch-------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHH
Q psy10967 67 LRNEINAIKQNRHV--SYATKATQ-------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIY 137 (199)
Q Consensus 67 ~~~~l~aik~l~~~--~~~~~aTa-------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~ 137 (199)
+..|++.|+.+++. ++.+-+.. .++-.++++||++|.-- + .++.+.+.++.
T Consensus 37 ~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h------------~--------~~~~~~~~~~i 96 (202)
T cd04726 37 KSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVL------------G--------AAPLSTIKKAV 96 (202)
T ss_pred HHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEE------------e--------eCCHHHHHHHH
Confidence 46677888888875 55555432 25667889999988841 1 11224567777
Q ss_pred HHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC
Q psy10967 138 NYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG 172 (199)
Q Consensus 138 ~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp 172 (199)
+..+++|.+.-+-.-+..++.++.. ..|+|++.+.
T Consensus 97 ~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 97 KAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 7888777544332357788888875 4599998773
No 37
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.58 E-value=0.65 Score=44.02 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=59.0
Q ss_pred ccchhhhHHHHHcCCcccccchh---------hhh-hhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEccc
Q psy10967 85 KATQTEDYLDVYNNNADGQDENA---------KHL-VRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASF 154 (199)
Q Consensus 85 ~aTa~Qa~LA~~agA~YISPFVG---------RId-Dwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASF 154 (199)
.+|..++.-++.+|||+|. || |.. .| | .|-+..+..+.++.+..+. .-|..+.+
T Consensus 202 V~T~e~a~~l~~aGaD~I~--vG~g~Gs~c~tr~~~g~-----g--------~p~ltai~~v~~~~~~~~v-pVIAdGGI 265 (404)
T PRK06843 202 IVTKEAALDLISVGADCLK--VGIGPGSICTTRIVAGV-----G--------VPQITAICDVYEVCKNTNI-CIIADGGI 265 (404)
T ss_pred cCCHHHHHHHHHcCCCEEE--ECCCCCcCCcceeecCC-----C--------CChHHHHHHHHHHHhhcCC-eEEEeCCC
Confidence 5677889999999999986 23 322 12 2 4667788888887776553 34555669
Q ss_pred CCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 155 RNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 155 RNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
|++.+|.. .+|||+|-++-.+. .-..+|+++
T Consensus 266 ~~~~Di~KALalGA~aVmvGs~~a-gt~Espg~~ 298 (404)
T PRK06843 266 RFSGDVVKAIAAGADSVMIGNLFA-GTKESPSEE 298 (404)
T ss_pred CCHHHHHHHHHcCCCEEEEcceee-eeecCCCcE
Confidence 99999995 69999999985443 333455544
No 38
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=92.14 E-value=0.8 Score=42.58 Aligned_cols=110 Identities=14% Similarity=0.075 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhhcCcccccch---------hhhHHHHHcCCcccc-cchh
Q psy10967 43 LQDLKEKVLQLQRESEEKNKIIEN-----LRNEINAIKQNRHVSYATKATQ---------TEDYLDVYNNNADGQ-DENA 107 (199)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~aik~l~~~~~~~~aTa---------~Qa~LA~~agA~YIS-PFVG 107 (199)
+.++.+++..++.+.+.|+.+|+- ...+.++||.+++..-...... ...=+|+++||++|. |
T Consensus 12 ~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~--- 88 (430)
T PRK07028 12 LLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCIL--- 88 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEe---
Confidence 345666666777777888877732 3668889999988732211111 156688999999888 5
Q ss_pred hhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCC-HhhHHH--HhCCCEEeeCH
Q psy10967 108 KHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRN-TGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 108 RIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRN-v~QV~a--LAGaDaVTIpP 173 (199)
+ .+....+.++.+..+++|.+..+-..|..+ ..++.. ..|+|++++.|
T Consensus 89 ----------g--------~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p 139 (430)
T PRK07028 89 ----------G--------LADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVHV 139 (430)
T ss_pred ----------c--------CCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 1 011123466677777777655442246655 344443 47999998776
No 39
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.04 E-value=1.1 Score=42.92 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=61.4
Q ss_pred cchhhhHHHHHcCCcccccch--hhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH-
Q psy10967 86 ATQTEDYLDVYNNNADGQDEN--AKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA- 162 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YISPFV--GRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a- 162 (199)
+|..++.-++.+||++|.-=+ |.+... +.+....-|-+..+.+..+..+.++.+ -|=-+.+|++.+|..
T Consensus 275 ~t~~~~~~l~~~G~d~i~vg~g~Gs~~tt-------r~~~~~g~~~~~a~~~~~~~~~~~~~~-viadGgi~~~~di~ka 346 (475)
T TIGR01303 275 VSAEGVRDLLEAGANIIKVGVGPGAMCTT-------RMMTGVGRPQFSAVLECAAEARKLGGH-VWADGGVRHPRDVALA 346 (475)
T ss_pred CCHHHHHHHHHhCCCEEEECCcCCccccC-------ccccCCCCchHHHHHHHHHHHHHcCCc-EEEeCCCCCHHHHHHH
Confidence 456778888899999987211 111110 011111256677777777777777532 344478999999995
Q ss_pred -HhCCCEEeeCHHHHHHHhcCCCccc
Q psy10967 163 -LAGCDLMTIGPKLLEELENSTTPVD 187 (199)
Q Consensus 163 -LAGaDaVTIpP~VLeqL~~~p~~ve 187 (199)
.+|||+|.++ .+|..-.++|+++.
T Consensus 347 la~GA~~vm~g-~~~ag~~espg~~~ 371 (475)
T TIGR01303 347 LAAGASNVMVG-SWFAGTYESPGDLM 371 (475)
T ss_pred HHcCCCEEeec-hhhcccccCCCceE
Confidence 6999999999 56666677777763
No 40
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.88 E-value=0.75 Score=38.61 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=67.9
Q ss_pred HHHHHhHHHHHHHH------------HHHHHHHHHHhhhhcC-ccccc---chhhhHHHHHcCCcccccc-hhhhhhhcc
Q psy10967 52 QLQRESEEKNKIIE------------NLRNEINAIKQNRHVS-YATKA---TQTEDYLDVYNNNADGQDE-NAKHLVRYV 114 (199)
Q Consensus 52 ~~~~~~~~~~~~~~------------~~~~~l~aik~l~~~~-~~~~a---Ta~Qa~LA~~agA~YISPF-VGRIdDwyk 114 (199)
|++.+.++|..+|. .+.+ -++.+++.| +.+.+ |..++..+..+|++|+..+ .|+-..-
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~p~~~~~~~---~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~-- 158 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPRPDGETLAE---LIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEET-- 158 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCcCHHH---HHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCccccccc--
Confidence 66677777775441 3333 334444444 44322 3378889999999999764 3432110
Q ss_pred cccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 115 ANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 115 k~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
. ....++.+.++++.+.+ + -..+.++.+++++++.+ .+|||.+-++-.+.+
T Consensus 159 ------~--~~~~~~~~~l~~i~~~~---~-ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 159 ------A--KTEDPDFELLKELRKAL---G-IPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred ------c--CCCCCCHHHHHHHHHhc---C-CCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 0 01134577778777655 2 34555678999999996 689999999977643
No 41
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.64 E-value=0.39 Score=41.45 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=59.9
Q ss_pred HHHHHhHHHHHHHH---HHHHHHHHHHhhhhc------CcccccchhhhHHHHHcCCccc-ccchhhhhhhcccccCCCC
Q psy10967 52 QLQRESEEKNKIIE---NLRNEINAIKQNRHV------SYATKATQTEDYLDVYNNNADG-QDENAKHLVRYVANTGTKT 121 (199)
Q Consensus 52 ~~~~~~~~~~~~~~---~~~~~l~aik~l~~~------~~~~~aTa~Qa~LA~~agA~YI-SPFVGRIdDwykk~~G~~~ 121 (199)
-.+...+.|+++|| +--+.+++|+.++++ |.-|--|..|+-.|+.|||+|+ ||.+
T Consensus 25 ~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~--------------- 89 (204)
T TIGR01182 25 LAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGL--------------- 89 (204)
T ss_pred HHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCC---------------
Confidence 34566778888776 345667788888765 3344445599999999999996 4421
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 122 YAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 122 ~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+ .++.+.-+++|. -.+ ....++.++.. .+|||++=+-|
T Consensus 90 -----~------~~v~~~~~~~~i--~~i-PG~~TptEi~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 90 -----T------PELAKHAQDHGI--PII-PGVATPSEIMLALELGITALKLFP 129 (204)
T ss_pred -----C------HHHHHHHHHcCC--cEE-CCCCCHHHHHHHHHCCCCEEEECC
Confidence 1 345555555553 233 36667777775 58888765544
No 42
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.41 E-value=1.5 Score=39.73 Aligned_cols=87 Identities=9% Similarity=-0.031 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhhcCcccccc---hhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 67 LRNEINAIKQNRHVSYATKAT---QTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 67 ~~~~l~aik~l~~~~~~~~aT---a~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
+++.++.+|.......++... ..|+..|+.+|||||.- |++ +.+.++++...++..
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~L-----Dn~----------------~~e~l~~av~~~~~~ 240 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIML-----DNM----------------PVDLMQQAVQLIRQQ 240 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEE-----CCC----------------CHHHHHHHHHHHHhc
Confidence 444444555543222333333 49999999999999975 554 568888888888765
Q ss_pred CCceEEEEcccCCHhhHHH--HhCCCEEeeCHH
Q psy10967 144 GYKTVVMGASFRNTGEILA--LAGCDLMTIGPK 174 (199)
Q Consensus 144 gykTkILAASFRNv~QV~a--LAGaDaVTIpP~ 174 (199)
.-+..+.|+.==|.+.+.+ ..|+|.+.++--
T Consensus 241 ~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl 273 (288)
T PRK07428 241 NPRVKIEASGNITLETIRAVAETGVDYISSSAP 273 (288)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCEEEEchh
Confidence 5566666664447888875 799999888853
No 43
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.19 E-value=0.84 Score=41.28 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhc
Q psy10967 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~ 181 (199)
..+.+.++.+. ..--.-|..+.+|+..+|.. ..|||+|.++-.++..++.
T Consensus 242 t~~~l~~~~~~---~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~ 293 (326)
T cd02811 242 TAASLLEVRSA---LPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE 293 (326)
T ss_pred HHHHHHHHHHH---cCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc
Confidence 34444444433 32235667788999999996 6899999999999998876
No 44
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.82 E-value=1.9 Score=41.72 Aligned_cols=126 Identities=6% Similarity=0.032 Sum_probs=74.4
Q ss_pred HHHHhHHHHHHHHH-H-----HHHHHHHHhhhhc-C--cccc----cchhhhHHHHHcCCccccc--chhhhhhhccccc
Q psy10967 53 LQRESEEKNKIIEN-L-----RNEINAIKQNRHV-S--YATK----ATQTEDYLDVYNNNADGQD--ENAKHLVRYVANT 117 (199)
Q Consensus 53 ~~~~~~~~~~~~~~-~-----~~~l~aik~l~~~-~--~~~~----aTa~Qa~LA~~agA~YISP--FVGRIdDwykk~~ 117 (199)
.+...++|..+|+- . ..-+++||.+|+. + +.+. +|+.++-.++.|||++|-- =-|.++--
T Consensus 247 a~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~t----- 321 (502)
T PRK07107 247 VPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICIT----- 321 (502)
T ss_pred HHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCccc-----
Confidence 34455677766631 1 1124566666664 2 4443 4667888899999998622 11211110
Q ss_pred CCCCCCCCCCChHHHHHHHHHH----HHhcCCc-eEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 118 GTKTYAPTEDPGVVSVTKIYNY----YKKFGYK-TVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 118 G~~~~~~~~ddGV~vVk~I~~~----yk~~gyk-TkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
+.....--|-+..|.++.+. ++.+|.+ +-|.-+.+|+..+|.. .+|||+|-++ .+|..-.++|+++
T Consensus 322 --r~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G-~~~ag~~espg~~ 394 (502)
T PRK07107 322 --REQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLG-RYFARFDESPTNK 394 (502)
T ss_pred --ccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeC-hhhhccccCCCcE
Confidence 00001113455566666664 4455743 4555688999999995 6999999998 5666666777765
No 45
>PLN02535 glycolate oxidase
Probab=90.69 E-value=1.8 Score=40.43 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=59.0
Q ss_pred cchhhhHHHHHcCCccccc--chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH-
Q psy10967 86 ATQTEDYLDVYNNNADGQD--ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA- 162 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YISP--FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a- 162 (199)
.|...+-.|+.+|+|.|.- --||..|| + -+.+.++.++.+.+.. .-.-|..+.+|+..+|..
T Consensus 232 ~~~~dA~~a~~~GvD~I~vsn~GGr~~d~-----~--------~~t~~~L~ev~~av~~--~ipVi~dGGIr~g~Dv~KA 296 (364)
T PLN02535 232 LTREDAIKAVEVGVAGIIVSNHGARQLDY-----S--------PATISVLEEVVQAVGG--RVPVLLDGGVRRGTDVFKA 296 (364)
T ss_pred CCHHHHHHHHhcCCCEEEEeCCCcCCCCC-----C--------hHHHHHHHHHHHHHhc--CCCEEeeCCCCCHHHHHHH
Confidence 4557799999999999733 44565555 3 3445666666654432 245778899999999996
Q ss_pred -HhCCCEEeeCHHHHHHHh
Q psy10967 163 -LAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 163 -LAGaDaVTIpP~VLeqL~ 180 (199)
..|||+|.|+-.++..+.
T Consensus 297 LalGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 297 LALGAQAVLVGRPVIYGLA 315 (364)
T ss_pred HHcCCCEEEECHHHHhhhh
Confidence 699999999999988765
No 46
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=90.41 E-value=1.4 Score=40.42 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhc
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~ 181 (199)
.|....+.++.+. ..--+-|-.+.+|+..++.. .+|||+|-++-.++..+..
T Consensus 246 ~pt~~~l~~i~~~---~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~ 299 (352)
T PRK05437 246 IPTAQSLLEARSL---LPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALE 299 (352)
T ss_pred CCHHHHHHHHHHh---cCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHh
Confidence 3455555555543 22235667788999999996 6899999999999988653
No 47
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=90.26 E-value=3 Score=38.85 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHHhcCC--c-eEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHH
Q psy10967 127 DPGVVSVTKIYNYYKKFGY--K-TVVMGASFRNTGEILA--LAGCDLMTIGPKLLEEL 179 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gy--k-TkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL 179 (199)
-|-+..+.++++.++..+. + +-|.+..+|+..+|.. ..|||.|-++-.++..+
T Consensus 264 ~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al 321 (392)
T cd02808 264 LPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIAL 321 (392)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhc
Confidence 5778888999998887754 3 3455688999999996 68999999999998765
No 48
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=88.95 E-value=2.9 Score=34.90 Aligned_cols=86 Identities=8% Similarity=0.054 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhhhcC--cccccch-hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 67 LRNEINAIKQNRHVS--YATKATQ-TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 67 ~~~~l~aik~l~~~~--~~~~aTa-~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
+.+-++++|+...+. +-+.+.- .|+.-|+.+|+|.|. +|++ ..+.++++.+.++..
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~-----lD~~----------------~~~~~~~~v~~l~~~ 124 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIM-----LDNM----------------SPEDLKEAVEELREL 124 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEE-----EES-----------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEE-----ecCc----------------CHHHHHHHHHHHhhc
Confidence 444455666665444 3343333 899999999998775 4776 358899999999998
Q ss_pred CCceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 144 GYKTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 144 gykTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+.+.+|.+++==|.+.|.+ ..|+|++-++-
T Consensus 125 ~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 125 NPRVKIEASGGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp TTTSEEEEESSSSTTTHHHHHHTT-SEEEECH
T ss_pred CCcEEEEEECCCCHHHHHHHHhcCCCEEEcCh
Confidence 8899999988777777775 78999988874
No 49
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.15 E-value=1.1 Score=37.51 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=46.4
Q ss_pred CcccccchhhhHHHHHcCCccc-ccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhh
Q psy10967 81 SYATKATQTEDYLDVYNNNADG-QDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGE 159 (199)
Q Consensus 81 ~~~~~aTa~Qa~LA~~agA~YI-SPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~Q 159 (199)
|..+-.+..|.=+|.++||++| +|-. +. ++...-+.++.. .+++ ..|+.|
T Consensus 67 g~gtvl~~d~~~~A~~~gAdgv~~p~~----------------------~~----~~~~~~~~~~~~-~i~G--~~t~~e 117 (187)
T PRK07455 67 GTGTILTLEDLEEAIAAGAQFCFTPHV----------------------DP----ELIEAAVAQDIP-IIPG--ALTPTE 117 (187)
T ss_pred eEEEEEcHHHHHHHHHcCCCEEECCCC----------------------CH----HHHHHHHHcCCC-EEcC--cCCHHH
Confidence 4444444489999999999987 5521 11 122233344443 4555 789999
Q ss_pred HHH--HhCCCEE------e-eCHHHHHHHhc
Q psy10967 160 ILA--LAGCDLM------T-IGPKLLEELEN 181 (199)
Q Consensus 160 V~a--LAGaDaV------T-IpP~VLeqL~~ 181 (199)
+.+ ..|+|++ + .+++.++++..
T Consensus 118 ~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~ 148 (187)
T PRK07455 118 IVTAWQAGASCVKVFPVQAVGGADYIKSLQG 148 (187)
T ss_pred HHHHHHCCCCEEEECcCCcccCHHHHHHHHh
Confidence 985 5999999 3 36788888764
No 50
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.09 E-value=1 Score=38.85 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=57.6
Q ss_pred HHHHhHHHHHHHH---HHHHHHHHHHhhhhc---------CcccccchhhhHHHHHcCCccc-ccchhhhhhhcccccCC
Q psy10967 53 LQRESEEKNKIIE---NLRNEINAIKQNRHV---------SYATKATQTEDYLDVYNNNADG-QDENAKHLVRYVANTGT 119 (199)
Q Consensus 53 ~~~~~~~~~~~~~---~~~~~l~aik~l~~~---------~~~~~aTa~Qa~LA~~agA~YI-SPFVGRIdDwykk~~G~ 119 (199)
.+...+.|++++| +--+.+++|+.++++ |.-|--|..|+-.|+.+||+|+ ||-+
T Consensus 31 ~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~------------- 97 (213)
T PRK06552 31 SLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSF------------- 97 (213)
T ss_pred HHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCC-------------
Confidence 4455677777776 223456677777653 3333444599999999999995 6621
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEee------CHHHHHHHh
Q psy10967 120 KTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI------GPKLLEELE 180 (199)
Q Consensus 120 ~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTI------pP~VLeqL~ 180 (199)
+ .++.++-+.+|.. ++ ....++.|+.+ .+|+|++-+ +++.++.+.
T Consensus 98 --------~-----~~v~~~~~~~~i~--~i-PG~~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~ 150 (213)
T PRK06552 98 --------N-----RETAKICNLYQIP--YL-PGCMTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIK 150 (213)
T ss_pred --------C-----HHHHHHHHHcCCC--EE-CCcCCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHh
Confidence 1 2333344444322 22 34456666664 477777666 345566654
No 51
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=87.84 E-value=2.1 Score=35.97 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=45.5
Q ss_pred ccchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--
Q psy10967 85 KATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA-- 162 (199)
Q Consensus 85 ~aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a-- 162 (199)
+++..|.-.|+.+||++|.+-..-.. .|..+.+.++.+..++++ +..++ ....+++++..
T Consensus 79 g~~~~~~~~a~~aGad~I~~~~~~~~----------------~p~~~~~~~~i~~~~~~g-~~~ii-v~v~t~~ea~~a~ 140 (219)
T cd04729 79 TPTIEEVDALAAAGADIIALDATDRP----------------RPDGETLAELIKRIHEEY-NCLLM-ADISTLEEALNAA 140 (219)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCC----------------CCCCcCHHHHHHHHHHHh-CCeEE-EECCCHHHHHHHH
Confidence 33445889999999999988321110 122234556666667776 45554 47788988875
Q ss_pred HhCCCEEee
Q psy10967 163 LAGCDLMTI 171 (199)
Q Consensus 163 LAGaDaVTI 171 (199)
.+|+|++.+
T Consensus 141 ~~G~d~i~~ 149 (219)
T cd04729 141 KLGFDIIGT 149 (219)
T ss_pred HcCCCEEEc
Confidence 689999855
No 52
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=87.28 E-value=6.6 Score=36.24 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=62.2
Q ss_pred chhhhHHHHHcCCccccc--chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC-ceEEEEcccCCHhhHHH-
Q psy10967 87 TQTEDYLDVYNNNADGQD--ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMGASFRNTGEILA- 162 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YISP--FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy-kTkILAASFRNv~QV~a- 162 (199)
+...+..|+.+|++.|.- --||..|. ..+.+.++.++++.++..+- -.-|..+++||-.+|.+
T Consensus 223 ~~~dA~~a~~~G~d~I~vsnhgG~~~d~-------------~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~ka 289 (344)
T cd02922 223 TVEDAVLAAEYGVDGIVLSNHGGRQLDT-------------APAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKA 289 (344)
T ss_pred CHHHHHHHHHcCCCEEEEECCCcccCCC-------------CCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHH
Confidence 447788999999998654 33444433 24668888899888766433 35677889999999996
Q ss_pred -HhCCCEEeeCHHHHHHHhc
Q psy10967 163 -LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 163 -LAGaDaVTIpP~VLeqL~~ 181 (199)
..|||+|-|+-.++..+..
T Consensus 290 laLGA~aV~iG~~~l~~l~~ 309 (344)
T cd02922 290 LCLGAKAVGLGRPFLYALSA 309 (344)
T ss_pred HHcCCCEEEECHHHHHHHhh
Confidence 7999999999999887754
No 53
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=87.17 E-value=3.1 Score=40.29 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=54.5
Q ss_pred ccchhhhHHHHHcCCcccccc--hhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH
Q psy10967 85 KATQTEDYLDVYNNNADGQDE--NAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA 162 (199)
Q Consensus 85 ~aTa~Qa~LA~~agA~YISPF--VGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a 162 (199)
.+|..++.-|+++|||.|.-= -|.+..- +.....-.|-...+..+.++.+..+ -.-|..+.+|+..+|..
T Consensus 297 v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t-------~~~~~~g~~~~~~i~~~~~~~~~~~-vpVIadGGI~~~~di~k 368 (505)
T PLN02274 297 VVTMYQAQNLIQAGVDGLRVGMGSGSICTT-------QEVCAVGRGQATAVYKVASIAAQHG-VPVIADGGISNSGHIVK 368 (505)
T ss_pred CCCHHHHHHHHHcCcCEEEECCCCCccccC-------ccccccCCCcccHHHHHHHHHHhcC-CeEEEeCCCCCHHHHHH
Confidence 467789999999999998431 1111110 0000000122334445555555544 34666788999999996
Q ss_pred --HhCCCEEeeCHHHHHHHhcCCCc
Q psy10967 163 --LAGCDLMTIGPKLLEELENSTTP 185 (199)
Q Consensus 163 --LAGaDaVTIpP~VLeqL~~~p~~ 185 (199)
.+|||+|-++-.+.. -..+|++
T Consensus 369 Ala~GA~~V~vGs~~~~-t~Esp~~ 392 (505)
T PLN02274 369 ALTLGASTVMMGSFLAG-TTEAPGE 392 (505)
T ss_pred HHHcCCCEEEEchhhcc-cccCCcc
Confidence 699999999965543 3344544
No 54
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.93 E-value=1 Score=38.83 Aligned_cols=51 Identities=8% Similarity=-0.091 Sum_probs=34.4
Q ss_pred HHhHHHHHHHH---HHHHHHHHHHhhhhc------CcccccchhhhHHHHHcCCccc-ccc
Q psy10967 55 RESEEKNKIIE---NLRNEINAIKQNRHV------SYATKATQTEDYLDVYNNNADG-QDE 105 (199)
Q Consensus 55 ~~~~~~~~~~~---~~~~~l~aik~l~~~------~~~~~aTa~Qa~LA~~agA~YI-SPF 105 (199)
...+.|+++|| +--+++++|+.++++ |.-|.-|..|+-.|+.|||+|+ ||.
T Consensus 35 al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 35 ALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred HHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 34445677666 344667777777765 4444444599999999999996 553
No 55
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=86.72 E-value=2.8 Score=35.79 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=63.3
Q ss_pred HHHHHHhHHHHHHHHH---HHHHHHHHHhhhhcC-------cccccchhhhHHHHHcCCcccccchhhhhhhcccccCCC
Q psy10967 51 LQLQRESEEKNKIIEN---LRNEINAIKQNRHVS-------YATKATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTK 120 (199)
Q Consensus 51 ~~~~~~~~~~~~~~~~---~~~~l~aik~l~~~~-------~~~~aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~ 120 (199)
...+.+.+.|++++|- --+.+++|+.++++- .-|--|..|+-.|..+||+|+-. ++
T Consensus 26 ~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs------------p~-- 91 (206)
T PRK09140 26 AHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT------------PN-- 91 (206)
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC------------CC--
Confidence 3456677888887762 224455777776542 11233448999999999998754 01
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEee------CHHHHHHHhc
Q psy10967 121 TYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI------GPKLLEELEN 181 (199)
Q Consensus 121 ~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTI------pP~VLeqL~~ 181 (199)
.+ .++.+..+..| ..+..+..++.|+.+ ..|+|++.+ +|+.++++..
T Consensus 92 ------~~-----~~v~~~~~~~~---~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~ 146 (206)
T PRK09140 92 ------TD-----PEVIRRAVALG---MVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRA 146 (206)
T ss_pred ------CC-----HHHHHHHHHCC---CcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHh
Confidence 22 22333333333 234455889999885 689999876 5666776653
No 56
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=86.39 E-value=4.3 Score=36.54 Aligned_cols=107 Identities=12% Similarity=0.052 Sum_probs=69.3
Q ss_pred HhHHHHHHHHHHH-HHHHHHHhhhhcCcccccch---hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHH
Q psy10967 56 ESEEKNKIIENLR-NEINAIKQNRHVSYATKATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVV 131 (199)
Q Consensus 56 ~~~~~~~~~~~~~-~~l~aik~l~~~~~~~~aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~ 131 (199)
..|+|.++|..-. .--+.++.+|+.|+.+-++. ..+..|.++|+|.|.. -|| +. .| +.. ..+-..
T Consensus 83 ~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv-~g~--ea----gG---h~g-~~~~~~ 151 (307)
T TIGR03151 83 VIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIA-EGM--ES----GG---HIG-ELTTMA 151 (307)
T ss_pred HHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEE-ECc--cc----CC---CCC-CCcHHH
Confidence 3456666664211 00136788888898876644 7788899999999875 344 21 02 111 123477
Q ss_pred HHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 132 SVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 132 vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
++.++.+.+ + -.-|.++.+.+..++.+ ..|||.|.++-.++.
T Consensus 152 ll~~v~~~~---~-iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 152 LVPQVVDAV---S-IPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred HHHHHHHHh---C-CCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 788877644 2 33566678999999885 589999988766543
No 57
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=86.12 E-value=7.5 Score=35.95 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=57.8
Q ss_pred hhhHHHHHcCCccc--ccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceE-EEEcccCCHhhHHH--H
Q psy10967 89 TEDYLDVYNNNADG--QDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTV-VMGASFRNTGEILA--L 163 (199)
Q Consensus 89 ~Qa~LA~~agA~YI--SPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTk-ILAASFRNv~QV~a--L 163 (199)
..+-.|+.+|+++| |=-=||-.|| | .+.++++.++.+.. +.++. ++-..+|+-.+|.. .
T Consensus 237 ~da~~~~~~G~~~i~vs~hGGr~~d~-----~--------~~~~~~L~~i~~~~---~~~~~i~~dgGir~g~Dv~kala 300 (356)
T PF01070_consen 237 EDAKRAVDAGVDGIDVSNHGGRQLDW-----G--------PPTIDALPEIRAAV---GDDIPIIADGGIRRGLDVAKALA 300 (356)
T ss_dssp HHHHHHHHTT-SEEEEESGTGTSSTT-----S---------BHHHHHHHHHHHH---TTSSEEEEESS--SHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEecCCCcccCcc-----c--------cccccccHHHHhhh---cCCeeEEEeCCCCCHHHHHHHHH
Confidence 77889999999865 4467888888 6 78899999999876 33444 55678999999996 6
Q ss_pred hCCCEEeeCHHHHHHHh
Q psy10967 164 AGCDLMTIGPKLLEELE 180 (199)
Q Consensus 164 AGaDaVTIpP~VLeqL~ 180 (199)
.|||+|-|+-.++..+.
T Consensus 301 LGA~~v~igr~~l~~l~ 317 (356)
T PF01070_consen 301 LGADAVGIGRPFLYALA 317 (356)
T ss_dssp TT-SEEEESHHHHHHHH
T ss_pred cCCCeEEEccHHHHHHH
Confidence 99999999999998874
No 58
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=85.46 E-value=3.3 Score=36.92 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=60.2
Q ss_pred HHHhhhhcCcccccch----------h-hhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHH
Q psy10967 73 AIKQNRHVSYATKATQ----------T-EDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYK 141 (199)
Q Consensus 73 aik~l~~~~~~~~aTa----------~-Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk 141 (199)
+|+........|.||. . .++-++..|++||=-=+-...++ +..++.++.+.+.++
T Consensus 44 ~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~--------------~~a~e~l~~v~~av~ 109 (235)
T PF04476_consen 44 EIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY--------------DEAIEALEAVVRAVK 109 (235)
T ss_pred HHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH--------------HHHHHHHHHHHHHHh
Confidence 5666666567888887 2 23445668999986533233343 457889999999999
Q ss_pred hcCCceEEEEcccCCHh--------hHH---HHhCCCEEee
Q psy10967 142 KFGYKTVVMGASFRNTG--------EIL---ALAGCDLMTI 171 (199)
Q Consensus 142 ~~gykTkILAASFRNv~--------QV~---aLAGaDaVTI 171 (199)
.+.-+++++|+.|-... ++. +.+|||.+-+
T Consensus 110 ~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMl 150 (235)
T PF04476_consen 110 DFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVML 150 (235)
T ss_pred hhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEE
Confidence 98889999999997654 333 4689998755
No 59
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=85.43 E-value=4.8 Score=36.49 Aligned_cols=66 Identities=14% Similarity=-0.067 Sum_probs=53.0
Q ss_pred chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--Hh
Q psy10967 87 TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LA 164 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LA 164 (199)
|..|+.-|+.+|||.|.- |+| ..+.++++..+++..+.+..+-++.==|.+.+.+ ..
T Consensus 198 tleqa~ea~~agaDiI~L-----Dn~----------------~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~t 256 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQL-----DKF----------------SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADC 256 (284)
T ss_pred CHHHHHHHHHcCCCEEEE-----CCC----------------CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc
Confidence 339999999999999976 776 3578888888887655677888887778888875 78
Q ss_pred CCCEEeeCH
Q psy10967 165 GCDLMTIGP 173 (199)
Q Consensus 165 GaDaVTIpP 173 (199)
|+|++.++.
T Consensus 257 GvD~Is~ga 265 (284)
T PRK06096 257 GIRLFITSA 265 (284)
T ss_pred CCCEEEECc
Confidence 999987774
No 60
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=85.43 E-value=4.6 Score=35.04 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHhhhhcCccccc---ch--------hhhHHHHHcCCc
Q psy10967 46 LKEKVLQLQRESEEKNKI--------------IENLRNEINAIKQNRHVSYATKA---TQ--------TEDYLDVYNNNA 100 (199)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~aik~l~~~~~~~~a---Ta--------~Qa~LA~~agA~ 100 (199)
.+.|+.+.+++-++|-.- .+.+++++++++... .+..++. |. .=.-+++.+|||
T Consensus 73 ~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agad 151 (221)
T PRK00507 73 TAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGAD 151 (221)
T ss_pred HHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCC
Confidence 455666666666654321 467777888888743 2544554 33 123357899999
Q ss_pred ccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-ccCCHhhHHH--HhCCCEEeeC--HHH
Q psy10967 101 DGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTIG--PKL 175 (199)
Q Consensus 101 YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-SFRNv~QV~a--LAGaDaVTIp--P~V 175 (199)
||.---|.- . | ...++.|+-+.+.. +-+..|.|+ .+|+.+|+.+ .+||+.+-.+ .++
T Consensus 152 fIKTsTG~~--~-----~--------gat~~~v~~m~~~~---~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~~~i 213 (221)
T PRK00507 152 FVKTSTGFS--T-----G--------GATVEDVKLMRETV---GPRVGVKASGGIRTLEDALAMIEAGATRLGTSAGVAI 213 (221)
T ss_pred EEEcCCCCC--C-----C--------CCCHHHHHHHHHHh---CCCceEEeeCCcCCHHHHHHHHHcCcceEccCcHHHH
Confidence 887644431 0 1 23455555555444 567888877 6999999997 6999986544 445
Q ss_pred HHHH
Q psy10967 176 LEEL 179 (199)
Q Consensus 176 LeqL 179 (199)
++++
T Consensus 214 ~~~~ 217 (221)
T PRK00507 214 LKGL 217 (221)
T ss_pred Hhcc
Confidence 5553
No 61
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=85.33 E-value=5.6 Score=32.39 Aligned_cols=77 Identities=8% Similarity=-0.038 Sum_probs=48.5
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.++..|...|+|||. +|.+..-..+ .+ . ....|++.++++.+.++ ++.|++++==|.+.+.+ .+|+
T Consensus 115 ~e~~~a~~~gaD~v~--~~~~~~~~~~-~~---~--~~~~g~~~~~~~~~~~~----~~~v~a~GGI~~~~i~~~~~~Ga 182 (212)
T PRK00043 115 EEAAAALAAGADYVG--VGPIFPTPTK-KD---A--KAPQGLEGLREIRAAVG----DIPIVAIGGITPENAPEVLEAGA 182 (212)
T ss_pred HHHHHHhHcCCCEEE--ECCccCCCCC-CC---C--CCCCCHHHHHHHHHhcC----CCCEEEECCcCHHHHHHHHHcCC
Confidence 578888899999994 2322221000 00 0 01236888888887763 25566554337888876 6899
Q ss_pred CEEeeCHHHHH
Q psy10967 167 DLMTIGPKLLE 177 (199)
Q Consensus 167 DaVTIpP~VLe 177 (199)
|.+.++-.++.
T Consensus 183 ~gv~~gs~i~~ 193 (212)
T PRK00043 183 DGVAVVSAITG 193 (212)
T ss_pred CEEEEeHHhhc
Confidence 99999877653
No 62
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=85.03 E-value=3.1 Score=37.80 Aligned_cols=91 Identities=8% Similarity=0.014 Sum_probs=52.7
Q ss_pred hhhHHHHHcCCcccccchhhh-hhhcccc--cCCCCC--CCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH-
Q psy10967 89 TEDYLDVYNNNADGQDENAKH-LVRYVAN--TGTKTY--APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA- 162 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRI-dDwykk~--~G~~~~--~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a- 162 (199)
.-+-....+|+++|.-. ||- .+|..-. ...+.+ ....+-|+.....+.+..+...--.-|..+.+|+..++..
T Consensus 194 ~~a~~L~~aGvd~I~Vs-g~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~ka 272 (333)
T TIGR02151 194 EVAKLLADAGVSAIDVA-GAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKA 272 (333)
T ss_pred HHHHHHHHcCCCEEEEC-CCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHH
Confidence 44566678999998775 431 1110000 000000 0001225555555555543122234667788999999996
Q ss_pred -HhCCCEEeeCHHHHHHHh
Q psy10967 163 -LAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 163 -LAGaDaVTIpP~VLeqL~ 180 (199)
..|||+|-++-.++..+.
T Consensus 273 LalGAd~V~igr~~L~~~~ 291 (333)
T TIGR02151 273 IALGADAVGMARPFLKAAL 291 (333)
T ss_pred HHhCCCeehhhHHHHHHHH
Confidence 589999999999998876
No 63
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.47 E-value=6.1 Score=35.70 Aligned_cols=64 Identities=8% Similarity=-0.027 Sum_probs=49.2
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcC--CceEEEEcccCCHhhHHH--Hh
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFG--YKTVVMGASFRNTGEILA--LA 164 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~g--ykTkILAASFRNv~QV~a--LA 164 (199)
.|+..|+.+|||.|.- |+. ..+.++++...++..+ -+.++.|+.==|.+.|.+ ..
T Consensus 193 eea~~a~~agaDiI~L-----Dn~----------------~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 193 EDALKAAKAGADIIML-----DNM----------------TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred HHHHHHHHcCcCEEEE-----CCC----------------CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 9999999999996643 654 4688999999888866 356666663447777775 68
Q ss_pred CCCEEeeCH
Q psy10967 165 GCDLMTIGP 173 (199)
Q Consensus 165 GaDaVTIpP 173 (199)
|+|++.++.
T Consensus 252 GvD~Is~ga 260 (278)
T PRK08385 252 DVDVISLGA 260 (278)
T ss_pred CCCEEEeCh
Confidence 999998885
No 64
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=84.10 E-value=5 Score=32.60 Aligned_cols=87 Identities=11% Similarity=0.011 Sum_probs=55.2
Q ss_pred HHHhhhhcCccccc------chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCc
Q psy10967 73 AIKQNRHVSYATKA------TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYK 146 (199)
Q Consensus 73 aik~l~~~~~~~~a------Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gyk 146 (199)
.++..++.|+.+-. |..+...+...|++|+.-+.++-.... | ...+.+.++++.+. .+
T Consensus 95 ~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~----~-------~~~~~~~i~~~~~~-----~~ 158 (202)
T cd04726 95 AVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA----G-------GWWPEDDLKKVKKL-----LG 158 (202)
T ss_pred HHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc----C-------CCCCHHHHHHHHhh-----cC
Confidence 34444455666553 446666677889999987665533221 1 13467777777655 34
Q ss_pred eEEEEc-ccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 147 TVVMGA-SFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 147 TkILAA-SFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
+.|++. .+ |++++.+ .+|+|.+.++-.++
T Consensus 159 ~~i~~~GGI-~~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 159 VKVAVAGGI-TPDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred CCEEEECCc-CHHHHHHHHhcCCCEEEEeehhc
Confidence 555554 55 5888886 48999999997765
No 65
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=83.80 E-value=8.3 Score=34.09 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc--------Ccccccch-hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCC
Q psy10967 58 EEKNKIIENLRNEINAIKQNRHV--------SYATKATQ-TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDP 128 (199)
Q Consensus 58 ~~~~~~~~~~~~~l~aik~l~~~--------~~~~~aTa-~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~dd 128 (199)
|-|.-.| .++|++||+.||+. ..+|.=|. ..+=||+.+||+++.- . | -.
T Consensus 33 EvGTpLi--k~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV-------~-----g--------~A 90 (217)
T COG0269 33 EVGTPLI--KAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTV-------L-----G--------AA 90 (217)
T ss_pred EeCcHHH--HHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEE-------E-----e--------cC
Confidence 4555444 46889999999987 33333333 8899999999998765 2 3 23
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH---HhCCCEEee
Q psy10967 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA---LAGCDLMTI 171 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a---LAGaDaVTI 171 (199)
..+.+++..+.-+++|..+++===+.+++.+... .+|.|.+-+
T Consensus 91 ~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~ 136 (217)
T COG0269 91 DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL 136 (217)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE
Confidence 4788899999999999877776667778887774 389988654
No 66
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=83.36 E-value=5.5 Score=36.73 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=58.4
Q ss_pred cchhhhHHHHHcCCcccccc--hhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH-
Q psy10967 86 ATQTEDYLDVYNNNADGQDE--NAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA- 162 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YISPF--VGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a- 162 (199)
+|...+..++.+||+.|--= -||+. |-+-..| ....++++..|.++.+.. + -.-|--+.+|+..+|..
T Consensus 146 ~t~e~a~~l~~aGad~I~V~~G~G~~~-~tr~~~g----~g~~~~~l~ai~ev~~a~---~-~pVIadGGIr~~~Di~KA 216 (321)
T TIGR01306 146 GTPEAVRELENAGADATKVGIGPGKVC-ITKIKTG----FGTGGWQLAALRWCAKAA---R-KPIIADGGIRTHGDIAKS 216 (321)
T ss_pred CCHHHHHHHHHcCcCEEEECCCCCccc-cceeeec----cCCCchHHHHHHHHHHhc---C-CeEEEECCcCcHHHHHHH
Confidence 57778888899999997532 24443 1111112 001134566777777644 2 34666689999999995
Q ss_pred -HhCCCEEeeCHHHHHHHhcCCCccc
Q psy10967 163 -LAGCDLMTIGPKLLEELENSTTPVD 187 (199)
Q Consensus 163 -LAGaDaVTIpP~VLeqL~~~p~~ve 187 (199)
.+|||+|-+. .+|..-..+|++..
T Consensus 217 La~GAd~Vmig-~~~ag~~Espg~~~ 241 (321)
T TIGR01306 217 IRFGASMVMIG-SLFAGHEESPGETV 241 (321)
T ss_pred HHcCCCEEeec-hhhcCcccCCCceE
Confidence 6899999998 45555556666553
No 67
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=82.30 E-value=10 Score=29.87 Aligned_cols=75 Identities=11% Similarity=-0.029 Sum_probs=44.8
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-ccCCHhhHHH--HhC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAG 165 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-SFRNv~QV~a--LAG 165 (199)
.++..|..+|+|||. ++.+..-. .+ ... ....|.+.++++.+. .+..|+++ ++ +.+.+.+ .+|
T Consensus 106 ~~~~~~~~~g~d~i~--~~~~~~~~---~~-~~~--~~~~~~~~~~~~~~~-----~~~pv~a~GGi-~~~~i~~~~~~G 171 (196)
T cd00564 106 EEALRAEELGADYVG--FGPVFPTP---TK-PGA--GPPLGLELLREIAEL-----VEIPVVAIGGI-TPENAAEVLAAG 171 (196)
T ss_pred HHHHHHhhcCCCEEE--ECCccCCC---CC-CCC--CCCCCHHHHHHHHHh-----CCCCEEEECCC-CHHHHHHHHHcC
Confidence 567777888999984 22222110 00 000 013467777777655 34555554 45 5677765 589
Q ss_pred CCEEeeCHHHHH
Q psy10967 166 CDLMTIGPKLLE 177 (199)
Q Consensus 166 aDaVTIpP~VLe 177 (199)
+|.+.++..++.
T Consensus 172 a~~i~~g~~i~~ 183 (196)
T cd00564 172 ADGVAVISAITG 183 (196)
T ss_pred CCEEEEehHhhc
Confidence 999999988764
No 68
>PRK00208 thiG thiazole synthase; Reviewed
Probab=82.10 E-value=10 Score=34.11 Aligned_cols=95 Identities=8% Similarity=-0.019 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhhcCcccc-cch---hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHH
Q psy10967 66 NLRNEINAIKQNRHVSYATK-ATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYK 141 (199)
Q Consensus 66 ~~~~~l~aik~l~~~~~~~~-aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk 141 (199)
.+.+-++|-|.|-++|+.|. .+. ..+=-.+.+|+++|-|. |+.--- | +. ..+ .+.++.+.+.
T Consensus 108 d~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPl-g~pIGs-----g-~g---i~~--~~~i~~i~e~-- 173 (250)
T PRK00208 108 DPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPL-GAPIGS-----G-LG---LLN--PYNLRIIIEQ-- 173 (250)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC-CcCCCC-----C-CC---CCC--HHHHHHHHHh--
Confidence 34455669999999999998 554 33333446799999661 111100 1 00 001 2344444443
Q ss_pred hcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 142 KFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 142 ~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
-+ -.-|..|.+.+++|+.. ..|||.|.+.-.+.
T Consensus 174 -~~-vpVIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 174 -AD-VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred -cC-CeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 22 35788899999999996 79999999987765
No 69
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=81.88 E-value=13 Score=34.48 Aligned_cols=79 Identities=13% Similarity=0.205 Sum_probs=55.5
Q ss_pred chhhhHHHHHcCCccccc--chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--
Q psy10967 87 TQTEDYLDVYNNNADGQD--ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA-- 162 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YISP--FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a-- 162 (199)
+..-+..|+.+|++.|.- --||-.|- + ...++.+.++.+... +.-+-|..+.+|+..+|.+
T Consensus 231 ~~~dA~~a~~~G~d~I~vsnhGGr~ld~-----~--------~~~~~~l~~i~~a~~--~~i~vi~dGGIr~g~Di~kaL 295 (351)
T cd04737 231 SPEDADVAINAGADGIWVSNHGGRQLDG-----G--------PASFDSLPEIAEAVN--HRVPIIFDSGVRRGEHVFKAL 295 (351)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCccCCC-----C--------chHHHHHHHHHHHhC--CCCeEEEECCCCCHHHHHHHH
Confidence 346788999999999865 33443321 1 234566666655442 2245677789999999995
Q ss_pred HhCCCEEeeCHHHHHHHh
Q psy10967 163 LAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 163 LAGaDaVTIpP~VLeqL~ 180 (199)
..|||.|-|+-.++..+.
T Consensus 296 alGA~~V~iGr~~l~~la 313 (351)
T cd04737 296 ASGADAVAVGRPVLYGLA 313 (351)
T ss_pred HcCCCEEEECHHHHHHHh
Confidence 699999999999988763
No 70
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=81.83 E-value=7.3 Score=38.08 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=75.3
Q ss_pred CCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcCcccccchhhhHHHHHcCCccccc---------
Q psy10967 34 DSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDVYNNNADGQD--------- 104 (199)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa~Qa~LA~~agA~YISP--------- 104 (199)
.....|-.+..||.+.+.+|+++...+- | .+|.-...|+. +-+...++||||+|.-
T Consensus 278 P~pHHDiysieDLaqlI~dLk~~~~~~~-I---------~VKlva~~~v~-----~iaagvakA~AD~I~IdG~~GGTGA 342 (485)
T COG0069 278 PPPHHDIYSIEDLAQLIKDLKEANPWAK-I---------SVKLVAEHGVG-----TIAAGVAKAGADVITIDGADGGTGA 342 (485)
T ss_pred CCCcccccCHHHHHHHHHHHHhcCCCCe-E---------EEEEecccchH-----HHHhhhhhccCCEEEEcCCCCcCCC
Confidence 3456677777888877777665532221 1 12222222332 2244478999999853
Q ss_pred --chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEE---EEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 105 --ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVV---MGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 105 --FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkI---LAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
.+- ++.| | .|=..-+.+.++.+..+|.+-+| .++.||+..+|.. +.|||.+-+.-.-+-
T Consensus 343 sP~~~-~~~~-----G--------iP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~li 408 (485)
T COG0069 343 SPLTS-IDHA-----G--------IPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALV 408 (485)
T ss_pred CcHhH-hhcC-----C--------chHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHH
Confidence 332 3555 4 56556688889999999986554 4567999999994 899999877665544
Q ss_pred HH
Q psy10967 178 EL 179 (199)
Q Consensus 178 qL 179 (199)
.|
T Consensus 409 a~ 410 (485)
T COG0069 409 AL 410 (485)
T ss_pred Hh
Confidence 43
No 71
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=80.70 E-value=14 Score=34.88 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=60.9
Q ss_pred cchhhhHHHHHcCCccccc--chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH-
Q psy10967 86 ATQTEDYLDVYNNNADGQD--ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA- 162 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YISP--FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a- 162 (199)
.|...+..|+.+|++.|-- -=||..|. + -+.+.++.++.+.+.. --+-++.+.+|+-.+|..
T Consensus 262 ~~~~dA~~a~~~G~d~I~vsnhGGr~~d~-----~--------~~t~~~L~ei~~~~~~--~~~vi~dGGIr~G~Dv~KA 326 (383)
T cd03332 262 LHPDDARRAVEAGVDGVVVSNHGGRQVDG-----S--------IAALDALPEIVEAVGD--RLTVLFDSGVRTGADIMKA 326 (383)
T ss_pred CCHHHHHHHHHCCCCEEEEcCCCCcCCCC-----C--------cCHHHHHHHHHHHhcC--CCeEEEeCCcCcHHHHHHH
Confidence 3457789999999998543 33444443 2 4667888888877643 256888899999999996
Q ss_pred -HhCCCEEeeCHHHHHHHh
Q psy10967 163 -LAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 163 -LAGaDaVTIpP~VLeqL~ 180 (199)
..|||+|-|+-.++..+.
T Consensus 327 LaLGA~~v~iGr~~l~~l~ 345 (383)
T cd03332 327 LALGAKAVLIGRPYAYGLA 345 (383)
T ss_pred HHcCCCEEEEcHHHHHHHH
Confidence 699999999999998875
No 72
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.52 E-value=10 Score=31.50 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=50.0
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.++-.+.++|++||.- .++ .- .|... ....+..+.++++.+.+ + ...+.+..+++++++.+ .+|+
T Consensus 113 ~~~~~~~~~gad~i~~-~~~-~~-----~G~~~--~~~~~~~~~i~~i~~~~---~-~Pvi~~GGI~~~~~v~~~l~~Ga 179 (236)
T cd04730 113 EEARKAEAAGADALVA-QGA-EA-----GGHRG--TFDIGTFALVPEVRDAV---D-IPVIAAGGIADGRGIAAALALGA 179 (236)
T ss_pred HHHHHHHHcCCCEEEE-eCc-CC-----CCCCC--ccccCHHHHHHHHHHHh---C-CCEEEECCCCCHHHHHHHHHcCC
Confidence 5566677899999863 232 10 02110 11135677777776554 2 46778889999888886 5899
Q ss_pred CEEeeCHHHHHHH
Q psy10967 167 DLMTIGPKLLEEL 179 (199)
Q Consensus 167 DaVTIpP~VLeqL 179 (199)
|.|-|+-.++...
T Consensus 180 dgV~vgS~l~~~~ 192 (236)
T cd04730 180 DGVQMGTRFLATE 192 (236)
T ss_pred cEEEEchhhhcCc
Confidence 9999986665443
No 73
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.45 E-value=8.4 Score=34.69 Aligned_cols=81 Identities=9% Similarity=0.003 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhcCccccc---chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcC
Q psy10967 68 RNEINAIKQNRHVSYATKA---TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFG 144 (199)
Q Consensus 68 ~~~l~aik~l~~~~~~~~a---Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~g 144 (199)
.+.++++|... .+..+-. |..|+..|+.+|||||. +|++ |.+.++++.+..+.
T Consensus 177 ~~av~~~r~~~-~~~~I~VEv~tleea~eA~~~gaD~I~-----LD~~----------------~~e~l~~~v~~~~~-- 232 (277)
T PRK05742 177 AQAVAAAHRIA-PGKPVEVEVESLDELRQALAAGADIVM-----LDEL----------------SLDDMREAVRLTAG-- 232 (277)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHcCCCEEE-----ECCC----------------CHHHHHHHHHHhCC--
Confidence 34455555542 1222332 33999999999999993 3444 56778887776531
Q ss_pred CceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 145 YKTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 145 ykTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+..+.|..==|.+.+.+ .+|+|.+.++.
T Consensus 233 -~i~leAsGGIt~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 233 -RAKLEASGGINESTLRVIAETGVDYISIGA 262 (277)
T ss_pred -CCcEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 34455443225666664 69999999885
No 74
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=80.26 E-value=1.6 Score=37.47 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=56.3
Q ss_pred HHHHhHHHHHHHH---HHHHHHHHHHhhhhc------CcccccchhhhHHHHHcCCccc-ccchhhhhhhcccccCCCCC
Q psy10967 53 LQRESEEKNKIIE---NLRNEINAIKQNRHV------SYATKATQTEDYLDVYNNNADG-QDENAKHLVRYVANTGTKTY 122 (199)
Q Consensus 53 ~~~~~~~~~~~~~---~~~~~l~aik~l~~~------~~~~~aTa~Qa~LA~~agA~YI-SPFVGRIdDwykk~~G~~~~ 122 (199)
.+...+.|+++|| +-.+.+++|+.++++ |.-|--|..|+-.|+.|||+|+ || +
T Consensus 26 ~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP-------------~---- 88 (196)
T PF01081_consen 26 AEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP-------------G---- 88 (196)
T ss_dssp HHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES-------------S----
T ss_pred HHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC-------------C----
Confidence 3445677777765 223346677766664 4455555599999999999995 56 1
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC-------HHHHHHHh
Q psy10967 123 APTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG-------PKLLEELE 180 (199)
Q Consensus 123 ~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp-------P~VLeqL~ 180 (199)
.+ .++.++-++++.. ++ -..-++.+|.. .+||++|=+- |+.++.|.
T Consensus 89 ----~~-----~~v~~~~~~~~i~--~i-PG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~ 143 (196)
T PF01081_consen 89 ----FD-----PEVIEYAREYGIP--YI-PGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALR 143 (196)
T ss_dssp -----------HHHHHHHHHHTSE--EE-EEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHH
T ss_pred ----CC-----HHHHHHHHHcCCc--cc-CCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHh
Confidence 11 4555555555532 23 34456777774 6888887553 45666654
No 75
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=79.87 E-value=11 Score=33.13 Aligned_cols=107 Identities=12% Similarity=0.108 Sum_probs=65.7
Q ss_pred HHHHHhHHHHHHH---------HHHHHHHHHHHhhhhcCccccc---chhhhHHHHHcCCcccccchhhhhhhcccccCC
Q psy10967 52 QLQRESEEKNKII---------ENLRNEINAIKQNRHVSYATKA---TQTEDYLDVYNNNADGQDENAKHLVRYVANTGT 119 (199)
Q Consensus 52 ~~~~~~~~~~~~~---------~~~~~~l~aik~l~~~~~~~~a---Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~ 119 (199)
|.....+.|-.+| ++|++-++..+.+ |..+.+ |..++-.|..+|+++|..- +|=...
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~l---Gl~~lvevh~~~E~~~A~~~gadiIgin-~rdl~~------- 193 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSL---GLDVLVEVHDEEELERALKLGAPLIGIN-NRNLKT------- 193 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHHcCCCEEEEC-CCCccc-------
Confidence 5555555553322 3455444455444 655432 3356667889999998842 221111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 120 KTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 120 ~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
. .+..+.+.++...+. +....|-.+.+.+++++.. .+|+|.+.|+-.+.+
T Consensus 194 -----~-~~d~~~~~~l~~~~p--~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 194 -----F-EVDLETTERLAPLIP--SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred -----c-cCCHHHHHHHHHhCC--CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 1 233666777666542 2225677799999999986 689999999987753
No 76
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=79.75 E-value=11 Score=34.55 Aligned_cols=85 Identities=9% Similarity=-0.002 Sum_probs=54.8
Q ss_pred hhhHHHHHcCCccccc----chhhhhh-------h---cccccCCCCC-----CCCCCChHHHHHHHHHHHHhcCCceE-
Q psy10967 89 TEDYLDVYNNNADGQD----ENAKHLV-------R---YVANTGTKTY-----APTEDPGVVSVTKIYNYYKKFGYKTV- 148 (199)
Q Consensus 89 ~Qa~LA~~agA~YISP----FVGRIdD-------w---ykk~~G~~~~-----~~~~ddGV~vVk~I~~~yk~~gykTk- 148 (199)
-+|+-|+..|+|+|+. |-|-+-. . .+.-.|-.+. .....+|.++++++.+.. ..+.-
T Consensus 123 eEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~---~iPVV~ 199 (283)
T cd04727 123 GEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG---RLPVVN 199 (283)
T ss_pred HHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc---CCCeEE
Confidence 8999999999999988 3332000 0 0000011100 112468899999988743 24433
Q ss_pred EEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 149 VMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 149 ILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
+--+.+.+++++.. .+|||.+.|.-.++
T Consensus 200 iAeGGI~Tpena~~v~e~GAdgVaVGSAI~ 229 (283)
T cd04727 200 FAAGGVATPADAALMMQLGADGVFVGSGIF 229 (283)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEcHHhh
Confidence 36777999999985 69999999988775
No 77
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=79.22 E-value=13 Score=35.96 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=60.0
Q ss_pred HHHhhhhcCcccccchhhhHHHHHcC-CcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHH---HH-HhcCCce
Q psy10967 73 AIKQNRHVSYATKATQTEDYLDVYNN-NADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYN---YY-KKFGYKT 147 (199)
Q Consensus 73 aik~l~~~~~~~~aTa~Qa~LA~~ag-A~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~---~y-k~~gykT 147 (199)
-|+.|++.|+- |..||-+|.+.| ||.|.- + .|- .|++ ...+...++..|.+ .+ ++++|..
T Consensus 159 ~v~~L~~~G~i---t~eEA~~a~~~g~aD~Ivv--e-~EA-----GGHt----g~~~~~~Llp~i~~lrd~v~~~~~y~~ 223 (444)
T TIGR02814 159 ILQKLLAEGRI---TREEAELARRVPVADDICV--E-ADS-----GGHT----DNRPLVVLLPAIIRLRDTLMRRYGYRK 223 (444)
T ss_pred HHHHHHHcCCC---CHHHHHHHHhCCCCcEEEE--e-ccC-----CCCC----CCCcHHHHHHHHHHHHHHHhhcccCCC
Confidence 45678888877 789999999999 577733 3 221 1321 23456677777753 33 4456654
Q ss_pred --EEEEc-ccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 148 --VVMGA-SFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 148 --kILAA-SFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
.|+|| .+-+++++.+ ..|||.|-++-.++
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ 257 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence 36655 8999999997 69999998875543
No 78
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=79.20 E-value=8.8 Score=35.96 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=58.4
Q ss_pred Cccccc----chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHH----HHHhcC--CceEEE
Q psy10967 81 SYATKA----TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYN----YYKKFG--YKTVVM 150 (199)
Q Consensus 81 ~~~~~a----Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~----~yk~~g--ykTkIL 150 (199)
++.+-+ |...+.-+.++|||.|. +||---.. + +.......|=...|.++.. +++..| +-.-|-
T Consensus 188 ~IPVI~G~V~t~e~A~~~~~aGaDgV~--~G~gg~~~----~-~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIA 260 (369)
T TIGR01304 188 DVPVIAGGVNDYTTALHLMRTGAAGVI--VGPGGANT----T-RLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIA 260 (369)
T ss_pred CCCEEEeCCCCHHHHHHHHHcCCCEEE--ECCCCCcc----c-ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 455543 33667777789999987 66532110 0 0011111333335555543 455555 567888
Q ss_pred EcccCCHhhHHH--HhCCCEEeeCHHHHHHH
Q psy10967 151 GASFRNTGEILA--LAGCDLMTIGPKLLEEL 179 (199)
Q Consensus 151 AASFRNv~QV~a--LAGaDaVTIpP~VLeqL 179 (199)
++.+++..+|.+ .+|||.|.++-.+....
T Consensus 261 dGGI~tg~di~kAlAlGAdaV~iGt~~a~a~ 291 (369)
T TIGR01304 261 DGGIETSGDLVKAIACGADAVVLGSPLARAA 291 (369)
T ss_pred eCCCCCHHHHHHHHHcCCCEeeeHHHHHhhh
Confidence 899999999996 69999999998887654
No 79
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.93 E-value=12 Score=34.15 Aligned_cols=64 Identities=8% Similarity=-0.118 Sum_probs=51.6
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.|+.-|+.+|||.|.- ||+ . .+.+++....++..+-+..+.|+.==|.+-|.+ ..|+
T Consensus 210 ~ea~eal~~gaDiI~L-----Dnm--------------~--~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGv 268 (289)
T PRK07896 210 EQLDEVLAEGAELVLL-----DNF--------------P--VWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGV 268 (289)
T ss_pred HHHHHHHHcCCCEEEe-----CCC--------------C--HHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCC
Confidence 8999999999998864 766 2 688888888887776677777776677788875 7899
Q ss_pred CEEeeCH
Q psy10967 167 DLMTIGP 173 (199)
Q Consensus 167 DaVTIpP 173 (199)
|++.++.
T Consensus 269 D~Is~ga 275 (289)
T PRK07896 269 DYLAVGA 275 (289)
T ss_pred CEEEeCh
Confidence 9998885
No 80
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=78.58 E-value=13 Score=33.50 Aligned_cols=87 Identities=17% Similarity=0.045 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhh-cCccccc-chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 66 NLRNEINAIKQNRH-VSYATKA-TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 66 ~~~~~l~aik~l~~-~~~~~~a-Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
.+++-++++|+... .-|-|-+ |..|+.-|+.+|+|.|.- |++ ..+.+++..+.++..
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI~l-----Dn~----------------~~e~l~~~v~~l~~~ 232 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEADTIEQALTVLQASPDILQL-----DKF----------------TPQQLHHLHERLKFF 232 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEEEE-----CCC----------------CHHHHHHHHHHHhcc
Confidence 45555555555311 1133322 349999999999998865 543 257778888888766
Q ss_pred CCceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 144 GYKTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 144 gykTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+.+..+-++.==|++.+.+ ..|+|++.++.
T Consensus 233 ~~~~~leasGGI~~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 233 DHIPTLAAAGGINPENIADYIEAGIDLFITSA 264 (277)
T ss_pred CCCEEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 6678888888888888885 78999987764
No 81
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=78.22 E-value=8.5 Score=32.36 Aligned_cols=133 Identities=12% Similarity=0.072 Sum_probs=81.9
Q ss_pred CCCcccccchHHHHHHHHHHHHHhHHHHHHHHH-----H------HHHHHHHHhhhhcC--cccccch----hhhHHHHH
Q psy10967 34 DSEYSDERNLQDLKEKVLQLQRESEEKNKIIEN-----L------RNEINAIKQNRHVS--YATKATQ----TEDYLDVY 96 (199)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~l~aik~l~~~~--~~~~aTa----~Qa~LA~~ 96 (199)
|.+++....+ ...+|+.=+....+.|...||- . ......|+.+++.+ ..+.+-. ...=.|.+
T Consensus 7 DG~q~~~~~~-s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~ 85 (265)
T cd03174 7 DGLQSEGATF-STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE 85 (265)
T ss_pred CcccCCCCCC-CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh
Confidence 5555555555 5556665566667777776652 2 45566777777776 3433211 44566778
Q ss_pred cCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE-ccc---CCHhhHHH------HhCC
Q psy10967 97 NNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG-ASF---RNTGEILA------LAGC 166 (199)
Q Consensus 97 agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA-ASF---RNv~QV~a------LAGa 166 (199)
+|++.|..++.--+..-+++-+ .....-++.+.+..+..+.+|++..+-. -++ .|++++.+ .+|+
T Consensus 86 ~g~~~i~i~~~~s~~~~~~~~~-----~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 160 (265)
T cd03174 86 AGVDEVRIFDSASETHSRKNLN-----KSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGA 160 (265)
T ss_pred CCcCEEEEEEecCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCC
Confidence 8988888877544311111111 0011246777888888899999887776 455 46666652 5899
Q ss_pred CEEeeC
Q psy10967 167 DLMTIG 172 (199)
Q Consensus 167 DaVTIp 172 (199)
|.+.++
T Consensus 161 ~~i~l~ 166 (265)
T cd03174 161 DEISLK 166 (265)
T ss_pred CEEEec
Confidence 998875
No 82
>PLN02979 glycolate oxidase
Probab=78.21 E-value=17 Score=34.32 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=58.5
Q ss_pred chhhhHHHHHcCCccc--ccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--
Q psy10967 87 TQTEDYLDVYNNNADG--QDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA-- 162 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YI--SPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a-- 162 (199)
+...+..|+.+|++.| |--=||-.|| + -+.+.++-++.+.+.. --+-++...+|+-.+|..
T Consensus 233 ~~~dA~~a~~~Gvd~I~VsnhGGrqld~-----~--------p~t~~~L~ei~~~~~~--~~~Vi~dGGIr~G~Di~KAL 297 (366)
T PLN02979 233 TGEDARIAIQAGAAGIIVSNHGARQLDY-----V--------PATISALEEVVKATQG--RIPVFLDGGVRRGTDVFKAL 297 (366)
T ss_pred CHHHHHHHHhcCCCEEEECCCCcCCCCC-----c--------hhHHHHHHHHHHHhCC--CCeEEEeCCcCcHHHHHHHH
Confidence 4577899999999985 4444555444 2 2456777777665542 245777889999999995
Q ss_pred HhCCCEEeeCHHHHHHHh
Q psy10967 163 LAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 163 LAGaDaVTIpP~VLeqL~ 180 (199)
..|||+|-|+-.++..+.
T Consensus 298 ALGAdaV~iGrp~L~~la 315 (366)
T PLN02979 298 ALGASGIFIGRPVVFSLA 315 (366)
T ss_pred HcCCCEEEEcHHHHHHHH
Confidence 699999999999997765
No 83
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=78.18 E-value=8.6 Score=34.28 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=52.6
Q ss_pred hhhhHHHHHcCCccccc-chhhhhhhcccccCCCCCC-CCCCChHHHHHHHHHHHHhcCCceEEEE-cccCCHhhHHH--
Q psy10967 88 QTEDYLDVYNNNADGQD-ENAKHLVRYVANTGTKTYA-PTEDPGVVSVTKIYNYYKKFGYKTVVMG-ASFRNTGEILA-- 162 (199)
Q Consensus 88 a~Qa~LA~~agA~YISP-FVGRIdDwykk~~G~~~~~-~~~ddGV~vVk~I~~~yk~~gykTkILA-ASFRNv~QV~a-- 162 (199)
...++-|.++|+|+|.- ..|.-+ +. ...+|-.++++++.+ .++.||| +-|.+|++...
T Consensus 137 ~ee~l~a~~~G~D~IGTTLsGYT~-----------~~~~~~~pDf~lvk~l~~------~~~~vIAEGr~~tP~~Ak~a~ 199 (229)
T COG3010 137 FEEGLNAHKLGFDIIGTTLSGYTG-----------YTEKPTEPDFQLVKQLSD------AGCRVIAEGRYNTPEQAKKAI 199 (229)
T ss_pred HHHHHHHHHcCCcEEecccccccC-----------CCCCCCCCcHHHHHHHHh------CCCeEEeeCCCCCHHHHHHHH
Confidence 38999999999998865 222211 11 134678999999887 4677776 67999999996
Q ss_pred HhCCCEEeeCHHH
Q psy10967 163 LAGCDLMTIGPKL 175 (199)
Q Consensus 163 LAGaDaVTIpP~V 175 (199)
..||++|||+-.+
T Consensus 200 ~~Ga~aVvVGsAI 212 (229)
T COG3010 200 EIGADAVVVGSAI 212 (229)
T ss_pred HhCCeEEEECccc
Confidence 7999999998554
No 84
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=78.01 E-value=8.3 Score=31.66 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=62.1
Q ss_pred HHHHHhHHHHHHH----H----HHHHHHHHHHhhhhcCcccc------cch-hhhHHHHHcCCcccccchhhhhhhcccc
Q psy10967 52 QLQRESEEKNKII----E----NLRNEINAIKQNRHVSYATK------ATQ-TEDYLDVYNNNADGQDENAKHLVRYVAN 116 (199)
Q Consensus 52 ~~~~~~~~~~~~~----~----~~~~~l~aik~l~~~~~~~~------aTa-~Qa~LA~~agA~YISPFVGRIdDwykk~ 116 (199)
|.+.+.+.|-..| + ++.+ .++..++.|+.+- .|- .++..|...|++||..+-|.-.+-+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~---~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~--- 141 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKG---AVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAK--- 141 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHH---HHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccC---
Confidence 4555666666655 2 2332 4444455566553 221 5666777889999987543322110
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEE-EcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 117 TGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVM-GASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 117 ~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkIL-AASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
+ ..+++.++++.+.+.. ..|+ .+.+ |.+.+.+ .+|+|.+.++-.++.
T Consensus 142 -~--------~~~~~~i~~l~~~~~~----~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 142 -G--------QNPFEDLQTILKLVKE----ARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred -C--------CCCHHHHHHHHHhcCC----CcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 1 2456667777766542 3555 5677 5555554 589999999876653
No 85
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=77.15 E-value=5.3 Score=37.31 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=48.9
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC-ceEEEEcccC------------
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMGASFR------------ 155 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy-kTkILAASFR------------ 155 (199)
.||..-++|||+.|+| .|+. || -|..|.+.++..|| +|-||+=|-|
T Consensus 154 k~Avs~AeAGAdivAP-----SdMM--------------DG--rV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdA 212 (330)
T COG0113 154 KQAVSQAEAGADIVAP-----SDMM--------------DG--RVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDA 212 (330)
T ss_pred HHHHHHHHcCCCeecc-----cccc--------------cc--hHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHH
Confidence 7899999999999999 6652 33 35667777778776 7788864322
Q ss_pred ------------------CHhhHHH------HhCCCEEeeCHHH
Q psy10967 156 ------------------NTGEILA------LAGCDLMTIGPKL 175 (199)
Q Consensus 156 ------------------Nv~QV~a------LAGaDaVTIpP~V 175 (199)
|..+.+. .-|||.+-|-|.+
T Consensus 213 a~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKPal 256 (330)
T COG0113 213 AGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKPAL 256 (330)
T ss_pred hhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcCCc
Confidence 6666662 4799999998865
No 86
>PRK07695 transcriptional regulator TenI; Provisional
Probab=76.91 E-value=15 Score=30.38 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=45.5
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-ccCCHhhHHH--HhC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAG 165 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-SFRNv~QV~a--LAG 165 (199)
.|+..|..+|++||. +|++-+-. .+++ ....|++.++++...+ +..|+|. .+ |++++.+ ..|
T Consensus 106 e~a~~a~~~Gadyi~--~g~v~~t~-~k~~------~~~~g~~~l~~~~~~~-----~ipvia~GGI-~~~~~~~~~~~G 170 (201)
T PRK07695 106 EEAIQAEKNGADYVV--YGHVFPTD-CKKG------VPARGLEELSDIARAL-----SIPVIAIGGI-TPENTRDVLAAG 170 (201)
T ss_pred HHHHHHHHcCCCEEE--ECCCCCCC-CCCC------CCCCCHHHHHHHHHhC-----CCCEEEEcCC-CHHHHHHHHHcC
Confidence 677778899999993 33332210 0011 1134777888776543 3444444 35 8888775 699
Q ss_pred CCEEeeCHHHH
Q psy10967 166 CDLMTIGPKLL 176 (199)
Q Consensus 166 aDaVTIpP~VL 176 (199)
+|.+.+.-.+.
T Consensus 171 a~gvav~s~i~ 181 (201)
T PRK07695 171 VSGIAVMSGIF 181 (201)
T ss_pred CCEEEEEHHHh
Confidence 99998887776
No 87
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=76.83 E-value=18 Score=32.04 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=47.2
Q ss_pred chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--Hh
Q psy10967 87 TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LA 164 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LA 164 (199)
|..|+..|+.+|||||.- ++. +.+.++++.+.++.. .+..|.|..==|++.+.+ .+
T Consensus 190 t~eea~~A~~~gaD~I~l-----d~~----------------~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~ 247 (269)
T cd01568 190 TLEEAEEALEAGADIIML-----DNM----------------SPEELKEAVKLLKGL-PRVLLEASGGITLENIRAYAET 247 (269)
T ss_pred CHHHHHHHHHcCCCEEEE-----CCC----------------CHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHc
Confidence 458999999999999976 443 236677777777654 456677666566777764 69
Q ss_pred CCCEEeeC
Q psy10967 165 GCDLMTIG 172 (199)
Q Consensus 165 GaDaVTIp 172 (199)
|+|.+.++
T Consensus 248 Gad~Isvg 255 (269)
T cd01568 248 GVDVISTG 255 (269)
T ss_pred CCCEEEEc
Confidence 99999876
No 88
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=75.67 E-value=17 Score=32.77 Aligned_cols=95 Identities=8% Similarity=-0.034 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhhhcCcccc-cch---hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHH
Q psy10967 66 NLRNEINAIKQNRHVSYATK-ATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYK 141 (199)
Q Consensus 66 ~~~~~l~aik~l~~~~~~~~-aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk 141 (199)
.+.+-++|-|.|-++|+.|. .+. ..+=-...+|+++|-|.=.=|. - +.| ..-.+.|+.+.+.
T Consensus 108 d~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIG-s---g~G--------i~~~~~I~~I~e~-- 173 (248)
T cd04728 108 DPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIG-S---GQG--------LLNPYNLRIIIER-- 173 (248)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCC-C---CCC--------CCCHHHHHHHHHh--
Confidence 45556669999999999998 444 3344445679999966211111 0 001 1113555544432
Q ss_pred hcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 142 KFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 142 ~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
.+ -.-|..|.+.+++|+.. ..|||.|.+.-.+.
T Consensus 174 -~~-vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 174 -AD-VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred -CC-CcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 22 24677788999999996 79999999987765
No 89
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=75.09 E-value=12 Score=30.81 Aligned_cols=72 Identities=13% Similarity=-0.041 Sum_probs=51.1
Q ss_pred chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--Hh
Q psy10967 87 TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LA 164 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LA 164 (199)
|-.|+..|..+|||||..|- . . .-|.+.++.+...+. +..++|..=-|.+.+.+ .+
T Consensus 106 t~~e~~~A~~~Gad~i~~~p-----~-----~--------~~g~~~~~~l~~~~~----~~p~~a~GGI~~~n~~~~~~~ 163 (190)
T cd00452 106 TPTEIMQALELGADIVKLFP-----A-----E--------AVGPAYIKALKGPFP----QVRFMPTGGVSLDNAAEWLAA 163 (190)
T ss_pred CHHHHHHHHHCCCCEEEEcC-----C-----c--------ccCHHHHHHHHhhCC----CCeEEEeCCCCHHHHHHHHHC
Confidence 44889999999999999642 1 1 126777777754432 35666663338888886 68
Q ss_pred CCCEEeeCHHHHHHHh
Q psy10967 165 GCDLMTIGPKLLEELE 180 (199)
Q Consensus 165 GaDaVTIpP~VLeqL~ 180 (199)
|+|.+.++-.+..++.
T Consensus 164 G~~~v~v~s~i~~~~~ 179 (190)
T cd00452 164 GVVAVGGGSLLPKDAV 179 (190)
T ss_pred CCEEEEEchhcchhhh
Confidence 9999999988886554
No 90
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=75.06 E-value=14 Score=30.77 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=53.4
Q ss_pred hhcCccc---ccchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEccc
Q psy10967 78 RHVSYAT---KATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASF 154 (199)
Q Consensus 78 ~~~~~~~---~aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASF 154 (199)
+..|..+ ..|..++..+...|++|+.-- +|=... ..++++.++++.+.+. .-...+-.+.+
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t-~~~~~~-------------~~~~~~~~~~l~~~~~--~~~pvia~gGI 181 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALALGAKIIGIN-NRDLKT-------------FEVDLNTTERLAPLIP--KDVILVSESGI 181 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHcCCCEEEEe-CCCccc-------------cCcCHHHHHHHHHhCC--CCCEEEEEcCC
Confidence 4446654 234466777889999998632 211011 1345666666655432 11344556899
Q ss_pred CCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 155 RNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 155 RNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
.+++++.+ .+|+|.+.|+-.+++
T Consensus 182 ~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 182 STPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHcC
Confidence 99999996 689999999988764
No 91
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.00 E-value=16 Score=32.89 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhh----cCcccccchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHh
Q psy10967 67 LRNEINAIKQNRH----VSYATKATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKK 142 (199)
Q Consensus 67 ~~~~l~aik~l~~----~~~~~~aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~ 142 (199)
+++.++.+|+.-. -|+.+. |..|+..|+.+|||||.- |++ |++.++++.+..+
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~-tleea~~A~~~gaDyI~l-----D~~----------------~~e~l~~~~~~~~- 230 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETE-TEEQVREAVAAGADIIMF-----DNR----------------TPDEIREFVKLVP- 230 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeC-CHHHHHHHHHcCCCEEEE-----CCC----------------CHHHHHHHHHhcC-
Confidence 5555556666643 234332 448999999999999955 333 5677777777653
Q ss_pred cCCceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 143 FGYKTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 143 ~gykTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
.+..+.|..==|.+.+.+ .+|+|.+.++.
T Consensus 231 --~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 231 --SAIVTEASGGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred --CCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 234444443336777764 69999999885
No 92
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=74.99 E-value=20 Score=29.02 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHhcCCceEE-EEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVV-MGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkI-LAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
+.+.+.++++.+....++++..| +++.++. +++.+ .+|+|.+.++-.+++
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 147 PEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 45677788888887766655555 5678885 88876 489999999988763
No 93
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=74.96 E-value=14 Score=33.31 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCc-eEEEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 134 TKIYNYYKKFGYK-TVVMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 134 k~I~~~yk~~gyk-TkILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
+.+..+.+.-+-+ ..|-.+.+++.+++.+ .+|||.|-|.-.++
T Consensus 268 ~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~ 313 (327)
T cd04738 268 EVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLV 313 (327)
T ss_pred HHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHH
Confidence 3333333333323 3455778999999997 68999988775554
No 94
>PRK04302 triosephosphate isomerase; Provisional
Probab=74.93 E-value=18 Score=30.70 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCce-EEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 130 VVSVTKIYNYYKKFGYKT-VVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykT-kILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
.+.+.++.+.+++..-++ .+.++|+++++++.. ..|+|.+.|+-.+++
T Consensus 157 ~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 157 PEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred HHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhC
Confidence 355777778888754334 455899999999996 499999999988764
No 95
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=74.51 E-value=11 Score=34.36 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCce-EEEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 135 KIYNYYKKFGYKT-VVMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 135 ~I~~~yk~~gykT-kILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
.+..+.+..+-+. -|-.+.+++.+++.+ .+|||+|-|.-.++
T Consensus 278 ~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~ 322 (344)
T PRK05286 278 VIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLI 322 (344)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444444433234 444789999999997 69999987765543
No 96
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=74.13 E-value=32 Score=29.78 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=49.5
Q ss_pred hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCC--HhhHHHHhCCCE
Q psy10967 91 DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRN--TGEILALAGCDL 168 (199)
Q Consensus 91 a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRN--v~QV~aLAGaDa 168 (199)
.|+|-..|-..+++. + . + ..|+.+-+.++.+.++.++.++-+.-..+.+ .+.+.+..|+..
T Consensus 181 ~Y~~~~ygl~~~~~~-~--~-------~-------~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v 243 (266)
T cd01018 181 GYFARDYGLTQIPIE-E--E-------G-------KEPSPADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKV 243 (266)
T ss_pred HHHHHHcCCEEEecC-C--C-------C-------CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeE
Confidence 788888888877541 0 1 2 4789999999999999999998777665543 344445799999
Q ss_pred EeeCH
Q psy10967 169 MTIGP 173 (199)
Q Consensus 169 VTIpP 173 (199)
+++.|
T Consensus 244 ~~ld~ 248 (266)
T cd01018 244 VTIDP 248 (266)
T ss_pred EEeCC
Confidence 88864
No 97
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=73.61 E-value=14 Score=32.53 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhhcCcccccch------hhhHHHHHcCCcccccchhhhhhhcc
Q psy10967 46 LKEKVLQLQRESEEKNKIIEN-----LRNEINAIKQNRHVSYATKATQ------TEDYLDVYNNNADGQDENAKHLVRYV 114 (199)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~-----~~~~l~aik~l~~~~~~~~aTa------~Qa~LA~~agA~YISPFVGRIdDwyk 114 (199)
..+|+-=+++..+.|++.||- -.....+++.+.+.+.+....+ ...=.|.++|++.|.-|+. ..|++.
T Consensus 21 ~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~-~S~~~~ 99 (262)
T cd07948 21 TEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDLVFG-TSPFLR 99 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEe-cCHHHH
Confidence 456676777888899888764 2333445555554443322222 3334677899998887663 222221
Q ss_pred cc-cCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE-cccCCH-hhHHH------HhCCCEEeeC
Q psy10967 115 AN-TGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG-ASFRNT-GEILA------LAGCDLMTIG 172 (199)
Q Consensus 115 k~-~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA-ASFRNv-~QV~a------LAGaDaVTIp 172 (199)
+. -+ ......++.+.++.++.+.+|+...+-. -+||.+ +.+.+ .+|+|.+.++
T Consensus 100 ~~~~~-----~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 100 EASHG-----KSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred HHHhC-----CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 11 01 0012457778888899999998876544 478876 44432 4799998765
No 98
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=73.51 E-value=26 Score=28.41 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=57.0
Q ss_pred HHHHhhhhcCccc----cc-chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCc
Q psy10967 72 NAIKQNRHVSYAT----KA-TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYK 146 (199)
Q Consensus 72 ~aik~l~~~~~~~----~a-Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gyk 146 (199)
++++.+++.|+.+ +. |..+.+.+...+++|+. |..+ +- |..+ ....+.+.+-++++.++..+.+.+
T Consensus 95 ~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~-~~~~-~~------g~tg-~~~~~~~~~~i~~i~~~~~~~~~~ 165 (210)
T TIGR01163 95 RLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVL-LMSV-NP------GFGG-QKFIPDTLEKIREVRKMIDENGLS 165 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEE-EEEE-cC------CCCc-ccccHHHHHHHHHHHHHHHhcCCC
Confidence 3455555555542 12 23566777777888864 2221 10 1000 011245777788888887766554
Q ss_pred eEE-EEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 147 TVV-MGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 147 TkI-LAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
..| +++.++ ++.+.+ ..|+|.+.++-.++
T Consensus 166 ~~i~v~GGI~-~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 166 ILIEVDGGVN-DDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred ceEEEECCcC-HHHHHHHHHcCCCEEEEChHHh
Confidence 445 556785 688876 58999999997776
No 99
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=72.42 E-value=24 Score=31.45 Aligned_cols=82 Identities=6% Similarity=-0.009 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhh----cCcccccchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHh
Q psy10967 67 LRNEINAIKQNRH----VSYATKATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKK 142 (199)
Q Consensus 67 ~~~~l~aik~l~~----~~~~~~aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~ 142 (199)
+...++.+|+.-. -|+.+. |..|+..|+.+|||||.- +++ +.+.++++.+.++.
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~-t~eea~~A~~~gaDyI~l-----d~~----------------~~e~lk~~v~~~~~ 221 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE-SLEEAEEAAEAGADIIML-----DNM----------------KPEEIKEAVQLLKG 221 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC-CHHHHHHHHHcCCCEEEE-----CCC----------------CHHHHHHHHHHhcC
Confidence 3334445555432 233332 449999999999999875 443 34667777776543
Q ss_pred cCCceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 143 FGYKTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 143 ~gykTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+ ..|.|..==|.+.+.+ .+|+|.+.++.
T Consensus 222 ~---ipi~AsGGI~~~ni~~~a~~Gvd~Isvga 251 (265)
T TIGR00078 222 R---VLLEASGGITLDNLEEYAETGVDVISSGA 251 (265)
T ss_pred C---CcEEEECCCCHHHHHHHHHcCCCEEEeCH
Confidence 3 3344433236777765 69999998863
No 100
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.75 E-value=3 Score=36.41 Aligned_cols=56 Identities=4% Similarity=-0.115 Sum_probs=38.2
Q ss_pred HHHHHhHHHHHHHHHHH---HHHHHHHhhhh----------cCcccccchhhhHHHHHcCCccc-ccchh
Q psy10967 52 QLQRESEEKNKIIENLR---NEINAIKQNRH----------VSYATKATQTEDYLDVYNNNADG-QDENA 107 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~---~~l~aik~l~~----------~~~~~~aTa~Qa~LA~~agA~YI-SPFVG 107 (199)
......+.|+++||--- +.+++|+.|++ .|.-|--|..|+-.|+.+||+|+ ||.++
T Consensus 32 ~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~~ 101 (222)
T PRK07114 32 VIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLFN 101 (222)
T ss_pred HHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCCC
Confidence 34556778888887322 46777877752 34555555699999999999985 77433
No 101
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=70.68 E-value=38 Score=31.91 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=59.2
Q ss_pred chhhhHHHHHcCCccc--ccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--
Q psy10967 87 TQTEDYLDVYNNNADG--QDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA-- 162 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YI--SPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a-- 162 (199)
+...+..|+.+|++.| |-.=||-.|| + -+.+.++.++.+.+. +--.-++.+.+|+-.+|..
T Consensus 234 ~~~dA~~a~~~Gvd~I~VsnhGGrqld~-----~--------~~t~~~L~ei~~av~--~~~~vi~dGGIr~G~Dv~KAL 298 (367)
T PLN02493 234 TGEDARIAIQAGAAGIIVSNHGARQLDY-----V--------PATISALEEVVKATQ--GRIPVFLDGGVRRGTDVFKAL 298 (367)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCCCCC-----c--------hhHHHHHHHHHHHhC--CCCeEEEeCCcCcHHHHHHHH
Confidence 3477889999999975 4455555554 2 345777777776653 2245778899999999995
Q ss_pred HhCCCEEeeCHHHHHHHhc
Q psy10967 163 LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 163 LAGaDaVTIpP~VLeqL~~ 181 (199)
..|||+|-|+-.++..+..
T Consensus 299 ALGA~aV~iGr~~l~~l~~ 317 (367)
T PLN02493 299 ALGASGIFIGRPVVFSLAA 317 (367)
T ss_pred HcCCCEEEEcHHHHHHHHh
Confidence 6899999999999877653
No 102
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=70.33 E-value=18 Score=30.31 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=43.4
Q ss_pred cchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--H
Q psy10967 86 ATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--L 163 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--L 163 (199)
.+..|.-.|..+||++|.|-..-.. .|.-+.+.++.+..+++ ....++ +...+.+++.. .
T Consensus 76 ~~~~~v~~a~~aGad~I~~d~~~~~----------------~p~~~~~~~~i~~~~~~-~~i~vi-~~v~t~ee~~~a~~ 137 (221)
T PRK01130 76 PTLKEVDALAAAGADIIALDATLRP----------------RPDGETLAELVKRIKEY-PGQLLM-ADCSTLEEGLAAQK 137 (221)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCC----------------CCCCCCHHHHHHHHHhC-CCCeEE-EeCCCHHHHHHHHH
Confidence 3346889999999999998321110 01113445666666664 344455 56778888875 6
Q ss_pred hCCCEEee
Q psy10967 164 AGCDLMTI 171 (199)
Q Consensus 164 AGaDaVTI 171 (199)
+|+|++.+
T Consensus 138 ~G~d~i~~ 145 (221)
T PRK01130 138 LGFDFIGT 145 (221)
T ss_pred cCCCEEEc
Confidence 89999855
No 103
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=70.32 E-value=26 Score=32.37 Aligned_cols=101 Identities=10% Similarity=-0.002 Sum_probs=61.5
Q ss_pred HHHhhhhc-Ccccccch---hhhHHHHHcCCcccccc-----------hhhhhhh---cccccCCC-----CCCCCCCCh
Q psy10967 73 AIKQNRHV-SYATKATQ---TEDYLDVYNNNADGQDE-----------NAKHLVR---YVANTGTK-----TYAPTEDPG 129 (199)
Q Consensus 73 aik~l~~~-~~~~~aTa---~Qa~LA~~agA~YISPF-----------VGRIdDw---ykk~~G~~-----~~~~~~ddG 129 (199)
.+++.|++ +...-|-+ -+|+-|+..||++|..= |-.+... .+.-.|-. .+.....++
T Consensus 112 ~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~ 191 (293)
T PRK04180 112 EYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAP 191 (293)
T ss_pred HHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCC
Confidence 45555554 33332222 89999999999999986 1111110 00000110 011124688
Q ss_pred HHHHHHHHHHHHhcCCceE-EEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 130 VVSVTKIYNYYKKFGYKTV-VMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykTk-ILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
.++++++.+.. ..+.- +-.+.+.+++++.. .+|||.+.|.-.++
T Consensus 192 ~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 192 YELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred HHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhh
Confidence 99999988743 34432 36677999999985 69999999988875
No 104
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=69.98 E-value=31 Score=31.75 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=54.0
Q ss_pred hhhHHHHHcCCccccc----chhh-------hhhh---cccccCC------CCCCCCCCChHHHHHHHHHHHHhcCCceE
Q psy10967 89 TEDYLDVYNNNADGQD----ENAK-------HLVR---YVANTGT------KTYAPTEDPGVVSVTKIYNYYKKFGYKTV 148 (199)
Q Consensus 89 ~Qa~LA~~agA~YISP----FVGR-------IdDw---ykk~~G~------~~~~~~~ddGV~vVk~I~~~yk~~gykTk 148 (199)
-+|+-|+..||++|.. |-|- |..+ .+...+. ..+.....+|+++++++.+.. +.+.-
T Consensus 125 ~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~---~iPVV 201 (287)
T TIGR00343 125 GEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG---KLPVV 201 (287)
T ss_pred HHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC---CCCEE
Confidence 8899999999999987 3332 1000 0000000 011222468999999988732 23322
Q ss_pred -EEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 149 -VMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 149 -ILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
+-.+.+.+++++.. .+|||.|.|.-.++
T Consensus 202 ~fAiGGI~TPedAa~~melGAdGVaVGSaI~ 232 (287)
T TIGR00343 202 NFAAGGVATPADAALMMQLGADGVFVGSGIF 232 (287)
T ss_pred EeccCCCCCHHHHHHHHHcCCCEEEEhHHhh
Confidence 24677999999985 69999999988775
No 105
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=69.29 E-value=21 Score=32.71 Aligned_cols=61 Identities=7% Similarity=-0.056 Sum_probs=47.0
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.|+.-|+++|||.|.- |++ . .+.++++....+. ++.+.|+.==|.+.|.+ ..|+
T Consensus 219 eea~ea~~~gaDiI~L-----Dn~--------------s--~e~~~~av~~~~~---~~~ieaSGGI~~~ni~~yA~tGV 274 (296)
T PRK09016 219 DELDQALKAGADIIML-----DNF--------------T--TEQMREAVKRTNG---RALLEVSGNVTLETLREFAETGV 274 (296)
T ss_pred HHHHHHHHcCCCEEEe-----CCC--------------C--hHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHHhcCC
Confidence 9999999999998864 765 2 3777777776542 67777777667777775 7899
Q ss_pred CEEeeCH
Q psy10967 167 DLMTIGP 173 (199)
Q Consensus 167 DaVTIpP 173 (199)
|++.++.
T Consensus 275 D~Is~ga 281 (296)
T PRK09016 275 DFISVGA 281 (296)
T ss_pred CEEEeCc
Confidence 9988874
No 106
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=69.14 E-value=12 Score=34.55 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=52.1
Q ss_pred cchhhhHHHHHcCCcccc--cchhhhhhhcccccCCCCCCCCCCC--hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHH
Q psy10967 86 ATQTEDYLDVYNNNADGQ--DENAKHLVRYVANTGTKTYAPTEDP--GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEIL 161 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YIS--PFVGRIdDwykk~~G~~~~~~~~dd--GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~ 161 (199)
+|...+..++.+|+|.+- =--||+..--. ..| ...| ++..++++.+..+ ..-|--+.+|++.+|.
T Consensus 149 ~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~-~~g------~~~~~w~l~ai~~~~~~~~----ipVIAdGGI~~~~Di~ 217 (326)
T PRK05458 149 GTPEAVRELENAGADATKVGIGPGKVCITKI-KTG------FGTGGWQLAALRWCAKAAR----KPIIADGGIRTHGDIA 217 (326)
T ss_pred CCHHHHHHHHHcCcCEEEECCCCCccccccc-ccC------CCCCccHHHHHHHHHHHcC----CCEEEeCCCCCHHHHH
Confidence 366888999999999943 12244421100 001 1134 5666888876542 3466668899999999
Q ss_pred H--HhCCCEEeeCHHHH
Q psy10967 162 A--LAGCDLMTIGPKLL 176 (199)
Q Consensus 162 a--LAGaDaVTIpP~VL 176 (199)
. .+|||+|.++-.+.
T Consensus 218 KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 218 KSIRFGATMVMIGSLFA 234 (326)
T ss_pred HHHHhCCCEEEechhhc
Confidence 6 68999999996654
No 107
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=69.09 E-value=44 Score=31.44 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=57.7
Q ss_pred hhhHHHHHcCCccc--ccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--Hh
Q psy10967 89 TEDYLDVYNNNADG--QDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LA 164 (199)
Q Consensus 89 ~Qa~LA~~agA~YI--SPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LA 164 (199)
.-+..|+.+|++.| |--=||..|- + .+..+.+.++.+.+. +--.-|+-+.+|+..+|.. ..
T Consensus 240 eda~~a~~~Gvd~I~VS~HGGrq~~~-----~--------~a~~~~L~ei~~av~--~~i~vi~dGGIr~g~Dv~KaLal 304 (367)
T TIGR02708 240 EDADRALKAGASGIWVTNHGGRQLDG-----G--------PAAFDSLQEVAEAVD--KRVPIVFDSGVRRGQHVFKALAS 304 (367)
T ss_pred HHHHHHHHcCcCEEEECCcCccCCCC-----C--------CcHHHHHHHHHHHhC--CCCcEEeeCCcCCHHHHHHHHHc
Confidence 55788999999955 6666665542 2 234677777776542 2245777889999999995 69
Q ss_pred CCCEEeeCHHHHHHHhc
Q psy10967 165 GCDLMTIGPKLLEELEN 181 (199)
Q Consensus 165 GaDaVTIpP~VLeqL~~ 181 (199)
|||.|-|+-.++..|..
T Consensus 305 GAd~V~igR~~l~~la~ 321 (367)
T TIGR02708 305 GADLVALGRPVIYGLAL 321 (367)
T ss_pred CCCEEEEcHHHHHHHHh
Confidence 99999999999988754
No 108
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.87 E-value=22 Score=33.26 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=42.4
Q ss_pred hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCE
Q psy10967 91 DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDL 168 (199)
Q Consensus 91 a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDa 168 (199)
+-.++++|+++|.-.-...+.-|....+ + . .++.+.+++. +..|+++.+-+.+.+.. .+|||+
T Consensus 147 a~~l~eaGvd~I~vhgrt~~~~h~~~~~---------~-~---~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~aGAD~ 211 (368)
T PRK08649 147 APTVVEAGVDLFVIQGTVVSAEHVSKEG---------E-P---LNLKEFIYEL--DVPVIVGGCVTYTTALHLMRTGAAG 211 (368)
T ss_pred HHHHHHCCCCEEEEeccchhhhccCCcC---------C-H---HHHHHHHHHC--CCCEEEeCCCCHHHHHHHHHcCCCE
Confidence 3445699999998755444443311111 1 1 3344455554 57789888888888875 599999
Q ss_pred EeeC
Q psy10967 169 MTIG 172 (199)
Q Consensus 169 VTIp 172 (199)
|-++
T Consensus 212 V~VG 215 (368)
T PRK08649 212 VLVG 215 (368)
T ss_pred EEEC
Confidence 8665
No 109
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=68.24 E-value=7 Score=36.42 Aligned_cols=66 Identities=20% Similarity=0.118 Sum_probs=50.3
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC--ceEEEEccc------------
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY--KTVVMGASF------------ 154 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy--kTkILAASF------------ 154 (199)
-||+.-|+||||.|+| .|+. || -|..|.+.++..|+ +|-||+=|-
T Consensus 145 k~Avs~A~AGADiVAP-----SdMM--------------DG--rV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRd 203 (320)
T cd04824 145 EVALAYAKAGAHIVAP-----SDMM--------------DG--RVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRD 203 (320)
T ss_pred HHHHHHHHhCCCEEec-----cccc--------------cc--HHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHH
Confidence 8999999999999999 7762 33 35667778888888 788887542
Q ss_pred ------------------CCHhhHHH------HhCCCEEeeCHHH
Q psy10967 155 ------------------RNTGEILA------LAGCDLMTIGPKL 175 (199)
Q Consensus 155 ------------------RNv~QV~a------LAGaDaVTIpP~V 175 (199)
+|..+.+. .=|||++-|-|.+
T Consensus 204 Aa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal 248 (320)
T cd04824 204 AACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGT 248 (320)
T ss_pred HhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCc
Confidence 25555552 4799999998864
No 110
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=68.06 E-value=21 Score=32.12 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHhhhhcCcccccch-------hh-----hHHHHHcCC
Q psy10967 46 LKEKVLQLQRESEEKNKI--------------IENLRNEINAIKQNRHVSYATKATQ-------TE-----DYLDVYNNN 99 (199)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~aik~l~~~~~~~~aTa-------~Q-----a~LA~~agA 99 (199)
..-|+.+.+.+-+.|-.= -+.++++|++|+..-+.|..++.-. .| .-+|+.+||
T Consensus 82 t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGA 161 (257)
T PRK05283 82 IDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGA 161 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCC
Confidence 566777777777776432 2456678888888755344333322 22 348899999
Q ss_pred cccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcC--CceEEEE-cccCCHhhHHH-------HhCCCEE
Q psy10967 100 ADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFG--YKTVVMG-ASFRNTGEILA-------LAGCDLM 169 (199)
Q Consensus 100 ~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~g--ykTkILA-ASFRNv~QV~a-------LAGaDaV 169 (199)
|||--=-|. .+ ...-++-|+-|.+.++.++ -+.+|-| +.+|+.+|..+ ..|.+.+
T Consensus 162 DFVKTSTGf--------------~~-~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg~~~~ 226 (257)
T PRK05283 162 DFIKTSTGK--------------VP-VNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEILGADWA 226 (257)
T ss_pred CEEEcCCCC--------------CC-CCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHhChhhc
Confidence 988542221 10 1244677777777777653 4566666 78999999985 4677766
Q ss_pred e
Q psy10967 170 T 170 (199)
Q Consensus 170 T 170 (199)
|
T Consensus 227 ~ 227 (257)
T PRK05283 227 D 227 (257)
T ss_pred C
Confidence 6
No 111
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=67.95 E-value=41 Score=29.50 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=24.0
Q ss_pred eEEEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 147 TVVMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 147 TkILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
+.|-.+.+++++++.+ .+|||.|-|.-.++
T Consensus 236 pvi~~GGI~s~~da~~~l~~GAd~V~igr~~l 267 (300)
T TIGR01037 236 PIIGVGGITSFEDALEFLMAGASAVQVGTAVY 267 (300)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCceeecHHHh
Confidence 4566799999999997 58999988775544
No 112
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=67.82 E-value=18 Score=31.20 Aligned_cols=108 Identities=13% Similarity=0.046 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHhhhhcCcccccch-----------hhhHHHHHcCC
Q psy10967 45 DLKEKVLQLQRESEEKN--------------KIIENLRNEINAIKQNRHVSYATKATQ-----------TEDYLDVYNNN 99 (199)
Q Consensus 45 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~aik~l~~~~~~~~aTa-----------~Qa~LA~~agA 99 (199)
....|+.+.+++-+.|- .-.+.+.++|++|+..-+ |..+++-. .=.-+|+++||
T Consensus 68 ~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGA 146 (211)
T TIGR00126 68 TTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGA 146 (211)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 35567777777777662 123556667778876543 54443311 23457889999
Q ss_pred cccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-ccCCHhhHHH--HhCCCEEee
Q psy10967 100 ADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLMTI 171 (199)
Q Consensus 100 ~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-SFRNv~QV~a--LAGaDaVTI 171 (199)
|||----|... + ..-++-++.+.+.... +.+|.+| .+|+.+|+.+ .+||+.+-.
T Consensus 147 DfvKTsTGf~~-------~--------gat~~dv~~m~~~v~~---~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 147 DFVKTSTGFGA-------G--------GATVEDVRLMRNTVGD---TIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred CEEEeCCCCCC-------C--------CCCHHHHHHHHHHhcc---CCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 98854222110 1 2334555555555543 5666555 8999999997 688887544
No 113
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.64 E-value=4.8 Score=34.72 Aligned_cols=57 Identities=9% Similarity=-0.118 Sum_probs=38.6
Q ss_pred HHHHHHhHHHHHHHH---HHHHHHHHHHhhhhc------CcccccchhhhHHHHHcCCccc-ccchh
Q psy10967 51 LQLQRESEEKNKIIE---NLRNEINAIKQNRHV------SYATKATQTEDYLDVYNNNADG-QDENA 107 (199)
Q Consensus 51 ~~~~~~~~~~~~~~~---~~~~~l~aik~l~~~------~~~~~aTa~Qa~LA~~agA~YI-SPFVG 107 (199)
-..+...+.|+++|| +--+.+++|++++++ |.-|--|..|+-.|+.|||+|+ ||.++
T Consensus 20 ~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~ 86 (201)
T PRK06015 20 PLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTT 86 (201)
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCC
Confidence 344556778888776 233456677777755 3444445599999999999985 77443
No 114
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=67.15 E-value=37 Score=31.77 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=57.1
Q ss_pred hhcCccccc----chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCC-CCC---CChHHHHHHHHHHHHhc----C-
Q psy10967 78 RHVSYATKA----TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYA-PTE---DPGVVSVTKIYNYYKKF----G- 144 (199)
Q Consensus 78 ~~~~~~~~a----Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~-~~~---ddGV~vVk~I~~~yk~~----g- 144 (199)
++.++.+-+ |...+.-++++|||.| .|||=. |.-.-. ... .|=+..|.+..+..+++ +
T Consensus 184 k~~~ipVIaG~V~t~e~A~~l~~aGAD~V--~VG~G~-------Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~ 254 (368)
T PRK08649 184 YELDVPVIVGGCVTYTTALHLMRTGAAGV--LVGIGP-------GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGG 254 (368)
T ss_pred HHCCCCEEEeCCCCHHHHHHHHHcCCCEE--EECCCC-------CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcC
Confidence 334555543 4456666778999999 667521 110000 011 23333445554433332 2
Q ss_pred -CceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCCc
Q psy10967 145 -YKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTTP 185 (199)
Q Consensus 145 -ykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~~ 185 (199)
.-+-|-++.+|+..++.+ .+|||.|-++-.+... .++|++
T Consensus 255 ~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t-~Espg~ 297 (368)
T PRK08649 255 RYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARA-AEAPGR 297 (368)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhccc-ccCCCc
Confidence 245677788999999996 6999999998666543 345544
No 115
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=66.77 E-value=15 Score=31.61 Aligned_cols=84 Identities=15% Similarity=0.068 Sum_probs=54.3
Q ss_pred HhhhhcCcccccch--hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc
Q psy10967 75 KQNRHVSYATKATQ--TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA 152 (199)
Q Consensus 75 k~l~~~~~~~~aTa--~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA 152 (199)
..|.++||.+.... .+++-++..+.+.| |.||. .+ .-+|.++++++.+. .....+.-+|.|
T Consensus 18 ~~L~~~g~~v~~~~~~~~a~~~~~~~~dlv------iLD~~--lP--------~~dG~~~~~~iR~~-~~~~~PIi~Lta 80 (229)
T COG0745 18 EYLEEEGYEVDVAADGEEALEAAREQPDLV------LLDLM--LP--------DLDGLELCRRLRAK-KGSGPPIIVLTA 80 (229)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHhcCCCEE------EEECC--CC--------CCCHHHHHHHHHhh-cCCCCcEEEEEC
Confidence 45788999887554 56666555552222 24551 11 25799999999977 666666677777
Q ss_pred ccCCHhhHHH-HhCC-CEEeeCHHH
Q psy10967 153 SFRNTGEILA-LAGC-DLMTIGPKL 175 (199)
Q Consensus 153 SFRNv~QV~a-LAGa-DaVTIpP~V 175 (199)
.--..+.|.. .+|| |++|=|.+.
T Consensus 81 ~~~~~d~v~gl~~GADDYl~KPf~~ 105 (229)
T COG0745 81 RDDEEDRVLGLEAGADDYLTKPFSP 105 (229)
T ss_pred CCcHHHHHHHHhCcCCeeeeCCCCH
Confidence 6444444444 6998 779888664
No 116
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=66.76 E-value=21 Score=33.18 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=84.7
Q ss_pred cccceeeee--cCCCCcccccchHHHHHHHHHHHHHhHHHHHHHHHH--------------HHHHHHHHhhhhcCccccc
Q psy10967 23 LPKSVGIFL--GNDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENL--------------RNEINAIKQNRHVSYATKA 86 (199)
Q Consensus 23 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~aik~l~~~~~~~~a 86 (199)
+|+.|-|+= --|.+.+.... =...+|+.=.++..+.|+..||-= ++-+++|+.+....+...+
T Consensus 43 m~~~V~I~DtTlRDG~Q~~g~~-~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~ 121 (347)
T PLN02746 43 LPKFVKIVEVGPRDGLQNEKNI-VPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLT 121 (347)
T ss_pred CCCceEEEECCCCccCcCCCCC-CCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEc
Confidence 366666642 23444443332 346788888889999999988743 3345666654333332221
Q ss_pred -chhhhHHHHHcCCcccccchhhhhhhc-ccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEE-EEccc-------CC
Q psy10967 87 -TQTEDYLDVYNNNADGQDENAKHLVRY-VANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVV-MGASF-------RN 156 (199)
Q Consensus 87 -Ta~Qa~LA~~agA~YISPFVGRIdDwy-kk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkI-LAASF-------RN 156 (199)
.....=.|+++|++.|.-|+. ..|++ +++-+ ......++.++++.++.+.+|...++ +..+| -+
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s-~Sd~h~~~n~~-----~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~ 195 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFAS-ASESFSKSNIN-----CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVP 195 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEe-cCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCC
Confidence 123444677899999988863 34443 22212 11234677778899999999987751 22223 24
Q ss_pred HhhHHH------HhCCCEEeeC
Q psy10967 157 TGEILA------LAGCDLMTIG 172 (199)
Q Consensus 157 v~QV~a------LAGaDaVTIp 172 (199)
++.+.+ .+|+|.+.++
T Consensus 196 ~~~l~~~~~~~~~~Gad~I~l~ 217 (347)
T PLN02746 196 PSKVAYVAKELYDMGCYEISLG 217 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEec
Confidence 555552 5999998775
No 117
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=66.64 E-value=59 Score=28.34 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHH
Q psy10967 130 VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPK 174 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~ 174 (199)
...++++.+.+ + -.-|-.+.+++.+++.+ .+|||.|-+.-.
T Consensus 220 ~~~i~~i~~~~---~-ipii~~GGI~~~~da~~~l~~GAd~V~igra 262 (296)
T cd04740 220 LRMVYQVYKAV---E-IPIIGVGGIASGEDALEFLMAGASAVQVGTA 262 (296)
T ss_pred HHHHHHHHHhc---C-CCEEEECCCCCHHHHHHHHHcCCCEEEEchh
Confidence 45565555433 3 24555689999999997 699999876543
No 118
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=65.82 E-value=47 Score=31.37 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=55.8
Q ss_pred cchhhhHHHHHcCCcccc--cchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH-
Q psy10967 86 ATQTEDYLDVYNNNADGQ--DENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA- 162 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YIS--PFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a- 162 (199)
.|...+..|+++|++.|- --=||..|- ..+-+.++.+|.+.+. +.-..+..+.||+-.+|..
T Consensus 254 ~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~-------------~~~t~~~L~~i~~a~~--~~~~vi~dGGIr~g~Di~KA 318 (381)
T PRK11197 254 LDPEDARDAVRFGADGIVVSNHGGRQLDG-------------VLSSARALPAIADAVK--GDITILADSGIRNGLDVVRM 318 (381)
T ss_pred CCHHHHHHHHhCCCCEEEECCCCCCCCCC-------------cccHHHHHHHHHHHhc--CCCeEEeeCCcCcHHHHHHH
Confidence 445789999999999864 333332221 1234566666655442 1234667788999999995
Q ss_pred -HhCCCEEeeCHHHHHHHhc
Q psy10967 163 -LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 163 -LAGaDaVTIpP~VLeqL~~ 181 (199)
..|||+|-++-.++..+..
T Consensus 319 LaLGA~~V~iGr~~l~~la~ 338 (381)
T PRK11197 319 IALGADTVLLGRAFVYALAA 338 (381)
T ss_pred HHcCcCceeEhHHHHHHHHh
Confidence 6899999999999988753
No 119
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=65.44 E-value=4.5 Score=33.02 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.8
Q ss_pred ceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 146 KTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 146 kTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+..++++|.+|.+|+.+ ..|+|+++++|
T Consensus 94 ~~~~ig~S~h~~~e~~~a~~~g~dYv~~gp 123 (180)
T PF02581_consen 94 PDKIIGASCHSLEEAREAEELGADYVFLGP 123 (180)
T ss_dssp TTSEEEEEESSHHHHHHHHHCTTSEEEEET
T ss_pred cceEEEeecCcHHHHHHhhhcCCCEEEECC
Confidence 45699999999999886 48999999998
No 120
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=65.03 E-value=33 Score=28.25 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=57.2
Q ss_pred HHhHHHHHHHHH---HHHHHHHHHhhhhcC--cc----cccchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCC
Q psy10967 55 RESEEKNKIIEN---LRNEINAIKQNRHVS--YA----TKATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPT 125 (199)
Q Consensus 55 ~~~~~~~~~~~~---~~~~l~aik~l~~~~--~~----~~aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~ 125 (199)
...+.|.++++- =.+.++.|+.+++.- .. +.-|..|.-.|+.+||++|.- - +
T Consensus 24 ~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~-----p-------~------- 84 (190)
T cd00452 24 ALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS-----P-------G------- 84 (190)
T ss_pred HHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc-----C-------C-------
Confidence 344556665542 122445666666652 22 233458889999999998841 1 1
Q ss_pred CCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC------HHHHHHHh
Q psy10967 126 EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG------PKLLEELE 180 (199)
Q Consensus 126 ~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp------P~VLeqL~ 180 (199)
.+ .++.+.-+.++. .+|. ...|+.|+.. .+|||++-+- ++.++++.
T Consensus 85 -~~-----~~~~~~~~~~~~--~~i~-gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~ 138 (190)
T cd00452 85 -LD-----PEVVKAANRAGI--PLLP-GVATPTEIMQALELGADIVKLFPAEAVGPAYIKALK 138 (190)
T ss_pred -CC-----HHHHHHHHHcCC--cEEC-CcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHHH
Confidence 12 245555555554 3332 3349999985 6999998654 45566554
No 121
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.96 E-value=45 Score=30.52 Aligned_cols=61 Identities=5% Similarity=-0.116 Sum_probs=46.7
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.|+..|+.+|||.|.- |++ ..+.++++..+++. +..+-|+.==|.+.+.+ ..|+
T Consensus 208 eea~~a~~agaDiImL-----Dnm----------------spe~l~~av~~~~~---~~~leaSGGI~~~ni~~yA~tGV 263 (290)
T PRK06559 208 AAAEEAAAAGADIIML-----DNM----------------SLEQIEQAITLIAG---RSRIECSGNIDMTTISRFRGLAI 263 (290)
T ss_pred HHHHHHHHcCCCEEEE-----CCC----------------CHHHHHHHHHHhcC---ceEEEEECCCCHHHHHHHHhcCC
Confidence 9999999999999875 665 25777888877653 56666665667777775 7899
Q ss_pred CEEeeCH
Q psy10967 167 DLMTIGP 173 (199)
Q Consensus 167 DaVTIpP 173 (199)
|++.++.
T Consensus 264 D~Is~ga 270 (290)
T PRK06559 264 DYVSSGS 270 (290)
T ss_pred CEEEeCc
Confidence 9988874
No 122
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=63.94 E-value=58 Score=27.64 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=48.9
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCH--hhHHHHhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNT--GEILALAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv--~QV~aLAGa 166 (199)
.-.|++-..|...+.+. .+ .+...|+.+-+.++.+.++.++.++-+.-..+.+. +.+.+..|+
T Consensus 159 ~~~Y~~~~~gl~~~~~~-----~~----------~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~ 223 (256)
T PF01297_consen 159 AFQYFAKRYGLKVIGVI-----EI----------SPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGV 223 (256)
T ss_dssp TTHHHHHHTT-EEEEEE-----SS----------SSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-
T ss_pred HHHHHHHhcCCceeeee-----cc----------ccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCC
Confidence 66799999999888876 11 11247899999999999999998888877666553 444446888
Q ss_pred CEEeeCHH
Q psy10967 167 DLMTIGPK 174 (199)
Q Consensus 167 DaVTIpP~ 174 (199)
..+++.|=
T Consensus 224 ~vv~ld~l 231 (256)
T PF01297_consen 224 KVVYLDPL 231 (256)
T ss_dssp EEEESSTT
T ss_pred cEEEeCCC
Confidence 88777653
No 123
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=63.75 E-value=42 Score=31.61 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=57.7
Q ss_pred cchhhhHHHHHcCCccccc-------chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHh
Q psy10967 86 ATQTEDYLDVYNNNADGQD-------ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTG 158 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YISP-------FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~ 158 (199)
+|..++-.++.+|||.|-- =-+|+.+ | .--|-+..|.++.+.-+.++ -..|.=+.+|+..
T Consensus 159 ~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~------G------vg~pqltAv~~~a~aa~~~~-v~VIaDGGIr~~g 225 (343)
T TIGR01305 159 VTGEMVEELILSGADIVKVGIGPGSVCTTRTKT------G------VGYPQLSAVIECADAAHGLK-GHIISDGGCTCPG 225 (343)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCCcccCceeC------C------CCcCHHHHHHHHHHHhccCC-CeEEEcCCcCchh
Confidence 4667788888999997632 2334333 2 11366777777777765443 2344558999999
Q ss_pred hHHH--HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 159 EILA--LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 159 QV~a--LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
+|.. .+|||+|-++ .++..-...|+++
T Consensus 226 DI~KALA~GAd~VMlG-~llAG~~Espg~~ 254 (343)
T TIGR01305 226 DVAKAFGAGADFVMLG-GMFAGHTESGGEV 254 (343)
T ss_pred HHHHHHHcCCCEEEEC-HhhhCcCcCccee
Confidence 9995 6999999999 5554444555443
No 124
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=63.42 E-value=56 Score=29.13 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=42.5
Q ss_pred chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcc-cCCHhhHHH--H
Q psy10967 87 TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGAS-FRNTGEILA--L 163 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAAS-FRNv~QV~a--L 163 (199)
|..|+..|+.+|||||.- +++ .| .-++++.+.++....+..+.|.. + |++.+.+ .
T Consensus 192 t~eea~~A~~~gaD~I~l-----d~~--------------~p--~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~ 249 (272)
T cd01573 192 SLEEALAAAEAGADILQL-----DKF--------------SP--EELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAA 249 (272)
T ss_pred CHHHHHHHHHcCCCEEEE-----CCC--------------CH--HHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHH
Confidence 338999999999999864 333 12 23456666555543345566554 5 7777775 6
Q ss_pred hCCCEEeeCH
Q psy10967 164 AGCDLMTIGP 173 (199)
Q Consensus 164 AGaDaVTIpP 173 (199)
+|+|.+.++-
T Consensus 250 ~Gvd~I~vsa 259 (272)
T cd01573 250 AGADILVTSA 259 (272)
T ss_pred cCCcEEEECh
Confidence 9999996664
No 125
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=63.04 E-value=8.8 Score=35.78 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=48.4
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC-ceEEEEccc-------------
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMGASF------------- 154 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy-kTkILAASF------------- 154 (199)
.||+.-|+||||.|+| .|+. || -|..|.+.++.+|+ +|-||+=|-
T Consensus 149 ~~Al~~A~AGaDiVAP-----SdMM--------------DG--rV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA 207 (323)
T PRK09283 149 KQALSQAEAGADIVAP-----SDMM--------------DG--RVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDA 207 (323)
T ss_pred HHHHHHHHhCCCEEEc-----cccc--------------cc--HHHHHHHHHHHCCCCCCceeecHHHHHHhhhHHHHHH
Confidence 8999999999999999 6662 33 24566667778877 677776432
Q ss_pred -----------------CCHhhHHH------HhCCCEEeeCHHH
Q psy10967 155 -----------------RNTGEILA------LAGCDLMTIGPKL 175 (199)
Q Consensus 155 -----------------RNv~QV~a------LAGaDaVTIpP~V 175 (199)
+|..+.+. .=|||++-|-|.+
T Consensus 208 ~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal 251 (323)
T PRK09283 208 AGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPAL 251 (323)
T ss_pred HhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCc
Confidence 36666662 5799999998864
No 126
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=62.92 E-value=13 Score=28.74 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEEeeCHHH
Q psy10967 131 VSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKL 175 (199)
Q Consensus 131 ~vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaVTIpP~V 175 (199)
-+++++.+..+.+|++.+|-+.++-+..+....-++|++-++|.+
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi 60 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQT 60 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHH
Confidence 568899999999999999999998877765555679999999998
No 127
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=62.53 E-value=79 Score=27.54 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=49.4
Q ss_pred hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCC--HhhHHHHhCCCE
Q psy10967 91 DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRN--TGEILALAGCDL 168 (199)
Q Consensus 91 a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRN--v~QV~aLAGaDa 168 (199)
.|+|-..|...+++ ++. .+...|+.+-+.++.+.++.++.++-+.-..+.+ .+.+.+..|+.+
T Consensus 182 ~Y~~~~~gl~~~~~-~~~--------------~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v 246 (282)
T cd01017 182 GYLARRYGLKQIAI-VGV--------------SPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKL 246 (282)
T ss_pred HHHHHHCCCeEEec-ccC--------------CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcE
Confidence 48888888776653 111 1224799999999999999999998888887764 234445789988
Q ss_pred EeeCH
Q psy10967 169 MTIGP 173 (199)
Q Consensus 169 VTIpP 173 (199)
++++|
T Consensus 247 ~~ld~ 251 (282)
T cd01017 247 LVLNP 251 (282)
T ss_pred EEecc
Confidence 87764
No 128
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=62.42 E-value=35 Score=30.43 Aligned_cols=121 Identities=11% Similarity=0.001 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhHH-HHHHHHH----H-HHHHHHHHhhhhcC--------cccccch---hhhHHHHHcCCcccccchhh
Q psy10967 46 LKEKVLQLQRESEE-KNKIIEN----L-RNEINAIKQNRHVS--------YATKATQ---TEDYLDVYNNNADGQDENAK 108 (199)
Q Consensus 46 ~~~~~~~~~~~~~~-~~~~~~~----~-~~~l~aik~l~~~~--------~~~~aTa---~Qa~LA~~agA~YISPFVGR 108 (199)
.++|+-=.++..++ |++.||- . ..+.++|+++.+.+ ..+.+-. ...=.|..+|++.|.-++.=
T Consensus 18 ~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~g~~~i~i~~~~ 97 (280)
T cd07945 18 PSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSAGAKVLNLLTKG 97 (280)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHCCCCEEEEEEeC
Confidence 45565555554444 8888775 2 23557888886522 2222222 22335678899998887621
Q ss_pred hhhhc-ccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc----ccC-CHhhHHH------HhCCCEEeeC
Q psy10967 109 HLVRY-VANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA----SFR-NTGEILA------LAGCDLMTIG 172 (199)
Q Consensus 109 IdDwy-kk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA----SFR-Nv~QV~a------LAGaDaVTIp 172 (199)
.|+. +++-+ .....-++.++++.++.+.+|+...+-.. +|| +++.+.+ .+|+|.+.++
T Consensus 98 -S~~h~~~~~~-----~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~ 167 (280)
T cd07945 98 -SLKHCTEQLR-----KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLP 167 (280)
T ss_pred -CHHHHHHHHC-----cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEec
Confidence 2221 11101 01234677788889999999987765554 235 4555542 4899998775
No 129
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.32 E-value=27 Score=30.16 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC---HHHHHHHhcCCCccc-ccCCcccc
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG---PKLLEELENSTTPVD-QMLSEKSG 195 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp---P~VLeqL~~~p~~ve-~~L~~~~a 195 (199)
..+.+.|+++.+.| . +..|-|++..+.+|+.. .+|+|+++.| +++++...++..+.- .-++|+.+
T Consensus 51 ~~~~~~I~~l~~~~---p-~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi 121 (212)
T PRK05718 51 PAALEAIRLIAKEV---P-EALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSEL 121 (212)
T ss_pred ccHHHHHHHHHHHC---C-CCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 45788888887543 3 68899999999999996 7999998765 788888887776654 55666543
No 130
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=62.20 E-value=36 Score=30.30 Aligned_cols=60 Identities=10% Similarity=-0.028 Sum_probs=40.6
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.|+.-|+.+|||||.- +++ +.+.++++.+..+. +..+.|..==|.+.+.+ .+|+
T Consensus 193 eea~~A~~~gaDyI~l-----d~~----------------~~e~l~~~~~~~~~---~ipi~AiGGI~~~ni~~~a~~Gv 248 (268)
T cd01572 193 EQLKEALEAGADIIML-----DNM----------------SPEELREAVALLKG---RVLLEASGGITLENIRAYAETGV 248 (268)
T ss_pred HHHHHHHHcCCCEEEE-----CCc----------------CHHHHHHHHHHcCC---CCcEEEECCCCHHHHHHHHHcCC
Confidence 8999999999999976 433 24666666665543 34455443336666654 6899
Q ss_pred CEEeeC
Q psy10967 167 DLMTIG 172 (199)
Q Consensus 167 DaVTIp 172 (199)
|.+.++
T Consensus 249 d~Iav~ 254 (268)
T cd01572 249 DYISVG 254 (268)
T ss_pred CEEEEE
Confidence 997765
No 131
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=62.15 E-value=17 Score=30.48 Aligned_cols=86 Identities=19% Similarity=0.098 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhhcCccccc---ch--------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHH
Q psy10967 65 ENLRNEINAIKQNRHVSYATKA---TQ--------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSV 133 (199)
Q Consensus 65 ~~~~~~l~aik~l~~~~~~~~a---Ta--------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vV 133 (199)
+.+.++|.++...-+ |..+++ |. .=+=+|+++|||||----|... + ..-++.+
T Consensus 101 ~~~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~-------~--------~at~~~v 164 (203)
T cd00959 101 EAVYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGP-------G--------GATVEDV 164 (203)
T ss_pred HHHHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCC-------C--------CCCHHHH
Confidence 335555667766654 544332 11 2245788999998876433321 1 2345556
Q ss_pred HHHHHHHHhcCCceEEEEc-ccCCHhhHHH--HhCCCEE
Q psy10967 134 TKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAGCDLM 169 (199)
Q Consensus 134 k~I~~~yk~~gykTkILAA-SFRNv~QV~a--LAGaDaV 169 (199)
+.+.+.++ .+..|.+| .+|+.+|+++ .+||+.+
T Consensus 165 ~~~~~~~~---~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 165 KLMKEAVG---GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred HHHHHHhC---CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 66666665 34555554 6999999997 6898865
No 132
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=62.10 E-value=31 Score=31.12 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=55.9
Q ss_pred HHHhhhhcCcccccch---hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCC-CCCChHHHHHHHHHHHHhcCCceE
Q psy10967 73 AIKQNRHVSYATKATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAP-TEDPGVVSVTKIYNYYKKFGYKTV 148 (199)
Q Consensus 73 aik~l~~~~~~~~aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~-~~ddGV~vVk~I~~~yk~~gykTk 148 (199)
-|+.+++.|+.+-.+. .++-.|+++|+|.|-- -|. + -.| +.. ...+-..++.++.+.++ -.-
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~-qG~-e-----AGG---H~g~~~~~~~~L~~~v~~~~~----iPV 193 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKAGADAIVA-QGP-E-----AGG---HRGFEVGSTFSLLPQVRDAVD----IPV 193 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEE-E-T-T-----SSE---E---SSG-HHHHHHHHHHH-S----S-E
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEE-ecc-c-----cCC---CCCccccceeeHHHHHhhhcC----CcE
Confidence 4667778888877766 8999999999998753 121 1 112 111 11134666777776655 677
Q ss_pred EEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 149 VMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 149 ILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
|.|+.+-+.+++.+ ..|||.|-++-.++
T Consensus 194 iaAGGI~dg~~iaaal~lGA~gV~~GTrFl 223 (330)
T PF03060_consen 194 IAAGGIADGRGIAAALALGADGVQMGTRFL 223 (330)
T ss_dssp EEESS--SHHHHHHHHHCT-SEEEESHHHH
T ss_pred EEecCcCCHHHHHHHHHcCCCEeecCCeEE
Confidence 88889999999996 59999999886664
No 133
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=62.02 E-value=76 Score=30.49 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=59.4
Q ss_pred HHHhhhhcCcccccchhhhHHHHHcC-CcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHH----HhcCCc-
Q psy10967 73 AIKQNRHVSYATKATQTEDYLDVYNN-NADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYY----KKFGYK- 146 (199)
Q Consensus 73 aik~l~~~~~~~~aTa~Qa~LA~~ag-A~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~y----k~~gyk- 146 (199)
.|+.|++.|+- |..||-+|.+.| ||.|.- . .| = .|++ ...+.+.++..+.+.. .+++|.
T Consensus 154 ~v~~L~~~G~i---t~~eA~~A~~~g~aD~Ivv--q-~E-A----GGH~----g~~~~~~Llp~v~~l~d~v~~~~~~~~ 218 (418)
T cd04742 154 ILKKLLAEGKI---TEEQAELARRVPVADDITV--E-AD-S----GGHT----DNRPLSVLLPTIIRLRDELAARYGYRR 218 (418)
T ss_pred HHHHHHHcCCC---CHHHHHHHHhCCCCCEEEE--c-cc-C----CCCC----CCccHHhHHHHHHHHHHHHhhccccCC
Confidence 56888888887 789999999999 577765 1 12 1 1321 1234555655555433 345554
Q ss_pred -eEEE-EcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 147 -TVVM-GASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 147 -TkIL-AASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
..|+ |+.+-+.+.+.+ ..|||+|-++-..+
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fl 252 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQ 252 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHH
Confidence 4455 559999999996 69999998876554
No 134
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.89 E-value=42 Score=29.37 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEe---eCHHHHHHHhcCCCcc-cccCCccc
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMT---IGPKLLEELENSTTPV-DQMLSEKS 194 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVT---IpP~VLeqL~~~p~~v-e~~L~~~~ 194 (199)
.++.+.++++.+.|+....+.-|=|+++.|++|+.+ .+|++++- ..|+|++...++..+. +.-++|+.
T Consensus 51 p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsE 124 (222)
T PRK07114 51 DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSE 124 (222)
T ss_pred CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHH
Confidence 457889999988887654467777889999999996 79999854 4477788887777655 45555554
No 135
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=61.73 E-value=9.6 Score=35.52 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=48.9
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC-ceEEEEcccC------------
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMGASFR------------ 155 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy-kTkILAASFR------------ 155 (199)
.||+.-|+||||.|+| .|+. || -|..|.+.++..|+ +|-||+=|-|
T Consensus 146 ~~Avs~A~AGADiVAP-----SdMM--------------DG--rV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA 204 (320)
T cd04823 146 KQALVQAEAGADIVAP-----SDMM--------------DG--RIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDA 204 (320)
T ss_pred HHHHHHHHhCCCEEEc-----ccch--------------hh--HHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHH
Confidence 8999999999999999 6662 33 35666677788888 7888864322
Q ss_pred ------------------CHhhHHH------HhCCCEEeeCHHH
Q psy10967 156 ------------------NTGEILA------LAGCDLMTIGPKL 175 (199)
Q Consensus 156 ------------------Nv~QV~a------LAGaDaVTIpP~V 175 (199)
|..+.+. .=|||++-|-|.+
T Consensus 205 a~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal 248 (320)
T cd04823 205 LGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGM 248 (320)
T ss_pred hcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCc
Confidence 5555552 5799999998864
No 136
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.35 E-value=49 Score=30.39 Aligned_cols=81 Identities=11% Similarity=-0.036 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhc-Cccccc-chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCc
Q psy10967 69 NEINAIKQNRHV-SYATKA-TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYK 146 (199)
Q Consensus 69 ~~l~aik~l~~~-~~~~~a-Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gyk 146 (199)
+-++++|.++.+ -|-|.+ |..|+.-|+.+|||.|.- |++ ..+.+++....++. +
T Consensus 194 ~av~~~r~~~~~~kIeVEvetleea~eA~~aGaDiImL-----Dnm----------------spe~l~~av~~~~~---~ 249 (294)
T PRK06978 194 AALDAAFALNAGVPVQIEVETLAQLETALAHGAQSVLL-----DNF----------------TLDMMREAVRVTAG---R 249 (294)
T ss_pred HHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcCCCEEEE-----CCC----------------CHHHHHHHHHhhcC---C
Confidence 334455554431 133333 239999999999999875 665 24777777776643 5
Q ss_pred eEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 147 TVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 147 TkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
..+-|+.==|.+-+.+ ..|+|++.++.
T Consensus 250 ~~lEaSGGIt~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 250 AVLEVSGGVNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 6666666667777775 68999988873
No 137
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=60.69 E-value=26 Score=30.32 Aligned_cols=122 Identities=16% Similarity=0.058 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH----HH-HHHHHHHhhhhcCcccccch-----hhhH-HHHHcCCcccccchhhhhhhc
Q psy10967 45 DLKEKVLQLQRESEEKNKIIEN----LR-NEINAIKQNRHVSYATKATQ-----TEDY-LDVYNNNADGQDENAKHLVRY 113 (199)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~----~~-~~l~aik~l~~~~~~~~aTa-----~Qa~-LA~~agA~YISPFVGRIdDwy 113 (199)
...+|+.=.+...+.|...||- +. +..++++.+++.+-+++.++ ..++ .|..+|.+.|.-++.- .|+.
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~-s~~~ 96 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPV-SDIH 96 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEec-CHHH
Confidence 3455665666677778877765 11 33356666666544444333 3333 6778999988887632 3332
Q ss_pred -ccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEE--EEcccCCHhhHHH------HhCCCEEeeC
Q psy10967 114 -VANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVV--MGASFRNTGEILA------LAGCDLMTIG 172 (199)
Q Consensus 114 -kk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkI--LAASFRNv~QV~a------LAGaDaVTIp 172 (199)
+++-+ ...+..++.+.++.++.+..|+.+.+ +-++=-+++.+.+ .+|+|.+.++
T Consensus 97 ~~~~~~-----~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 97 LAHKLG-----KDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred HHHHhC-----CCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 11112 01124566778888899999986542 2222234555553 4799998876
No 138
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=60.62 E-value=20 Score=31.15 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=25.2
Q ss_pred ceEEEEcccCCHhhHHH--HhCCCEEeeCHH
Q psy10967 146 KTVVMGASFRNTGEILA--LAGCDLMTIGPK 174 (199)
Q Consensus 146 kTkILAASFRNv~QV~a--LAGaDaVTIpP~ 174 (199)
+-.+++.|.++.+++.+ ..|+|++.++|-
T Consensus 103 ~~~iIG~S~h~~eea~~A~~~g~DYv~~Gpi 133 (211)
T COG0352 103 PGLIIGLSTHDLEEALEAEELGADYVGLGPI 133 (211)
T ss_pred CCCEEEeecCCHHHHHHHHhcCCCEEEECCc
Confidence 55699999999999995 689999999863
No 139
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=60.28 E-value=64 Score=30.63 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcc--cccch----hh---hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCC
Q psy10967 58 EEKNKIIENLRNEINAIKQNRHVSYA--TKATQ----TE---DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDP 128 (199)
Q Consensus 58 ~~~~~~~~~~~~~l~aik~l~~~~~~--~~aTa----~Q---a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~dd 128 (199)
|-|...+ ++.|.+.|+.+++.|-+ +-+-. .. .-.++.+||+++.-- + ..
T Consensus 203 KvG~~L~--~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH------------~--------ea 260 (391)
T PRK13307 203 EAGTPLI--KKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVIS------------G--------LA 260 (391)
T ss_pred EECHHHH--HHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEe------------c--------cC
Confidence 4555555 56678889999887633 33222 22 336779999988761 2 24
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC
Q psy10967 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG 172 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp 172 (199)
|.+.+++..+..+++|.++.|=+-...++.+... +.|+|++.+-
T Consensus 261 ~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllh 306 (391)
T PRK13307 261 PISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELH 306 (391)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEc
Confidence 6678899999999999766552344466766665 7899988665
No 140
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=60.24 E-value=47 Score=36.83 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=51.1
Q ss_pred HHHcCCcccccchhhhhhhcccccCCCCCCC---C---CCChHHHHHHHHHHHHhcCCc--e-EEEEcccCCHhhHHH--
Q psy10967 94 DVYNNNADGQDENAKHLVRYVANTGTKTYAP---T---EDPGVVSVTKIYNYYKKFGYK--T-VVMGASFRNTGEILA-- 162 (199)
Q Consensus 94 A~~agA~YISPFVGRIdDwykk~~G~~~~~~---~---~ddGV~vVk~I~~~yk~~gyk--T-kILAASFRNv~QV~a-- 162 (199)
.++||||+|.- +-. .|..+-.+ . --|-..-+.+.++.+..+|.+ . -+..+.+|+..+|..
T Consensus 1016 vaka~aD~I~I-----dG~----~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~ 1086 (1485)
T PRK11750 1016 VAKAYADLITI-----SGY----DGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAA 1086 (1485)
T ss_pred hhhcCCCEEEE-----eCC----CCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHH
Confidence 36899999975 321 02121111 1 134334588889999999886 3 345678999999994
Q ss_pred HhCCCEEeeCHHHHHHH
Q psy10967 163 LAGCDLMTIGPKLLEEL 179 (199)
Q Consensus 163 LAGaDaVTIpP~VLeqL 179 (199)
+.|||.+-++-..+-.+
T Consensus 1087 aLGAd~~~~gt~~lial 1103 (1485)
T PRK11750 1087 ILGAESFGFGTGPMVAL 1103 (1485)
T ss_pred HcCCcccccchHHHHHc
Confidence 89999988887766544
No 141
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=59.79 E-value=9.8 Score=35.59 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=57.8
Q ss_pred hHHHHHcCCcccccc--hhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCce-EEEEcccCCHhhHHH--HhC
Q psy10967 91 DYLDVYNNNADGQDE--NAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKT-VVMGASFRNTGEILA--LAG 165 (199)
Q Consensus 91 a~LA~~agA~YISPF--VGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykT-kILAASFRNv~QV~a--LAG 165 (199)
+-.|...|++.|--+ =||..|| | .+.++++-++...... +. -++-..+|+-.+|.. ..|
T Consensus 232 ~~~a~~tg~~~I~vsnhggrqlD~-----g--------~st~~~L~ei~~av~~---~~~vi~dGGiR~G~Dv~KAlALG 295 (360)
T COG1304 232 AAGAGGTGADGIEVSNHGGRQLDW-----G--------ISTADSLPEIVEAVGD---RIEVIADGGIRSGLDVAKALALG 295 (360)
T ss_pred HHhhccCCceEEEEEcCCCccccC-----C--------CChHHHHHHHHHHhCC---CeEEEecCCCCCHHHHHHHHHhC
Confidence 455666666665443 3688888 5 6667777777766543 35 455578999999996 699
Q ss_pred CCEEeeCHHHHHHHhcCCCc
Q psy10967 166 CDLMTIGPKLLEELENSTTP 185 (199)
Q Consensus 166 aDaVTIpP~VLeqL~~~p~~ 185 (199)
||++-++-.++..+......
T Consensus 296 A~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 296 ADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred CchhhhhHHHHHHHHhccHH
Confidence 99999999999999876643
No 142
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=59.66 E-value=50 Score=28.46 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHh
Q psy10967 132 SVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 132 vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~ 180 (199)
.++++.++... ...+++..+||.+++.. .+|||.+.++-.+++.+.
T Consensus 175 ~i~~lr~~~~~---~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~ 222 (244)
T PRK13125 175 NIKRVRNLVGN---KYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELE 222 (244)
T ss_pred HHHHHHHhcCC---CCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 55555554431 23667889999999997 599999999999987664
No 143
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=59.51 E-value=72 Score=23.85 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHhcCC-ceEEEEcccCCH--hhHHHHhCCCEEeeCHH
Q psy10967 127 DPGVVSVTKIYNYYKKFGY-KTVVMGASFRNT--GEILALAGCDLMTIGPK 174 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gy-kTkILAASFRNv--~QV~aLAGaDaVTIpP~ 174 (199)
.+....++++.+.+++.+. ++.|+.+.---. .+.....|+|.+.=+..
T Consensus 61 ~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~~~ 111 (119)
T cd02067 61 TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred cccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECCHH
Confidence 4567888888889899876 666555543322 23556899998554444
No 144
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=58.39 E-value=13 Score=34.57 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=49.3
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC-ceEEEEccc-------------
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMGASF------------- 154 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy-kTkILAASF------------- 154 (199)
.||+.-++||||.|+| .|+. || -|..|.+.++.+|+ +|-||+=|-
T Consensus 141 k~Als~A~AGADiVAP-----SdMM--------------DG--rV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdA 199 (314)
T cd00384 141 KIAVSHAEAGADIVAP-----SDMM--------------DG--RVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDA 199 (314)
T ss_pred HHHHHHHHcCCCeeec-----cccc--------------cc--HHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHH
Confidence 8999999999999999 6762 33 35666777888888 588887432
Q ss_pred -----------------CCHhhHHH------HhCCCEEeeCHHH
Q psy10967 155 -----------------RNTGEILA------LAGCDLMTIGPKL 175 (199)
Q Consensus 155 -----------------RNv~QV~a------LAGaDaVTIpP~V 175 (199)
+|..+.+. .=|||++-|-|.+
T Consensus 200 a~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal 243 (314)
T cd00384 200 ADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPAL 243 (314)
T ss_pred hhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCc
Confidence 26666652 5799999998864
No 145
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=57.83 E-value=91 Score=29.31 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=58.2
Q ss_pred cchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--H
Q psy10967 86 ATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--L 163 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--L 163 (199)
.|...+..|+.+|++.|-. .+- |.+.+. ..-+.++++.++.+.+ + -.-|+-+.+|+..+|.. .
T Consensus 245 ~~~eda~~a~~~G~d~I~V-----Snh-----GGrqld-~~~~~~~~L~ei~~~~---~-~~vi~dGGIr~g~Dv~KALa 309 (361)
T cd04736 245 VTAEDAKRCIELGADGVIL-----SNH-----GGRQLD-DAIAPIEALAEIVAAT---Y-KPVLIDSGIRRGSDIVKALA 309 (361)
T ss_pred CCHHHHHHHHHCCcCEEEE-----CCC-----CcCCCc-CCccHHHHHHHHHHHh---C-CeEEEeCCCCCHHHHHHHHH
Confidence 4568899999999998754 122 212111 1124577888877654 3 45677789999999995 6
Q ss_pred hCCCEEeeCHHHHHHHhc
Q psy10967 164 AGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 164 AGaDaVTIpP~VLeqL~~ 181 (199)
.|||+|-|+-.++..+..
T Consensus 310 LGA~aV~iGr~~l~~la~ 327 (361)
T cd04736 310 LGANAVLLGRATLYGLAA 327 (361)
T ss_pred cCCCEEEECHHHHHHHHh
Confidence 999999999999988853
No 146
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=57.41 E-value=15 Score=33.47 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=73.8
Q ss_pred cccccceeeeecCCCCcccccchHHHHHHHH---------------HHHHHhHHHHHHHHHHHHHHHHHHhhhhcCcccc
Q psy10967 21 KYLPKSVGIFLGNDSEYSDERNLQDLKEKVL---------------QLQRESEEKNKIIENLRNEINAIKQNRHVSYATK 85 (199)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~aik~l~~~~~~~~ 85 (199)
|-.|--.|+ .|.|.--+-++-|++||+.=. --|...|.|+- ...|++.|+.-++.|.-|+
T Consensus 80 ~~tPViaGv-~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmg----y~~EVemi~~A~~~gl~T~ 154 (268)
T PF09370_consen 80 KDTPVIAGV-CATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMG----YDREVEMIRKAHEKGLFTT 154 (268)
T ss_dssp SSS-EEEEE--TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT------HHHHHHHHHHHHHTT-EE-
T ss_pred cCCCEEEEe-cCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCC----HHHHHHHHHHHHHCCCeee
Confidence 334433444 467777777777777776411 11233344443 3567889999999999988
Q ss_pred cch---hhhHHHHHcCCcccccchhhhhhhcccccCCCCC--CCCCCChHHHHHHHHHHHHhcCCceEEE--EcccCCHh
Q psy10967 86 ATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTY--APTEDPGVVSVTKIYNYYKKFGYKTVVM--GASFRNTG 158 (199)
Q Consensus 86 aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~--~~~~ddGV~vVk~I~~~yk~~gykTkIL--AASFRNv~ 158 (199)
+=. .||-.-++||||-|.+.+|.-.. |.-.. ...-++.++.+.+|++.-+.-+.++.+| ++-+.+++
T Consensus 155 ~yvf~~e~A~~M~~AGaDiiv~H~GlT~g------G~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~ 228 (268)
T PF09370_consen 155 AYVFNEEQARAMAEAGADIIVAHMGLTTG------GSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPE 228 (268)
T ss_dssp -EE-SHHHHHHHHHHT-SEEEEE-SS----------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHH
T ss_pred eeecCHHHHHHHHHcCCCEEEecCCccCC------CCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHH
Confidence 655 78888889999999999987553 21111 1122356777888888888888888777 46788887
Q ss_pred hHHH
Q psy10967 159 EILA 162 (199)
Q Consensus 159 QV~a 162 (199)
++..
T Consensus 229 D~~~ 232 (268)
T PF09370_consen 229 DAQY 232 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 147
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=56.89 E-value=14 Score=34.44 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=49.4
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC-ceEEEEccc-------------
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMGASF------------- 154 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy-kTkILAASF------------- 154 (199)
-||+.-|+||||.|+| .|+. || -|..|.+.++.+|+ ++-||+=|-
T Consensus 151 ~~Als~A~AGADiVAP-----SdMM--------------DG--rV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA 209 (322)
T PRK13384 151 KQSVTAAKAGADMLAP-----SAMM--------------DG--QVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAA 209 (322)
T ss_pred HHHHHHHHcCCCeEec-----cccc--------------cc--HHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHH
Confidence 8999999999999999 6762 33 35666677788887 788886443
Q ss_pred ----------------CCHhhHHH------HhCCCEEeeCHHH
Q psy10967 155 ----------------RNTGEILA------LAGCDLMTIGPKL 175 (199)
Q Consensus 155 ----------------RNv~QV~a------LAGaDaVTIpP~V 175 (199)
+|.++.+. .=|||++-|-|.+
T Consensus 210 a~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal 252 (322)
T PRK13384 210 VDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGT 252 (322)
T ss_pred hcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCc
Confidence 36666662 5799999998864
No 148
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.89 E-value=69 Score=29.13 Aligned_cols=61 Identities=10% Similarity=-0.005 Sum_probs=45.3
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.|+..|+.+|||.|.- |++ ..+.+++...+++. +..+-|+.==|.+.+.+ ..|+
T Consensus 204 ee~~ea~~~gaDiImL-----Dn~----------------s~e~l~~av~~~~~---~~~leaSGgI~~~ni~~yA~tGV 259 (281)
T PRK06543 204 DQIEPVLAAGVDTIML-----DNF----------------SLDDLREGVELVDG---RAIVEASGNVNLNTVGAIASTGV 259 (281)
T ss_pred HHHHHHHhcCCCEEEE-----CCC----------------CHHHHHHHHHHhCC---CeEEEEECCCCHHHHHHHHhcCC
Confidence 8999999999999875 665 25777777777653 34566666567777775 6899
Q ss_pred CEEeeCH
Q psy10967 167 DLMTIGP 173 (199)
Q Consensus 167 DaVTIpP 173 (199)
|++.++.
T Consensus 260 D~Is~ga 266 (281)
T PRK06543 260 DVISVGA 266 (281)
T ss_pred CEEEeCc
Confidence 9988874
No 149
>PRK05826 pyruvate kinase; Provisional
Probab=56.38 E-value=21 Score=34.54 Aligned_cols=21 Identities=0% Similarity=-0.437 Sum_probs=16.2
Q ss_pred HHHHHcCCccc-ccchhhhhhh
Q psy10967 92 YLDVYNNNADG-QDENAKHLVR 112 (199)
Q Consensus 92 ~LA~~agA~YI-SPFVGRIdDw 112 (199)
-.|..+|+++| .|||..-+|.
T Consensus 180 ~~ald~g~d~I~~sfV~saedv 201 (465)
T PRK05826 180 KFAAEQGVDYIAVSFVRSAEDV 201 (465)
T ss_pred HHHHHCCCCEEEECCCCCHHHH
Confidence 35789999998 6888876664
No 150
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=56.24 E-value=84 Score=28.58 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=26.2
Q ss_pred HHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEee
Q psy10967 137 YNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 171 (199)
Q Consensus 137 ~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTI 171 (199)
.+.+++.+.+..|+++..-+++++.. .+|+|++.+
T Consensus 126 i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE
Confidence 33334433368899999999999885 699999887
No 151
>PLN02623 pyruvate kinase
Probab=56.09 E-value=20 Score=35.91 Aligned_cols=59 Identities=17% Similarity=0.070 Sum_probs=42.0
Q ss_pred HHHHcCCccccc-chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE-----cccCCHhhHHHHhCC
Q psy10967 93 LDVYNNNADGQD-ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG-----ASFRNTGEILALAGC 166 (199)
Q Consensus 93 LA~~agA~YISP-FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA-----ASFRNv~QV~aLAGa 166 (199)
.++++|.|||+- ||..-+ -|+++.++++..+-++.|++ .++.|.++|++ |+
T Consensus 286 f~~~~~vD~ialSFVr~a~---------------------DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~--g~ 342 (581)
T PLN02623 286 FGVENKVDFYAVSFVKDAQ---------------------VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT--AS 342 (581)
T ss_pred HHHHcCCCEEEECCCCCHH---------------------HHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH--hC
Confidence 577788888775 554433 35777788888777787776 67777888777 88
Q ss_pred CEEeeCHH
Q psy10967 167 DLMTIGPK 174 (199)
Q Consensus 167 DaVTIpP~ 174 (199)
|.+-|+|.
T Consensus 343 DgImIgrg 350 (581)
T PLN02623 343 DGAMVARG 350 (581)
T ss_pred CEEEECcc
Confidence 88776643
No 152
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=56.00 E-value=17 Score=27.99 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEEeeCHHH
Q psy10967 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKL 175 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaVTIpP~V 175 (199)
.--+++++.++.+.+|.+.+|-+.|+...... .-++|++-++|.+
T Consensus 13 Ss~la~km~~~a~~~gi~~~i~a~~~~e~~~~--~~~~Dvill~PQv 57 (99)
T cd05565 13 SGLLANALNKGAKERGVPLEAAAGAYGSHYDM--IPDYDLVILAPQM 57 (99)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHh--ccCCCEEEEcChH
Confidence 44578999999999999999999998877654 4578999999988
No 153
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=55.57 E-value=92 Score=25.53 Aligned_cols=50 Identities=12% Similarity=0.273 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHHhcCCceEE-EEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVV-MGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkI-LAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
+.+.+-++++.+....++.+..| ++++++. +++.+ .+|+|.+.++-.+++
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 45777788887776665543444 6678887 67765 389999999988763
No 154
>PRK06267 hypothetical protein; Provisional
Probab=55.56 E-value=57 Score=29.79 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhhcCcccccch------------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHH
Q psy10967 67 LRNEINAIKQNRHVSYATKATQ------------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVT 134 (199)
Q Consensus 67 ~~~~l~aik~l~~~~~~~~aTa------------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk 134 (199)
...-+++++.+++.|+.+.++. .-..+..+.+.+.++-++ + .-.+| ..+.....+...-+-
T Consensus 152 ~ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~--L----~P~pG-Tp~~~~~~~s~~e~l 224 (350)
T PRK06267 152 LDKIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYS--L----NPQKG-TIFENKPSVTTLEYM 224 (350)
T ss_pred HHHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEe--e----eECCC-CcCCCCCCCCHHHHH
Confidence 4456789999999999976654 123444567777652211 1 11112 111111234566667
Q ss_pred HHHHHHHhcCCceEEEEcccC----CHhhHHHHhCCCEEe
Q psy10967 135 KIYNYYKKFGYKTVVMGASFR----NTGEILALAGCDLMT 170 (199)
Q Consensus 135 ~I~~~yk~~gykTkILAASFR----Nv~QV~aLAGaDaVT 170 (199)
++..+++..-.++.|++++++ ..++ ..++||+.+|
T Consensus 225 r~ia~~Rl~lP~~~I~~~~~~~~l~~~~~-~~~aGaN~i~ 263 (350)
T PRK06267 225 NWVSSVRLNFPKIKIITGTWVDKLTNIGP-LIMSGSNVIT 263 (350)
T ss_pred HHHHHHHHHCCCCCcchhhHhHhcchhhH-HhhcCcceee
Confidence 777788887778999888873 3333 4479999997
No 155
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=55.15 E-value=59 Score=29.44 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhhhcCcccccch------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHH
Q psy10967 63 IIENLRNEINAIKQNRHVSYATKATQ------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKI 136 (199)
Q Consensus 63 ~~~~~~~~l~aik~l~~~~~~~~aTa------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I 136 (199)
.+|+|+ |-++|-++|+.|.--- -+-+ ..+|+.-|=|.=.-|- ..-|+.--..+
T Consensus 109 ~~etl~----Aae~Lv~eGF~VlPY~~~D~v~akrL--~d~GcaavMPlgsPIG---------------Sg~Gi~n~~~l 167 (247)
T PF05690_consen 109 PIETLK----AAEILVKEGFVVLPYCTDDPVLAKRL--EDAGCAAVMPLGSPIG---------------SGRGIQNPYNL 167 (247)
T ss_dssp HHHHHH----HHHHHHHTT-EEEEEE-S-HHHHHHH--HHTT-SEBEEBSSSTT---------------T---SSTHHHH
T ss_pred hhHHHH----HHHHHHHCCCEEeecCCCCHHHHHHH--HHCCCCEEEecccccc---------------cCcCCCCHHHH
Confidence 355555 9999999999987433 2223 3789999988332222 12344444444
Q ss_pred HHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHH
Q psy10967 137 YNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKL 175 (199)
Q Consensus 137 ~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~V 175 (199)
..+.++.+ =+-|+-|.+-.+.|+.. ..|||.|-+.-.+
T Consensus 168 ~~i~~~~~-vPvIvDAGiG~pSdaa~AMElG~daVLvNTAi 207 (247)
T PF05690_consen 168 RIIIERAD-VPVIVDAGIGTPSDAAQAMELGADAVLVNTAI 207 (247)
T ss_dssp HHHHHHGS-SSBEEES---SHHHHHHHHHTT-SEEEESHHH
T ss_pred HHHHHhcC-CcEEEeCCCCCHHHHHHHHHcCCceeehhhHH
Confidence 44455554 46778899999999995 7999999998776
No 156
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=54.68 E-value=49 Score=29.48 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhc
Q psy10967 131 VSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 131 ~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~ 181 (199)
.-++++.+.++++--...+++-.+++++|+.+ .+|||.+.|+-.+++.+.+
T Consensus 188 ~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~~ 240 (263)
T CHL00200 188 KKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLG 240 (263)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHHh
Confidence 44677777777764445667999999999997 4789999999999888754
No 157
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=54.62 E-value=17 Score=33.90 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=46.3
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC-ceEEEEccc-------------
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMGASF------------- 154 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy-kTkILAASF------------- 154 (199)
.||+.-++||||.|+| .|+. || -|..|.+.++.+|+ ++-||+=|-
T Consensus 151 k~Al~~A~AGADiVAP-----SdMM--------------DG--rV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA 209 (324)
T PF00490_consen 151 KQALSHAEAGADIVAP-----SDMM--------------DG--RVGAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDA 209 (324)
T ss_dssp HHHHHHHHHT-SEEEE------S----------------TT--HHHHHHHHHHHTTCTTSEEEEEEEEB-SSTGHHHHHH
T ss_pred HHHHHHHHhCCCeecc-----cccc--------------CC--HHHHHHHHHHhCCCCCccEEechHHHhhhhhHhHHHH
Confidence 8999999999999999 7772 33 35667778888888 899997552
Q ss_pred -----------------CCHhhHHH------HhCCCEEeeCHHH
Q psy10967 155 -----------------RNTGEILA------LAGCDLMTIGPKL 175 (199)
Q Consensus 155 -----------------RNv~QV~a------LAGaDaVTIpP~V 175 (199)
+|.++.+. .=|||++-|-|.+
T Consensus 210 a~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal 253 (324)
T PF00490_consen 210 AGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPAL 253 (324)
T ss_dssp HT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSG
T ss_pred hcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecch
Confidence 26666662 4799999987754
No 158
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=54.07 E-value=37 Score=27.58 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEcccCCHhhHHH--HhCCCEEeeC
Q psy10967 148 VVMGASFRNTGEILA--LAGCDLMTIG 172 (199)
Q Consensus 148 kILAASFRNv~QV~a--LAGaDaVTIp 172 (199)
.+++.|..|+.++.+ ..|+|++.++
T Consensus 105 ~~~g~~~~t~~e~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 105 AIIGLSTHTLEEAAAALAAGADYVGVG 131 (212)
T ss_pred CEEEEeCCCHHHHHHHhHcCCCEEEEC
Confidence 467889999999885 6899999864
No 159
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=53.96 E-value=57 Score=30.80 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=43.7
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.+.++++.+|+|+|.- |. ++ | ....++ ++.+.+++.-.++.|||+.+=+.+++.+ .+||
T Consensus 113 ~~~L~~~~~g~D~ivi------D~--Ah-G---------hs~~~i-~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGA 173 (346)
T PRK05096 113 TKQILALSPALNFICI------DV--AN-G---------YSEHFV-QFVAKAREAWPDKTICAGNVVTGEMVEELILSGA 173 (346)
T ss_pred HHHHHhcCCCCCEEEE------EC--CC-C---------cHHHHH-HHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCC
Confidence 5667766679998875 22 11 2 223333 3334445544579999999999999997 6999
Q ss_pred CEEeeC
Q psy10967 167 DLMTIG 172 (199)
Q Consensus 167 DaVTIp 172 (199)
|++-|+
T Consensus 174 D~vKVG 179 (346)
T PRK05096 174 DIVKVG 179 (346)
T ss_pred CEEEEc
Confidence 997543
No 160
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=53.92 E-value=29 Score=29.17 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=41.1
Q ss_pred hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-ccCCHhhHH----H--H
Q psy10967 91 DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEIL----A--L 163 (199)
Q Consensus 91 a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-SFRNv~QV~----a--L 163 (199)
+-.|.++|||||..+ + . .|++.++++.+. -..+..+++. +.++.++.. . .
T Consensus 149 ~~~a~~~GaD~Ik~~------~-----~---------~~~~~~~~i~~~---~~~pvv~~GG~~~~~~~~~l~~~~~~~~ 205 (235)
T cd00958 149 ARIGAELGADIVKTK------Y-----T---------GDAESFKEVVEG---CPVPVVIAGGPKKDSEEEFLKMVYDAME 205 (235)
T ss_pred HHHHHHHCCCEEEec------C-----C---------CCHHHHHHHHhc---CCCCEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 556889999999884 2 1 256666666543 3345533333 346766533 2 5
Q ss_pred hCCCEEeeCHHHH
Q psy10967 164 AGCDLMTIGPKLL 176 (199)
Q Consensus 164 AGaDaVTIpP~VL 176 (199)
+|++.+.++..++
T Consensus 206 ~Ga~gv~vg~~i~ 218 (235)
T cd00958 206 AGAAGVAVGRNIF 218 (235)
T ss_pred cCCcEEEechhhh
Confidence 9999999999887
No 161
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=53.46 E-value=43 Score=31.00 Aligned_cols=133 Identities=16% Similarity=0.065 Sum_probs=79.7
Q ss_pred CCCCcccccchHHHHHHHHHHHHHhHHHHHHHHH----HH-HHHHHHHhhhhcCcccccch-----hhh-HHHHHcCCcc
Q psy10967 33 NDSEYSDERNLQDLKEKVLQLQRESEEKNKIIEN----LR-NEINAIKQNRHVSYATKATQ-----TED-YLDVYNNNAD 101 (199)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~l~aik~l~~~~~~~~aTa-----~Qa-~LA~~agA~Y 101 (199)
-|.+++...++ ...+|+-=.+...+.|...||- .. .+.++++.+++.+.+...++ .++ =.|..+|++.
T Consensus 13 RDG~Q~~~~~~-s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 13 RDGEQTPGVVF-TNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDA 91 (378)
T ss_pred CccCcCCCCCC-CHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCE
Confidence 35555544433 4557777777888889988873 22 23456777777776665554 222 3467889998
Q ss_pred cccchhhhhhhc-ccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE-cccC-CHhhHHH------HhCCCEEeeC
Q psy10967 102 GQDENAKHLVRY-VANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG-ASFR-NTGEILA------LAGCDLMTIG 172 (199)
Q Consensus 102 ISPFVGRIdDwy-kk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA-ASFR-Nv~QV~a------LAGaDaVTIp 172 (199)
|.-|+.- .|+. +++-+ ...+..++.+.+..++.+..|+...+=+ -+.| +++.+.+ .+|+|.+.++
T Consensus 92 i~i~~~~-Sd~h~~~~~~-----~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 92 VHIFIAT-SDIHIKHKLK-----KTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred EEEEEcC-CHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 8777642 2221 11111 0123456778888888999998766532 2233 4444442 4899998776
No 162
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=53.26 E-value=14 Score=35.27 Aligned_cols=52 Identities=12% Similarity=-0.045 Sum_probs=28.8
Q ss_pred CcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc
Q psy10967 99 NADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA 152 (199)
Q Consensus 99 A~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA 152 (199)
-+||+||--=.-+|. .++.++-+-....-..+|+.+...+++.|.+|+|+++
T Consensus 174 f~~IsP~NEP~~~W~--~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~ 225 (384)
T PF14587_consen 174 FDYISPFNEPQWNWA--GGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISAC 225 (384)
T ss_dssp EEEEE--S-TTS-GG----SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEE
T ss_pred cceeCCcCCCCCCCC--CCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEec
Confidence 358999888878882 1111111112223477899999999999999999864
No 163
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=53.17 E-value=22 Score=31.79 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=74.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHH
Q psy10967 56 ESEEKNKIIENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVV 131 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~ 131 (199)
-+|-|+.++.+...=-++|+.|++.||.|.-.. .|.=.|.+.||+.|=-+-|.--+-+... ....-++
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~Ya~a~~~~--------~~~~el~ 169 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGPYANAYDKA--------EREAELE 169 (234)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCch--------hHHHHHH
Confidence 467788887776666678999999999988655 8899999999999999888876643100 0011233
Q ss_pred HHHHHHHHHHhcCCceEEEEc---ccCCHhhHHHHhCCCEEeeCHHHHHHHh
Q psy10967 132 SVTKIYNYYKKFGYKTVVMGA---SFRNTGEILALAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 132 vVk~I~~~yk~~gykTkILAA---SFRNv~QV~aLAGaDaVTIpP~VLeqL~ 180 (199)
-+.+..++-...| -+|=|+ ...|+..+..+-+.+=+-|+-.++.+.+
T Consensus 170 ~i~~aa~~a~~~G--L~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia~Al 219 (234)
T cd00003 170 RIAKAAKLARELG--LGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRAL 219 (234)
T ss_pred HHHHHHHHHHHcC--CEEecCCCCCHHHHHHHHhCCCCeEEccCHHHHHHHH
Confidence 3444444444444 334433 3445555555666666777777765543
No 164
>PLN02591 tryptophan synthase
Probab=52.39 E-value=55 Score=29.02 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhc
Q psy10967 131 VSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 131 ~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~ 181 (199)
.-+.+..+.++++.-..-+++..+++++|+.+ ..|||.+.|+-.+++.+-+
T Consensus 175 ~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~ 227 (250)
T PLN02591 175 GRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGE 227 (250)
T ss_pred hhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhh
Confidence 33566666667664455777999999999997 4789999999999988754
No 165
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=52.20 E-value=22 Score=30.83 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=42.0
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFR 155 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFR 155 (199)
+|-=||-+||.+ +||+.|++. | ..||-...+++|++++..-. +++|-|..+-
T Consensus 20 tQ~dLA~~aGVS--Q~~IArlE~------G------~vdPrlSt~k~Il~aL~e~e-~~~ita~~iM 71 (187)
T COG3620 20 TQKDLARRAGVS--QPYIARLEA------G------KVDPRLSTVKRILEALEEAE-KTRITAKTIM 71 (187)
T ss_pred CHHHHHHHcCcc--HHHHHHHhc------C------CCCccHHHHHHHHHHHHHhh-cceEeHhhhc
Confidence 568899999987 899999996 4 35899999999999998864 4777766544
No 166
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=52.12 E-value=53 Score=28.90 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=30.7
Q ss_pred eEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcC
Q psy10967 147 TVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENS 182 (199)
Q Consensus 147 TkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~ 182 (199)
..+++..++|++|+.. .+|||.+.++-.+++.+.++
T Consensus 200 pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~~ 237 (256)
T TIGR00262 200 PVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEEN 237 (256)
T ss_pred CEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhc
Confidence 4667888999999997 58999999999999988653
No 167
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=52.05 E-value=59 Score=27.02 Aligned_cols=73 Identities=12% Similarity=-0.008 Sum_probs=43.8
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
..|-....+||+.|+. .|.-... ....+.++.+.+.. +.+..++ .-+++..|+.. .+||
T Consensus 35 ~~A~~~~~~GA~~l~v-----~~~~~~~----------~g~~~~~~~i~~~v---~iPi~~~-~~i~~~~~v~~~~~~Ga 95 (217)
T cd00331 35 EIAKAYEKAGAAAISV-----LTEPKYF----------QGSLEDLRAVREAV---SLPVLRK-DFIIDPYQIYEARAAGA 95 (217)
T ss_pred HHHHHHHHcCCCEEEE-----EeCcccc----------CCCHHHHHHHHHhc---CCCEEEC-CeecCHHHHHHHHHcCC
Confidence 4455566899999944 3321111 12345555555543 4454443 46788878885 6999
Q ss_pred CEEe-----eCHHHHHHHh
Q psy10967 167 DLMT-----IGPKLLEELE 180 (199)
Q Consensus 167 DaVT-----IpP~VLeqL~ 180 (199)
|.++ ++++.++++.
T Consensus 96 d~v~l~~~~~~~~~~~~~~ 114 (217)
T cd00331 96 DAVLLIVAALDDEQLKELY 114 (217)
T ss_pred CEEEEeeccCCHHHHHHHH
Confidence 9998 5656665554
No 168
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=51.87 E-value=25 Score=32.66 Aligned_cols=66 Identities=8% Similarity=-0.080 Sum_probs=49.0
Q ss_pred HHHHHHHHHhHHHHHHHHH---HHHHHHHHHhhhhcCccc-----ccchhhhHHHHHcCCcccccchhhhhhhc
Q psy10967 48 EKVLQLQRESEEKNKIIEN---LRNEINAIKQNRHVSYAT-----KATQTEDYLDVYNNNADGQDENAKHLVRY 113 (199)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---~~~~l~aik~l~~~~~~~-----~aTa~Qa~LA~~agA~YISPFVGRIdDwy 113 (199)
|.+.+++..++..+|+++. +-...++|+.|++.||.+ .||-.|+.-|..+||..+.=+.|-|.-+.
T Consensus 154 ~~~~~~~~~~~~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~THlfNaM~~~~ 227 (380)
T TIGR00221 154 ELFKKFLCEAGGVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGATHATHLYNAMSPIH 227 (380)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCCeeeeeccCCCCcC
Confidence 4555666655544555532 233567899999999865 46779999999999999998888888774
No 169
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=51.41 E-value=47 Score=28.67 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHhcCCceEE-EEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 128 PGVVSVTKIYNYYKKFGYKTVV-MGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 128 dGV~vVk~I~~~yk~~gykTkI-LAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
.+++-++++.++.+++|++..| ..+++. .+.+.. .+|+|.+.++-.++.
T Consensus 149 ~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 149 HTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred hHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 5777899999999988887766 456666 666665 699999999988764
No 170
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=51.29 E-value=13 Score=34.49 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=24.3
Q ss_pred ceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 146 KTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 146 kTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+-+++++|..|+.++.. ..|||++.++|
T Consensus 239 ~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGP 268 (347)
T PRK02615 239 PEKIIGRSTTNPEEMAKAIAEGADYIGVGP 268 (347)
T ss_pred CCCEEEEecCCHHHHHHHHHcCCCEEEECC
Confidence 45789999999999986 57999999875
No 171
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.60 E-value=98 Score=29.60 Aligned_cols=64 Identities=9% Similarity=-0.044 Sum_probs=41.3
Q ss_pred hhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCC
Q psy10967 90 EDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCD 167 (199)
Q Consensus 90 Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaD 167 (199)
.+-..++||+|.|+- |- . ..++.. +.++.+.+++.-.+..||++-+-+.++... .+|+|
T Consensus 157 ~v~~lv~aGvDvI~i------D~-----a-------~g~~~~-~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD 217 (404)
T PRK06843 157 RVEELVKAHVDILVI------DS-----A-------HGHSTR-IIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGAD 217 (404)
T ss_pred HHHHHHhcCCCEEEE------EC-----C-------CCCChh-HHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCC
Confidence 344445789998875 22 1 122333 333444445543468899999999999986 59999
Q ss_pred EEeeC
Q psy10967 168 LMTIG 172 (199)
Q Consensus 168 aVTIp 172 (199)
++-++
T Consensus 218 ~I~vG 222 (404)
T PRK06843 218 CLKVG 222 (404)
T ss_pred EEEEC
Confidence 98544
No 172
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=49.47 E-value=1.2e+02 Score=26.24 Aligned_cols=59 Identities=10% Similarity=0.005 Sum_probs=37.0
Q ss_pred HHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEe
Q psy10967 93 LDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMT 170 (199)
Q Consensus 93 LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVT 170 (199)
.+..+|++.|.+ +..+. | ....++.|+++. .+ -..|-..++++.+++.+ ..|||.|-
T Consensus 160 ~l~~aG~d~ihv-----~~~~~---g-------~~ad~~~I~~i~-----~~-ipVIgnGgI~s~eda~~~l~~GaD~Vm 218 (233)
T cd02911 160 LIEKAGADIIHV-----DAMDP---G-------NHADLKKIRDIS-----TE-LFIIGNNSVTTIESAKEMFSYGADMVS 218 (233)
T ss_pred HHHHhCCCEEEE-----CcCCC---C-------CCCcHHHHHHhc-----CC-CEEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 344799998876 22210 1 011245566653 12 23455599999999997 58999998
Q ss_pred eC
Q psy10967 171 IG 172 (199)
Q Consensus 171 Ip 172 (199)
|+
T Consensus 219 iG 220 (233)
T cd02911 219 VA 220 (233)
T ss_pred Ec
Confidence 86
No 173
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=49.33 E-value=15 Score=34.76 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=51.7
Q ss_pred hhhhhhcCcccccccccceeeeecCCCCcccccchHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHhhhhc
Q psy10967 9 YLFFYLNTNLSCKYLPKSVGIFLGNDSEYSDERNLQDLKEKVLQLQRESEEKNKI--------IENLRNEINAIKQNRHV 80 (199)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~aik~l~~~ 80 (199)
-+|..--.|.||.|-|-|-- -.|-|--|-+||-....++-+....+|...|.-+ |++.. .-||.||++
T Consensus 31 VlFvTG~C~~~CfYCPvs~~-r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGdPl~~ieR~~---~~ir~LK~e 106 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDE-RKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGDPLLEIERTV---EYIRLLKDE 106 (353)
T ss_pred EEEEecccCCCcccCcCCHH-hcCCcceeecccccCcHHHHHHHHHHhccccccccCCChHHHHHHHH---HHHHHHHHh
Confidence 35555567899999998854 4588999999999999999999999999988654 34443 356666665
No 174
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=49.32 E-value=77 Score=29.40 Aligned_cols=39 Identities=5% Similarity=0.019 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCC-ceEEE-EcccCCHhhHHH--HhCCCEEee
Q psy10967 133 VTKIYNYYKKFGY-KTVVM-GASFRNTGEILA--LAGCDLMTI 171 (199)
Q Consensus 133 Vk~I~~~yk~~gy-kTkIL-AASFRNv~QV~a--LAGaDaVTI 171 (199)
.+.++++.+..+. +.-|+ .+.+.+.+++.+ ++|||.|-|
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi 281 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQV 281 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhee
Confidence 4444444444321 44455 466999999997 799998655
No 175
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.28 E-value=1.1e+02 Score=27.85 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=44.8
Q ss_pred hhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhC
Q psy10967 88 QTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAG 165 (199)
Q Consensus 88 a~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAG 165 (199)
..|+.-|+.+|||.|.- |++ ..+.+++...+.+. +..+.|+.==|.+.|.+ ..|
T Consensus 204 leea~ea~~~gaDiI~L-----Dn~----------------s~e~l~~av~~~~~---~~~leaSGGI~~~ni~~yA~tG 259 (281)
T PRK06106 204 LDQLEEALELGVDAVLL-----DNM----------------TPDTLREAVAIVAG---RAITEASGRITPETAPAIAASG 259 (281)
T ss_pred HHHHHHHHHcCCCEEEe-----CCC----------------CHHHHHHHHHHhCC---CceEEEECCCCHHHHHHHHhcC
Confidence 38999999999998864 665 24777777776653 33455555556677764 689
Q ss_pred CCEEeeCH
Q psy10967 166 CDLMTIGP 173 (199)
Q Consensus 166 aDaVTIpP 173 (199)
+|++.++.
T Consensus 260 VD~Is~Ga 267 (281)
T PRK06106 260 VDLISVGW 267 (281)
T ss_pred CCEEEeCh
Confidence 99998884
No 176
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=49.16 E-value=68 Score=28.71 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEcccCCHhhHHH-HhCCCEEeeCHHHHHHHhcCCC
Q psy10967 131 VSVTKIYNYYKKFGYKTVVMGASFRNTGEILA-LAGCDLMTIGPKLLEELENSTT 184 (199)
Q Consensus 131 ~vVk~I~~~yk~~gykTkILAASFRNv~QV~a-LAGaDaVTIpP~VLeqL~~~p~ 184 (199)
.-+.+..+.++++.-...+++=.+++++|+.+ ..|||.+.|+-.+++.+.++..
T Consensus 184 ~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa~v~~i~~~~~ 238 (259)
T PF00290_consen 184 DELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLAAGADGVIVGSAFVKIIEENGD 238 (259)
T ss_dssp HHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHHTTSSEEEESHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHHccCCEEEECHHHHHHHHHccc
Confidence 55778888889988777888889999999998 5899999999999999986443
No 177
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=48.96 E-value=33 Score=33.30 Aligned_cols=20 Identities=10% Similarity=-0.335 Sum_probs=15.3
Q ss_pred HHHHcCCccccc-chhhhhhh
Q psy10967 93 LDVYNNNADGQD-ENAKHLVR 112 (199)
Q Consensus 93 LA~~agA~YISP-FVGRIdDw 112 (199)
.|+..|.|||+- ||..-+|.
T Consensus 182 f~~~~~vD~ia~SFV~~~~di 202 (480)
T cd00288 182 FGVEQGVDMIFASFVRKASDV 202 (480)
T ss_pred HHHHcCCCEEEECCCCCHHHH
Confidence 688999999986 77665554
No 178
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=48.84 E-value=28 Score=31.16 Aligned_cols=115 Identities=9% Similarity=0.006 Sum_probs=73.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHH
Q psy10967 56 ESEEKNKIIENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVV 131 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~ 131 (199)
-+|-|+.+..+...=-++|+.|++.||.|.-=. .|.=.|.+.||++|=-+-|.--+-+.. + ....-++
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG~YA~a~~~--~------~~~~el~ 169 (237)
T TIGR00559 98 TTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDADKDQISAAAEVGADRIEIHTGPYANAYNK--K------EMAEELQ 169 (237)
T ss_pred cCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCc--h------hHHHHHH
Confidence 356677776665555578999999999987433 888999999999999988887664210 0 0011233
Q ss_pred HHHHHHHHHHhcCCceEEEEc---ccCCHhhHHHHhC-CCEEeeCHHHHHHHh
Q psy10967 132 SVTKIYNYYKKFGYKTVVMGA---SFRNTGEILALAG-CDLMTIGPKLLEELE 180 (199)
Q Consensus 132 vVk~I~~~yk~~gykTkILAA---SFRNv~QV~aLAG-aDaVTIpP~VLeqL~ 180 (199)
-+++...+-...| -+|=|+ ...|+..+...-+ .+=+-|+-.++.+.+
T Consensus 170 ~i~~aa~~A~~lG--L~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsiia~Al 220 (237)
T TIGR00559 170 RIVKASVHAHSLG--LKVNAGHGLNYHNVKYFAEILPYLDELNIGHAIIADAV 220 (237)
T ss_pred HHHHHHHHHHHcC--CEEecCCCCCHHhHHHHHhCCCCceEEecCHHHHHHHH
Confidence 4444444545444 344443 3556666666555 677888877766554
No 179
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=48.81 E-value=16 Score=31.10 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=26.3
Q ss_pred ceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHH
Q psy10967 146 KTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEE 178 (199)
Q Consensus 146 kTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeq 178 (199)
+-+++++|.+|..++.. ..|+|+++++| ++..
T Consensus 101 ~~~~iG~S~H~~~e~~~A~~~gaDYi~lgp-vf~T 134 (211)
T PRK03512 101 AGLRLGVSTHDDMEIDVALAARPSYIALGH-VFPT 134 (211)
T ss_pred CCCEEEEeCCCHHHHHHHhhcCCCEEEECC-ccCC
Confidence 45799999999999885 47999999998 3433
No 180
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=48.76 E-value=29 Score=32.12 Aligned_cols=46 Identities=9% Similarity=-0.104 Sum_probs=38.0
Q ss_pred HHHHHHhhhhcCccc-----ccchhhhHHHHHcCCcccccchhhhhhhccc
Q psy10967 70 EINAIKQNRHVSYAT-----KATQTEDYLDVYNNNADGQDENAKHLVRYVA 115 (199)
Q Consensus 70 ~l~aik~l~~~~~~~-----~aTa~Qa~LA~~agA~YISPFVGRIdDwykk 115 (199)
+.+.|+.|++.|+.+ .||..|+.-|..+||..+.=+.|-|......
T Consensus 177 ~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR 227 (382)
T PRK11170 177 DAEVIRKLVEAGIVVSAGHSNATYEEAKAGFRAGITFATHLYNAMPYITGR 227 (382)
T ss_pred cHHHHHHHHHCCcEEEeeCCcCCHHHHHHHHHcCCCEEeeccccCCcccCC
Confidence 347899999998865 5677999999999999999888888877543
No 181
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=48.66 E-value=44 Score=24.96 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEEeeCHHHH
Q psy10967 132 SVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLL 176 (199)
Q Consensus 132 vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaVTIpP~VL 176 (199)
+++++.+.++.+|++.+|-++|+...... .-++|++-++|.+-
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~~~~~~~~~~--~~~~Diil~~Pqv~ 57 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEAVPESELEEY--IDDADVVLLGPQVR 57 (96)
T ss_pred HHHHHHHHHHHCCCceEEEEecHHHHHHh--cCCCCEEEEChhHH
Confidence 68899999999999999999998876643 46789999999983
No 182
>PRK02227 hypothetical protein; Provisional
Probab=48.59 E-value=80 Score=28.28 Aligned_cols=69 Identities=12% Similarity=0.009 Sum_probs=47.1
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCC--------HhhH
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRN--------TGEI 160 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRN--------v~QV 160 (199)
..++-++..|+|||--=+-...+. ...+++++.+.+.++.+..+++++++-|-. +..+
T Consensus 71 ~aa~~~a~~GvDyVKvGl~~~~~~--------------~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l 136 (238)
T PRK02227 71 LAALGAAATGADYVKVGLYGGKTA--------------EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSL 136 (238)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcH--------------HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHH
Confidence 345556678999985421122222 345788888888899999999999998854 3355
Q ss_pred HH---HhCCCEEee
Q psy10967 161 LA---LAGCDLMTI 171 (199)
Q Consensus 161 ~a---LAGaDaVTI 171 (199)
.+ .+|++.+-|
T Consensus 137 ~~~a~~aGf~g~Ml 150 (238)
T PRK02227 137 PAIAADAGFDGAML 150 (238)
T ss_pred HHHHHHcCCCEEEE
Confidence 53 689998765
No 183
>PTZ00300 pyruvate kinase; Provisional
Probab=47.45 E-value=32 Score=33.25 Aligned_cols=20 Identities=5% Similarity=-0.371 Sum_probs=15.9
Q ss_pred HHHHcCCcccc-cchhhhhhh
Q psy10967 93 LDVYNNNADGQ-DENAKHLVR 112 (199)
Q Consensus 93 LA~~agA~YIS-PFVGRIdDw 112 (199)
.|+.+|++||+ |||..-+|.
T Consensus 155 ~ald~gvd~I~~SfVrsaeDv 175 (454)
T PTZ00300 155 FGVEQGVDMIFASFIRSAEQV 175 (454)
T ss_pred HHHHCCCCEEEECCCCCHHHH
Confidence 67799999976 788777664
No 184
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=46.15 E-value=83 Score=28.79 Aligned_cols=91 Identities=9% Similarity=-0.004 Sum_probs=60.7
Q ss_pred HHHHHHhhhhcCcccccchhhhHH----HHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC
Q psy10967 70 EINAIKQNRHVSYATKATQTEDYL----DVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY 145 (199)
Q Consensus 70 ~l~aik~l~~~~~~~~aTa~Qa~L----A~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy 145 (199)
-++|-++|-++|+.|..--.-... -..+|+..|=|.-.-|- ..-|+.--..|.-+.++-.
T Consensus 126 tl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIG---------------Sg~Gl~n~~~l~~i~e~~~- 189 (267)
T CHL00162 126 TLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIG---------------SGQGLQNLLNLQIIIENAK- 189 (267)
T ss_pred HHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCccc---------------CCCCCCCHHHHHHHHHcCC-
Confidence 344999999999998744311111 23789999988333322 2345554455554545443
Q ss_pred ceEEEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 146 KTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 146 kTkILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
=.-|..|.+.++.|+.. ..|||.|-+.-.+.
T Consensus 190 vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 190 IPVIIDAGIGTPSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred CcEEEeCCcCCHHHHHHHHHcCCCEEeecceee
Confidence 45778999999999996 79999988765554
No 185
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.01 E-value=1.1e+02 Score=26.27 Aligned_cols=83 Identities=18% Similarity=0.008 Sum_probs=58.5
Q ss_pred HHhhhhcCccc---ccchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEE
Q psy10967 74 IKQNRHVSYAT---KATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVM 150 (199)
Q Consensus 74 ik~l~~~~~~~---~aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkIL 150 (199)
++..++.|+.. ..|..|...|..+|++||--|-. + .-|.+.++.+...+. ...+|
T Consensus 102 ~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa----------~--------~~G~~~ik~l~~~~p----~ip~~ 159 (213)
T PRK06552 102 AKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPG----------S--------TLGPSFIKAIKGPLP----QVNVM 159 (213)
T ss_pred HHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCc----------c--------cCCHHHHHHHhhhCC----CCEEE
Confidence 44455555544 44558999999999999997541 1 236777887766553 36777
Q ss_pred EcccCCHhhHHH--HhCCCEEeeCHHHHHH
Q psy10967 151 GASFRNTGEILA--LAGCDLMTIGPKLLEE 178 (199)
Q Consensus 151 AASFRNv~QV~a--LAGaDaVTIpP~VLeq 178 (199)
+..==|.+.+.+ .+|++.+.++-.++..
T Consensus 160 atGGI~~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 160 VTGGVNLDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred EECCCCHHHHHHHHHCCCcEEEEchHHhCc
Confidence 776666777776 6899999999888643
No 186
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=44.71 E-value=76 Score=29.20 Aligned_cols=132 Identities=17% Similarity=0.137 Sum_probs=78.9
Q ss_pred CCCcccccchHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhhcCcccccch-----hhhH-HHHHcCCccc
Q psy10967 34 DSEYSDERNLQDLKEKVLQLQRESEEKNKIIEN-----LRNEINAIKQNRHVSYATKATQ-----TEDY-LDVYNNNADG 102 (199)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~aik~l~~~~~~~~aTa-----~Qa~-LA~~agA~YI 102 (199)
|.+++....+ ...+|+.=.+...+.|...||- =..+.++||.+.+.+.++...+ .+++ .|+.+|++.|
T Consensus 10 DG~Q~~~~~~-s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i 88 (363)
T TIGR02090 10 DGEQTPGVSL-TVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSI 88 (363)
T ss_pred CcCCCCCCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEE
Confidence 4444433322 4567777778888889988873 1345667777777666555433 2222 4678899988
Q ss_pred ccchhhhhhhc-ccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE-cccC-CHhhHHH------HhCCCEEeeC
Q psy10967 103 QDENAKHLVRY-VANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG-ASFR-NTGEILA------LAGCDLMTIG 172 (199)
Q Consensus 103 SPFVGRIdDwy-kk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA-ASFR-Nv~QV~a------LAGaDaVTIp 172 (199)
.-|+.= .|+. +++-+ ...+..++.+.+..++.+.+|+...+-. -+.| +++.+.+ .+|+|.+.++
T Consensus 89 ~i~~~~-Sd~~~~~~~~-----~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 89 HTFIAT-SPIHLKYKLK-----KSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEEEcC-CHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 877652 1211 00001 0012356777888888899998876553 2333 4454442 4899998665
No 187
>PRK08999 hypothetical protein; Provisional
Probab=44.69 E-value=20 Score=31.35 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=25.3
Q ss_pred ceEEEEcccCCHhhHHH--HhCCCEEeeCHH
Q psy10967 146 KTVVMGASFRNTGEILA--LAGCDLMTIGPK 174 (199)
Q Consensus 146 kTkILAASFRNv~QV~a--LAGaDaVTIpP~ 174 (199)
+..+++.|.+|.+++.+ ..|+|+++++|-
T Consensus 225 ~~~~ig~S~h~~~~~~~a~~~~~dyi~~gpv 255 (312)
T PRK08999 225 AGRWVAASCHDAEELARAQRLGVDFAVLSPV 255 (312)
T ss_pred CCCEEEEecCCHHHHHHHHhcCCCEEEECCC
Confidence 56799999999999885 579999999983
No 188
>PLN02334 ribulose-phosphate 3-epimerase
Probab=44.45 E-value=1e+02 Score=26.12 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhh-hcCccccc-chhhhHHHHHcC--Cccc---ccchhhhhh-hcccccCCCCCCCCCCChHHHHHHHH
Q psy10967 66 NLRNEINAIKQNR-HVSYATKA-TQTEDYLDVYNN--NADG---QDENAKHLV-RYVANTGTKTYAPTEDPGVVSVTKIY 137 (199)
Q Consensus 66 ~~~~~l~aik~l~-~~~~~~~a-Ta~Qa~LA~~ag--A~YI---SPFVGRIdD-wykk~~G~~~~~~~~ddGV~vVk~I~ 137 (199)
.....++.|+... ..|+.+.. |-.+...+...+ +||| +-|-|.-.. | ...|++-++++.
T Consensus 103 ~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~-------------~~~~~~~i~~~~ 169 (229)
T PLN02334 103 HLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSF-------------IPSMMDKVRALR 169 (229)
T ss_pred hHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCcccc-------------CHHHHHHHHHHH
Confidence 3344444555433 34666653 445555555566 9998 333332111 1 124566666655
Q ss_pred HHHHhcCCceEE-EEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 138 NYYKKFGYKTVV-MGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 138 ~~yk~~gykTkI-LAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
+.+. + ..| ..+++ +.+.+.+ .+|+|.+.++-.++.
T Consensus 170 ~~~~--~--~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~ 207 (229)
T PLN02334 170 KKYP--E--LDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFG 207 (229)
T ss_pred HhCC--C--CcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhC
Confidence 5432 2 234 33466 6777765 699999999977764
No 189
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.39 E-value=53 Score=27.42 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=48.6
Q ss_pred ccchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc---ccCCHhhHH
Q psy10967 85 KATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA---SFRNTGEIL 161 (199)
Q Consensus 85 ~aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA---SFRNv~QV~ 161 (199)
+.|..|+..|..+||+||..|-.. .--|.+.++.+...+. +..++|- +..|..+++
T Consensus 112 ~~t~~e~~~A~~~Gadyv~~Fpt~-----------------~~~G~~~l~~~~~~~~----~ipvvaiGGI~~~n~~~~l 170 (187)
T PRK07455 112 ALTPTEIVTAWQAGASCVKVFPVQ-----------------AVGGADYIKSLQGPLG----HIPLIPTGGVTLENAQAFI 170 (187)
T ss_pred cCCHHHHHHHHHCCCCEEEECcCC-----------------cccCHHHHHHHHhhCC----CCcEEEeCCCCHHHHHHHH
Confidence 456688999999999999975531 0237888888887652 3567766 334444444
Q ss_pred HHhCCCEEeeCHHHH
Q psy10967 162 ALAGCDLMTIGPKLL 176 (199)
Q Consensus 162 aLAGaDaVTIpP~VL 176 (199)
+ +|++.+-+.-.++
T Consensus 171 ~-aGa~~vav~s~i~ 184 (187)
T PRK07455 171 Q-AGAIAVGLSGQLF 184 (187)
T ss_pred H-CCCeEEEEehhcc
Confidence 4 8999998876654
No 190
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=44.30 E-value=2.4e+02 Score=25.31 Aligned_cols=79 Identities=15% Similarity=0.025 Sum_probs=59.0
Q ss_pred hhhHHHHH-cCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhC
Q psy10967 89 TEDYLDVY-NNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAG 165 (199)
Q Consensus 89 ~Qa~LA~~-agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAG 165 (199)
-|+.-+.+ .|+||+++=+|-+--.|++.+. =+++.+++|.+.+ +.+-...++|==+.+++.. .+|
T Consensus 156 eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~---------l~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~G 223 (282)
T TIGR01859 156 DEAEQFVKETGVDYLAAAIGTSHGKYKGEPG---------LDFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLG 223 (282)
T ss_pred HHHHHHHHHHCcCEEeeccCccccccCCCCc---------cCHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcC
Confidence 67777776 8999999877776655543222 3577888887765 5788888888888888875 689
Q ss_pred CCEEeeCHHHHHHH
Q psy10967 166 CDLMTIGPKLLEEL 179 (199)
Q Consensus 166 aDaVTIpP~VLeqL 179 (199)
++-+-|.-++....
T Consensus 224 i~kiNv~T~l~~a~ 237 (282)
T TIGR01859 224 IAKINIDTDCRIAF 237 (282)
T ss_pred CCEEEECcHHHHHH
Confidence 99999998885444
No 191
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=44.12 E-value=54 Score=30.20 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=61.0
Q ss_pred HHHHhhhhcCcccccch---hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceE
Q psy10967 72 NAIKQNRHVSYATKATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTV 148 (199)
Q Consensus 72 ~aik~l~~~~~~~~aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTk 148 (199)
+-|..++..|+.+-.+. .|+-.+.++|+|-|-- -...-.|+.+-...+-.-..++.++.+.++. =.-
T Consensus 118 ~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~-------~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~---iPV 187 (336)
T COG2070 118 EFVARLKAAGIKVIHSVITVREALKAERAGADAVIA-------QGAEAGGHRGGVDLEVSTFALVPEVVDAVDG---IPV 187 (336)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEe-------cCCcCCCcCCCCCCCccHHHHHHHHHHHhcC---CCE
Confidence 34555556677666555 9999999999996643 0001112111101123346778888877664 467
Q ss_pred EEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 149 VMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 149 ILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
|.|+.+-+.+++.+ ..|||.|-++-.++
T Consensus 188 iAAGGI~dg~~i~AAlalGA~gVq~GT~Fl 217 (336)
T COG2070 188 IAAGGIADGRGIAAALALGADGVQMGTRFL 217 (336)
T ss_pred EEecCccChHHHHHHHHhccHHHHhhhhhh
Confidence 88889999999996 68999887765553
No 192
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.69 E-value=36 Score=25.65 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEEeeCHHHH
Q psy10967 132 SVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLL 176 (199)
Q Consensus 132 vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaVTIpP~VL 176 (199)
++.++.++.+++|++.+|-+.|+....+.. -.+|++-++|.+-
T Consensus 19 l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~--~~~Dvill~pqi~ 61 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAAGSYGAAGEKL--DDADVVLLAPQVA 61 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEEecHHHHHhhc--CCCCEEEECchHH
Confidence 679999999999999999999988776544 4679999998883
No 193
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=42.43 E-value=37 Score=27.54 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.2
Q ss_pred ceEEEEcccCCHhhHHH--HhCCCEEee
Q psy10967 146 KTVVMGASFRNTGEILA--LAGCDLMTI 171 (199)
Q Consensus 146 kTkILAASFRNv~QV~a--LAGaDaVTI 171 (199)
+..+++.|+++..|+.+ ..|+|++.+
T Consensus 95 ~~~~ig~s~h~~~e~~~a~~~g~dyi~~ 122 (196)
T TIGR00693 95 PDKIIGVSTHNLEELAEAEAEGADYIGF 122 (196)
T ss_pred CCCEEEEeCCCHHHHHHHhHcCCCEEEE
Confidence 45789999999999986 479999885
No 194
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=42.43 E-value=50 Score=30.38 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy10967 43 LQDLKEKVLQLQRESEEKNKIIENLRNEINAIK 75 (199)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik 75 (199)
|.++.|-+.|+||+++++++-.+.++..+..++
T Consensus 121 lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 121 LEELEETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999999999887666554
No 195
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=42.11 E-value=98 Score=28.84 Aligned_cols=72 Identities=8% Similarity=0.031 Sum_probs=43.5
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.++-.|...|++||..+.|.=.. ..+ ..+.+.++++.+. .+.+..+ ...+ +.+.+.+ .+|+
T Consensus 122 e~~~~a~~~GaD~I~~~pg~~~~----~~~--------~~~~~~l~~l~~~---~~iPI~a-~GGI-~~~n~~~~l~aGA 184 (430)
T PRK07028 122 KRAVELEELGVDYINVHVGIDQQ----MLG--------KDPLELLKEVSEE---VSIPIAV-AGGL-DAETAAKAVAAGA 184 (430)
T ss_pred HHHHHHHhcCCCEEEEEeccchh----hcC--------CChHHHHHHHHhh---CCCcEEE-ECCC-CHHHHHHHHHcCC
Confidence 44566778999999765443110 001 2356666666643 3333333 3356 5666664 6999
Q ss_pred CEEeeCHHHHH
Q psy10967 167 DLMTIGPKLLE 177 (199)
Q Consensus 167 DaVTIpP~VLe 177 (199)
|.+.+.-.++.
T Consensus 185 dgv~vGsaI~~ 195 (430)
T PRK07028 185 DIVIVGGNIIK 195 (430)
T ss_pred CEEEEChHHcC
Confidence 99999988764
No 196
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=42.07 E-value=2.4e+02 Score=24.77 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=43.5
Q ss_pred HHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEe
Q psy10967 93 LDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMT 170 (199)
Q Consensus 93 LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVT 170 (199)
.+..+||+.|.- +..+ .| ......+.|+++.+.+ +.-..|--.++++.+++.+ .+|||.|-
T Consensus 156 ~l~~aGad~i~V-----d~~~---~g------~~~a~~~~I~~i~~~~---~~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 156 NLVDDGFDGIHV-----DAMY---PG------KPYADMDLLKILSEEF---NDKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred HHHHcCCCEEEE-----eeCC---CC------CchhhHHHHHHHHHhc---CCCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 456999999954 3332 12 0002356666666543 2133666689999999996 69999999
Q ss_pred eCHHHH
Q psy10967 171 IGPKLL 176 (199)
Q Consensus 171 IpP~VL 176 (199)
|.-.++
T Consensus 219 vgR~~l 224 (231)
T TIGR00736 219 VARAIL 224 (231)
T ss_pred EcHhhc
Confidence 887655
No 197
>KOG2544|consensus
Probab=41.94 E-value=38 Score=34.00 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=65.1
Q ss_pred ceeeeecCCCCcccccchHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHhhh--hcCccccc
Q psy10967 26 SVGIFLGNDSEYSDERNLQDLKEKVLQLQRESEEKNKII-----------------ENLRNEINAIKQNR--HVSYATKA 86 (199)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~aik~l~--~~~~~~~a 86 (199)
..|||--....+||--..|+....+-....|+.+|--|| |.+|.-|-.||.+| .++..+.-
T Consensus 435 vMgIlN~TPDSFSDGGkf~~ids~l~~v~smi~dga~IiDiGgqSTrP~a~~iS~eEEirR~iP~ikavR~~~e~~~v~i 514 (711)
T KOG2544|consen 435 VMGILNLTPDSFSDGGKFQSIDSALSRVRSMISDGADIIDIGGQSTRPMASRISSEEEIRRLIPVIKAVRGMTEMPQVLI 514 (711)
T ss_pred EEEEEecCCcccCCCCccccHHHHHHHHHHHhcCCceEEeecCccCCCCccccchHHHHHHHhHHHHHHhcccccCceeE
Confidence 368887667779999999999998888888988886665 56787888888888 55554432
Q ss_pred ch-----hhhHHHHHcCCcccccchhhhhh
Q psy10967 87 TQ-----TEDYLDVYNNNADGQDENAKHLV 111 (199)
Q Consensus 87 Ta-----~Qa~LA~~agA~YISPFVGRIdD 111 (199)
.. -=|-.|+++||+-|.---|-+.|
T Consensus 515 SiDTy~S~VAkeAI~~GadIiNDvsgG~~D 544 (711)
T KOG2544|consen 515 SIDTYNSEVAKEAIKNGADIINDVSGGLLD 544 (711)
T ss_pred EEechhhHHHHHHHhccchheeccccccCc
Confidence 22 56889999999988765555544
No 198
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=41.80 E-value=1.7e+02 Score=26.91 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=51.1
Q ss_pred HHHhhhhc-Cccc--ccch---hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCc
Q psy10967 73 AIKQNRHV-SYAT--KATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYK 146 (199)
Q Consensus 73 aik~l~~~-~~~~--~aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gyk 146 (199)
||+..|+. ++.+ ..-. -|+--|++||||-|-- ||| ..+.++++.+.+...+
T Consensus 177 Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImL-----DNm----------------~~e~~~~av~~l~~~~-- 233 (280)
T COG0157 177 AVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIML-----DNM----------------SPEELKEAVKLLGLAG-- 233 (280)
T ss_pred HHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEe-----cCC----------------CHHHHHHHHHHhccCC--
Confidence 55555554 4333 3222 8999999999998864 776 3588888888875554
Q ss_pred eEEEEcc-cCCHhhHHH--HhCCCEEeeC
Q psy10967 147 TVVMGAS-FRNTGEILA--LAGCDLMTIG 172 (199)
Q Consensus 147 TkILAAS-FRNv~QV~a--LAGaDaVTIp 172 (199)
..++-|| ==|.+-+.+ ..|+|++.++
T Consensus 234 ~~~lEaSGgIt~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 234 RALLEASGGITLENIREYAETGVDVISVG 262 (280)
T ss_pred ceEEEEeCCCCHHHHHHHhhcCCCEEEeC
Confidence 3444444 336666664 6889998877
No 199
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.72 E-value=1.6e+02 Score=25.85 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHHHHhcCCceEEEEcccCC--HhhHHHHhCCCEEee
Q psy10967 126 EDPGVVSVTKIYNYYKKFGYKTVVMGASFRN--TGEILALAGCDLMTI 171 (199)
Q Consensus 126 ~ddGV~vVk~I~~~yk~~gykTkILAASFRN--v~QV~aLAGaDaVTI 171 (199)
..|+.+-++++.+.++.++.++.+....+.+ .+.|.+..|+.++.+
T Consensus 210 ~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l 257 (286)
T cd01019 210 IDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAKVGEL 257 (286)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCceEEEe
Confidence 4789999999999999999999887766643 233334688877665
No 200
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=41.48 E-value=1.5e+02 Score=25.21 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=48.5
Q ss_pred chhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--Hh
Q psy10967 87 TQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LA 164 (199)
Q Consensus 87 Ta~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LA 164 (199)
|..|+..|..+|+|||.-|-. + .-|.+.++++...+. .+..++|-.==|++.+.+ .+
T Consensus 113 t~~E~~~A~~~Gad~vk~Fpa----------~--------~~G~~~l~~l~~~~~---~~ipvvaiGGI~~~n~~~~~~a 171 (206)
T PRK09140 113 TPTEAFAALRAGAQALKLFPA----------S--------QLGPAGIKALRAVLP---PDVPVFAVGGVTPENLAPYLAA 171 (206)
T ss_pred CHHHHHHHHHcCCCEEEECCC----------C--------CCCHHHHHHHHhhcC---CCCeEEEECCCCHHHHHHHHHC
Confidence 348899999999999985431 1 236777887776654 135566554226666665 58
Q ss_pred CCCEEeeCHHHHH
Q psy10967 165 GCDLMTIGPKLLE 177 (199)
Q Consensus 165 GaDaVTIpP~VLe 177 (199)
|+|.+-+.-.++.
T Consensus 172 Ga~~vav~s~l~~ 184 (206)
T PRK09140 172 GAAGFGLGSALYR 184 (206)
T ss_pred CCeEEEEehHhcc
Confidence 9999998888764
No 201
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=40.79 E-value=1.1e+02 Score=27.46 Aligned_cols=30 Identities=23% Similarity=0.511 Sum_probs=23.8
Q ss_pred EEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 148 VVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 148 kILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
.|-.+.++|.+++.+ .+|||.|-|.-.++.
T Consensus 242 Iig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 242 LAATTGVHDAEDVIKMLLAGADVVMIASALLR 273 (334)
T ss_pred EEEECCCCCHHHHHHHHHcCCCceeeehHHhh
Confidence 444677999999997 799999998755544
No 202
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.74 E-value=59 Score=29.62 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.8
Q ss_pred hhhHHHHHcCCcccccchhhhhhh
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVR 112 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDw 112 (199)
.++|+.+-.|+.-++-|++|++..
T Consensus 116 ~t~Yidvil~SkSfsD~IsRvtAi 139 (265)
T COG3883 116 ATSYIDVILNSKSFSDLISRVTAI 139 (265)
T ss_pred hhHHHHHHHccCcHHHHHHHHHHH
Confidence 356999999999999999999987
No 203
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.70 E-value=98 Score=27.44 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCceEEEEcccCCHhhHHH-HhCCCEEeeCHHHHHHHhc
Q psy10967 133 VTKIYNYYKKFGYKTVVMGASFRNTGEILA-LAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 133 Vk~I~~~yk~~gykTkILAASFRNv~QV~a-LAGaDaVTIpP~VLeqL~~ 181 (199)
+.+..+.++++.-...+++..++|++|+.+ ..+||.+.|+-.+.+.+.+
T Consensus 188 ~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGSaiv~~~~~ 237 (258)
T PRK13111 188 LAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGSALVKIIEE 237 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcHHHHHHHHh
Confidence 344444555554456788999999999997 5669999999999888764
No 204
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=40.63 E-value=14 Score=33.12 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCCh--H
Q psy10967 57 SEEKNKIIENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPG--V 130 (199)
Q Consensus 57 ~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddG--V 130 (199)
+|-|+.+..+...=-++|+.|++.||.|.-.. .|-=.|.+.||++|=-+-|.--+-+..... ..- .
T Consensus 100 TegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~--------~~~ell 171 (239)
T PF03740_consen 100 TEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELHTGPYANAFDDAEE--------AEEELL 171 (239)
T ss_dssp TTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEETHHHHHHSSHHHH--------HHHHHH
T ss_pred CCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEehhHhhhhcCCHHH--------HHHHHH
Confidence 45566666444444478999999999998655 888999999999999999998876410000 000 1
Q ss_pred HHHHHHHHHHHhcCCceEEEEc---ccCCHhhHHHHhCCCEEeeCHHHHHHHh
Q psy10967 131 VSVTKIYNYYKKFGYKTVVMGA---SFRNTGEILALAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 131 ~vVk~I~~~yk~~gykTkILAA---SFRNv~QV~aLAGaDaVTIpP~VLeqL~ 180 (199)
+-+.+...+-...| -+|=|+ ++.|+..+.+.-+.+=+-|+-.++.+.+
T Consensus 172 ~~l~~aa~~a~~lG--L~VnAGHgL~y~N~~~i~~i~~i~EvnIGHaiia~Al 222 (239)
T PF03740_consen 172 ERLRDAARYAHELG--LGVNAGHGLNYDNVRPIAAIPPIEEVNIGHAIIARAL 222 (239)
T ss_dssp HHHHHHHHHHHHTT---EEEEETT--TTTHHHHHTSTTEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CEEecCCCCCHHHHHHHHhCCCceEEecCHHHHHHHH
Confidence 23444455555555 344443 5778888777777777888877766543
No 205
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.32 E-value=37 Score=32.80 Aligned_cols=48 Identities=33% Similarity=0.365 Sum_probs=35.4
Q ss_pred cceeeeecC----CCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy10967 25 KSVGIFLGN----DSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEIN 72 (199)
Q Consensus 25 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (199)
++|-|++|- .|.-.-+|+++|++|++-|++|.....-|.++.+|-=++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (432)
T PRK12724 48 KMIEIQIGIPEKQASREKIERKLQDLKELLKQKSYTEPERKKTLQTLKPLSE 99 (432)
T ss_pred eeEEEEEecCCcccchHHHHHhhhhHHHHHHHHHHhhhhcHHHHHHHHHHHH
Confidence 455566653 233346899999999999999988888888888775543
No 206
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=40.26 E-value=48 Score=27.15 Aligned_cols=53 Identities=30% Similarity=0.456 Sum_probs=37.1
Q ss_pred ccccceeeeecCCCCc---ccc------cchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy10967 22 YLPKSVGIFLGNDSEY---SDE------RNLQDLKEKVLQLQRESEEKNKIIENLRNEINAI 74 (199)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ai 74 (199)
+.+|.+|-.|++-..- -|| ..-+.|||-+.++|..-++.-|-|+.|++.|+..
T Consensus 64 fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 64 FVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5666666666542211 122 1236789999999999999999999999888753
No 207
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=39.40 E-value=2e+02 Score=23.08 Aligned_cols=90 Identities=12% Similarity=0.102 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhhhcCcccccch----hh--hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHH
Q psy10967 66 NLRNEINAIKQNRHVSYATKATQ----TE--DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNY 139 (199)
Q Consensus 66 ~~~~~l~aik~l~~~~~~~~aTa----~Q--a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~ 139 (199)
+...-..+++.|++.|+.+...- .. .++. ....+||--=-+-+.+.. . ......+++.+.++
T Consensus 131 ~~~~~~~~i~~l~~~G~~ialddfg~~~~~~~~l~-~l~~d~iKld~~~~~~~~----~-------~~~~~~~l~~l~~~ 198 (241)
T smart00052 131 DDESAVATLQRLRELGVRIALDDFGTGYSSLSYLK-RLPVDLLKIDKSFVRDLQ----T-------DPEDEAIVQSIIEL 198 (241)
T ss_pred ChHHHHHHHHHHHHCCCEEEEeCCCCcHHHHHHHH-hCCCCeEEECHHHHhhhc----c-------ChhHHHHHHHHHHH
Confidence 33333478999999999886432 11 1121 234555533111122110 1 12245778888888
Q ss_pred HHhcCCceEEEEcccCCHhhHHH--HhCCCEE
Q psy10967 140 YKKFGYKTVVMGASFRNTGEILA--LAGCDLM 169 (199)
Q Consensus 140 yk~~gykTkILAASFRNv~QV~a--LAGaDaV 169 (199)
.+..| .+|+|..+.+..|... ..|+|++
T Consensus 199 ~~~~~--~~via~gVe~~~~~~~l~~~Gi~~~ 228 (241)
T smart00052 199 AQKLG--LQVVAEGVETPEQLDLLRSLGCDYG 228 (241)
T ss_pred HHHCC--CeEEEecCCCHHHHHHHHHcCCCEE
Confidence 77654 7899999999999985 6899865
No 208
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=39.28 E-value=58 Score=28.69 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHhhhhc------CcccccchhhhHHHHHcCCcc-cccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy10967 71 INAIKQNRHV------SYATKATQTEDYLDVYNNNAD-GQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF 143 (199)
Q Consensus 71 l~aik~l~~~------~~~~~aTa~Qa~LA~~agA~Y-ISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~ 143 (199)
+.+|+.++++ |--|--|..|.-.|+.|||.| |||-+++=--- -..++.-..-||+-.-.++...++.-
T Consensus 52 ~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~-----~a~~~~ip~~PG~~TptEi~~Ale~G 126 (211)
T COG0800 52 LEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAK-----AANRYGIPYIPGVATPTEIMAALELG 126 (211)
T ss_pred HHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHH-----HHHhCCCcccCCCCCHHHHHHHHHcC
Q ss_pred CCceEEEEcccC-CHhhHHHHhC
Q psy10967 144 GYKTVVMGASFR-NTGEILALAG 165 (199)
Q Consensus 144 gykTkILAASFR-Nv~QV~aLAG 165 (199)
----|+-.|+-- .+..+.+++|
T Consensus 127 ~~~lK~FPa~~~Gg~~~~ka~~g 149 (211)
T COG0800 127 ASALKFFPAEVVGGPAMLKALAG 149 (211)
T ss_pred hhheeecCccccCcHHHHHHHcC
No 209
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=39.09 E-value=65 Score=28.12 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=42.2
Q ss_pred hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccC--CHhhHHH------
Q psy10967 91 DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFR--NTGEILA------ 162 (199)
Q Consensus 91 a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFR--Nv~QV~a------ 162 (199)
+-+|+++|||||-+. | . .+++.++++.. ....+. +.++.++ |.+++.+
T Consensus 166 ~~~a~e~GAD~vKt~------~-----~---------~~~~~l~~~~~---~~~ipV-~a~GGi~~~~~~~~l~~v~~~~ 221 (267)
T PRK07226 166 ARVAAELGADIVKTN------Y-----T---------GDPESFREVVE---GCPVPV-VIAGGPKTDTDREFLEMVRDAM 221 (267)
T ss_pred HHHHHHHCCCEEeeC------C-----C---------CCHHHHHHHHH---hCCCCE-EEEeCCCCCCHHHHHHHHHHHH
Confidence 567889999999542 3 1 24566665554 223454 5666788 8666663
Q ss_pred HhCCCEEeeCHHHHH
Q psy10967 163 LAGCDLMTIGPKLLE 177 (199)
Q Consensus 163 LAGaDaVTIpP~VLe 177 (199)
.+||+-+.++..+++
T Consensus 222 ~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 222 EAGAAGVAVGRNVFQ 236 (267)
T ss_pred HcCCcEEehhhhhhc
Confidence 589999998888774
No 210
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=39.06 E-value=2.4e+02 Score=25.48 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=52.6
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcC-CceEEEEcccCCHhhHHH--HhC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFG-YKTVVMGASFRNTGEILA--LAG 165 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~g-ykTkILAASFRNv~QV~a--LAG 165 (199)
.+++.++++|++ -+.+=|+|+.-+ .. .+..+.++++.+.++..| -+++|.+++==|.+-|.+ ..|
T Consensus 199 ~eal~~~~~~~~--~~d~I~lDn~~~-~~---------G~~~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~g 266 (302)
T cd01571 199 EEALKAAKALGD--KLDGVRLDTPSS-RR---------GVFRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVG 266 (302)
T ss_pred HHHHHHHHHhCC--CCcEEEECCCCC-CC---------CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcC
Confidence 367888877643 335557777621 11 256788999999999886 457888765558888885 689
Q ss_pred CCEEeeCHHH
Q psy10967 166 CDLMTIGPKL 175 (199)
Q Consensus 166 aDaVTIpP~V 175 (199)
+|++-|+-.+
T Consensus 267 vD~isvGs~~ 276 (302)
T cd01571 267 VDAFGVGTAI 276 (302)
T ss_pred CCEEECCccc
Confidence 9998777544
No 211
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=38.56 E-value=2.1e+02 Score=23.07 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=44.5
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-ccCCHhhHHH--HhC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRNTGEILA--LAG 165 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-SFRNv~QV~a--LAG 165 (199)
.|+..|.+.|++||.- |.+-.- +.+. ......|++.++++.+.+. +..|+|. .+ |.+.+.. ..|
T Consensus 107 ~e~~~a~~~g~dyi~~--~~v~~t-----~~k~-~~~~~~g~~~l~~~~~~~~----~~pv~a~GGI-~~~~~~~~~~~G 173 (196)
T TIGR00693 107 EELAEAEAEGADYIGF--GPIFPT-----PTKK-DPAPPAGVELLREIAATSI----DIPIVAIGGI-TLENAAEVLAAG 173 (196)
T ss_pred HHHHHHhHcCCCEEEE--CCccCC-----CCCC-CCCCCCCHHHHHHHHHhcC----CCCEEEECCc-CHHHHHHHHHcC
Confidence 6667788899999642 222211 0000 0001237888888766532 2445544 45 5666664 589
Q ss_pred CCEEeeCHHHHH
Q psy10967 166 CDLMTIGPKLLE 177 (199)
Q Consensus 166 aDaVTIpP~VLe 177 (199)
+|.+.+.-.+..
T Consensus 174 ~~gva~~~~i~~ 185 (196)
T TIGR00693 174 ADGVAVVSAIMQ 185 (196)
T ss_pred CCEEEEhHHhhC
Confidence 999999988763
No 212
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=37.97 E-value=1.5e+02 Score=26.69 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhhhc--Cccccc-ch-hhhHH--HHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHH
Q psy10967 64 IENLRNEINAIKQNRHV--SYATKA-TQ-TEDYL--DVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIY 137 (199)
Q Consensus 64 ~~~~~~~l~aik~l~~~--~~~~~a-Ta-~Qa~L--A~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~ 137 (199)
.+.|+++|+.+|.+... |+++.. +- .+..+ +++.|++.|+- .+ | .| .++.
T Consensus 47 ~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~------~~-----g--------~p-----~~~i 102 (307)
T TIGR03151 47 PDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTT------GA-----G--------NP-----GKYI 102 (307)
T ss_pred HHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEE------cC-----C--------Cc-----HHHH
Confidence 46778888888876544 444322 11 22222 34677777763 12 3 33 2355
Q ss_pred HHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEee
Q psy10967 138 NYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 171 (199)
Q Consensus 138 ~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTI 171 (199)
+.++.+| .+||+ -..++++... .+|+|.+++
T Consensus 103 ~~lk~~g--~~v~~-~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 103 PRLKENG--VKVIP-VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHcC--CEEEE-EcCCHHHHHHHHHcCCCEEEE
Confidence 5666666 55663 5566776663 689999987
No 213
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=37.58 E-value=84 Score=27.87 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=28.7
Q ss_pred HHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHH
Q psy10967 138 NYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEE 178 (199)
Q Consensus 138 ~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeq 178 (199)
+.-+...--.-+.++.+|+.+|+.+ .+|||.+.++-.+-+.
T Consensus 175 ~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 175 AAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED 217 (230)
T ss_dssp HHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH
T ss_pred HHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc
Confidence 3334444455788999999999997 6999999998665444
No 214
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=37.52 E-value=58 Score=29.26 Aligned_cols=114 Identities=11% Similarity=0.069 Sum_probs=74.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHH
Q psy10967 56 ESEEKNKIIENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVV 131 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~ 131 (199)
-+|-|+.+..+...=-+.|+.|++.||.|.-=. .|.=.|.+.||+.|=-+-|.--+-+.. . ...-++
T Consensus 101 TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG~yA~a~~~--~-------~~~el~ 171 (239)
T PRK05265 101 TTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTGPYADAKTE--A-------EAAELE 171 (239)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCc--c-------hHHHHH
Confidence 356677776666555578999999999987333 888899999999999988887664211 0 111244
Q ss_pred HHHHHHHHHHhcCCceEEEEc---ccCCHhhHHHHhCCCEEeeCHHHHHHHh
Q psy10967 132 SVTKIYNYYKKFGYKTVVMGA---SFRNTGEILALAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 132 vVk~I~~~yk~~gykTkILAA---SFRNv~QV~aLAGaDaVTIpP~VLeqL~ 180 (199)
-++...++-.+.| -+|=|+ ...|+..+..+-+.+=+-|+-.++.+.+
T Consensus 172 ~~~~aa~~a~~lG--L~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsiia~Al 221 (239)
T PRK05265 172 RIAKAAKLAASLG--LGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARAL 221 (239)
T ss_pred HHHHHHHHHHHcC--CEEecCCCCCHHhHHHHhhCCCCeEEccCHHHHHHHH
Confidence 4555555555555 344443 4556666555666666777777765544
No 215
>PLN02765 pyruvate kinase
Probab=36.55 E-value=76 Score=31.45 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=34.4
Q ss_pred hhhH--HHHHcCCccccc-chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC-ceEEEE-----cccCCHhh
Q psy10967 89 TEDY--LDVYNNNADGQD-ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMG-----ASFRNTGE 159 (199)
Q Consensus 89 ~Qa~--LA~~agA~YISP-FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy-kTkILA-----ASFRNv~Q 159 (199)
.+.+ .|+..|.|||+. ||..-+|. .++.++++.+|. +.+|+| -+++|.++
T Consensus 209 ~~di~~f~~~~~vD~ia~SFVr~a~DI---------------------~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~e 267 (526)
T PLN02765 209 KEVISTWGVPNKIDFLSLSYTRHAEDV---------------------REAREFLSSLGLSQTQIFAKIENVEGLTHFDE 267 (526)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCHHHH---------------------HHHHHHHHhcCCCCCcEEEEECCHHHHHHHHH
Confidence 5554 678999999987 76655554 455556666665 566665 45666666
Q ss_pred HH
Q psy10967 160 IL 161 (199)
Q Consensus 160 V~ 161 (199)
|+
T Consensus 268 Ii 269 (526)
T PLN02765 268 IL 269 (526)
T ss_pred HH
Confidence 65
No 216
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=36.36 E-value=71 Score=27.63 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=42.2
Q ss_pred hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccC--CHhhHHH------
Q psy10967 91 DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFR--NTGEILA------ 162 (199)
Q Consensus 91 a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFR--Nv~QV~a------ 162 (199)
+-.|.++|||||..- + . .|++.++++.+. -..+. +.++.++ +.++..+
T Consensus 162 ~~~a~~~GADyikt~------~-----~---------~~~~~l~~~~~~---~~iPV-va~GGi~~~~~~~~~~~i~~~~ 217 (258)
T TIGR01949 162 ARLGAELGADIVKTP------Y-----T---------GDIDSFRDVVKG---CPAPV-VVAGGPKTNSDREFLQMIKDAM 217 (258)
T ss_pred HHHHHHHCCCEEecc------C-----C---------CCHHHHHHHHHh---CCCcE-EEecCCCCCCHHHHHHHHHHHH
Confidence 467788999999851 2 1 257777776653 23444 4447788 5555542
Q ss_pred HhCCCEEeeCHHHHH
Q psy10967 163 LAGCDLMTIGPKLLE 177 (199)
Q Consensus 163 LAGaDaVTIpP~VLe 177 (199)
.+|++-+.++..+++
T Consensus 218 ~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 218 EAGAAGVAVGRNIFQ 232 (258)
T ss_pred HcCCcEEehhhHhhc
Confidence 599999999888764
No 217
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=35.91 E-value=79 Score=27.69 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 128 PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 128 dGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
...++|+++.+... + -.-+.+..+|+++|+.+ .+|||.+.++-.+.+
T Consensus 161 ~~~e~I~~v~~~~~--~-~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 161 GPPEVVRAVKKVLG--D-TPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred CCHHHHHHHHHhcC--C-CCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 34667777766432 2 35567999999999997 469999999876654
No 218
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=35.78 E-value=1e+02 Score=27.19 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHH
Q psy10967 128 PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEE 178 (199)
Q Consensus 128 dGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeq 178 (199)
+..++++++.+.. +.-.-+++..+|+.+|+.+ .+|||.+.|+-.+.+.
T Consensus 170 ~~~e~I~~v~~~~---~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d 219 (232)
T PRK04169 170 VPPEMVKAVKKAL---DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEED 219 (232)
T ss_pred CCHHHHHHHHHhc---CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhC
Confidence 3467788777653 2225677999999999997 6999999999887654
No 219
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=35.64 E-value=2.7e+02 Score=25.21 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=23.4
Q ss_pred EEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 148 VVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 148 kILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
.|-.+.+++.+++.+ ++|||+|-|.-.++.
T Consensus 240 Iig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~ 271 (325)
T cd04739 240 LAASGGVHDAEDVVKYLLAGADVVMTTSALLR 271 (325)
T ss_pred EEEECCCCCHHHHHHHHHcCCCeeEEehhhhh
Confidence 444678999999997 799999988754443
No 220
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.25 E-value=1.5e+02 Score=24.09 Aligned_cols=58 Identities=22% Similarity=0.387 Sum_probs=40.7
Q ss_pred cccccccccceeeeecCCCCcc--cccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy10967 17 NLSCKYLPKSVGIFLGNDSEYS--DERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIK 75 (199)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik 75 (199)
-+.||-.-|. -||+-|.++.. +...+.++..++.+|+....+=-.-+..|+.+|+.+.
T Consensus 47 ~i~~K~~GKq-kiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 47 KIVEKEYGKQ-KIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred Ceeeeeecce-EEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567766666 57888877766 4556778887888887777766666777776666554
No 221
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=35.03 E-value=60 Score=27.70 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 128 PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 128 dGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
.-++=|+++.+++.++|+++.|..=.==|.+.+-. .+|+|.+.++-.+++
T Consensus 148 ~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 148 EVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFK 199 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhC
Confidence 35667899999999999999998533333344443 699999999987764
No 222
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=35.03 E-value=1.1e+02 Score=27.01 Aligned_cols=49 Identities=10% Similarity=-0.039 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
.++=|+++.++++++|+++.|.+=.==|.+.+.. .+|+|.+.++-.++.
T Consensus 162 ~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~ 212 (228)
T PRK08091 162 ILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFS 212 (228)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhhC
Confidence 4556888889999999988777655444556653 699999999977763
No 223
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=34.84 E-value=93 Score=27.33 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=44.4
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGC 166 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGa 166 (199)
.|...|..+|||.|.--.. .-+.+.++++.+..+..|..+ | +=++|..++.. .+|+
T Consensus 124 ~qi~~a~~~GAD~VlLi~~-------------------~l~~~~l~~li~~a~~lGl~~--l-vevh~~~E~~~A~~~ga 181 (260)
T PRK00278 124 YQIYEARAAGADAILLIVA-------------------ALDDEQLKELLDYAHSLGLDV--L-VEVHDEEELERALKLGA 181 (260)
T ss_pred HHHHHHHHcCCCEEEEEec-------------------cCCHHHHHHHHHHHHHcCCeE--E-EEeCCHHHHHHHHHcCC
Confidence 6999999999999886221 112367888888888887443 3 34566766653 5799
Q ss_pred CEEeeCH
Q psy10967 167 DLMTIGP 173 (199)
Q Consensus 167 DaVTIpP 173 (199)
|++-+.+
T Consensus 182 diIgin~ 188 (260)
T PRK00278 182 PLIGINN 188 (260)
T ss_pred CEEEECC
Confidence 9987654
No 224
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=34.75 E-value=1.7e+02 Score=27.52 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=41.4
Q ss_pred hhhHHHHHcCCcccccchhhhhhh-cccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhC
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVR-YVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAG 165 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDw-ykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAG 165 (199)
..+-.++++|++.|+-. ||.-+- |....+ ++ .++.++.+.. +..|+++.+.+.+++.. .+|
T Consensus 146 e~a~~l~eAGad~I~ih-grt~~q~~~sg~~--------~p-----~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~aG 209 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQ-GTLVSAEHVSTSG--------EP-----LNLKEFIGEL--DVPVIAGGVNDYTTALHLMRTG 209 (369)
T ss_pred HHHHHHHHCCCCEEEEe-ccchhhhccCCCC--------CH-----HHHHHHHHHC--CCCEEEeCCCCHHHHHHHHHcC
Confidence 33456679999998864 444322 101111 22 2455555554 56788878888888874 589
Q ss_pred CCEEeeC
Q psy10967 166 CDLMTIG 172 (199)
Q Consensus 166 aDaVTIp 172 (199)
||.|.++
T Consensus 210 aDgV~~G 216 (369)
T TIGR01304 210 AAGVIVG 216 (369)
T ss_pred CCEEEEC
Confidence 9997644
No 225
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=34.52 E-value=1.7e+02 Score=25.68 Aligned_cols=121 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhhcCc-ccccch-----hhhH---------HHHHcCCccccc
Q psy10967 45 DLKEKVLQLQRESEEKNKIIEN-----LRNEINAIKQNRHVSY-ATKATQ-----TEDY---------LDVYNNNADGQD 104 (199)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~aik~l~~~~~-~~~aTa-----~Qa~---------LA~~agA~YISP 104 (199)
...+|+-=.+...+.|.+.||- =.....+++.+++.+. ++...+ ..++ .|+.+|.+.|.-
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i 97 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTI 97 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEEEE
Q ss_pred c-----------hhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEccc----CCHhhHHH-------
Q psy10967 105 E-----------NAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASF----RNTGEILA------- 162 (199)
Q Consensus 105 F-----------VGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASF----RNv~QV~a------- 162 (199)
| .|+-.++ -++.++++.++.+.+|+...+-+-.| |...+...
T Consensus 98 ~~~~sd~~~~~~~~~~~~~----------------~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~ 161 (273)
T cd07941 98 FGKSWDLHVTEALGTTLEE----------------NLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAA 161 (273)
T ss_pred EEcCCHHHHHHHcCCCHHH----------------HHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHH
Q ss_pred HhCCCEEeeC-------HHHHHHHhc
Q psy10967 163 LAGCDLMTIG-------PKLLEELEN 181 (199)
Q Consensus 163 LAGaDaVTIp-------P~VLeqL~~ 181 (199)
.+|+|.+.++ |.-+.++.+
T Consensus 162 ~~g~~~i~l~DT~G~~~P~~v~~lv~ 187 (273)
T cd07941 162 EAGADWLVLCDTNGGTLPHEIAEIVK 187 (273)
T ss_pred hCCCCEEEEecCCCCCCHHHHHHHHH
No 226
>PRK09206 pyruvate kinase; Provisional
Probab=33.94 E-value=79 Score=30.76 Aligned_cols=20 Identities=5% Similarity=-0.343 Sum_probs=15.3
Q ss_pred HHHHcCCccccc-chhhhhhh
Q psy10967 93 LDVYNNNADGQD-ENAKHLVR 112 (199)
Q Consensus 93 LA~~agA~YISP-FVGRIdDw 112 (199)
.|++.|.|||+- ||.+-+|.
T Consensus 180 f~~~~~vD~ia~SFVr~~~Dv 200 (470)
T PRK09206 180 FGCEQGVDFVAASFIRKRSDV 200 (470)
T ss_pred HHHHcCCCEEEEcCCCCHHHH
Confidence 578999999986 77665544
No 227
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=33.67 E-value=39 Score=29.14 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=23.6
Q ss_pred ceEEEEcc-cCCHhhHHH--HhCCCEEeeCHH
Q psy10967 146 KTVVMGAS-FRNTGEILA--LAGCDLMTIGPK 174 (199)
Q Consensus 146 kTkILAAS-FRNv~QV~a--LAGaDaVTIpP~ 174 (199)
+-.++++| .++.++..+ ..|+|+++++|-
T Consensus 109 ~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 109 PKMIVGFGNLRDRHGAMEIGELRPDYLFFGKL 140 (221)
T ss_pred CCCEEEecCCCCHHHHHHhhhcCCCEEEECCC
Confidence 55789998 677887775 589999999983
No 228
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=33.33 E-value=2.3e+02 Score=26.80 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=55.4
Q ss_pred cchhhhHHHHHcCCcccccch--hhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE-cccCCHhhHHH
Q psy10967 86 ATQTEDYLDVYNNNADGQDEN--AKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG-ASFRNTGEILA 162 (199)
Q Consensus 86 aTa~Qa~LA~~agA~YISPFV--GRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA-ASFRNv~QV~a 162 (199)
+|..++---+.||||.|=-=+ |.+.-- +.....--|=+..|.+..+.-+.+| ..|+| +.+|+..+|..
T Consensus 160 ~T~e~a~~Li~aGAD~vKVGIGpGSiCtT-------r~vtGvG~PQltAV~~~a~~a~~~g--vpiIADGGi~~sGDI~K 230 (346)
T PRK05096 160 VTGEMVEELILSGADIVKVGIGPGSVCTT-------RVKTGVGYPQLSAVIECADAAHGLG--GQIVSDGGCTVPGDVAK 230 (346)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCccccC-------ccccccChhHHHHHHHHHHHHHHcC--CCEEecCCcccccHHHH
Confidence 455455555689999875211 222221 0111122355566677776666554 34554 88999999995
Q ss_pred --HhCCCEEeeCHHHHHHHhcCCCcc
Q psy10967 163 --LAGCDLMTIGPKLLEELENSTTPV 186 (199)
Q Consensus 163 --LAGaDaVTIpP~VLeqL~~~p~~v 186 (199)
.+|||+|-++ .+|..-.++|+++
T Consensus 231 AlaaGAd~VMlG-sllAGt~EsPGe~ 255 (346)
T PRK05096 231 AFGGGADFVMLG-GMLAGHEESGGEI 255 (346)
T ss_pred HHHcCCCEEEeC-hhhcCcccCCCcE
Confidence 5799999888 5666656667665
No 229
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=32.12 E-value=1e+02 Score=26.70 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcccCCHhhHHHH--hCCCEEeeC
Q psy10967 130 VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILAL--AGCDLMTIG 172 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykTkILAASFRNv~QV~aL--AGaDaVTIp 172 (199)
.++++++.+.. --..+++..+|+.+|+.++ +|||.+.++
T Consensus 165 ~e~i~~Vk~~~----~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 165 PETISLVKKAS----GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHhh----CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 56677776654 2578899999999999984 799998764
No 230
>PRK11059 regulatory protein CsrD; Provisional
Probab=31.76 E-value=2.2e+02 Score=27.61 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhhhcCcccccch------hhhHHHHHcCCccccc---chhhhhhhcccccCCCCCCCCCCChHHHH
Q psy10967 63 IIENLRNEINAIKQNRHVSYATKATQ------TEDYLDVYNNNADGQD---ENAKHLVRYVANTGTKTYAPTEDPGVVSV 133 (199)
Q Consensus 63 ~~~~~~~~l~aik~l~~~~~~~~aTa------~Qa~LA~~agA~YISP---FVGRIdDwykk~~G~~~~~~~~ddGV~vV 133 (199)
++++...-...++.|++.|+++.--. .=.|+. .-..+||-- ||..+++ ....-.+|
T Consensus 528 ~~~~~~~~~~~l~~L~~~G~~iaiddfG~g~~s~~~L~-~l~~d~iKid~s~v~~i~~--------------~~~~~~~v 592 (640)
T PRK11059 528 VCQHISRLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIK-ELNVELIKLHPSLVRNIHK--------------RTENQLFV 592 (640)
T ss_pred hhcCHHHHHHHHHHHHHCCCEEEEECCCCCcccHHHHH-hCCCCEEEECHHHHhhhhc--------------CchhHHHH
Confidence 34445555678889999999887543 011221 223454432 3322222 12345678
Q ss_pred HHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEE
Q psy10967 134 TKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLM 169 (199)
Q Consensus 134 k~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaV 169 (199)
+.+.++.+.. .++|+|-.+.|.+|+.. ..|||++
T Consensus 593 ~sli~~a~~~--~i~viAegVEt~~~~~~l~~lGvd~~ 628 (640)
T PRK11059 593 RSLVGACAGT--ETQVFATGVESREEWQTLQELGVSGG 628 (640)
T ss_pred HHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHhCCCee
Confidence 8888887765 58999999999999996 6999965
No 231
>PLN02428 lipoic acid synthase
Probab=31.73 E-value=1.3e+02 Score=28.23 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHhcCCc--eEEEEcccCCHhhHHH---HhCCCEEeeCHHHHHHH
Q psy10967 127 DPGVVSVTKIYNYYKKFGYK--TVVMGASFRNTGEILA---LAGCDLMTIGPKLLEEL 179 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gyk--TkILAASFRNv~QV~a---LAGaDaVTIpP~VLeqL 179 (199)
|.|.+-+.++.+.++..... .+++.++|+.-.+.++ .+|+|.++..++.-.++
T Consensus 162 D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL 219 (349)
T PLN02428 162 DGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERL 219 (349)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHH
Confidence 56888888999999886544 4455567884344443 69999988776653333
No 232
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=31.56 E-value=1.2e+02 Score=27.09 Aligned_cols=134 Identities=10% Similarity=0.067 Sum_probs=76.1
Q ss_pred CCCCcccccchHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHhhhhc-Ccccccch--hhh-HHHHHc
Q psy10967 33 NDSEYSDERNLQDLKEKVLQLQRESEEKNKIIEN-----------LRNEINAIKQNRHV-SYATKATQ--TED-YLDVYN 97 (199)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~aik~l~~~-~~~~~aTa--~Qa-~LA~~a 97 (199)
-|.+.+.. .-=...+|+-=.+...+.|++.||- .+..-++++.+++. +..+.+-. .++ =.|+++
T Consensus 13 RDG~Q~~~-~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~~~~~ie~A~~~ 91 (287)
T PRK05692 13 RDGLQNEK-RFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTPNLKGLEAALAA 91 (287)
T ss_pred CccccCcC-CCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEecCHHHHHHHHHc
Confidence 34555443 2234567777778888999998885 12234555555442 33332222 233 356788
Q ss_pred CCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEE-EEccc------C-CHhhHHH------H
Q psy10967 98 NNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVV-MGASF------R-NTGEILA------L 163 (199)
Q Consensus 98 gA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkI-LAASF------R-Nv~QV~a------L 163 (199)
|.+.|.-|+.--+-..+++-+ .....-++.++++.++.+.+|..+.. +.-+| | +++.+.+ .
T Consensus 92 g~~~v~i~~~~s~~~~~~n~~-----~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
T PRK05692 92 GADEVAVFASASEAFSQKNIN-----CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFA 166 (287)
T ss_pred CCCEEEEEEecCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 999988886543221112212 11123567788888999999987652 22223 2 3444442 5
Q ss_pred hCCCEEeeC
Q psy10967 164 AGCDLMTIG 172 (199)
Q Consensus 164 AGaDaVTIp 172 (199)
+|+|.+.++
T Consensus 167 ~G~d~i~l~ 175 (287)
T PRK05692 167 LGCYEISLG 175 (287)
T ss_pred cCCcEEEec
Confidence 899998876
No 233
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.53 E-value=3.4e+02 Score=23.40 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 130 VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
++.++++.+.+. .--.-|-.+.+++.+++.+ .+|||.|-+.-.++.
T Consensus 230 ~~~v~~i~~~~~--~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 230 LRWVARLAARLQ--LDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHHHHHHhcC--CCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 444555555432 0134566788999999997 689999888766554
No 234
>PRK06801 hypothetical protein; Provisional
Probab=31.45 E-value=2.1e+02 Score=25.93 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=78.5
Q ss_pred CCCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh------cCcccccchhhhHHHH-HcCCcccccc
Q psy10967 33 NDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRH------VSYATKATQTEDYLDV-YNNNADGQDE 105 (199)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik~l~~------~~~~~~aTa~Qa~LA~-~agA~YISPF 105 (199)
..|.++.|.|+..-++-+ ++ +|.-|.- +--||-+|..-.. .|..+..+..|+.-.+ +.|+||+++=
T Consensus 104 D~S~l~~eeNi~~t~~v~-~~--a~~~gv~----VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAva 176 (286)
T PRK06801 104 DGSTLEYEENVRQTREVV-KM--CHAVGVS----VEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVA 176 (286)
T ss_pred cCCCCCHHHHHHHHHHHH-HH--HHHcCCe----EEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEec
Confidence 446777788877554433 22 3344442 3233334432111 0211121226666666 7899999998
Q ss_pred hhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHH
Q psy10967 106 NAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEEL 179 (199)
Q Consensus 106 VGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL 179 (199)
+|-.--.|+..+ ..+.+.+++|.+.. +.+.-+.++|==..+++.. .+|++=+-|.-++....
T Consensus 177 iGt~Hg~y~~~~---------~l~~e~l~~i~~~~---~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~ 240 (286)
T PRK06801 177 IGNAHGKYKGEP---------KLDFARLAAIHQQT---GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAA 240 (286)
T ss_pred cCCCCCCCCCCC---------CCCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHH
Confidence 887776553322 24788888887754 5677777787666777775 69999999998885443
No 235
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=31.41 E-value=1.4e+02 Score=26.19 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC-HHHHH
Q psy10967 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG-PKLLE 177 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp-P~VLe 177 (199)
.++=|+++.++++.+++++.|.+=.==|.+.+.. .+|||.+.++ ..++.
T Consensus 152 ~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 152 MLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcC
Confidence 4456888888989999998888765444666654 6999999998 44663
No 236
>PRK14057 epimerase; Provisional
Probab=31.05 E-value=1.4e+02 Score=26.85 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 128 PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 128 dGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
..++=|+++.++++.+|+++.|.+=.==|.+.+-. .+|+|.+.++-.++.
T Consensus 175 ~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~ 226 (254)
T PRK14057 175 DLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFR 226 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhC
Confidence 34555888888999999998887755445566654 699999999987763
No 237
>PF12209 SAC3: Leucine permease transcriptional regulator helical domain; InterPro: IPR024293 This domain is found in fungal proteins, including the nuclear mRNA export protein SAC3. It has been suggested this domain provides a scaffold within the yeast Sac3:Cdc31:Sus1:Thp1 (TREX-2) complex to integrate interactions between protein complexes to facilitate the coupling of transcription and mRNA export during gene expression [].; PDB: 3FWC_N 3FWB_B.
Probab=30.93 E-value=84 Score=23.39 Aligned_cols=31 Identities=26% Similarity=0.522 Sum_probs=21.6
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy10967 41 RNLQDLKEKVLQLQRESEEKNKIIENLRNEI 71 (199)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 71 (199)
..|+.+-+++++-+....+..++|+.|.++|
T Consensus 16 ~el~~~l~~~l~~~n~~~~R~~iI~sLs~EL 46 (79)
T PF12209_consen 16 SELSKILKNLLRRQNARKERKQIIDSLSEEL 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456666777777777888889999999887
No 238
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=30.69 E-value=48 Score=24.78 Aligned_cols=46 Identities=7% Similarity=0.170 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHH
Q psy10967 132 SVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEEL 179 (199)
Q Consensus 132 vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL 179 (199)
+..++.++++.+|++.+|.+.++...... .-.+|++..++.+-.++
T Consensus 19 ~~~ki~~~l~~~gi~~~v~~~~~~e~~~~--~~~~D~iv~t~~~~~~~ 64 (94)
T PRK10310 19 AAEEIKELCQSHNIPVELIQCRVNEIETY--MDGVHLICTTARVDRSF 64 (94)
T ss_pred HHHHHHHHHHHCCCeEEEEEecHHHHhhh--cCCCCEEEECCcccccc
Confidence 35899999999999999999888765432 35689987777665543
No 239
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=30.67 E-value=2.2e+02 Score=25.46 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCC-ceEEEEcccC--CHhhHHH------HhCCCEE
Q psy10967 130 VVSVTKIYNYYKKFGY-KTVVMGASFR--NTGEILA------LAGCDLM 169 (199)
Q Consensus 130 V~vVk~I~~~yk~~gy-kTkILAASFR--Nv~QV~a------LAGaDaV 169 (199)
.+-+.+-.+.++..|+ +.+|-.--++ |.+++.+ -.|++..
T Consensus 139 ~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 139 LERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEE
Confidence 4444444455677777 5555333333 6677753 3577664
No 240
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=30.66 E-value=1.7e+02 Score=19.72 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Q psy10967 42 NLQDLKEKVLQLQR--ESEEKNKIIENLRNEINAI 74 (199)
Q Consensus 42 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ai 74 (199)
.++.+|+.+|+--| .+.-+..||+-++.+|.-+
T Consensus 4 dle~~KqEIL~EvrkEl~K~K~EIIeA~~~eL~r~ 38 (40)
T PF08776_consen 4 DLERLKQEILEEVRKELQKVKEEIIEAIRQELSRR 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666766665322 3455667888888887644
No 241
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=30.62 E-value=1.3e+02 Score=27.56 Aligned_cols=122 Identities=12% Similarity=0.048 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH----HH-HHHHHHHhhhhcCcccccch-----hhhH-HHHHcCCcccccchhhhhhhc
Q psy10967 45 DLKEKVLQLQRESEEKNKIIEN----LR-NEINAIKQNRHVSYATKATQ-----TEDY-LDVYNNNADGQDENAKHLVRY 113 (199)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~----~~-~~l~aik~l~~~~~~~~aTa-----~Qa~-LA~~agA~YISPFVGRIdDwy 113 (199)
...+|+-=.+...+.|++.||- .. ++.++++.+++.+-+++.++ .+++ .|..+|++.|.-|+.- .|+.
T Consensus 21 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~-Sd~~ 99 (365)
T TIGR02660 21 TAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPV-SDLQ 99 (365)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEcc-CHHH
Confidence 3456666677788889888875 22 33467777776654443333 3333 5678899988877642 3321
Q ss_pred ccc-cCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE--cccCCHhhHHH------HhCCCEEeeC
Q psy10967 114 VAN-TGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILA------LAGCDLMTIG 172 (199)
Q Consensus 114 kk~-~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA--ASFRNv~QV~a------LAGaDaVTIp 172 (199)
.+. -+ ...+..++.+.+..++.+.+|....+-. ++--+++.+.+ .+|+|.+.++
T Consensus 100 ~~~~~~-----~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~ 162 (365)
T TIGR02660 100 IEAKLR-----KDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFA 162 (365)
T ss_pred HHHHhC-----cCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEc
Confidence 111 01 0113457778888888899997655422 22223444442 4899998776
No 242
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=30.62 E-value=1.6e+02 Score=25.51 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCceEEEE--cccCCHhhHHH------HhCCCEEeeC
Q psy10967 130 VVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILA------LAGCDLMTIG 172 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykTkILA--ASFRNv~QV~a------LAGaDaVTIp 172 (199)
+..+++..++.+..|+.+.+=. ++--+++.+.+ .+|+|.++++
T Consensus 111 ~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 161 (263)
T cd07943 111 ADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT 161 (263)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 3467888888999998765443 66566777763 4899998876
No 243
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=30.59 E-value=2.8e+02 Score=22.17 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=53.0
Q ss_pred HHHHHHhhhhcCcccccch----hhhHH-HHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcC
Q psy10967 70 EINAIKQNRHVSYATKATQ----TEDYL-DVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFG 144 (199)
Q Consensus 70 ~l~aik~l~~~~~~~~aTa----~Qa~L-A~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~g 144 (199)
-.+.++.+++.|+++...- ...+- ......+||--=-.-+.+. . ........++.+.+..+..
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~-----~------~~~~~~~~l~~l~~~~~~~- 201 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDI-----E------TDPEDRAIVRAIIALAHSL- 201 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhH-----h------cChhhHHHHHHHHHHHHHC-
Confidence 4568888999999877432 11111 1122344443211111111 0 0123467788888887775
Q ss_pred CceEEEEcccCCHhhHHH--HhCCCEE
Q psy10967 145 YKTVVMGASFRNTGEILA--LAGCDLM 169 (199)
Q Consensus 145 ykTkILAASFRNv~QV~a--LAGaDaV 169 (199)
..+|+|..+.|..+... ..|+|++
T Consensus 202 -~~~via~gVe~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 202 -GLKVVAEGVETEEQLELLRELGCDYV 227 (240)
T ss_pred -CCeEEEEecCCHHHHHHHHHcCCCee
Confidence 58999999999999985 6899865
No 244
>KOG4809|consensus
Probab=30.24 E-value=79 Score=32.01 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=28.7
Q ss_pred cccchHHHHHHHHHHHHHhHHHHHHHHHHH--------HHHHHHHhhhhcCccc
Q psy10967 39 DERNLQDLKEKVLQLQRESEEKNKIIENLR--------NEINAIKQNRHVSYAT 84 (199)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~aik~l~~~~~~~ 84 (199)
-++..+||||||-+||++--++---.-.|+ .|++-=+.|+...|..
T Consensus 336 ~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIal 389 (654)
T KOG4809|consen 336 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAL 389 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 357789999999999996655543333333 3444445555555544
No 245
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=30.08 E-value=1.3e+02 Score=26.39 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHH
Q psy10967 130 VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEE 178 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeq 178 (199)
.++|+.+.+... + -.-+.+..+|+.+|+.+ .+|||.+.++-.+.+.
T Consensus 167 ~e~i~~v~~~~~--~-~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 167 PELVAEVKKVLD--K-ARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred HHHHHHHHHHcC--C-CCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 455666665442 2 34457999999999997 4599999999877654
No 246
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.76 E-value=1.2e+02 Score=25.68 Aligned_cols=49 Identities=6% Similarity=-0.140 Sum_probs=30.6
Q ss_pred hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE
Q psy10967 91 DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG 151 (199)
Q Consensus 91 a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA 151 (199)
.=+++++|-++|-.+.++-..+. + +-...-++++.+..+.+|.+.-.+.
T Consensus 19 l~~~~~~G~~~vEl~~~~~~~~~----------~--~~~~~~~~~l~~~~~~~gl~v~s~~ 67 (275)
T PRK09856 19 FRDASELGYDGIEIWGGRPHAFA----------P--DLKAGGIKQIKALAQTYQMPIIGYT 67 (275)
T ss_pred HHHHHHcCCCEEEEccCCccccc----------c--ccCchHHHHHHHHHHHcCCeEEEec
Confidence 34677899999988644322220 0 1112457888889999998765543
No 247
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=29.59 E-value=1.4e+02 Score=25.61 Aligned_cols=48 Identities=13% Similarity=0.260 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 126 EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 126 ~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
..+..++++++.+.. . -.-+.++.+++++|+.+ .+|+|.+.++-.+.+
T Consensus 169 ~G~d~eli~~i~~~~---~-~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 169 KGPNLELLTKTLELS---E-HPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred CCCCHHHHHHHHhhC---C-CCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 456788888887653 1 24566777999999986 479999999877653
No 248
>KOG2368|consensus
Probab=29.44 E-value=1.2e+02 Score=28.05 Aligned_cols=151 Identities=19% Similarity=0.284 Sum_probs=98.1
Q ss_pred cccccccccceeee-ecCCCCcccccchHHHHHHHHHHHHHhHHHHHHHHHH--------------HHHHHHHHhhhhcC
Q psy10967 17 NLSCKYLPKSVGIF-LGNDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENL--------------RNEINAIKQNRHVS 81 (199)
Q Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~aik~l~~~~ 81 (199)
|-+-+-+||-|-|. +|...-...|.|+---.-||.-++|.||.|+.+||+- .+-+|.|+++--..
T Consensus 9 ~~a~~t~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~~~Gv~ 88 (316)
T KOG2368|consen 9 NRAYSTAPKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRKFPGVS 88 (316)
T ss_pred hhhhhcccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhcCCCcc
Confidence 34456678888875 6777777888888888889999999999999999863 35678888888888
Q ss_pred cccccchhhhHH-HHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhc-----CCceEEEEcccC
Q psy10967 82 YATKATQTEDYL-DVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKF-----GYKTVVMGASFR 155 (199)
Q Consensus 82 ~~~~aTa~Qa~L-A~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~-----gykTkILAASFR 155 (199)
|.+..--.++|- |..|||.=|+-|=.--|.+.+++-+ ....+.++-.+.+...-+.+ ||-+-+++.-..
T Consensus 89 yPVLtPNlkGf~~AvaaGa~EvavFgaASe~FslkNiN-----ctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPye 163 (316)
T KOG2368|consen 89 YPVLTPNLKGFEAAVAAGAEEVAVFGAASEAFSLKNIN-----CTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYE 163 (316)
T ss_pred ccccCcchhhHHHHHhcCceeEEeeehhhhhhhhccCC-----ccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCcc
Confidence 888744455554 4478999999987666655444322 22222333344444444444 455566666554
Q ss_pred C---HhhH---HH---HhCCCEEeeC
Q psy10967 156 N---TGEI---LA---LAGCDLMTIG 172 (199)
Q Consensus 156 N---v~QV---~a---LAGaDaVTIp 172 (199)
. +..| .+ -+||--+.++
T Consensus 164 G~v~P~kVa~V~k~ly~mGCyEiSLG 189 (316)
T KOG2368|consen 164 GAVQPSKVAEVVKKLYEMGCYEISLG 189 (316)
T ss_pred CCcCHHHHHHHHHHHHhCCcEEEecc
Confidence 2 2223 32 3777655443
No 249
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=29.32 E-value=1.6e+02 Score=26.31 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=54.9
Q ss_pred hhhcCcccccch---hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcc
Q psy10967 77 NRHVSYATKATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGAS 153 (199)
Q Consensus 77 l~~~~~~~~aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAAS 153 (199)
-++.|..+..-. .+.-.|..+||+.|.- ++| + +...+.| ++...++...+... .+.|-..+
T Consensus 154 a~~lGle~lVEVh~~~El~~al~~~a~iiGI-----NnR-----d---L~tf~vd-~~~~~~l~~~ip~~--~~~iseSG 217 (254)
T PF00218_consen 154 AHSLGLEALVEVHNEEELERALEAGADIIGI-----NNR-----D---LKTFEVD-LNRTEELAPLIPKD--VIVISESG 217 (254)
T ss_dssp HHHTT-EEEEEESSHHHHHHHHHTT-SEEEE-----ESB-----C---TTTCCBH-THHHHHHHCHSHTT--SEEEEESS
T ss_pred HHHcCCCeEEEECCHHHHHHHHHcCCCEEEE-----eCc-----c---ccCcccC-hHHHHHHHhhCccc--eeEEeecC
Confidence 344466655444 5666677899987764 333 2 2222232 56667777777744 67888889
Q ss_pred cCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 154 FRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 154 FRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
+++++++.. .+|+|++-|+..+++
T Consensus 218 I~~~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 218 IKTPEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp -SSHHHHHHHCTTT-SEEEESHHHHT
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 999999997 589999999987754
No 250
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=29.30 E-value=1.3e+02 Score=25.41 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=45.4
Q ss_pred hHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC--ceEEEEc-cc------CCHhhHH
Q psy10967 91 DYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY--KTVVMGA-SF------RNTGEIL 161 (199)
Q Consensus 91 a~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy--kTkILAA-SF------RNv~QV~ 161 (199)
+-+|+++|||||=-..| + . . ......++.+.+..+.... +++|+++ .. |..+++.
T Consensus 152 ~ria~e~GaD~vKt~tg----~--~--~--------~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~ 215 (236)
T PF01791_consen 152 ARIAAELGADFVKTSTG----K--P--V--------GATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDAL 215 (236)
T ss_dssp HHHHHHTT-SEEEEE-S----S--S--S--------CSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHH
T ss_pred HHHHHHhCCCEEEecCC----c--c--c--------cccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHH
Confidence 45678999999877666 1 1 1 3566777777777776653 3545444 57 8888888
Q ss_pred H--HhCCCE--EeeCHHHH
Q psy10967 162 A--LAGCDL--MTIGPKLL 176 (199)
Q Consensus 162 a--LAGaDa--VTIpP~VL 176 (199)
+ .+||+. ++.+.+++
T Consensus 216 ~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 216 EFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp HHHHTTHSEEEEEEHHHHH
T ss_pred HHHHcCChhHHHHHHHHHH
Confidence 6 799965 55555544
No 251
>PRK09389 (R)-citramalate synthase; Provisional
Probab=29.06 E-value=1.3e+02 Score=29.15 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhhcCcccccch-----hhh-HHHHHcCCcccccchhhhhhhc
Q psy10967 45 DLKEKVLQLQRESEEKNKIIEN-----LRNEINAIKQNRHVSYATKATQ-----TED-YLDVYNNNADGQDENAKHLVRY 113 (199)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~aik~l~~~~~~~~aTa-----~Qa-~LA~~agA~YISPFVGRIdDwy 113 (199)
...+|+-=.+...+.|.+.||- =..+.++++.+.+.+.++..++ ... =.|..+|++.|.-|+.- .|+.
T Consensus 22 s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~i~~~~-Sd~h 100 (488)
T PRK09389 22 TPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVHLVVPT-SDLH 100 (488)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEEEEEcc-CHHH
Confidence 4567777777788889888875 3456778888877766555444 111 14567899888777643 3332
Q ss_pred ccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-ccC-CHhhHHH------HhCCCEEeeC
Q psy10967 114 VANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFR-NTGEILA------LAGCDLMTIG 172 (199)
Q Consensus 114 kk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-SFR-Nv~QV~a------LAGaDaVTIp 172 (199)
.+.. +....+..++.+.+..++.+.+|+..++=+. +.| +++-+.+ .+|+|.+.+|
T Consensus 101 ~~~~----l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~ 163 (488)
T PRK09389 101 IEYK----LKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFC 163 (488)
T ss_pred HHHH----hCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 1110 0011234577788888888999986554322 233 4444442 5799998775
No 252
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=28.98 E-value=2.2e+02 Score=23.75 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC------HHHHHHHhcC
Q psy10967 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG------PKLLEELENS 182 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp------P~VLeqL~~~ 182 (199)
..++++++.+.. +.+ -.+++.+|+.+++.. .+|||.+.++ |+.+.++.+.
T Consensus 60 ~~~~i~~i~~~~---~~p-i~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~ 117 (230)
T TIGR00007 60 NLPVIKKIVRET---GVP-VQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKE 117 (230)
T ss_pred cHHHHHHHHHhc---CCC-EEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHH
Confidence 467777776643 333 444889999999986 6999999888 4455555533
No 253
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=28.93 E-value=3.9e+02 Score=23.21 Aligned_cols=47 Identities=19% Similarity=0.029 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCceEEEEcccC--CHhhHHHHhCCCEEeeCHHHHHHHh
Q psy10967 134 TKIYNYYKKFGYKTVVMGASFR--NTGEILALAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 134 k~I~~~yk~~gykTkILAASFR--Nv~QV~aLAGaDaVTIpP~VLeqL~ 180 (199)
.++.++-+.-+.+--++....- ..-+-+...|...+++|+..+....
T Consensus 186 ~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~~~~a~ 234 (243)
T cd00377 186 EEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLALLRAAA 234 (243)
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHHHHHHH
Confidence 4444444444444444444333 2344445789999999998876654
No 254
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=28.91 E-value=59 Score=29.88 Aligned_cols=57 Identities=18% Similarity=0.062 Sum_probs=41.2
Q ss_pred HHHHcCCccccc-chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-----ccCCHhhHHHHhCC
Q psy10967 93 LDVYNNNADGQD-ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-----SFRNTGEILALAGC 166 (199)
Q Consensus 93 LA~~agA~YISP-FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-----SFRNv~QV~aLAGa 166 (199)
.|++.|+|||+- ||..-+| |.++.+++..+|.+.+|+|= +++|.++|++. +
T Consensus 184 fa~~~~vD~IalSFVrsa~d---------------------V~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~--s 240 (348)
T PF00224_consen 184 FAVENGVDFIALSFVRSAED---------------------VKELRKILGEKGKDIKIIAKIETKEAVENLDEILEA--S 240 (348)
T ss_dssp HHHHTT-SEEEETTE-SHHH---------------------HHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHH--S
T ss_pred HHHHcCCCEEEecCCCchHH---------------------HHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhh--c
Confidence 467889999987 7765555 46778888888888899985 88888888865 3
Q ss_pred CEEeeC
Q psy10967 167 DLMTIG 172 (199)
Q Consensus 167 DaVTIp 172 (199)
|.+-|.
T Consensus 241 Dgimia 246 (348)
T PF00224_consen 241 DGIMIA 246 (348)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 555544
No 255
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=28.58 E-value=5.6e+02 Score=25.06 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=51.3
Q ss_pred hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCH----hhHHHHh
Q psy10967 89 TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNT----GEILALA 164 (199)
Q Consensus 89 ~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv----~QV~aLA 164 (199)
.=+|+|-..|-..++ |++ +.. + ..|+.+-++++.+.++.++.++-+.-..+.+. ..+.+..
T Consensus 380 af~YLa~~YGL~~~~-~~~-~~~------~-------~ePS~~~L~~Li~~IK~~~V~~IF~Epq~~~~~~~l~~IA~e~ 444 (479)
T TIGR03772 380 AYSYLGQAYGLNIAG-FVT-PNP------A-------VEPSLADRRRLTRTIENLKVPAVFLEPNLAARSTTLNEIADEL 444 (479)
T ss_pred cHHHHHHHCCCeEEe-eec-cCC------C-------CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCchHHHHHHHHHc
Confidence 347888888888765 443 221 2 47999999999999999999999999999643 3444578
Q ss_pred CCCEEee
Q psy10967 165 GCDLMTI 171 (199)
Q Consensus 165 GaDaVTI 171 (199)
|+.++.+
T Consensus 445 Gv~V~~l 451 (479)
T TIGR03772 445 GVRVCAI 451 (479)
T ss_pred CCcEEee
Confidence 9887655
No 256
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=28.46 E-value=3e+02 Score=25.45 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhh-cCcccccch--------------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCCh
Q psy10967 65 ENLRNEINAIKQNRH-VSYATKATQ--------------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPG 129 (199)
Q Consensus 65 ~~~~~~l~aik~l~~-~~~~~~aTa--------------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddG 129 (199)
+..-..|+|++.-+. ..+=+.|-. -|+|. +||||-|-| +|
T Consensus 133 ~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~--eAGAD~if~-----------------------~a 187 (289)
T COG2513 133 DEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYV--EAGADAIFP-----------------------EA 187 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHH--HcCCcEEcc-----------------------cc
Confidence 444556778887775 333333322 67777 899998876 23
Q ss_pred HHHHHHHHHHHHhcC-CceEEEEcccC---CHhhHHHHhCCCEEeeCHHHHHHHhc
Q psy10967 130 VVSVTKIYNYYKKFG-YKTVVMGASFR---NTGEILALAGCDLMTIGPKLLEELEN 181 (199)
Q Consensus 130 V~vVk~I~~~yk~~g-ykTkILAASFR---Nv~QV~aLAGaDaVTIpP~VLeqL~~ 181 (199)
+....++.++-+.-. .-.--|-...+ -..+.++.+|...|..|+-.+..++.
T Consensus 188 l~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~~~raa~~ 243 (289)
T COG2513 188 LTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKRVSYGLTAFRAALK 243 (289)
T ss_pred CCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCceEEEECcHHHHHHHH
Confidence 333344443333332 11222223333 23356678999999999998877754
No 257
>PF15573 Imm27: Immunity protein 27
Probab=28.25 E-value=60 Score=29.46 Aligned_cols=45 Identities=38% Similarity=0.494 Sum_probs=36.4
Q ss_pred eeeecCCCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q psy10967 28 GIFLGNDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQ 76 (199)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik~ 76 (199)
||+.|.-|.-+ +.+||+++|+.+.+.|.=+.+||.++.|-=..|.
T Consensus 5 ~iw~G~~s~~s----~~~lK~~ll~~~tE~E~~lli~El~K~GDFsvK~ 49 (259)
T PF15573_consen 5 GIWFGEVSSLS----ISELKENLLSVQTEKECLLLIIELLKKGDFSVKN 49 (259)
T ss_pred ccccCCCCccc----HHHHHHHHhhcchhHHHHHHHHHHHHhCCchhhH
Confidence 67777766543 6799999999999999999999999987544443
No 258
>PRK07695 transcriptional regulator TenI; Provisional
Probab=28.25 E-value=59 Score=26.80 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.1
Q ss_pred eEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 147 TVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 147 TkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
-.++++|.++.+++.+ .+|+|+++++|
T Consensus 95 ~~~ig~s~~s~e~a~~a~~~Gadyi~~g~ 123 (201)
T PRK07695 95 YLHVGYSVHSLEEAIQAEKNGADYVVYGH 123 (201)
T ss_pred CCEEEEeCCCHHHHHHHHHcCCCEEEECC
Confidence 3467889999999885 58999998765
No 259
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=28.04 E-value=72 Score=30.35 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=24.1
Q ss_pred ceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 146 KTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 146 kTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+-++++.|.++..++.. ..|+|++.++|
T Consensus 389 ~~~~iG~S~h~~~e~~~a~~~gadyi~~gp 418 (502)
T PLN02898 389 PGKIIGVSCKTPEQAEQAWKDGADYIGCGG 418 (502)
T ss_pred CCCEEEEeCCCHHHHHHHhhcCCCEEEECC
Confidence 55799999999999985 58999998765
No 260
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.00 E-value=1.8e+02 Score=24.48 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 130 VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
...++++. +.++.+ -++++.+|+.+++.. .+|||.+.++-..+
T Consensus 65 ~~~i~~i~---~~~~~~-l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 65 AEAIEKII---EAVGVP-VQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHH---HHcCCc-EEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 45555554 445444 445999999999875 69999999987554
No 261
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=27.82 E-value=2.4e+02 Score=23.60 Aligned_cols=78 Identities=10% Similarity=0.011 Sum_probs=48.4
Q ss_pred hhhHHHHHcCCccc--ccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEccc-------CCHhh
Q psy10967 89 TEDYLDVYNNNADG--QDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASF-------RNTGE 159 (199)
Q Consensus 89 ~Qa~LA~~agA~YI--SPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASF-------RNv~Q 159 (199)
.+.--|+++||+.| ..+++..+ + ..=.+.++++.+.-+.+|.+.-|-...- .+.++
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~-~--------------~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~ 144 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEE-E--------------REMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDL 144 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCch-H--------------HHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHH
Confidence 56777889999977 66655432 2 2235567777777777777765532210 22333
Q ss_pred HH------HHhCCCEEeeCH----HHHHHHhc
Q psy10967 160 IL------ALAGCDLMTIGP----KLLEELEN 181 (199)
Q Consensus 160 V~------aLAGaDaVTIpP----~VLeqL~~ 181 (199)
+. ..+|+|++-+++ +.++++.+
T Consensus 145 i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~ 176 (235)
T cd00958 145 IAYAARIGAELGADIVKTKYTGDAESFKEVVE 176 (235)
T ss_pred HHHHHHHHHHHCCCEEEecCCCCHHHHHHHHh
Confidence 33 258999988875 67787763
No 262
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=27.82 E-value=2.1e+02 Score=24.91 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHH
Q psy10967 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLE 177 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLe 177 (199)
..+=|+++.++++.++++++|-...==|.+.+-. .+|+|.+.++-.++.
T Consensus 154 ~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~ 204 (223)
T PRK08745 154 ALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFN 204 (223)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhC
Confidence 4556788888888888888888777556777764 699999999987764
No 263
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=27.48 E-value=1.9e+02 Score=24.93 Aligned_cols=64 Identities=9% Similarity=0.196 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEee---CHHHHHHHhcCCCcc-cccCCccc
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI---GPKLLEELENSTTPV-DQMLSEKS 194 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTI---pP~VLeqL~~~p~~v-e~~L~~~~ 194 (199)
....++|+++.+. +. +..|=|+++.+++|+.+ .+|++++.- .+++++...++..+. +.-++|++
T Consensus 44 ~~a~~~i~~l~~~---~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~TptE 113 (204)
T TIGR01182 44 PVALDAIRLLRKE---VP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPIIPGVATPSE 113 (204)
T ss_pred ccHHHHHHHHHHH---CC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEECCCCCHHH
Confidence 3467777777653 33 67888999999999996 799998632 355666666665544 34455544
No 264
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=27.44 E-value=4e+02 Score=22.94 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhc-CCceEEEEcccCCHhhH---H---HHhCCCEEeeCH
Q psy10967 130 VVSVTKIYNYYKKF-GYKTVVMGASFRNTGEI---L---ALAGCDLMTIGP 173 (199)
Q Consensus 130 V~vVk~I~~~yk~~-gykTkILAASFRNv~QV---~---aLAGaDaVTIpP 173 (199)
.+.+.++.+.+++. +.+.-+=-...-+.+++ . ..+|+|+++++-
T Consensus 147 ~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 147 PEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 35556666666554 33322222222232233 2 358999999863
No 265
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=27.15 E-value=3.2e+02 Score=25.36 Aligned_cols=92 Identities=8% Similarity=-0.032 Sum_probs=55.2
Q ss_pred HHHHHHHHHh-hhhcC----ccccc-chhhhHHHHH------cCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHH
Q psy10967 67 LRNEINAIKQ-NRHVS----YATKA-TQTEDYLDVY------NNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVT 134 (199)
Q Consensus 67 ~~~~l~aik~-l~~~~----~~~~a-Ta~Qa~LA~~------agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk 134 (199)
+.+-++++|+ ++..+ |.|-+ |..|+.-|+. +|||.|.- |++ . -.++......+.++
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImL-----Dnm-----~--~~~~~~~~~~e~l~ 253 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVML-----DNM-----V--VPLENGDVDVSMLK 253 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEe-----CCC-----c--ccccccCCCHHHHH
Confidence 3344445555 44333 23322 2399999999 99998865 554 1 00111123567777
Q ss_pred HHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 135 KIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 135 ~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+....++. +..+-|+.==|.+-|.+ ..|+|++.++.
T Consensus 254 ~av~~~~~---~~~lEaSGGIt~~ni~~yA~tGVD~Is~Ga 291 (308)
T PLN02716 254 EAVELING---RFETEASGNVTLDTVHKIGQTGVTYISSGA 291 (308)
T ss_pred HHHHhhCC---CceEEEECCCCHHHHHHHHHcCCCEEEeCc
Confidence 77776653 34455555567777775 78999988874
No 266
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=27.09 E-value=60 Score=29.47 Aligned_cols=41 Identities=5% Similarity=-0.176 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhhcCcccccch-------------hhhHHHHHcCCcccccchh
Q psy10967 67 LRNEINAIKQNRHVSYATKATQ-------------TEDYLDVYNNNADGQDENA 107 (199)
Q Consensus 67 ~~~~l~aik~l~~~~~~~~aTa-------------~Qa~LA~~agA~YISPFVG 107 (199)
..+-++|++.|++.||.|.+.. ..--.|+.||+..+....-
T Consensus 168 p~~Ri~al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l 221 (297)
T COG1533 168 PEERLEALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTL 221 (297)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeee
Confidence 4566789999999999999877 2334568999999877443
No 267
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=26.83 E-value=1.5e+02 Score=27.68 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=51.2
Q ss_pred ccceeeeecCCCCcccccchHHHHHHH--------HHHHHHhHHHHHHHHH---HHHHHHHHHhhhhcCcccccch
Q psy10967 24 PKSVGIFLGNDSEYSDERNLQDLKEKV--------LQLQRESEEKNKIIEN---LRNEINAIKQNRHVSYATKATQ 88 (199)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~l~aik~l~~~~~~~~aTa 88 (199)
|.-||+-+|.-..--.+.-|.=|.|-+ |-||.+|++=.|.|.+ +..=..|++.+++.||+|.+-.
T Consensus 113 ~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~Hi 188 (312)
T COG1242 113 AGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHL 188 (312)
T ss_pred CCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEEE
Confidence 667999999988776666655444433 4589999999999975 5667789999999999998655
No 268
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=26.59 E-value=1.3e+02 Score=27.16 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEE-cccCCHhhHHH------HhCCCEEeeC
Q psy10967 130 VVSVTKIYNYYKKFGYKTVVMG-ASFRNTGEILA------LAGCDLMTIG 172 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykTkILA-ASFRNv~QV~a------LAGaDaVTIp 172 (199)
.+-+.+..+.++++|+++.|.. -+=.|.+|+.+ ..|++.+.+.
T Consensus 140 f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 140 FAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4445555567788888765432 22245666542 4799987664
No 269
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=26.54 E-value=3.3e+02 Score=21.69 Aligned_cols=89 Identities=9% Similarity=0.066 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhhcCcccccch-------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHH
Q psy10967 65 ENLRNEINAIKQNRHVSYATKATQ-------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIY 137 (199)
Q Consensus 65 ~~~~~~l~aik~l~~~~~~~~aTa-------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~ 137 (199)
.....-...|+.|++.|+.+...- .+-+ .....+||--=...+.++ ........++.+.
T Consensus 131 ~~~~~~~~~l~~l~~~G~~i~ld~~g~~~~~~~~l--~~l~~~~ikld~~~~~~~------------~~~~~~~~l~~l~ 196 (236)
T PF00563_consen 131 PNDAELLENLRRLRSLGFRIALDDFGSGSSSLEYL--ASLPPDYIKLDGSLVRDL------------SDEEAQSLLQSLI 196 (236)
T ss_dssp HHHHHHHHHHHHHHHCT-EEEEEEETSTCGCHHHH--HHHCGSEEEEEHHGHTTT------------TSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcCceeEeeeccCCcchhhhh--hhcccccceeeccccccc------------chhhHHHHHHHHH
Confidence 444445568888999999987553 2222 233344443322222211 0123567788888
Q ss_pred HHHHhcCCceEEEEcccCCHhhHHH--HhCCCEE
Q psy10967 138 NYYKKFGYKTVVMGASFRNTGEILA--LAGCDLM 169 (199)
Q Consensus 138 ~~yk~~gykTkILAASFRNv~QV~a--LAGaDaV 169 (199)
++.++. ..+|+|..+.+..|... ..|||++
T Consensus 197 ~~~~~~--~~~via~gVe~~~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 197 NLAKSL--GIKVIAEGVESEEQLELLKELGVDYI 228 (236)
T ss_dssp HHHHHT--T-EEEEECE-SHHHHHHHHHTTESEE
T ss_pred HHhhcc--ccccceeecCCHHHHHHHHHcCCCEE
Confidence 888887 57999999999999985 6999875
No 270
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.38 E-value=1.1e+02 Score=27.40 Aligned_cols=20 Identities=0% Similarity=-0.293 Sum_probs=14.6
Q ss_pred hhhHHHHHcCCccc---ccchhh
Q psy10967 89 TEDYLDVYNNNADG---QDENAK 108 (199)
Q Consensus 89 ~Qa~LA~~agA~YI---SPFVGR 108 (199)
.++=.|..+|||.+ .||+.+
T Consensus 94 ~~a~~A~~~Gad~vlv~~P~y~~ 116 (309)
T cd00952 94 ARTRALLDLGADGTMLGRPMWLP 116 (309)
T ss_pred HHHHHHHHhCCCEEEECCCcCCC
Confidence 77788889999954 576433
No 271
>PRK13753 dihydropteroate synthase; Provisional
Probab=26.27 E-value=1.3e+02 Score=27.35 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=43.7
Q ss_pred ceeee-ecCCCCcccccchHHHHHHHHHHHHHhHHHHHHHH-----------------HHHHHHHHHHhhhhcCcccccc
Q psy10967 26 SVGIF-LGNDSEYSDERNLQDLKEKVLQLQRESEEKNKIIE-----------------NLRNEINAIKQNRHVSYATKAT 87 (199)
Q Consensus 26 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~l~aik~l~~~~~~~~aT 87 (199)
-.||. +-.||-|..-+. .+...-+-+..++-++|-.||+ -++.=+.+||.+++.++.+..-
T Consensus 4 iMGIlNvTPDSFsDGg~~-~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISID 82 (279)
T PRK13753 4 VFGILNLTEDSFFDESRR-LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSID 82 (279)
T ss_pred EEEEEeCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 35666 556776655553 3455555566666666655542 2332334666666665444322
Q ss_pred h---hhhHHHHHcCCccccc
Q psy10967 88 Q---TEDYLDVYNNNADGQD 104 (199)
Q Consensus 88 a---~Qa~LA~~agA~YISP 104 (199)
- .-+--|+++||+.|--
T Consensus 83 T~~~~va~~al~aGadiIND 102 (279)
T PRK13753 83 SFQPETQRYALKRGVGYLND 102 (279)
T ss_pred CCCHHHHHHHHHcCCCEEEe
Confidence 2 3345567899998654
No 272
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.09 E-value=1.4e+02 Score=26.29 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH-HHhhhhc
Q psy10967 50 VLQLQRESEEKNKIIENLRNEINA-IKQNRHV 80 (199)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~l~a-ik~l~~~ 80 (199)
+++-.++|++=++-|..=.|.|.+ ||+.+.+
T Consensus 44 L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 44 LLQERMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455554444444444432 3444443
No 273
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=26.08 E-value=3e+02 Score=24.36 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHhcCCc-eEEEEcccC--CHhhHH
Q psy10967 129 GVVSVTKIYNYYKKFGYK-TVVMGASFR--NTGEIL 161 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gyk-TkILAASFR--Nv~QV~ 161 (199)
..+-+.+-.+.+++.|++ .+|-.--.+ |.+++.
T Consensus 137 ~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~ 172 (334)
T TIGR02666 137 RLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIV 172 (334)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHH
Confidence 345555555566777876 666443333 566665
No 274
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=25.96 E-value=3e+02 Score=20.92 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEEcccCCHhhHHH--HhCCCEEeeC
Q psy10967 148 VVMGASFRNTGEILA--LAGCDLMTIG 172 (199)
Q Consensus 148 kILAASFRNv~QV~a--LAGaDaVTIp 172 (199)
.+.++.+++++++.+ ..|||.+-++
T Consensus 173 i~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 173 VIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred EEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 444556988888875 5799998764
No 275
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=25.80 E-value=2.4e+02 Score=24.26 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCcccccchhhhhhhcccccCCCCCC-CC--CCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHHHh-CCCEE
Q psy10967 98 NNADGQDENAKHLVRYVANTGTKTYA-PT--EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALA-GCDLM 169 (199)
Q Consensus 98 gA~YISPFVGRIdDwykk~~G~~~~~-~~--~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~aLA-GaDaV 169 (199)
|-..+.-..||.|.+- ....++ |. ...+-..+.++.+.|...|+ +++++.+|. |+|.+
T Consensus 100 ggp~~~~~~GR~D~~~----~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl----------~~~e~VAL~~GaHti 161 (255)
T cd00314 100 GGPLIPFRFGRLDATE----PDLGVPDPEGLLPNETSSATELRDKFKRMGL----------SPSELVALSAGAHTL 161 (255)
T ss_pred CCCeeeeCCCCCCCch----hhccCCCCCCCCCCccchHHHHHHHHHHcCC----------CHHHHHhhccCCeec
Confidence 6777777999999861 000011 10 01133457777778887665 678888888 88866
No 276
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=25.71 E-value=1.8e+02 Score=25.38 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=57.6
Q ss_pred CcccccchhhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhH
Q psy10967 81 SYATKATQTEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEI 160 (199)
Q Consensus 81 ~~~~~aTa~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV 160 (199)
++-+|.|..++--=+++||+-|+- |--.+ .-| +.+.++.+.++..+ .-+| |=+-+.++.
T Consensus 47 ~V~ITPT~~ev~~l~~aGadIIAl-----DaT~R-----------~Rp--~~l~~li~~i~~~~--~l~M-ADist~ee~ 105 (192)
T PF04131_consen 47 DVYITPTLKEVDALAEAGADIIAL-----DATDR-----------PRP--ETLEELIREIKEKY--QLVM-ADISTLEEA 105 (192)
T ss_dssp S--BS-SHHHHHHHHHCT-SEEEE-----E-SSS-----------S-S--S-HHHHHHHHHHCT--SEEE-EE-SSHHHH
T ss_pred CeEECCCHHHHHHHHHcCCCEEEE-----ecCCC-----------CCC--cCHHHHHHHHHHhC--cEEe-eecCCHHHH
Confidence 667787776666666899998885 33210 124 77888888888876 5555 788999999
Q ss_pred HH--HhCCCEEe------------eCHHH--HHHHhcCCCcc--cc-cCCccccc
Q psy10967 161 LA--LAGCDLMT------------IGPKL--LEELENSTTPV--DQ-MLSEKSGK 196 (199)
Q Consensus 161 ~a--LAGaDaVT------------IpP~V--LeqL~~~p~~v--e~-~L~~~~a~ 196 (199)
.. .+|+|++- -+|++ +++|.+...|| |. --+|+.|.
T Consensus 106 ~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~ 160 (192)
T PF04131_consen 106 INAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIHTPEQAA 160 (192)
T ss_dssp HHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--SHHHHH
T ss_pred HHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCCCHHHHH
Confidence 95 79999974 34654 88887766665 33 33555443
No 277
>PRK12370 invasion protein regulator; Provisional
Probab=25.66 E-value=71 Score=30.58 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=55.7
Q ss_pred HHHHHHHHHH------HHHhhhhcCcccccchh---hhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHH
Q psy10967 63 IIENLRNEIN------AIKQNRHVSYATKATQT---EDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSV 133 (199)
Q Consensus 63 ~~~~~~~~l~------aik~l~~~~~~~~aTa~---Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vV 133 (199)
.|.+||+.|+ .|+..+..||..+.+.. ...-+..--.--|=||.+. .|. . .+ .+.
T Consensus 78 ~I~~LRkkl~~~~~~~~I~tv~g~GY~~~~~~~~~~~~~~~~~~~siaVLPF~n~-~~~-----~--------~d--g~~ 141 (553)
T PRK12370 78 CIYALRRILSEDKEHRYIETLYGQGYRFNRPVVVVSPPAPQPTTHTLAILPFQMQ-DQV-----Q--------SE--SLH 141 (553)
T ss_pred HHHHHHHhhccCCCCCeEEEeCCeeEEEeeeeccccCCCCCCCCCCeEEeCCCCC-CCc-----c--------hh--hhH
Confidence 4778888875 37777888998875541 1100111234567789982 332 1 23 366
Q ss_pred HHHHHHHHhcC-CceEEEEcc-------cCCHhhHHHHhCCCEEe
Q psy10967 134 TKIYNYYKKFG-YKTVVMGAS-------FRNTGEILALAGCDLMT 170 (199)
Q Consensus 134 k~I~~~yk~~g-ykTkILAAS-------FRNv~QV~aLAGaDaVT 170 (199)
.+|..-+.+.. +...|+..| ..++.+|-...|+++|.
T Consensus 142 edli~~Ls~~~~~~l~v~~~s~~~~~~~~~~~~~i~~~Lgv~yvl 186 (553)
T PRK12370 142 YSIVKGLSQYAPFGLSVLPVTITKNCRSVKDILELMDQLRPDYYI 186 (553)
T ss_pred HHHHHHHhhCCCcceEEeeHhhhhhcccccCHHHHHHHhCCcEEE
Confidence 77777777753 346666544 33677777788888754
No 278
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=25.58 E-value=3.2e+02 Score=26.46 Aligned_cols=88 Identities=9% Similarity=0.058 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhhhcCcccccch-------hhhHHHHHcCCccccc---chhhhhhhcccccCCCCCCCCCCChHHHH
Q psy10967 64 IENLRNEINAIKQNRHVSYATKATQ-------TEDYLDVYNNNADGQD---ENAKHLVRYVANTGTKTYAPTEDPGVVSV 133 (199)
Q Consensus 64 ~~~~~~~l~aik~l~~~~~~~~aTa-------~Qa~LA~~agA~YISP---FVGRIdDwykk~~G~~~~~~~~ddGV~vV 133 (199)
+.++....+.++.|++.|+++.-.- +..+. .-+.+||-- |+..+.+ ....-.++
T Consensus 674 ~~~~~~~~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~--~l~~d~iKid~~~~~~~~~--------------~~~~~~~~ 737 (799)
T PRK11359 674 MEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLV--SLPVTEIKIDKSFVDRCLT--------------EKRILALL 737 (799)
T ss_pred hcCHHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHh--hCCCCEEEECHHHHhhccc--------------ChhHHHHH
Confidence 3445556678999999999986432 11111 223444432 2222211 12345678
Q ss_pred HHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEE
Q psy10967 134 TKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLM 169 (199)
Q Consensus 134 k~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaV 169 (199)
+.+.++.+..| .+|+|-.+-+..|... .+|||++
T Consensus 738 ~~~~~~~~~~~--i~via~gVe~~~~~~~l~~~g~~~~ 773 (799)
T PRK11359 738 EAITSIGQSLN--LTVVAEGVETKEQFEMLRKIHCRVI 773 (799)
T ss_pred HHHHHHHHHCC--CeEEEEcCCCHHHHHHHHhcCCCEE
Confidence 88888887765 8899999999999996 6999864
No 279
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.45 E-value=4.6e+02 Score=22.94 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHH
Q psy10967 129 GVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKL 175 (199)
Q Consensus 129 GV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~V 175 (199)
.+..++++++.. + -..|-.+.+++.+++.+ .+|||.|-|.-.+
T Consensus 222 ~l~~v~~i~~~~---~-ipvi~~GGI~~~~da~~~l~aGAd~V~igr~l 266 (301)
T PRK07259 222 ALRMVYQVYQAV---D-IPIIGMGGISSAEDAIEFIMAGASAVQVGTAN 266 (301)
T ss_pred cHHHHHHHHHhC---C-CCEEEECCCCCHHHHHHHHHcCCCceeEcHHH
Confidence 455666655533 3 34666789999999997 6999998765443
No 280
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=25.32 E-value=1.4e+02 Score=29.18 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=73.1
Q ss_pred CCCcccccchHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhhcCc-ccccch-----hhhH---------H
Q psy10967 34 DSEYSDERNLQDLKEKVLQLQRESEEKNKIIEN-----LRNEINAIKQNRHVSY-ATKATQ-----TEDY---------L 93 (199)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~aik~l~~~~~-~~~aTa-----~Qa~---------L 93 (199)
|-+.+....+ ...+|+--.+...+.|.+.||- =..+.++++.+.+.+. +++-++ ..++ .
T Consensus 15 DG~Q~~g~~~-s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~ 93 (524)
T PRK12344 15 DGAQGEGISF-SVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQA 93 (524)
T ss_pred CcCcCCCCCC-CHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHH
Confidence 4444443222 4566666677788888888774 1234555666654332 122122 1111 2
Q ss_pred HHHcCCcccccchhhhhhhccccc-CCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc----ccCC-HhhHHH-----
Q psy10967 94 DVYNNNADGQDENAKHLVRYVANT-GTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA----SFRN-TGEILA----- 162 (199)
Q Consensus 94 A~~agA~YISPFVGRIdDwykk~~-G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA----SFRN-v~QV~a----- 162 (199)
+..+|++.|.-|+.- .|+..+.+ + -....-++.+++..++.+.+|.+..+=+- ++|. ++-+.+
T Consensus 94 ~~~~g~~~i~i~~~~-Sd~h~~~~l~-----~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~ 167 (524)
T PRK12344 94 LLDAGTPVVTIFGKS-WDLHVTEALR-----TTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAA 167 (524)
T ss_pred HHhCCCCEEEEEECC-CHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHH
Confidence 457888888887642 22211110 1 00123577888889999999988765222 2344 333332
Q ss_pred -HhCCCEEeeC
Q psy10967 163 -LAGCDLMTIG 172 (199)
Q Consensus 163 -LAGaDaVTIp 172 (199)
.+|+|.+.+|
T Consensus 168 ~~~Gad~i~l~ 178 (524)
T PRK12344 168 AEAGADWVVLC 178 (524)
T ss_pred HhCCCCeEEEc
Confidence 5899999988
No 281
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.24 E-value=3.4e+02 Score=24.70 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHHHhcCCC
Q psy10967 125 TEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEELENSTT 184 (199)
Q Consensus 125 ~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeqL~~~p~ 184 (199)
.+.+....+.++.+.++++.-...+.+=++++++|+.+ .+ ||.|.|+-++.+.+.++..
T Consensus 185 ~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~i~~~~~ 245 (265)
T COG0159 185 ARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIEEGLD 245 (265)
T ss_pred CCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHHHHHhccc
Confidence 33443445899999999998677788889999999996 46 9999999999999987753
No 282
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.95 E-value=3.3e+02 Score=24.28 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=43.6
Q ss_pred cccccceeeeecCCCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcCcccccchhhhHHHHHcCCc
Q psy10967 21 KYLPKSVGIFLGNDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDVYNNNA 100 (199)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa~Qa~LA~~agA~ 100 (199)
.-+|+-|||..-....|...++++ ...-|++|.+.+..+- -.+.+.|..
T Consensus 18 ~~~P~HVaiImDGNrRwA~~~gl~--------~~~GH~~G~~~l~~i~-----------------------~~c~~~GI~ 66 (249)
T PRK14831 18 QRLPKHVAVIMDGNGRWAKRRGLP--------RIMGHRRGVDALKDLL-----------------------RCCKDWGIG 66 (249)
T ss_pred CCCCCeEEEecCCcHHHHHHCCCc--------hhhhHHHHHHHHHHHH-----------------------HHHHHcCCC
Confidence 458999999997777777766653 3457888887765543 123466777
Q ss_pred ccccchhhhhhh
Q psy10967 101 DGQDENAKHLVR 112 (199)
Q Consensus 101 YISPFVGRIdDw 112 (199)
+|+-|.=-++||
T Consensus 67 ~vT~yaFS~eN~ 78 (249)
T PRK14831 67 ALTAYAFSTENW 78 (249)
T ss_pred EEEEeecchhhh
Confidence 788888778888
No 283
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=24.91 E-value=4.8e+02 Score=23.76 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=16.7
Q ss_pred CHhhHHHHhCCCEEeeCHHHHHHHh
Q psy10967 156 NTGEILALAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 156 Nv~QV~aLAGaDaVTIpP~VLeqL~ 180 (199)
+.++ +...|...++.|+..+..+.
T Consensus 219 s~~~-L~~lGv~~v~~~~~~~~aa~ 242 (292)
T PRK11320 219 TTEE-LASAGVAMVLYPLSAFRAMN 242 (292)
T ss_pred CHHH-HHHcCCcEEEEChHHHHHHH
Confidence 3444 34579999999988865554
No 284
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=24.85 E-value=3.3e+02 Score=24.95 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhhhhcCcccccchhhhH-HH---HHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHH
Q psy10967 63 IIENLRNEINAIKQNRHVSYATKATQTEDY-LD---VYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYN 138 (199)
Q Consensus 63 ~~~~~~~~l~aik~l~~~~~~~~aTa~Qa~-LA---~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~ 138 (199)
.+++|+ |-++|-++|+.|.---.-.. +| .++|+..|=|.-.-|- ..-|+.--..+.-
T Consensus 116 ~~etl~----Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIG---------------Sg~G~~n~~~l~i 176 (262)
T COG2022 116 PIETLK----AAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIG---------------SGLGLQNPYNLEI 176 (262)
T ss_pred hHHHHH----HHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEecccccccc---------------CCcCcCCHHHHHH
Confidence 467777 99999999999874331121 11 2688888888333322 2345555555555
Q ss_pred HHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHH
Q psy10967 139 YYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKL 175 (199)
Q Consensus 139 ~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~V 175 (199)
++.+.. =.-|+=|.+-.+.|... ..|||+|-+.-.+
T Consensus 177 iie~a~-VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 177 IIEEAD-VPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred HHHhCC-CCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 555553 45677899999999995 7999999886555
No 285
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=24.79 E-value=3.3e+02 Score=25.22 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHhcCC-ceEEEEcccC--CHhhHHH
Q psy10967 128 PGVVSVTKIYNYYKKFGY-KTVVMGASFR--NTGEILA 162 (199)
Q Consensus 128 dGV~vVk~I~~~yk~~gy-kTkILAASFR--Nv~QV~a 162 (199)
++.+-+-+..+.....|. +.+|-..-.+ |.+++.+
T Consensus 182 ~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~ 219 (373)
T PLN02951 182 KGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICD 219 (373)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHH
Confidence 344444444445556675 4555444444 6666653
No 286
>PRK06354 pyruvate kinase; Provisional
Probab=24.50 E-value=1.3e+02 Score=30.00 Aligned_cols=20 Identities=0% Similarity=-0.464 Sum_probs=14.3
Q ss_pred HHHHcCCccccc-chhhhhhh
Q psy10967 93 LDVYNNNADGQD-ENAKHLVR 112 (199)
Q Consensus 93 LA~~agA~YISP-FVGRIdDw 112 (199)
.|++.|.|||+- ||..-+|.
T Consensus 186 f~~~~~vD~ia~SFVr~~~dv 206 (590)
T PRK06354 186 FGLEQGVDWIALSFVRNPSDV 206 (590)
T ss_pred HHHHcCCCEEEEcCCCCHHHH
Confidence 577899999976 66554443
No 287
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=24.48 E-value=2.3e+02 Score=24.75 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC------HHHHHHHhcC
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG------PKLLEELENS 182 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp------P~VLeqL~~~ 182 (199)
.+..++|++|.+... -.--+++.+|+.+++.. .+|||.+.++ |++++++.+.
T Consensus 60 ~~n~~~i~~i~~~~~----~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~ 119 (243)
T TIGR01919 60 GNNEMMLEEVVKLLV----VVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRY 119 (243)
T ss_pred cchHHHHHHHHHHCC----CCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHH
Confidence 445678888876431 23467899999999986 5899999887 5577777654
No 288
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=24.37 E-value=3.9e+02 Score=23.62 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHH
Q psy10967 130 VVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKL 175 (199)
Q Consensus 130 V~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~V 175 (199)
++.|.++++.+. +--..|-.+.+++.+++.+ .+|||.|-|.-.+
T Consensus 239 l~~v~~~~~~~~--~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~ 284 (299)
T cd02940 239 LRAVSQIARAPE--PGLPISGIGGIESWEDAAEFLLLGASVVQVCTAV 284 (299)
T ss_pred HHHHHHHHHhcC--CCCcEEEECCCCCHHHHHHHHHcCCChheEceee
Confidence 455555554432 1234555688999999997 7999998775443
No 289
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=24.35 E-value=1.3e+02 Score=26.67 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=31.2
Q ss_pred HHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEee---CHHHHHHHhc
Q psy10967 137 YNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI---GPKLLEELEN 181 (199)
Q Consensus 137 ~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTI---pP~VLeqL~~ 181 (199)
....++.--+.+.++.|.+|.+|+.+ .+|+|++-+ +|+-+++...
T Consensus 168 v~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~ 217 (265)
T TIGR00078 168 VKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNMKPEEIKEAVQ 217 (265)
T ss_pred HHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 33444432346789999999999995 699999965 4555555543
No 290
>KOG3990|consensus
Probab=24.31 E-value=79 Score=29.17 Aligned_cols=24 Identities=54% Similarity=0.649 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q psy10967 46 LKEKVLQLQRESEEKNKIIENLRN 69 (199)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~ 69 (199)
-+|+|-|||+.-|+-+|.|+-||+
T Consensus 272 Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 272 HKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888888888877777773
No 291
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.25 E-value=1e+02 Score=23.98 Aligned_cols=68 Identities=4% Similarity=-0.065 Sum_probs=48.0
Q ss_pred HHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCC----------------
Q psy10967 93 LDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRN---------------- 156 (199)
Q Consensus 93 LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRN---------------- 156 (199)
.|.++|.+.|........+|. +....++++.+.++++|.+.-.+...++.
T Consensus 3 ~~~~~G~~~vE~~~~~~~~~~--------------~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~ 68 (213)
T PF01261_consen 3 AAAEAGFDGVELRFDDGQPWD--------------EKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREE 68 (213)
T ss_dssp HHHHTTHSEEEEEHHHHSHHT--------------HHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHH
T ss_pred HHHHcCCCEEEEecCCCcccc--------------cchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHH
Confidence 367889999988888877772 22677899999999999986665554442
Q ss_pred -HhhHH------HHhCCCEEeeCHH
Q psy10967 157 -TGEIL------ALAGCDLMTIGPK 174 (199)
Q Consensus 157 -v~QV~------aLAGaDaVTIpP~ 174 (199)
.+++. +..||+.+++.+.
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHHHHHHhCCCceeecCc
Confidence 22222 2689999888744
No 292
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=24.23 E-value=2.5e+02 Score=24.32 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHH----H-HHHHHHHHhhhhcCcccccch-----hh-hHHHHHcC----Ccccccchhhhh
Q psy10967 46 LKEKVLQLQRESEEKNKIIEN----L-RNEINAIKQNRHVSYATKATQ-----TE-DYLDVYNN----NADGQDENAKHL 110 (199)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~----~-~~~l~aik~l~~~~~~~~aTa-----~Q-a~LA~~ag----A~YISPFVGRId 110 (199)
..+|+.=+++..+.|+..||- . .+..+.++.+++..-+++.++ .+ .=.|+.+| .+.|.-|+.-=+
T Consensus 19 ~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~ 98 (268)
T cd07940 19 PEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIATSD 98 (268)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEecCCH
Confidence 455666666777788887764 1 234566677766433333222 11 22355677 777766653211
Q ss_pred hhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEE--EcccCCHhhHHH------HhCCCEEeeC
Q psy10967 111 VRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVM--GASFRNTGEILA------LAGCDLMTIG 172 (199)
Q Consensus 111 Dwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkIL--AASFRNv~QV~a------LAGaDaVTIp 172 (199)
-..+++-+ .....-++.+.++.++.+..|++..+= -++--+++.+.+ .+|+|.+.++
T Consensus 99 ~~~~~~~~-----~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 163 (268)
T cd07940 99 IHLKYKLK-----KTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIP 163 (268)
T ss_pred HHHHHHhC-----CCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 11111112 001234677888888889999865532 222234555442 4799998875
No 293
>PTZ00110 helicase; Provisional
Probab=23.88 E-value=3.5e+02 Score=26.21 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=61.5
Q ss_pred HHhhhhcCcc-cccchhhhHHHHHcCCccc--------------ccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHH
Q psy10967 74 IKQNRHVSYA-TKATQTEDYLDVYNNNADG--------------QDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYN 138 (199)
Q Consensus 74 ik~l~~~~~~-~~aTa~Qa~LA~~agA~YI--------------SPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~ 138 (199)
++.|++.||. -|.-|.|++=++..|-+.| -|-+-++.+--....+.....-.--|-.+++.++.+
T Consensus 142 ~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~ 221 (545)
T PTZ00110 142 LKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIRE 221 (545)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHH
Confidence 4556666775 4444577777777775543 333444432100000100001122377889999998
Q ss_pred HHHhcCCc----eEEEEcccCCHhhHHH-HhCCCEEeeCHHHHHHHhcC
Q psy10967 139 YYKKFGYK----TVVMGASFRNTGEILA-LAGCDLMTIGPKLLEELENS 182 (199)
Q Consensus 139 ~yk~~gyk----TkILAASFRNv~QV~a-LAGaDaVTIpP~VLeqL~~~ 182 (199)
.+++.+.. +.++-+......|+.. ..|+|++...|..|.+++..
T Consensus 222 ~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~ 270 (545)
T PTZ00110 222 QCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES 270 (545)
T ss_pred HHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc
Confidence 88887643 3334444444555555 58999988888777766644
No 294
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=23.88 E-value=5.6e+02 Score=24.10 Aligned_cols=94 Identities=10% Similarity=-0.006 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhhcCccc-ccch---hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHh
Q psy10967 67 LRNEINAIKQNRHVSYAT-KATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKK 142 (199)
Q Consensus 67 ~~~~l~aik~l~~~~~~~-~aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~ 142 (199)
+.+-++|-|.|-++|+.| -.+. ..+=-.+..|+.-|=|.-.=|-- | .. ...-+.++.+.+.
T Consensus 183 ~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGs------g-~g-----v~~p~~i~~~~e~--- 247 (326)
T PRK11840 183 MVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGS------G-LG-----IQNPYTIRLIVEG--- 247 (326)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccC------C-CC-----CCCHHHHHHHHHc---
Confidence 445566999999999999 3333 34444456688766673222210 1 01 1122444444444
Q ss_pred cCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 143 FGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 143 ~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
-. =.-|..|.+.++.|+.. ..|||.|-+.-.+.
T Consensus 248 ~~-vpVivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 248 AT-VPVLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred CC-CcEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 22 34677999999999996 79999988766553
No 295
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.82 E-value=2.3e+02 Score=25.51 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEee---CHHHHHHHhc
Q psy10967 133 VTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI---GPKLLEELEN 181 (199)
Q Consensus 133 Vk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTI---pP~VLeqL~~ 181 (199)
+++-....++.--+.++++-|.+|.+|+.+ .+|+|++-+ +|+-++++..
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~~~~e~l~~~~~ 227 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDNRTPDEIREFVK 227 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 444444555543356789999999999985 699999865 4777777764
No 296
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=23.82 E-value=3.3e+02 Score=24.67 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=57.7
Q ss_pred HHHhhhhcCcccc-cch---hhhHHHHHcCCcccccchhhhhhhcccccCCC--CCCCCCCChHHHHHHHHHHHHhcCCc
Q psy10967 73 AIKQNRHVSYATK-ATQ---TEDYLDVYNNNADGQDENAKHLVRYVANTGTK--TYAPTEDPGVVSVTKIYNYYKKFGYK 146 (199)
Q Consensus 73 aik~l~~~~~~~~-aTa---~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~--~~~~~~ddGV~vVk~I~~~yk~~gyk 146 (199)
-++.+++.|-++. -|+ .-|-++-.+|.+-|- || |+. |.- ++.....=.++-+-...+.+.+---+
T Consensus 6 ~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~il--vG---dSl----gm~~lG~~~t~~vtldem~~h~~aV~rg~~~ 76 (263)
T TIGR00222 6 SLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVIL--VG---DSL----GMVVLGHDSTLPVTVADMIYHTAAVKRGAPN 76 (263)
T ss_pred HHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEE--EC---ccH----hHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC
Confidence 4556777766553 445 667788899999887 66 442 211 22222111222222223333332223
Q ss_pred eEEE-----------EcccCCHhhHHHHhCCCEEeeCH-----HHHHHHhcCCCcccc
Q psy10967 147 TVVM-----------GASFRNTGEILALAGCDLMTIGP-----KLLEELENSTTPVDQ 188 (199)
Q Consensus 147 TkIL-----------AASFRNv~QV~aLAGaDaVTIpP-----~VLeqL~~~p~~ve~ 188 (199)
+-|+ --.++|..+++..+|||.|-|-- +.++.+.+...||..
T Consensus 77 ~~vv~DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~~~~~~i~~l~~~gIpV~g 134 (263)
T TIGR00222 77 CLIVTDLPFMSYATPEQALKNAARVMQETGANAVKLEGGEWLVETVQMLTERGVPVVG 134 (263)
T ss_pred ceEEeCCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcHhHHHHHHHHHHCCCCEEE
Confidence 3333 24445555555569999987742 446667677777763
No 297
>PTZ00066 pyruvate kinase; Provisional
Probab=23.77 E-value=99 Score=30.56 Aligned_cols=53 Identities=13% Similarity=-0.067 Sum_probs=38.2
Q ss_pred hhhH--HHHHcCCccccc-chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE-----cccCCHhhH
Q psy10967 89 TEDY--LDVYNNNADGQD-ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG-----ASFRNTGEI 160 (199)
Q Consensus 89 ~Qa~--LA~~agA~YISP-FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA-----ASFRNv~QV 160 (199)
.+.+ .|++.|.|||+- ||..-+|. +++.++++.+|.+.+|+| .++.|.++|
T Consensus 212 ~~dI~~f~~~~~vD~IalSFVr~a~DI---------------------~~~r~~l~~~g~~~~IiAKIE~~~av~NldeI 270 (513)
T PTZ00066 212 KNDILNFAIPMGCDFIALSFVQSADDV---------------------RLCRQLLGERGRHIKIIPKIENIEGLINFDEI 270 (513)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHH---------------------HHHHHHHHhCCCCceEEEEECCHHHHHHHHHH
Confidence 5554 688999999986 66655543 566667777777788886 577778777
Q ss_pred HH
Q psy10967 161 LA 162 (199)
Q Consensus 161 ~a 162 (199)
++
T Consensus 271 l~ 272 (513)
T PTZ00066 271 LA 272 (513)
T ss_pred HH
Confidence 74
No 298
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=23.68 E-value=1.8e+02 Score=24.32 Aligned_cols=33 Identities=42% Similarity=0.606 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy10967 43 LQDLKEKVLQLQRESEEKNKIIENLRNEINAIK 75 (199)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik 75 (199)
+..|++++.++..+-+++.+.++.|+.++-|..
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888999999988887765
No 299
>PRK00915 2-isopropylmalate synthase; Validated
Probab=23.61 E-value=2.2e+02 Score=27.67 Aligned_cols=132 Identities=13% Similarity=0.052 Sum_probs=75.0
Q ss_pred CCCcccccchHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhhcCcccccch-----hhhHH-HH----HcC
Q psy10967 34 DSEYSDERNLQDLKEKVLQLQRESEEKNKIIEN-----LRNEINAIKQNRHVSYATKATQ-----TEDYL-DV----YNN 98 (199)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~aik~l~~~~~~~~aTa-----~Qa~L-A~----~ag 98 (199)
|.+.+...++ ...+|+.=.+...+.|++.||- =....++++.+.+.+-+++.++ ...+- |+ .+|
T Consensus 14 DG~Q~~g~~~-s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~ 92 (513)
T PRK00915 14 DGEQSPGASL-TVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAE 92 (513)
T ss_pred cCCCCCCCCC-CHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCC
Confidence 4444443333 4567777777888889888874 1234556666655443333222 12221 22 467
Q ss_pred Ccccccchhhhhhhc-ccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEE--cccCCHhhHHH------HhCCCEE
Q psy10967 99 NADGQDENAKHLVRY-VANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMG--ASFRNTGEILA------LAGCDLM 169 (199)
Q Consensus 99 A~YISPFVGRIdDwy-kk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILA--ASFRNv~QV~a------LAGaDaV 169 (199)
++.|..|+.= .|+. +.+-+ ...+.-++.+.+..++.+.+|++...=+ ++--+++-+.+ .+|+|.+
T Consensus 93 ~~~v~i~~~~-Sd~h~~~~l~-----~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i 166 (513)
T PRK00915 93 APRIHTFIAT-SPIHMEYKLK-----MSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTI 166 (513)
T ss_pred CCEEEEEECC-cHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 7777776643 2221 11101 1123457778889999999998876555 44445554553 4899998
Q ss_pred eeC
Q psy10967 170 TIG 172 (199)
Q Consensus 170 TIp 172 (199)
.++
T Consensus 167 ~l~ 169 (513)
T PRK00915 167 NIP 169 (513)
T ss_pred EEc
Confidence 765
No 300
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.55 E-value=1.6e+02 Score=25.13 Aligned_cols=37 Identities=41% Similarity=0.677 Sum_probs=27.3
Q ss_pred ccchHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHh
Q psy10967 40 ERNLQDLKEKVLQLQRE-------SEEKNKIIENLRNEINAIKQ 76 (199)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~aik~ 76 (199)
|.-+.+|+.|+++|||. -|+..+=|..+.....+|++
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKE 173 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999985 56666777778777777765
No 301
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=23.26 E-value=1.7e+02 Score=20.17 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCC-EEee
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCD-LMTI 171 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaD-aVTI 171 (199)
..|+..+.++.+-++.+|.+..+.+++- ++.+++..+|-+ .++|
T Consensus 53 s~g~~~L~~l~~~~~~~g~~v~i~~~~~-~~~~~l~~~gl~~~~~i 97 (99)
T cd07043 53 SSGLGVLLGAYKRARAAGGRLVLVNVSP-AVRRVLELTGLDRLFPI 97 (99)
T ss_pred chhHHHHHHHHHHHHHcCCeEEEEcCCH-HHHHHHHHhCcceeeec
Confidence 4699999999999999998888888773 777777888865 3554
No 302
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=23.16 E-value=4.1e+02 Score=22.49 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcCcccccch-hhhHHHHHcCCcccccchhhhhhhcccccCC
Q psy10967 41 RNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQ-TEDYLDVYNNNADGQDENAKHLVRYVANTGT 119 (199)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa-~Qa~LA~~agA~YISPFVGRIdDwykk~~G~ 119 (199)
+.++.||++|...-..... ...+. |+-|-.+...|+.--+-- ....| +..|+.....
T Consensus 26 ~~~~~Lk~~v~~~l~~~~~--d~~~~----L~lID~lqRLGi~yhFe~EI~~~L----------------~~i~~~~~~~ 83 (183)
T PF01397_consen 26 ERAEELKEEVRNMLPASYP--DPLEK----LELIDTLQRLGISYHFEDEIKEIL----------------DSIYRSWDED 83 (183)
T ss_dssp HHHHHHHHHHHHHHHSSSS--HHHHH----HHHHHHHHHTTCGGGGHHHHHHHH----------------HHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHhhcCC--CHHHH----HHHHHHHHHcCCcHHHHHHHHHHH----------------HHHhhhcccc
Confidence 4467788887776654433 34444 448888888888765544 22222 1111111010
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCce
Q psy10967 120 KTYAPTEDPGVVSVTKIYNYYKKFGYKT 147 (199)
Q Consensus 120 ~~~~~~~ddGV~vVk~I~~~yk~~gykT 147 (199)
......+..+.-..+++++|||..
T Consensus 84 ----~~~~~dL~~~AL~FRLLRqhGy~V 107 (183)
T PF01397_consen 84 ----NEEIDDLYTTALRFRLLRQHGYYV 107 (183)
T ss_dssp ----SHTSSCHHHHHHHHHHHHHTT---
T ss_pred ----ccccCchhHHHHHHHHHHHcCCcc
Confidence 000225888888899999999853
No 303
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=23.07 E-value=1.5e+02 Score=26.77 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=44.3
Q ss_pred cccceeee-ecCCCCcccccchHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHhhhhc-Ccc
Q psy10967 23 LPKSVGIF-LGNDSEYSDERNLQDLKEKVLQLQRESEEKNKII-----------------ENLRNEINAIKQNRHV-SYA 83 (199)
Q Consensus 23 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~aik~l~~~-~~~ 83 (199)
-|.-.||. +-.||-|..-+. .++.+-+.+..++-++|-.|| |-++.=+.+|+.+++. ++.
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~-~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ 92 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTH-NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW 92 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Confidence 57789998 667775555443 466666666666667665443 2222233455666543 333
Q ss_pred cccch---hhhHHHHHcCCccc
Q psy10967 84 TKATQ---TEDYLDVYNNNADG 102 (199)
Q Consensus 84 ~~aTa---~Qa~LA~~agA~YI 102 (199)
+..-- .-+--|+++||+.|
T Consensus 93 ISIDT~~~~va~~AL~~GadiI 114 (282)
T PRK11613 93 ISVDTSKPEVIRESAKAGAHII 114 (282)
T ss_pred EEEECCCHHHHHHHHHcCCCEE
Confidence 22111 22344557899988
No 304
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=23.05 E-value=1.5e+02 Score=28.47 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhhh-----cCcccccch------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHH
Q psy10967 66 NLRNEINAIKQNRH-----VSYATKATQ------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVT 134 (199)
Q Consensus 66 ~~~~~l~aik~l~~-----~~~~~~aTa------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk 134 (199)
+++.-.+|++.-.+ ..|..+.|+ .++-+|.++|+..+- -|. . ..|...+.
T Consensus 181 Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~a~e~G~~~~m------v~~-----~--------~~G~~~l~ 241 (412)
T cd08213 181 RAKESLKARDKAEAETGERKAYLANITAPVREMERRAELVADLGGKYVM------IDV-----V--------VAGWSALQ 241 (412)
T ss_pred HHHHHHHHHHHHHHhhCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEE------eec-----c--------ccChHHHH
Confidence 33444444444333 356666666 788999999997642 122 1 34666666
Q ss_pred HHHHHHHhcCCceEEEE-----c----------ccCCHhhHHHHhCCCEEeeC
Q psy10967 135 KIYNYYKKFGYKTVVMG-----A----------SFRNTGEILALAGCDLMTIG 172 (199)
Q Consensus 135 ~I~~~yk~~gykTkILA-----A----------SFRNv~QV~aLAGaDaVTIp 172 (199)
.+.+..... +--|++ + |++-...+..++|+|.+-+|
T Consensus 242 ~l~~~~~~~--~l~ihaHra~~ga~~r~~~~Gis~~~l~kl~RLaGaD~ih~~ 292 (412)
T cd08213 242 YLRDLAEDY--GLAIHAHRAMHAAFTRNPRHGISMLVLAKLYRLIGVDQLHIG 292 (412)
T ss_pred HHHHhcccc--CeEEEECCCcceecccCCcCcCcHHHHHHHHHHcCCCccccC
Confidence 666655332 233333 2 33333344469999987665
No 305
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=22.87 E-value=99 Score=31.22 Aligned_cols=165 Identities=19% Similarity=0.200 Sum_probs=90.8
Q ss_pred hhhhhhhhhhcCcccccccccceeeeecCCC-CcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcCcc
Q psy10967 5 PRYLYLFFYLNTNLSCKYLPKSVGIFLGNDS-EYSDERNLQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYA 83 (199)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik~l~~~~~~ 83 (199)
|--+||-..+...- =+=+| -.+|+ |.|- +-.|+.--+|.+||++..-|+.. |++.||...|-
T Consensus 113 pGaVyLaA~lAaha-Q~Glp-~f~Iy-G~~vqd~~d~~ip~dV~eKll~faRAa~--------------AV~~Lkgksyl 175 (587)
T TIGR01089 113 PGAVYLAAALAGHS-QKGLP-AFSIY-GHDVQDADDTSIPEDVEEKLLRFARAGL--------------AVASMRGKSYL 175 (587)
T ss_pred CchHHHHHhhhHHh-hCCCC-eeEEe-CCCccccccccCcHHHHHHHHHHHHHHH--------------HHHHhccCeEE
Confidence 33445544443322 23344 44554 5555 66677666789999998877643 67777776554
Q ss_pred cccch-------------hhhHHHHHcCCcccccchhhhhh-------------hcccccCCCCCCCC----------CC
Q psy10967 84 TKATQ-------------TEDYLDVYNNNADGQDENAKHLV-------------RYVANTGTKTYAPT----------ED 127 (199)
Q Consensus 84 ~~aTa-------------~Qa~LA~~agA~YISPFVGRIdD-------------wykk~~G~~~~~~~----------~d 127 (199)
.-.-- +|.|+-++.=.--++=++-|++. |.+++.. ..+... .+
T Consensus 176 ~IG~~smGi~gs~vd~~f~q~~lGmrvE~vD~~EivrR~~~~iyd~eE~e~Al~W~~~~~~-~g~D~n~~~~~~~~~q~~ 254 (587)
T TIGR01089 176 SLGSVSMGIAGSIVNHNFFQEYLGMRNEAVDMTEIRRRIDQKIYDEEELEMALAWADKYCK-YGEDENNKEYQRNAEQSR 254 (587)
T ss_pred EECCccCcccccCCCHHHHHHHhCCeeEEecHHHHHHHHhccCCCHHHHHHHHHHHHHhcc-cCccCCCcccccchhHHH
Confidence 33222 56666544444445557888844 5544411 001100 01
Q ss_pred C----hHHHHHHHHHHHHhc-----------CCceEEEEcccCCHhhHHH-HhCCCEEeeCHHHHHHHhcC----CCccc
Q psy10967 128 P----GVVSVTKIYNYYKKF-----------GYKTVVMGASFRNTGEILA-LAGCDLMTIGPKLLEELENS----TTPVD 187 (199)
Q Consensus 128 d----GV~vVk~I~~~yk~~-----------gykTkILAASFRNv~QV~a-LAGaDaVTIpP~VLeqL~~~----p~~ve 187 (199)
. .+++..-+.++.+.+ ++.---+||.|+-..||.+ ....| +.+.+++. .++=+
T Consensus 255 ~~~e~~vKmyla~Rdlm~gn~~l~~~g~~ee~lg~nAiA~GfqgqR~WtD~~pn~d-------~aeA~LNs~fDwnG~re 327 (587)
T TIGR01089 255 AVWEEVVKMAIIIRDLMQGNPKLADIGRVEEALGHNAIAAGFQGQRHWTDQYPNGD-------TAEAILNSSFDWNGVRE 327 (587)
T ss_pred HHHHHHHHHHHHHHHHHhcCccchhcccchhhcCcchhhcccCccccCCcCCCCcc-------hHHHHhCCccccCCCcC
Confidence 1 255555666666777 4444567899999999997 33334 44555554 34444
Q ss_pred ccCCccc
Q psy10967 188 QMLSEKS 194 (199)
Q Consensus 188 ~~L~~~~ 194 (199)
+....+.
T Consensus 328 pi~~AcE 334 (587)
T TIGR01089 328 PFVVATE 334 (587)
T ss_pred Ceeeeec
Confidence 4444443
No 306
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.64 E-value=1.5e+02 Score=26.20 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=31.5
Q ss_pred HHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEee---CHHHHHHHh
Q psy10967 137 YNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI---GPKLLEELE 180 (199)
Q Consensus 137 ~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTI---pP~VLeqL~ 180 (199)
.+..++..-+...++-|.+|.+|+.+ .+|+|++-+ +|+-++++.
T Consensus 171 v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v 219 (269)
T cd01568 171 VKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSPEELKEAV 219 (269)
T ss_pred HHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 34445544445679999999999996 699999765 566666554
No 307
>PRK10060 RNase II stability modulator; Provisional
Probab=22.52 E-value=3.6e+02 Score=26.52 Aligned_cols=100 Identities=11% Similarity=-0.019 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhhhcCcccccch-------hhhHHHHHcCCccccc---chhhhhhhcccccCCCCCCCCCCChHHH
Q psy10967 63 IIENLRNEINAIKQNRHVSYATKATQ-------TEDYLDVYNNNADGQD---ENAKHLVRYVANTGTKTYAPTEDPGVVS 132 (199)
Q Consensus 63 ~~~~~~~~l~aik~l~~~~~~~~aTa-------~Qa~LA~~agA~YISP---FVGRIdDwykk~~G~~~~~~~~ddGV~v 132 (199)
++++...-.+.++.|++.|+.+.--- .+-+. .-..++|=- ||..+.+ ......+
T Consensus 536 ~~~~~~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~--~l~~d~iKiD~sfv~~i~~--------------~~~~~~~ 599 (663)
T PRK10060 536 LIENEELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLA--RFPIDAIKLDQSFVRDIHK--------------QPVSQSL 599 (663)
T ss_pred hhcCHHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHH--hCCCCEEEECHHHHhcccc--------------CcchHHH
Confidence 34555556678899999999987432 11111 123444322 3333322 1346788
Q ss_pred HHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEe-------eCHHHHHHHh
Q psy10967 133 VTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMT-------IGPKLLEELE 180 (199)
Q Consensus 133 Vk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVT-------IpP~VLeqL~ 180 (199)
++.|..+-+..| .+|+|-.+-+.+|... ..|||++- +|++-+++++
T Consensus 600 v~~ii~~a~~lg--~~viAeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l 654 (663)
T PRK10060 600 VRAIVAVAQALN--LQVIAEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWY 654 (663)
T ss_pred HHHHHHHHHHCC--CcEEEecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHH
Confidence 999999988875 7899999999999996 69999753 4555455544
No 308
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=22.52 E-value=3.7e+02 Score=25.25 Aligned_cols=83 Identities=11% Similarity=0.127 Sum_probs=48.0
Q ss_pred ccccccccceeeeecCCCCcccccchHHHHHHHHHHHHHhHHH-HHHH---------HHHHHHHHHHHhhh-hcCccccc
Q psy10967 18 LSCKYLPKSVGIFLGNDSEYSDERNLQDLKEKVLQLQRESEEK-NKII---------ENLRNEINAIKQNR-HVSYATKA 86 (199)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~l~aik~l~-~~~~~~~a 86 (199)
-.|+|-+.|...=-|....+- -+..|-|..-.++.+.| .+.. +....-.++||.-| +.|..|.+
T Consensus 63 edC~yC~qS~~~~~~~~~~~l-----~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~ 137 (335)
T COG0502 63 EDCAYCSQSARYKTGVKARKL-----MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCA 137 (335)
T ss_pred CCCCCccccccCcCCCchhhc-----CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhh
Confidence 358888888766444444433 33333444455556666 1100 22222334555555 56788888
Q ss_pred ch-----hhhHHHHHcCCcccccc
Q psy10967 87 TQ-----TEDYLDVYNNNADGQDE 105 (199)
Q Consensus 87 Ta-----~Qa~LA~~agA~YISPF 105 (199)
|. -|+---..||+++..=.
T Consensus 138 slG~l~~eq~~~L~~aGvd~ynhN 161 (335)
T COG0502 138 SLGMLTEEQAEKLADAGVDRYNHN 161 (335)
T ss_pred ccCCCCHHHHHHHHHcChhheecc
Confidence 87 67777789999986543
No 309
>KOG3313|consensus
Probab=22.49 E-value=1.1e+02 Score=26.71 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=50.6
Q ss_pred hhhcCcccccc---cccceeeeecCCC--CcccccchHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhhhhcCcc
Q psy10967 12 FYLNTNLSCKY---LPKSVGIFLGNDS--EYSDERNLQDLKEKVLQLQ---RESEEKNKIIENLRNEINAIKQNRHVSYA 83 (199)
Q Consensus 12 ~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~aik~l~~~~~~ 83 (199)
|-|+.++-||- -|.+|+++||-+- ||+-|.--.=||.++-..+ ..||+- ++-||..+..+..+-+.-||
T Consensus 94 f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~D---ldfLrdQvTTtEVN~ArvYN 170 (187)
T KOG3313|consen 94 FLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEED---LDFLRDQVTTTEVNMARVYN 170 (187)
T ss_pred EEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhceeeeeeeeeeee
Confidence 55777777775 4789999999874 7765544333443332222 223332 45677666666666666555
Q ss_pred cccchhhhHHHHHcCC
Q psy10967 84 TKATQTEDYLDVYNNN 99 (199)
Q Consensus 84 ~~aTa~Qa~LA~~agA 99 (199)
-..-..|+-.+..+|+
T Consensus 171 w~V~~R~~~~~t~~~~ 186 (187)
T KOG3313|consen 171 WDVKKRRAAKATNNGA 186 (187)
T ss_pred chHHHHHHHhhcccCC
Confidence 5544566666666654
No 310
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.47 E-value=2.3e+02 Score=22.46 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEEeeCHHH
Q psy10967 131 VSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKL 175 (199)
Q Consensus 131 ~vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaVTIpP~V 175 (199)
-+|.++...-+..|-+..|.|-|-.-..... ..+|++-++|.+
T Consensus 16 lLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~--~~~DvvLlGPQv 58 (102)
T COG1440 16 LLVTKMKKAAESKGKDVTIEAYSETELSEYI--DNADVVLLGPQV 58 (102)
T ss_pred HHHHHHHHHHHhCCCceEEEEechhHHHHhh--hcCCEEEEChHH
Confidence 4689999999999999999999866555544 489999999998
No 311
>PRK06739 pyruvate kinase; Validated
Probab=22.38 E-value=1.4e+02 Score=27.92 Aligned_cols=49 Identities=8% Similarity=-0.002 Sum_probs=32.3
Q ss_pred HHHHcCCccccc-chhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCC-ceEEEE-----cccCCHhhHHH
Q psy10967 93 LDVYNNNADGQD-ENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGY-KTVVMG-----ASFRNTGEILA 162 (199)
Q Consensus 93 LA~~agA~YISP-FVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gy-kTkILA-----ASFRNv~QV~a 162 (199)
.|+..|.|||+- ||..-+|. .++.++++.+|. +.+|+| -+++|.++|++
T Consensus 173 f~~~~~vD~ia~SFVr~~~Dv---------------------~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~ 228 (352)
T PRK06739 173 FLLEEDVDFIACSFVRKPSHI---------------------KEIRDFIQQYKETSPNLIAKIETMEAIENFQDICK 228 (352)
T ss_pred HHHHcCCCEEEECCCCCHHHH---------------------HHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHH
Confidence 477889999987 66554443 556666677654 566665 56666666664
No 312
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.37 E-value=3.6e+02 Score=20.56 Aligned_cols=87 Identities=10% Similarity=0.148 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhcCcccccch----hhhHHH--HHcCCcccccchhhhhhhcccccCCCCCCCCCCCh
Q psy10967 56 ESEEKNKIIENLRNEINAIKQNRHVSYATKATQ----TEDYLD--VYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPG 129 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA--~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddG 129 (199)
.|+-|++++..+ |+..|+.|.--. .+.+.+ .+.++++|.--.- ....
T Consensus 11 ~H~lG~~~~~~~---------l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~------------------~~~~ 63 (122)
T cd02071 11 GHDRGAKVIARA---------LRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSL------------------SGGH 63 (122)
T ss_pred hhHHHHHHHHHH---------HHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccc------------------chhh
Confidence 366777776654 678888876433 333322 2455655554221 1345
Q ss_pred HHHHHHHHHHHHhcCC-ceEEEEcccCCHhhHHH--HhCCCEE
Q psy10967 130 VVSVTKIYNYYKKFGY-KTVVMGASFRNTGEILA--LAGCDLM 169 (199)
Q Consensus 130 V~vVk~I~~~yk~~gy-kTkILAASFRNv~QV~a--LAGaDaV 169 (199)
.+.++++.+.+++.+. +..++++.=...+++-. .+|.|.+
T Consensus 64 ~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 64 MTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Confidence 7788999999999877 77777775333443433 6898853
No 313
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=22.35 E-value=2.2e+02 Score=25.90 Aligned_cols=88 Identities=14% Similarity=0.231 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCcccccchhhhHHHH-------HcCCcccccchhhhhhhcccccCCCCCCCCCCChHHH
Q psy10967 60 KNKIIENLRNEINAIKQNRHVSYATKATQTEDYLDV-------YNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVS 132 (199)
Q Consensus 60 ~~~~~~~~~~~l~aik~l~~~~~~~~aTa~Qa~LA~-------~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~v 132 (199)
|.++|+.+|..+++. . -|. |. -| .++|. ..|--.+--+.||.|-+.- .+......| ++-..
T Consensus 75 g~~~i~~iK~~~e~~--c--p~~-VS-cA--DiialAar~av~~~GGP~~~v~~GR~D~~~s-~~~~~~~lP---~p~~~ 142 (298)
T cd00693 75 GFDVIDDIKAALEAA--C--PGV-VS-CA--DILALAARDAVVLAGGPSYEVPLGRRDGRVS-SANDVGNLP---SPFFS 142 (298)
T ss_pred hhHHHHHHHHHHHhh--C--CCc-cc-HH--HHHHHhhhhceeccCCCcccccCCCcCCccc-CcccccCCC---CcccC
Confidence 788888888666521 1 111 11 12 22222 2366666668999887621 111001112 12233
Q ss_pred HHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEE
Q psy10967 133 VTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLM 169 (199)
Q Consensus 133 Vk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaV 169 (199)
+.++.+.|+..|++ .+++.+|.|+|.+
T Consensus 143 ~~~l~~~F~~~G~~----------~~d~VaL~GaHTi 169 (298)
T cd00693 143 VSQLISLFASKGLT----------VTDLVALSGAHTI 169 (298)
T ss_pred HHHHHHHHHHcCCC----------HHHheeeccccee
Confidence 56777888888864 6777788888765
No 314
>PRK06256 biotin synthase; Validated
Probab=22.30 E-value=5.5e+02 Score=22.73 Aligned_cols=101 Identities=9% Similarity=0.028 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhhcCcccccch------------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHH
Q psy10967 67 LRNEINAIKQNRHVSYATKATQ------------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVT 134 (199)
Q Consensus 67 ~~~~l~aik~l~~~~~~~~aTa------------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk 134 (199)
..+-+++|+.+++.|+.+..+. .-.....+.|.+.|. ++++.= .+| ..+.........-+.
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~--i~~l~P----~pG-T~l~~~~~~~~~e~l 258 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIP--INFLNP----IPG-TPLENHPELTPLECL 258 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEe--eccccc----CCC-CCCCCCCCCCHHHHH
Confidence 3445789999999999988764 112222345555431 111110 012 111111122344445
Q ss_pred HHHHHHHhcCCceEEEEcccCCH----hhHHHHhCCCEEeeCHH
Q psy10967 135 KIYNYYKKFGYKTVVMGASFRNT----GEILALAGCDLMTIGPK 174 (199)
Q Consensus 135 ~I~~~yk~~gykTkILAASFRNv----~QV~aLAGaDaVTIpP~ 174 (199)
++..+++-.-.++.|..|+=|.. .|-..++|++.+.++--
T Consensus 259 ~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~~ 302 (336)
T PRK06256 259 KTIAIFRLINPDKEIRIAGGREVNLRSLQPLGLGGANSVIVGNY 302 (336)
T ss_pred HHHHHHHHHCCCCeeEecCchhhhchhhHHHHhccCceeeECCc
Confidence 55567777766788866666633 23334679999888754
No 315
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=22.13 E-value=2.2e+02 Score=27.73 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhcCcccccc-h----hhhHHHHHcCCc-cc-ccchhhhhhhcccccCCCCCCCCCCChHHHHHHHH
Q psy10967 65 ENLRNEINAIKQNRHVSYATKAT-Q----TEDYLDVYNNNA-DG-QDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIY 137 (199)
Q Consensus 65 ~~~~~~l~aik~l~~~~~~~~aT-a----~Qa~LA~~agA~-YI-SPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~ 137 (199)
.++=.++.+++.+++. +.+..- . .++++++..=.. -. .|-|. |-||. + .++..-.+...
T Consensus 141 ~~~~~~~~~~~~f~~~-~~v~~~~~~~~~vd~~l~~y~~~~~~~~~P~IA-IvDf~----~--------~~~~~Ef~~f~ 206 (445)
T PF14403_consen 141 ARIFLELPAMQEFAER-YRVEPLPLFQSWVDALLDIYRTFGGRVEKPNIA-IVDFL----E--------YPTLSEFEVFQ 206 (445)
T ss_pred HHHHHhhHHHHHHHhh-cCccCcchHHHHHHHHHHHHHHhcCcCCCCcEE-EEecc----c--------CCccchHHHHH
Confidence 3333445577777653 444311 1 233333322111 12 46666 67773 2 57788889999
Q ss_pred HHHHhcCCceEEE
Q psy10967 138 NYYKKFGYKTVVM 150 (199)
Q Consensus 138 ~~yk~~gykTkIL 150 (199)
++|..+|++|.|-
T Consensus 207 ~~f~~~G~~~vI~ 219 (445)
T PF14403_consen 207 RLFEEHGYDCVIC 219 (445)
T ss_pred HHHHHcCCceEec
Confidence 9999999999885
No 316
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=22.12 E-value=1.3e+02 Score=26.43 Aligned_cols=91 Identities=18% Similarity=0.073 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhhhc-Ccccccch----------------hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCC
Q psy10967 64 IENLRNEINAIKQNRHV-SYATKATQ----------------TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTE 126 (199)
Q Consensus 64 ~~~~~~~l~aik~l~~~-~~~~~aTa----------------~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ 126 (199)
++-.-..|+|++.-+.+ ++=+.|-- -++|. +||||.|-| + |
T Consensus 119 ~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~--eAGAD~ifi-------~-----~-------- 176 (238)
T PF13714_consen 119 PEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYA--EAGADMIFI-------P-----G-------- 176 (238)
T ss_dssp HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHH--HTT-SEEEE-------T-----T--------
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHH--HcCCCEEEe-------C-----C--------
Confidence 34455556677666554 43333211 45566 799998876 2 1
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccC-CHhhHHHHhCCCEEeeCHHHHHHHh
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFR-NTGEILALAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFR-Nv~QV~aLAGaDaVTIpP~VLeqL~ 180 (199)
-.-.+-++++.+.+ +.+--++. .-. -.-+-+...|...++.|+.++....
T Consensus 177 ~~~~~~i~~~~~~~---~~Pl~v~~-~~~~~~~~eL~~lGv~~v~~~~~~~~aa~ 227 (238)
T PF13714_consen 177 LQSEEEIERIVKAV---DGPLNVNP-GPGTLSAEELAELGVKRVSYGNSLLRAAM 227 (238)
T ss_dssp SSSHHHHHHHHHHH---SSEEEEET-TSSSS-HHHHHHTTESEEEETSHHHHHHH
T ss_pred CCCHHHHHHHHHhc---CCCEEEEc-CCCCCCHHHHHHCCCcEEEEcHHHHHHHH
Confidence 11123344444444 45655555 211 1112223699999999999887665
No 317
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.98 E-value=1.8e+02 Score=25.40 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=38.1
Q ss_pred HHHHHhhhhc-Ccccccch-----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcC
Q psy10967 71 INAIKQNRHV-SYATKATQ-----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFG 144 (199)
Q Consensus 71 l~aik~l~~~-~~~~~aTa-----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~g 144 (199)
++.++.+++. ++.+.++- .++.-++.+||+.|+-.=+=+.|. +=--++.+.+.++++++|
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p--------------~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDP--------------EAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcCh--------------HHHHHHHHHHHHHHHHcC
Confidence 4566666653 56666544 556666689999887533322221 112456667777788888
Q ss_pred Cce
Q psy10967 145 YKT 147 (199)
Q Consensus 145 ykT 147 (199)
+++
T Consensus 286 ~~~ 288 (296)
T cd04740 286 IKS 288 (296)
T ss_pred CCC
Confidence 654
No 318
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=21.92 E-value=2.8e+02 Score=21.23 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=37.1
Q ss_pred hHHHH-HHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCEEeeCHHHHHHHh
Q psy10967 129 GVVSV-TKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDLMTIGPKLLEELE 180 (199)
Q Consensus 129 GV~vV-k~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDaVTIpP~VLeqL~ 180 (199)
|-.++ +++....+.+|.+.+|-|.|...... ..-.+|++-++|.+-.++.
T Consensus 15 sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~--~~~~~DviLl~Pqi~~~~~ 65 (106)
T PRK10499 15 STSLLVSKMRAQAEKYEVPVIIEAFPETLAGE--KGQNADVVLLGPQIAYMLP 65 (106)
T ss_pred cHHHHHHHHHHHHHHCCCCEEEEEeecchhhc--cccCCCEEEECHHHHHHHH
Confidence 44444 48888889999999999988654443 2456899999999966553
No 319
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=21.91 E-value=1.2e+02 Score=27.33 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=23.4
Q ss_pred eEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 147 TVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 147 TkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+-+.++.+|+++|..+ .+|||.+.++-
T Consensus 193 ~LivGGGIrs~E~A~~~a~agAD~IVtG~ 221 (240)
T COG1646 193 PLIVGGGIRSPEQAREMAEAGADTIVTGT 221 (240)
T ss_pred eEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 7788999999999997 67999987763
No 320
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.89 E-value=2.1e+02 Score=20.86 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccC---CHhhHHHH-hCCCEEeeC
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFR---NTGEILAL-AGCDLMTIG 172 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFR---Nv~QV~aL-AGaDaVTIp 172 (199)
.+....+.++.+.+++.+.++.|+.+..- +++++++. .|+|++.++
T Consensus 62 ~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 62 TPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp STHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEE
T ss_pred cCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCcceecCC
Confidence 35677778888889999888777776644 46666665 999998765
No 321
>PLN02389 biotin synthase
Probab=21.79 E-value=3.9e+02 Score=25.06 Aligned_cols=88 Identities=6% Similarity=-0.052 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhhhcCcccccch----hhhHHHH-HcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHH
Q psy10967 64 IENLRNEINAIKQNRHVSYATKATQ----TEDYLDV-YNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYN 138 (199)
Q Consensus 64 ~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~-~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~ 138 (199)
++.+.+-++.|| +.++.+.+|. .+.+... .||.+.+.--+.-.++.|++.-. .. ..+-.-+..+
T Consensus 152 ~e~i~eiir~ik---~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-------~~-s~e~rl~ti~ 220 (379)
T PLN02389 152 FNQILEYVKEIR---GMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-------TR-SYDDRLETLE 220 (379)
T ss_pred HHHHHHHHHHHh---cCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCC-------CC-CHHHHHHHHH
Confidence 444444444554 5677777666 3333333 78999764422211113322111 12 2344444455
Q ss_pred HHHhcCCce--EEEEcccCCHhhHHH
Q psy10967 139 YYKKFGYKT--VVMGASFRNTGEILA 162 (199)
Q Consensus 139 ~yk~~gykT--kILAASFRNv~QV~a 162 (199)
..++.|+++ =+|-+---+.+++.+
T Consensus 221 ~a~~~Gi~v~sg~IiGlgEt~edrv~ 246 (379)
T PLN02389 221 AVREAGISVCSGGIIGLGEAEEDRVG 246 (379)
T ss_pred HHHHcCCeEeEEEEECCCCCHHHHHH
Confidence 556678765 344455666666553
No 322
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.77 E-value=2.9e+02 Score=23.82 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC-----HHHHHHHhcC
Q psy10967 128 PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG-----PKLLEELENS 182 (199)
Q Consensus 128 dGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp-----P~VLeqL~~~ 182 (199)
+..++++++.+. -+ -.-..++.+|+.+++.. .+|+|.+.|+ |++++++.+.
T Consensus 60 ~n~~~i~~i~~~---~~-~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~ 117 (228)
T PRK04128 60 KNLDVVKNIIRE---TG-LKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSE 117 (228)
T ss_pred chHHHHHHHHhh---CC-CCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHH
Confidence 457777777653 11 23566889999999986 5799987765 7888888754
No 323
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=21.74 E-value=1.6e+02 Score=28.03 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=70.1
Q ss_pred eeecCCCCccc----ccchHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHhhhhc-Ccccccch----hhhHHHHH
Q psy10967 29 IFLGNDSEYSD----ERNLQDLKEKVLQLQRESEEKNKIIENL---RNEINAIKQNRHV-SYATKATQ----TEDYLDVY 96 (199)
Q Consensus 29 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~aik~l~~~-~~~~~aTa----~Qa~LA~~ 96 (199)
+.+|.+..-+- .-.-.|.+.-+-|..+..++|-.+++-- .+.-+|++.+++. .+.+-|-- .-|+.|+.
T Consensus 20 v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~ 99 (360)
T PRK00366 20 VPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAE 99 (360)
T ss_pred EeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHH
Confidence 44555544332 2346788999999999999998766421 2344455555554 34443333 66999999
Q ss_pred cCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEE--EcccCCHhhHHHHhC
Q psy10967 97 NNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVM--GASFRNTGEILALAG 165 (199)
Q Consensus 97 agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkIL--AASFRNv~QV~aLAG 165 (199)
+|++-|--.-|-|.+| -+-++++.+.-+.++.+.+|= ++|+ ..++++..|
T Consensus 100 ~G~~~iRINPGNig~~-----------------~~~v~~vv~~ak~~~ipIRIGvN~GSL--~~~~~~~yg 151 (360)
T PRK00366 100 AGADALRINPGNIGKR-----------------DERVREVVEAAKDYGIPIRIGVNAGSL--EKDLLEKYG 151 (360)
T ss_pred hCCCEEEECCCCCCch-----------------HHHHHHHHHHHHHCCCCEEEecCCccC--hHHHHHHcC
Confidence 9999884433333221 355667777777777665543 3444 245555444
No 324
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=21.73 E-value=1.5e+02 Score=25.33 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEee
Q psy10967 126 EDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTI 171 (199)
Q Consensus 126 ~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTI 171 (199)
..+|++.++++.+. | .++.+-.+-++.|+.. .+||++++.
T Consensus 87 T~~gl~ai~~L~~~----g--i~v~~T~V~s~~Qa~~Aa~AGA~yvsP 128 (211)
T cd00956 87 TEDGLKAIKKLSEE----G--IKTNVTAIFSAAQALLAAKAGATYVSP 128 (211)
T ss_pred cHhHHHHHHHHHHc----C--CceeeEEecCHHHHHHHHHcCCCEEEE
Confidence 45788888877644 4 6788888999999995 899999554
No 325
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=21.66 E-value=81 Score=30.63 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.6
Q ss_pred ceEEEEcccCCHhhHHH--HhCCCEEeeCH
Q psy10967 146 KTVVMGASFRNTGEILA--LAGCDLMTIGP 173 (199)
Q Consensus 146 kTkILAASFRNv~QV~a--LAGaDaVTIpP 173 (199)
+-.+++.|.+|..|+.. ..|+|++.++|
T Consensus 299 ~~~iIGvStHs~eEl~~A~~~gaDYI~lGP 328 (437)
T PRK12290 299 AGIRLGLSTHGYYELLRIVQIQPSYIALGH 328 (437)
T ss_pred CCCEEEEecCCHHHHHHHhhcCCCEEEECC
Confidence 35789999999999885 69999999987
No 326
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=21.55 E-value=2.3e+02 Score=24.30 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHH------HHHHHh
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPK------LLEELE 180 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~------VLeqL~ 180 (199)
.+...+|++|.+.. +. .-.+++.+|+.+++.. -+||+.+.++-. +++++.
T Consensus 61 ~~n~~~i~~i~~~~---~~-pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~ 118 (241)
T PRK14024 61 GSNRELLAEVVGKL---DV-KVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVI 118 (241)
T ss_pred CccHHHHHHHHHHc---CC-CEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHH
Confidence 34567888887754 22 3447899999999997 479999988754 455555
No 327
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.29 E-value=3e+02 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=12.0
Q ss_pred EeeCHHHHHHHhc-CCC
Q psy10967 169 MTIGPKLLEELEN-STT 184 (199)
Q Consensus 169 VTIpP~VLeqL~~-~p~ 184 (199)
+.+||+++.+|.+ +|.
T Consensus 141 ~~l~~~~~~~La~~~~n 157 (296)
T TIGR03249 141 AVLNADTLERLADRCPN 157 (296)
T ss_pred CCCCHHHHHHHHhhCCC
Confidence 4678888888886 663
No 328
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=21.19 E-value=1.1e+02 Score=21.51 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCceEEEEcccCCHhhHHH-HhCCCEEeeCHHHH-HHHhc
Q psy10967 134 TKIYNYYKKFGYKTVVMGASFRNTGEILA-LAGCDLMTIGPKLL-EELEN 181 (199)
Q Consensus 134 k~I~~~yk~~gykTkILAASFRNv~QV~a-LAGaDaVTIpP~VL-eqL~~ 181 (199)
.++.+.++++|+++.+.+.+ ...... ...+|++-++|.+- +++..
T Consensus 18 ~~i~~~~~~~gi~~~~~~~~---~~~~~~~~~~~D~il~~~~i~~~~~~~ 64 (90)
T PF02302_consen 18 NKIKKALKELGIEVEVSAGS---ILEVEEIADDADLILLTPQIAYEDLKE 64 (90)
T ss_dssp HHHHHHHHHTTECEEEEEEE---TTTHHHHHTT-SEEEEEESSGGHHHHH
T ss_pred HHHHHHHHhccCceEEEEec---ccccccccCCCcEEEEcCccchhhhhh
Confidence 88999999999999999888 333333 45699988777765 34443
No 329
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.14 E-value=3.7e+02 Score=23.21 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEe---eCHHHHHHHhcCCCcc-cccCCccc
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMT---IGPKLLEELENSTTPV-DQMLSEKS 194 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVT---IpP~VLeqL~~~p~~v-e~~L~~~~ 194 (199)
....+.|+++.+-| -+..|=|+++.+++|+.+ .+|++++. ..|++++...++..+. +.-++|+.
T Consensus 40 p~a~~~I~~l~~~~----~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~TptE 109 (201)
T PRK06015 40 PAALDAIRAVAAEV----EEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAATPSE 109 (201)
T ss_pred ccHHHHHHHHHHHC----CCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHH
Confidence 34677777765433 256777889999999996 79999864 3467777777666554 45555554
No 330
>PLN02608 L-ascorbate peroxidase
Probab=21.09 E-value=2.6e+02 Score=25.60 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=34.4
Q ss_pred HcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHHHhCCCE
Q psy10967 96 YNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILALAGCDL 168 (199)
Q Consensus 96 ~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~aLAGaDa 168 (199)
.+|--.+.-+.||.|..- . +.....|. +-..+..+.+.|...|+ |+.++.+|.|+|.
T Consensus 105 ~~GGP~~~v~~GR~D~~~-s--~~~~~LP~---p~~~~~~l~~~F~~~Gl----------~~~D~VaLsGAHT 161 (289)
T PLN02608 105 VTGGPTIDFVPGRKDSNA-C--PEEGRLPD---AKKGAKHLRDVFYRMGL----------SDKDIVALSGGHT 161 (289)
T ss_pred hcCCCccCCCCCCCCCCc-C--CccCCCcC---CCCCHHHHHHHHHHcCC----------CHHHHhhhccccc
Confidence 346667777899998651 1 11111221 12235677778888875 4677778888884
No 331
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=21.08 E-value=1.3e+02 Score=27.60 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCceEEE-EcccCCHhhHHH--HhCCCEEeeCHHHH
Q psy10967 133 VTKIYNYYKKFGYKTVVM-GASFRNTGEILA--LAGCDLMTIGPKLL 176 (199)
Q Consensus 133 Vk~I~~~yk~~gykTkIL-AASFRNv~QV~a--LAGaDaVTIpP~VL 176 (199)
++-++.+++..+-+.-|+ .+++.+.+++.+ .+|||+|-|.-.++
T Consensus 275 l~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~ 321 (335)
T TIGR01036 275 TEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFI 321 (335)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHH
Confidence 444555555444456666 556999999997 68999987765554
No 332
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=21.07 E-value=6.1e+02 Score=22.77 Aligned_cols=78 Identities=10% Similarity=-0.000 Sum_probs=59.0
Q ss_pred hhhHHHHH-cCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhC
Q psy10967 89 TEDYLDVY-NNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAG 165 (199)
Q Consensus 89 ~Qa~LA~~-agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAG 165 (199)
.|+--+++ .|+||+++=+|-+-..|+..+ .=|++.+++|.+.. +.+.-.+++|==+.+++.. .+|
T Consensus 156 eea~~f~~~tg~DyLAvaiG~~hg~~~~~~---------~l~~~~L~~i~~~~---~iPlV~hG~SGI~~e~~~~~i~~G 223 (281)
T PRK06806 156 TEAKRFAEETDVDALAVAIGNAHGMYNGDP---------NLRFDRLQEINDVV---HIPLVLHGGSGISPEDFKKCIQHG 223 (281)
T ss_pred HHHHHHHHhhCCCEEEEccCCCCCCCCCCC---------ccCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcC
Confidence 77777774 599999998888776653111 23788888888765 5788888888778888886 699
Q ss_pred CCEEeeCHHHHHH
Q psy10967 166 CDLMTIGPKLLEE 178 (199)
Q Consensus 166 aDaVTIpP~VLeq 178 (199)
++-+-|.-++...
T Consensus 224 ~~kinv~T~i~~a 236 (281)
T PRK06806 224 IRKINVATATFNS 236 (281)
T ss_pred CcEEEEhHHHHHH
Confidence 9999988888653
No 333
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.07 E-value=5.7e+02 Score=22.40 Aligned_cols=77 Identities=13% Similarity=-0.076 Sum_probs=42.5
Q ss_pred HHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--Hh-CCCEE
Q psy10967 93 LDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LA-GCDLM 169 (199)
Q Consensus 93 LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LA-GaDaV 169 (199)
....+|++||.---|...+..... . .........+..++.+.+.+ + -.-+.+.++++++++.+ .. |||.|
T Consensus 236 ~l~~~G~d~i~vs~g~~~~~~~~~-~--~~~~~~~~~~~~~~~ir~~~---~-iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 236 ALEEAGVDALHVSGGSYESPPPII-P--PPYVPEGYFLELAEKIKKAV---K-IPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred HHHHcCCCEEEeCCCCCccccccc-C--CCCCCcchhHHHHHHHHHHC---C-CCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 345789999975444332211000 0 00000122455566665543 2 34566689999999886 34 89999
Q ss_pred eeCHHHH
Q psy10967 170 TIGPKLL 176 (199)
Q Consensus 170 TIpP~VL 176 (199)
-++-.++
T Consensus 309 ~igR~~l 315 (327)
T cd02803 309 ALGRALL 315 (327)
T ss_pred eecHHHH
Confidence 8875544
No 334
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.07 E-value=2e+02 Score=24.08 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeCHHHHHH
Q psy10967 128 PGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIGPKLLEE 178 (199)
Q Consensus 128 dGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIpP~VLeq 178 (199)
+..+.++++.+.. . -.-+.++.+++.+++.+ .+||+.+.++-.+++.
T Consensus 180 ~~~~~i~~i~~~~---~-iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 180 VNTEPVKELVDSV---D-IPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred CCHHHHHHHHHhC---C-CCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 4567777776643 2 34666777999999986 6999999999887553
No 335
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=21.06 E-value=95 Score=28.05 Aligned_cols=111 Identities=9% Similarity=0.019 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCcccccch----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHH-
Q psy10967 57 SEEKNKIIENLRNEINAIKQNRHVSYATKATQ----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVV- 131 (199)
Q Consensus 57 ~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~- 131 (199)
+|-|+.+......--.+++.|+..||.|.--. .|-=.|+..||++|--|-|+--|.... .+.-+
T Consensus 100 TegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~d~~qi~aa~~~gA~~IELhTG~Ya~~~~~-----------~~~~~~ 168 (243)
T COG0854 100 TEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDPDPEQIEAAAEVGAPRIELHTGPYADAHDA-----------AEQARA 168 (243)
T ss_pred cccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhCCCEEEEecccccccCCh-----------HHHHHH
Confidence 55666666555444468999999999998444 777788999999999999998776310 01222
Q ss_pred --HHHHHHHHHHh-cCCceEEEEc---ccCCHhhHHHHhCCCEEeeCHHHHHH
Q psy10967 132 --SVTKIYNYYKK-FGYKTVVMGA---SFRNTGEILALAGCDLMTIGPKLLEE 178 (199)
Q Consensus 132 --vVk~I~~~yk~-~gykTkILAA---SFRNv~QV~aLAGaDaVTIpP~VLeq 178 (199)
.+.++...-+. ...--+|=|+ ...|+.-+.+..+..=+-|+-.+..+
T Consensus 169 ~~el~rl~~~a~~A~~lGL~VnAGHgLty~Nv~~~a~~~~i~ElnIGH~iia~ 221 (243)
T COG0854 169 DAELERLAKAAKLAAELGLKVNAGHGLTYHNVKPLAAIPPLAELNIGHSIIAR 221 (243)
T ss_pred HHHHHHHHHHHHHHHHcCceEecCCCccccchHHHhcCCcceeecccHHHHHH
Confidence 22233222111 1122333332 45677777665555556666555443
No 336
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=20.91 E-value=1.9e+02 Score=26.84 Aligned_cols=63 Identities=10% Similarity=0.015 Sum_probs=42.9
Q ss_pred HHHHHhhhhc----Ccccccch-----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHH
Q psy10967 71 INAIKQNRHV----SYATKATQ-----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYK 141 (199)
Q Consensus 71 l~aik~l~~~----~~~~~aTa-----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk 141 (199)
++.|+++++. ++.+-+.- ..++-.+.+||+.|+-+=+=+.+ | -+---.+++++.++++
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~------g-------p~ii~~I~~~L~~~l~ 305 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQY------G-------FRIVEDMISGLSHYMD 305 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccC------C-------chhHHHHHHHHHHHHH
Confidence 6788888775 56676554 67777778999999875554431 1 0123466777778888
Q ss_pred hcCCc
Q psy10967 142 KFGYK 146 (199)
Q Consensus 142 ~~gyk 146 (199)
.+|++
T Consensus 306 ~~g~~ 310 (420)
T PRK08318 306 EKGFA 310 (420)
T ss_pred HcCcc
Confidence 88864
No 337
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.81 E-value=4.9e+02 Score=23.09 Aligned_cols=42 Identities=10% Similarity=0.377 Sum_probs=30.2
Q ss_pred ccccccccceeeeecCCCCcccccchHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10967 18 LSCKYLPKSVGIFLGNDSEYSDERNLQDLKEKVLQLQRESEEKNKIIENL 67 (199)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (199)
+...-+|+-|||..-....|...+++. ...-|++|.+.+..+
T Consensus 9 ~~~~~~P~HvaiImDGNrRwAk~~g~~--------~~~GH~~G~~~l~~i 50 (243)
T PRK14829 9 IPKNKLPRHIAVVMDGNGRWATQRGLK--------RTEGHKAGEPVLFDV 50 (243)
T ss_pred cccCCCCCeEEEecCCCHHHHHHCCCC--------hhHHHHHHHHHHHHH
Confidence 455679999999987777777766653 334788887766554
No 338
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.40 E-value=1.8e+02 Score=20.63 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcCcccccch
Q psy10967 43 LQDLKEKVLQLQRESEEKNKIIENLRNEINAIKQNRHVSYATKATQ 88 (199)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aik~l~~~~~~~~aTa 88 (199)
+.++.+.+-.+.+..+.--+-|.++.+.|+-|+..-+....+..++
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGa 60 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666778999999999999988888877666
No 339
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.33 E-value=3.1e+02 Score=23.49 Aligned_cols=64 Identities=11% Similarity=0.180 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEcccCCHhhHHH--HhCCCEEeeC---HHHHHHHhcCCCccc-ccCCccc
Q psy10967 127 DPGVVSVTKIYNYYKKFGYKTVVMGASFRNTGEILA--LAGCDLMTIG---PKLLEELENSTTPVD-QMLSEKS 194 (199)
Q Consensus 127 ddGV~vVk~I~~~yk~~gykTkILAASFRNv~QV~a--LAGaDaVTIp---P~VLeqL~~~p~~ve-~~L~~~~ 194 (199)
.++.++|+.+.+.+ -+..|=|+++.+++|+.+ .+||+++.-| |++++...++.-++- .-++|+.
T Consensus 44 ~~a~~~I~~l~~~~----p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~~~~~i~~iPG~~TptE 113 (196)
T PF01081_consen 44 PNALEAIEALRKEF----PDLLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYAREYGIPYIPGVMTPTE 113 (196)
T ss_dssp TTHHHHHHHHHHHH----TTSEEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHHHHHHTSEEEEEESSHHH
T ss_pred ccHHHHHHHHHHHC----CCCeeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcccCCcCCHHH
Confidence 35677887776654 267888999999999996 7999986543 677777776666553 3555543
No 340
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=20.28 E-value=4.6e+02 Score=23.42 Aligned_cols=122 Identities=12% Similarity=-0.003 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhHHH-----HHHHHH---HHHHHHHHHhhhhcCc---ccccch---hhh-HHHHHcCCcccccchhhh
Q psy10967 45 DLKEKVLQLQRESEEK-----NKIIEN---LRNEINAIKQNRHVSY---ATKATQ---TED-YLDVYNNNADGQDENAKH 109 (199)
Q Consensus 45 ~~~~~~~~~~~~~~~~-----~~~~~~---~~~~l~aik~l~~~~~---~~~aTa---~Qa-~LA~~agA~YISPFVGRI 109 (199)
...+|+-=.++.++.| ++.||- .....++|+.+.+.+. .+++.. .++ =.|+.+|++.|.-|+.=
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~~d~~~v~~~~~~~~~~~~v~~~~r~~~~die~A~~~g~~~v~i~~s~- 97 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTEKDREAVEACLDRGYKFPEVTGWIRANKEDLKLVKEMGLKETGILMSV- 97 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEecCcChHHHHHHHHHHHcCCCCCEEEEEecCCHHHHHHHHHcCcCEEEEEEcC-
Confidence 7788988889999999 887753 2344455665555443 244323 222 24667899998887532
Q ss_pred hhhc-ccccCCCCCCCCCCChHHHHHHHHHHHHhcCCceEEEEc-ccCC---------HhhHHHH---hCCC-EEeeC
Q psy10967 110 LVRY-VANTGTKTYAPTEDPGVVSVTKIYNYYKKFGYKTVVMGA-SFRN---------TGEILAL---AGCD-LMTIG 172 (199)
Q Consensus 110 dDwy-kk~~G~~~~~~~~ddGV~vVk~I~~~yk~~gykTkILAA-SFRN---------v~QV~aL---AGaD-aVTIp 172 (199)
.|.+ +++-+ .....-++.++++.++.+.+|....+-.- ..|. +.++.+. +|+| .+.++
T Consensus 98 S~~~~~~~~~-----~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~ 170 (279)
T cd07947 98 SDYHIFKKLK-----MTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLC 170 (279)
T ss_pred CHHHHHHHhC-----cCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEec
Confidence 2322 11212 11234677788899999999987665542 4554 2333332 8999 56443
No 341
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=20.10 E-value=1.7e+02 Score=26.27 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=42.3
Q ss_pred HHHHHhhhhc---Ccccccch-----hhhHHHHHcCCcccccchhhhhh-hcccccCCCCCCCCCCChHHHHHHHHHHHH
Q psy10967 71 INAIKQNRHV---SYATKATQ-----TEDYLDVYNNNADGQDENAKHLV-RYVANTGTKTYAPTEDPGVVSVTKIYNYYK 141 (199)
Q Consensus 71 l~aik~l~~~---~~~~~aTa-----~Qa~LA~~agA~YISPFVGRIdD-wykk~~G~~~~~~~~ddGV~vVk~I~~~yk 141 (199)
++.++++++. .+.+-+.- .+++--+.|||+.|+-+-+=+.. + .---++.+++.++++
T Consensus 228 l~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp--------------~~~~~i~~~L~~~l~ 293 (310)
T PRK02506 228 LANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGP--------------AVFERLTKELKAIMA 293 (310)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhCh--------------HHHHHHHHHHHHHHH
Confidence 4455555443 35555544 77777789999999987776652 2 123567788888899
Q ss_pred hcCCce
Q psy10967 142 KFGYKT 147 (199)
Q Consensus 142 ~~gykT 147 (199)
++||++
T Consensus 294 ~~g~~s 299 (310)
T PRK02506 294 EKGYQS 299 (310)
T ss_pred HhCCCC
Confidence 998654
No 342
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=20.02 E-value=2.1e+02 Score=25.15 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=38.1
Q ss_pred HHHHHhhhhc-Ccccccch-----hhhHHHHHcCCcccccchhhhhhhcccccCCCCCCCCCCChHHHHHHHHHHHHhcC
Q psy10967 71 INAIKQNRHV-SYATKATQ-----TEDYLDVYNNNADGQDENAKHLVRYVANTGTKTYAPTEDPGVVSVTKIYNYYKKFG 144 (199)
Q Consensus 71 l~aik~l~~~-~~~~~aTa-----~Qa~LA~~agA~YISPFVGRIdDwykk~~G~~~~~~~~ddGV~vVk~I~~~yk~~g 144 (199)
++.++++++. ++.+-+.- .++.-.+.+||+.|+-.=+=+.|. +=--++.+.+.++++++|
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P--------------~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDP--------------YAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCc--------------HHHHHHHHHHHHHHHHcC
Confidence 4566666664 56666544 566666689999887532222221 112456677777888888
Q ss_pred Cce
Q psy10967 145 YKT 147 (199)
Q Consensus 145 ykT 147 (199)
+++
T Consensus 289 ~~~ 291 (301)
T PRK07259 289 IKS 291 (301)
T ss_pred CCC
Confidence 654
Done!